Citrus Sinensis ID: 009090
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | 2.2.26 [Sep-21-2011] | |||||||
| O22898 | 660 | Long chain acyl-CoA synth | yes | no | 1.0 | 0.824 | 0.707 | 0.0 | |
| Q9T0A0 | 666 | Long chain acyl-CoA synth | no | no | 0.983 | 0.803 | 0.525 | 1e-169 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.998 | 0.815 | 0.506 | 1e-165 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.992 | 0.812 | 0.510 | 1e-163 | |
| Q9XIA9 | 665 | Long chain acyl-CoA synth | no | no | 0.983 | 0.804 | 0.475 | 1e-147 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.893 | 0.693 | 0.420 | 4e-97 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.895 | 0.695 | 0.402 | 1e-95 | |
| Q1ZXQ4 | 673 | Fatty acyl-CoA synthetase | yes | no | 0.972 | 0.786 | 0.357 | 2e-94 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | no | no | 0.904 | 0.737 | 0.372 | 1e-91 | |
| Q9ULC5 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.889 | 0.708 | 0.352 | 3e-83 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/544 (70%), Positives = 463/544 (85%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ + PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 281/535 (52%), Positives = 382/535 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K + QVEEGKEG DG+PSVGPVYR++ A +GFP +++ WD+F MSV+KYP N ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG AV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ IFD+ + YK +M G
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DLT+E +IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIY 539
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/543 (50%), Positives = 370/543 (68%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F +VE KE DG PSVGPVYR+ A NGFP+ + + WDIF +V+KYP NRML
Sbjct: 5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ HAE+ FV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+ EQKE A + G+ +SWDEFL LG+ + E+ +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T +GV FL ++ DVY+S+LPLAH+ DR IEE + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKP++ VPRV ++++ G+++ L ++++FD + YK M G
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
ASP D L F KVK LGG +R+++SG APL++ +E FLRV C ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T FPDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E IDGW HTGD+G+ PNG +KIIDRKKN+ K++QGEYVA+E LENVY +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544
Query: 542 IED 544
IE
Sbjct: 545 IES 547
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1486), Expect = e-163, Method: Compositional matrix adjust.
Identities = 276/541 (51%), Positives = 376/541 (69%), Gaps = 1/541 (0%)
Query: 4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
+ +VE+GK+G DG PSVGPVYR++ A +GFP DL +AWDIF +SV+K P N MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
R VDGK G YVW+TYKEV+ V+++ +++R G G + GIYGAN P+W+ +MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
A L CVPLYDTLG GA+ FI+ HAE+ F ++ K+ ELL +S + L+ +V F +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
T Q+ A + + YSWD+FL LG+ E+ + ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
E+I + GV L ++++T DVYLS+LPLAHI DRVIEE AS+G++ GD+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
L +D+ LKPT+ VPRV E+I+ G+++ L + +++++F+ +KYK M G
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
+ASP+AD + F+KVK LGG +RL++SG APL+ +E FLRV CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425
Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
T V P+E+ M+GT GP ++RLE VPEMGY L P GE+C+RGKTLFSGYYK
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
DLT+E IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545
Query: 543 E 543
E
Sbjct: 546 E 546
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1340), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/536 (47%), Positives = 347/536 (64%), Gaps = 1/536 (0%)
Query: 8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
VEEG+ PS GPVYR A +G + +D+++ W FS +V+KYP +MLG R
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
D K GPY W TYKE ++ ++I SA+R+ G +PG GIYGANCP+W+ AMEAC + +
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
VPLYD+LG AV FI++HAE+ VFVQ+K V +LS + L+ +V F +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
E A + +SW+EF +G ++E + + +ICTIMYTSGT+G+PKGV+L + I+
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
V +D L+ + DV+ S+LPLAH D+V+E YF RG+SVGY+ GD+ L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
+ LKPT+ GVPRV++K++ GI + + +R+++FD Y YKL M G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
D L F K+K LGGR +++SG APL VEEFLR+ + L QGYGLTE+CG +
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
MVGT G E RL VPEMGY D P GE+C+RG ++FSGY+K DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ +IDGWFHTGDIG+ +G +KIIDRKKN+ K+SQGEYVA+E LEN Y P+I
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI 546
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (912), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 211/502 (42%), Positives = 287/502 (57%), Gaps = 16/502 (3%)
Query: 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
D+ T D F +V + + LG R VDG G Y W TY E + S L G
Sbjct: 82 DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141
Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
G VGIY N P+W+ AC++ S + VPLYDTLGP AV FI++HA + +F + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201
Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAE-QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
LLS C S +V E + +G+K S+ L+ G+ N PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
P ++ TI YTSGT+G PKGVVLTH + V+G F K DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314
Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
+R + G +VG+Y GD L DDL L+PT+ + VPR++ +I+ GI A++
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
L+ R+F+A Y K + G + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
V EFL+V + +GYG+TET + DE + G G + E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489
Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
+ D P P GE+CVRG +F+GYYK+ T+E I DGW HTGDIG LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549
Query: 516 KNLIKISQGEYVALEYLENVYC 537
KN+ K++QGEY+A E +ENVY
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYA 571
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 201/499 (40%), Positives = 284/499 (56%), Gaps = 12/499 (2%)
Query: 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
++ T D F +V+ Y N+ LG R DG G Y W TY E E I S L G
Sbjct: 82 EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141
Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
G VG+Y N P+W+ AC A S + VPLYDTLGP AV F+++HA + +F + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201
Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
LLS +R++V + TG+ S+ + L G+ + PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260
Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
+I TI YTSGT+G PKGVVLTH + V+G + E + DVY+S+LPLAHI
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315
Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
+R + G +VG+Y GD+ L DD L+PT+ VPR++ +I++GI A++
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
+++R+F+ Y K + G R S D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
+FLR+ + +GYG+TET + D + G G + E++L +VPEM Y+
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491
Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
D P P GE+CVRG +F GYYK+ + TRE + DGW HTGDIG LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551
Query: 518 LIKISQGEYVALEYLENVY 536
+ K++QGEY+A E +ENVY
Sbjct: 552 IFKLAQGEYIAPEKIENVY 570
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/545 (35%), Positives = 307/545 (56%), Gaps = 16/545 (2%)
Query: 4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
+ VE G++ ++G G + RN ++ S D ++ T +D S +KY +
Sbjct: 27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82
Query: 62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
G R +G G + W +Y E I L G +P +VGI+ N +W+ A
Sbjct: 83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
S V Y+TLG +++++ +HAEI F + +++ L + + L+ ++CF
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
S+ E +A + G+ Y++DE + GK + + PP P + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
++TH+ + + V V F+ ++ DV+ S+LP AH+L+RV+ F GA++G +
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD++ + ++ L PTL GVPRVFE+I + K + + L R +F+ Y K +
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G+K + DL+ F K+K LGG++R+++SG APLS + E FLRV C ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
E CG D+ VGT GP +E++L +VPE+GY + GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495
Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
YYK+ + TRE DGWFHTGDIG+ +G + I+DRKKN+ K+SQGEYVA+E +E +
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555
Query: 539 APIIE 543
+ +E
Sbjct: 556 SEYVE 560
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 294/510 (57%), Gaps = 18/510 (3%)
Query: 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
S D T +D++ + K + LG R + DGK G Y W +YK+ I SAL
Sbjct: 48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105
Query: 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
G G R+GI+ N P+WV + A SL+ V LY TLG A+ ++++H+EI +
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165
Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
+ K V+++LS ++ +V + L A + +K Y +F LG+ N +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
P P ++CT++YTSG++G+PKGV+LTH + + V+G + + +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PLAH +R + G +G++ G + L +D+ L+PT L G PRV++++H+ +
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
+ L++ +F+ K + + +G +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
PL ++ EFLR C +V GYGL+E G +V +P++ VG GP E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453
Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
EM Y D P P GEVC+RG +F GY+K+P+ T+E + DGWFHTGDIG+ NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513
Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPI 541
IDRKKN+ K+SQGEYVA EYLE+V+ +P
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPF 543
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 283/505 (56%), Gaps = 21/505 (4%)
Query: 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
SD T +++F + LG+R PY W +YK+V + + S L G
Sbjct: 72 SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127
Query: 98 -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
+ P VGI+ N P+W+ + AC S++ VPLYDTLGP A+ I++ A+I V
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187
Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
+ +L + L+V++ + K+ ++GI+ S + +LGK + +
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247
Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
+PP P ++ I +TSGT+GDPKG ++TH+ I VS FL E T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304
Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
LPLAH+ +R+++ + GA VG++ GD+ L DD+ LKPTL VPR+ +I++ ++
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364
Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
E PL++ + K + G + ++ D L F K++ LGGR+R++++G
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420
Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
AP+ST V F R + + YG TE G T P + P++ + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
+M Y +++ GEVC++G +F GY K+P+ T+E++ DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537
Query: 512 IDRKKNLIKISQGEYVALEYLENVY 536
IDRKKN+ K++QGEY+A E +EN+Y
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIY 562
|
Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | ||||||
| 255548375 | 660 | long-chain-fatty-acid CoA ligase, putati | 1.0 | 0.824 | 0.805 | 0.0 | |
| 225437622 | 662 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.821 | 0.788 | 0.0 | |
| 224068616 | 665 | predicted protein [Populus trichocarpa] | 1.0 | 0.818 | 0.786 | 0.0 | |
| 356505647 | 662 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.821 | 0.781 | 0.0 | |
| 356572815 | 662 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.821 | 0.773 | 0.0 | |
| 356534712 | 660 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.824 | 0.75 | 0.0 | |
| 356499773 | 660 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.824 | 0.751 | 0.0 | |
| 357511417 | 668 | Annotation was added to scaffolds in Nov | 1.0 | 0.814 | 0.741 | 0.0 | |
| 449518374 | 660 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.824 | 0.755 | 0.0 | |
| 297824813 | 660 | long-chain-fatty-acid--CoA ligase family | 1.0 | 0.824 | 0.713 | 0.0 |
| >gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/544 (80%), Positives = 492/544 (90%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1 MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A Q IKPYSW+EFL LGK N E PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE + +F+ VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGP T+ FPDEMCM+G G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/544 (78%), Positives = 486/544 (89%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD +S +KYPGNRM
Sbjct: 1 MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
S T EQK+ A GIKPYSWDEFLH+GK N E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
+NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY A
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/547 (78%), Positives = 487/547 (89%), Gaps = 3/547 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
+K FAAQVEEG+EGKDGKPSVGPVYRNLL+ +P +D D+ T+WDIFS S +KYP +M
Sbjct: 3 LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63 LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A Q GIK YSW+E+L +GK N EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
LNALRDDLMELKPT LAGVPRVFEKI EG++ KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482
Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542
Query: 538 VAPIIED 544
PI+ED
Sbjct: 543 NTPIVED 549
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/544 (78%), Positives = 483/544 (88%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1 MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61 LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A+ GIKPYSW EFLH+GK N I PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/544 (77%), Positives = 481/544 (88%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY NRM
Sbjct: 1 MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61 LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K+ A+ GIKPYSW+EFLH+GK N I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE I FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LTRE+I DGWFHTGDI ++ NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/544 (75%), Positives = 475/544 (87%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGK+G SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1 MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME
Sbjct: 61 LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+LT E+K A GIKPYSW EFLHLGK N PPQ +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
T+E + V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LY YKL WM GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/544 (75%), Positives = 475/544 (87%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGK+G SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1 MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61 LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
SLT E+K A GIKPYSW +FLHLGK N PPQ +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
T+E + V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LY YKL WM GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/550 (74%), Positives = 476/550 (86%), Gaps = 6/550 (1%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP D DL TAWDIFS++ +KYP NRM
Sbjct: 1 MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61 LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
LT E+K+ A G+KPYSW+EFL +GK I PPQ +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
THE I FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300
Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F LYK KL
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360
Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
WM GYK ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420
Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480
Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540
Query: 535 VYCVAPIIED 544
VY + PI+ED
Sbjct: 541 VYGITPIVED 550
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/545 (75%), Positives = 472/545 (86%), Gaps = 1/545 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK F+ +VEEG+EGKDGKPSVGPVYRN+LA FPS DL+T+WD+FS+S KY RM
Sbjct: 1 MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61 LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+ C +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
SL E+K A G+KPYSWDEFL L K N EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240
Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300
Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360
Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420
Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
TCGPTT+ FPDEMCM+G G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480
Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY +
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540
Query: 540 PIIED 544
PI+ED
Sbjct: 541 PIVED 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824813|ref|XP_002880289.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326128|gb|EFH56548.1| long-chain-fatty-acid--CoA ligase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/544 (71%), Positives = 461/544 (84%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+ EEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKAEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA GAEPGCRVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAVGAEPGCRVGIYGINCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ E PP+ NICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEETNPPKALNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+D+F+DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHGD
Sbjct: 241 THQAVATFVVGMDIFMDQFEDKMTHDDVYLSFLPLAHILDRLNEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAWMN GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKHKLAWMNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVAEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E I DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVIKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 544 | ||||||
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 1.0 | 0.824 | 0.707 | 3e-220 | |
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.983 | 0.803 | 0.525 | 1.4e-156 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.996 | 0.813 | 0.507 | 5.2e-152 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.992 | 0.812 | 0.510 | 3.7e-151 | |
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.983 | 0.804 | 0.475 | 2.9e-135 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.895 | 0.694 | 0.423 | 9.7e-96 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.902 | 0.701 | 0.403 | 5.7e-91 | |
| DICTYBASE|DDB_G0269474 | 673 | fcsB "fatty acyl-CoA synthetas | 0.968 | 0.783 | 0.361 | 3.1e-90 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.898 | 0.733 | 0.377 | 2.3e-87 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.909 | 0.724 | 0.352 | 1.4e-85 |
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
Identities = 385/544 (70%), Positives = 463/544 (85%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAA+VEEG +G DGKPSVGPVYRNLL+ GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
+++ E A + G+K YSW +FLH+G+ + PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
+ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
G T + FPDEMCM+GT G +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540
Query: 541 IIED 544
+++D
Sbjct: 541 VVQD 544
|
|
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
Identities = 281/535 (52%), Positives = 382/535 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K + QVEEGKEG DG+PSVGPVYR++ A +GFP +++ WD+F MSV+KYP N ML
Sbjct: 5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG AV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ IFD+ + YK +M G
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DLT+E +IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIY 539
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 275/542 (50%), Positives = 370/542 (68%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F +VE KE DG PSVGPVYR+ A NGFP+ + + WDIF +V+KYP NRML
Sbjct: 5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ HAE+ FV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+ EQKE A + G+ +SWDEFL LG+ + E+ +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T +GV FL ++ DVY+S+LPLAH+ DR IEE + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKP++ VPRV ++++ G+++ L ++++FD + YK M G
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
ASP D L F KVK LGG +R+++SG APL++ +E FLRV C ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T FPDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E IDGW HTGD+G+ PNG +KIIDRKKN+ K++QGEYVA+E LENVY +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544
Query: 542 IE 543
IE
Sbjct: 545 IE 546
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
Identities = 276/541 (51%), Positives = 376/541 (69%)
Query: 4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
+ +VE+GK+G DG PSVGPVYR++ A +GFP DL +AWDIF +SV+K P N MLG
Sbjct: 6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65
Query: 63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
R VDGK G YVW+TYKEV+ V+++ +++R G G + GIYGAN P+W+ +MEACN
Sbjct: 66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125
Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
A L CVPLYDTLG GA+ FI+ HAE+ F ++ K+ ELL +S + L+ +V F +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
T Q+ A + + YSWD+FL LG+ E+ + ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245
Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
E+I + GV L ++++T DVYLS+LPLAHI DRVIEE AS+G++ GD+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
L +D+ LKPT+ VPRV E+I+ G+++ L + +++++F+ +KYK M G
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
+ASP+AD + F+KVK LGG +RL++SG APL+ +E FLRV CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425
Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
T V P+E+ M+GT GP ++RLE VPEMGY L P GE+C+RGKTLFSGYYK
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
DLT+E IDGW HTGD+G+ P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545
Query: 543 E 543
E
Sbjct: 546 E 546
|
|
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 255/536 (47%), Positives = 347/536 (64%)
Query: 8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
VEEG+ PS GPVYR A +G + +D+++ W FS +V+KYP +MLG R
Sbjct: 11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
D K GPY W TYKE ++ ++I SA+R+ G +PG GIYGANCP+W+ AMEAC + +
Sbjct: 71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
VPLYD+LG AV FI++HAE+ VFVQ+K V +LS + L+ +V F +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
E A + +SW+EF +G ++E + + +ICTIMYTSGT+G+PKGV+L + I+
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
V +D L+ + DV+ S+LPLAH D+V+E YF RG+SVGY+ GD+ L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
+ LKPT+ GVPRV++K++ GI + + +R+++FD Y YKL M G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
D L F K+K LGGR +++SG APL VEEFLR+ + L QGYGLTE+CG +
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
MVGT G E RL VPEMGY D P GE+C+RG ++FSGY+K DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ +IDGWFHTGDIG+ +G +KIIDRKKN+ K+SQGEYVA+E LEN Y P+I
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI 546
|
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| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 216/510 (42%), Positives = 296/510 (58%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
FP D+ T D F +V + + LG R VDG G Y W TY E + S L
Sbjct: 77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G VGIY N P+W+ AC++ S + VPLYDTLGP AV FI++HA + +F
Sbjct: 136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195
Query: 154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
+ + LLS C S +R++V L + +G+K S+ L+ G+ N
Sbjct: 196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253
Query: 213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
PP+P ++ TI YTSGT+G PKGVVLTH + V+G F K DVY+S+
Sbjct: 254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308
Query: 273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
LPLAHI +R ++ YF G +VG+Y GD L DDL L+PT+ + VPR++ +I+ G
Sbjct: 309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
I A++ L+ R+F+A Y K + G + ASP+ D L F K+K RLGGR+R +
Sbjct: 366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
SG +PLS EV EFL+V + +GYG+TET C + + D + G G + E++
Sbjct: 423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480
Query: 449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
L +VPEM Y+ D P P GE+CVRG +F+GYYK+ T+E I DGW HTGDIG LP
Sbjct: 481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540
Query: 507 GVVKIIDRKKNLIKISQGEYVALEYLENVY 536
G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVY 570
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| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 204/506 (40%), Positives = 288/506 (56%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
FP ++ T D F +V+ Y N+ LG R DG G Y W TY E E I S L
Sbjct: 77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G VG+Y N P+W+ AC A S + VPLYDTLGP AV F+++HA + +F
Sbjct: 136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195
Query: 154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
+ + LLS +R++V + TG+ S+ + L G+ +
Sbjct: 196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
PP+P +I TI YTSGT+G PKGVVLTH + V+G + + F DVY+S+L
Sbjct: 255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PLAHI +R + G +VG+Y GD+ L DD L+PT+ VPR++ +I++GI A
Sbjct: 310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
++ +++R+F+ Y K + G R S D L F K+K +LGGR+R + SG +
Sbjct: 370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
PLS +V +FLR+ + +GYG+TET C + + D + G G + E++L +V
Sbjct: 427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484
Query: 453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
PEM Y+ D P P GE+CVRG +F GYYK+ + TRE + DGW HTGDIG LP G +K
Sbjct: 485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544
Query: 511 IIDRKKNLIKISQGEYVALEYLENVY 536
IIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 545 IIDRKKNIFKLAQGEYIAPEKIENVY 570
|
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| DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 198/547 (36%), Positives = 309/547 (56%)
Query: 4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
+ VE G++ ++G G + RN ++ S D ++ T +D S +KY +
Sbjct: 27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82
Query: 62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
G R +G G + W +Y E I L G +P +VGI+ N +W+ A
Sbjct: 83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
S V Y+TLG +++++ +HAEI F + +++ L + + L+ ++CF
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
S+ E +A + G+ Y++DE + GK N + + PP P + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
++TH+ + + V V F+ ++ DV+ S+LP AH+L+RV+ F GA++G +
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD++ + ++ L PTL GVPRVFE+I + K + + L R +F+ Y K +
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G+K + DL+ F K+K LGG++R+++SG APLS + E FLRV C ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436
Query: 419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
E CG C DE VGT GP +E++L +VPE+GY + GEVC+RG ++
Sbjct: 437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493
Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
SGYYK+ + TRE DGWFHTGDIG+ +G + I+DRKKN+ K+SQGEYVA+E +E +
Sbjct: 494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553
Query: 537 CVAPIIE 543
+ +E
Sbjct: 554 VKSEYVE 560
|
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| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 193/511 (37%), Positives = 297/511 (58%)
Query: 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
S D T +D++ + K + LG R + DGK G Y W +YK+ I SAL
Sbjct: 48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105
Query: 95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
G G R+GI+ N P+WV + M A N SL+ V LY TLG A+ ++++H+EI +
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164
Query: 154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
+ K V+++LS ++ +V + L A + +K Y +F LG+ N
Sbjct: 165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221
Query: 213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
+ P P ++CT++YTSG++G+PKGV+LTH + + V+G + F + +DV++S
Sbjct: 222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276
Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
+LPLAH +R + G +G++ G + L +D+ L+PT L G PRV++++H+ +
Sbjct: 277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
+ L++ +F+ K + + +G +P+ D L F K K RLGGR++ ++SG
Sbjct: 337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392
Query: 392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
APL ++ EFLR C +V GYGL+E G +V +P++ VG GP E++L +
Sbjct: 393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451
Query: 452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
VPEM Y D P P GEVC+RG +F GY+K+P+ T+E + DGWFHTGDIG+ NG +
Sbjct: 452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511
Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
IIDRKKN+ K+SQGEYVA EYLE+V+ +P
Sbjct: 512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSP 542
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| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 182/517 (35%), Positives = 290/517 (56%)
Query: 28 LLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86
LL N S D T ++ F + LG+R PY W TYK+V +
Sbjct: 60 LLTDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRK----PNQPYQWLTYKQVLDRA 115
Query: 87 LQIVSALRASGAEPGCR--VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFIL 144
+ S L G +P +GI+ N P+W+ + AC S++ VPLYDTLGP A+ +I+
Sbjct: 116 QHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIV 175
Query: 145 DHAEIDFVFVQDKKVKELLSPDCRSAQR--LRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
+ A+I V + ++L +C + L+ ++ E K+ + G++ + E
Sbjct: 176 NKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQE 235
Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
LG+ N + +PP P ++C + +TSGT+G+PKG +LTHE + V+ FL ED
Sbjct: 236 AEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENV---VANAAAFLRTIEDT 292
Query: 263 M--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
+ T DV +S+LPLAH+ +RV++ + GA VG++ GD+ L DD+ LKPT+ VP
Sbjct: 293 VECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVP 352
Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
R+ +I++ I+ P+++ + + K+ + G + ++ L D L F+KV+
Sbjct: 353 RLLNRIYDKIQSGANT--PMKKFLLNFAATMKMIEVKQGIIRNDS--LLDKLVFKKVQET 408
Query: 381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440
+GGR+R++++G AP+S V +FLR + + YG TE T P + G GP
Sbjct: 409 MGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSMPGDWT-TGHVGP 467
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
V + ++L++V EM Y ++ GEVC++G +F GY K+P+ T E+I DGW HTGD
Sbjct: 468 PLVCNIIKLDDVEEMNYFSSNNE--GEVCIKGPNVFKGYLKDPEKTAEAIDKDGWLHTGD 525
Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
+G+ +PNG +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 526 VGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVY 562
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22898 | LACS1_ARATH | 6, ., 2, ., 1, ., 3 | 0.7077 | 1.0 | 0.8242 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.963 |
| 3rd Layer | 6.2.1.3 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028146001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | 0.900 | |||||||
 | GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | 0.899 | |||||||
 | GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | |||||||
 | GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | |||||||
 | GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | |||||||
 | GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | |||||||
 | GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | |||||||
 | GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 544 | |||
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-153 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-128 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-101 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-98 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-93 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-87 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-79 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-75 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-68 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 5e-56 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-55 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 5e-52 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-47 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-44 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-43 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-42 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-41 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 6e-39 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-38 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-37 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-36 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 3e-35 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-32 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-31 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-31 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-31 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 7e-30 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-29 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-26 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 7e-26 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-25 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-24 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-24 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-23 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-21 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-21 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-21 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-21 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 8e-21 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-20 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 5e-20 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-19 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-19 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-19 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 5e-19 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 7e-19 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 7e-19 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-18 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-18 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-18 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-18 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-17 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-17 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-17 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-17 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-17 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 5e-17 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 6e-17 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 6e-17 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 9e-17 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-16 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-16 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 3e-16 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-16 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 5e-16 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 8e-16 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-15 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 5e-15 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-15 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 7e-15 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-14 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-14 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-14 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-14 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-13 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-13 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-13 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-13 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-13 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-12 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-12 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 9e-12 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-11 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 2e-11 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-11 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 1e-10 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-10 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-10 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-10 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 3e-10 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-10 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-10 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 7e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-09 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-09 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-09 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 5e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 8e-09 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 9e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 9e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-08 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-08 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 2e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-08 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 6e-08 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 8e-08 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 9e-08 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-07 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-07 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 2e-07 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 2e-07 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-07 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-07 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 3e-07 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-07 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 7e-07 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 8e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 9e-07 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 9e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-06 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-06 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 4e-06 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-06 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 6e-06 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 6e-06 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-06 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 6e-06 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-06 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 6e-06 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-06 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 8e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-05 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-05 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-04 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-04 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-04 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 3e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 3e-04 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 4e-04 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 5e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-04 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 5e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-04 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 6e-04 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 6e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 6e-04 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 8e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 0.001 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 0.002 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.002 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.002 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 0.002 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 0.003 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.003 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.003 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.003 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 0.003 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 0.004 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 0.004 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.004 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.004 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 1103 bits (2855), Expect = 0.0
Identities = 433/544 (79%), Positives = 486/544 (89%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
MK FAAQVEEG +GKDGKPSVGPVYRNLL+ GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LGWR VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61 LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180
Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
S+T E+ + A Q G+K YSW +FLH+GK N E PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240
Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300
Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360
Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420
Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
GPTT+ FPDEMCM+GT G +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480
Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540
Query: 541 IIED 544
I+ED
Sbjct: 541 IVED 544
|
Length = 660 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 649 bits (1677), Expect = 0.0
Identities = 279/544 (51%), Positives = 368/544 (67%), Gaps = 5/544 (0%)
Query: 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
+ + +VEE + GKPS GPVYR++ A +G + +D+++ W FS +V+KYP N+M
Sbjct: 2 AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61
Query: 61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
LG R D K GPYVW TYKEVY+ ++I SA+R+ G PG R GIYG+NCP+W+ AMEA
Sbjct: 62 LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
CN+ + VPLYDTLG AV FI++HAE+ FVQ+ K+ +LS P C S L+ +V
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179
Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
F +++EQKE A + G+ +SW+EF +G ++ E+ P Q +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238
Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
+LT+ I V D L + T +D Y S+LPLAH+ D+VIE Y +GAS+G++
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
GD+ L +D+ LKPT+ GVPRV+++I+ GI + + LR+++FD Y YKL +
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G KQ EASP D L F K+K LGGR+RL++SG APL VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
E+CG + MVGT G E RLE VPEMGY L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478
Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
Y+K DLT E +IDGWFHTGDIG+ PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538
Query: 539 APII 542
P+I
Sbjct: 539 CPLI 542
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 632 bits (1632), Expect = 0.0
Identities = 284/542 (52%), Positives = 385/542 (71%)
Query: 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
K F QVEEGKEG DG+PSVGPVYR++ A +GFP+ +++ WD+F MSV+KYP N ML
Sbjct: 5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64
Query: 62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
G R VDGK G YVW+TY+EVY+ V+++ ++LR+ G + + GIYGAN P+W+ +MEAC
Sbjct: 65 GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
NA L CVPLYDTLG GAV FI+ H+E+ VFV++KK+ EL S + ++ +V F
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
++ EQKE A G+ Y+WDEFL LG+ + ++ + +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244
Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
+E+I T ++GV L +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L +DL ELKPT+ VPRV ++++ G++K L + L++ +FD+ + YK M G
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
EASPL D L F KVK LGG +R+++SG APL++ VE FLRV C ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
T V PDE+ M+GT GP ++RLE VPEM Y L P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484
Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
DLT+E +IDGW HTGD+G+ PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544
Query: 542 IE 543
++
Sbjct: 545 VD 546
|
Length = 666 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 602 bits (1555), Expect = 0.0
Identities = 222/473 (46%), Positives = 296/473 (62%), Gaps = 45/473 (9%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
GPY W +YKEV E L I S LRA G +PG ++GI+ N P+W+ +AC + SL+ VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
YDTLG A+ +IL+ EI VF KV
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
YS++E LGK N++ PP+P ++ TIMYTSGT+G+PKGV+LTH I V+G
Sbjct: 89 ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
++ + +F + DVY+S+LPLAHI +RV+E G +GYY GD L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
KPT+ GVPRV ++I++GI + L+R +F+ Y YKLA + G ASPL D
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
L F+K+KA LGGR+RL++SGGAPLS + +EFLRV ++QGYGLTETC T+ P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
G GP E++L +VPEMGY DDPP GE+C+RG +F GYYKNP+ T E+
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y +P+++
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVD 429
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-153
Identities = 213/522 (40%), Positives = 302/522 (57%), Gaps = 23/522 (4%)
Query: 24 VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
VYR+ + + FP ++ T D F +V+ + + LG R VDG G Y W TY
Sbjct: 23 VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81
Query: 80 KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
E I S L G G VG+Y N P+W+ AC+A S + VPLYDTLGP A
Sbjct: 82 GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141
Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V FI++HAE+ +F + + LLS + S +R++V + TG++
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ + L G+ + PP+P ++ TI YTSGT+G PKGVVLTH + V+G L
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
+ DV++S+LPLAHI +RV + G +VG+Y GD L DDL L+PT+
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
VPR++ +I++GI A++E L+ R+F+A Y K + G + SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370
Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
KA+LGGR+R + SG +PLS +V EFLR+ +++GYG+TET C + + D + G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
G + E++L +VPEM Y+ D P P GE+CVRG +F GYYK+ TRE I DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
HTGDIG LP G +KIIDRKKN+ K++QGEY+A E +ENVY
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVY 530
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 387 bits (997), Expect = e-128
Identities = 173/487 (35%), Positives = 259/487 (53%), Gaps = 41/487 (8%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G + TY+E+YE V + S L + G G RV I+ AN P+W A A AL + VP+
Sbjct: 41 GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
Y T P + +IL+ +E +FV++ V +L DC L V++ E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
+ + DE + L ++ I PP+P ++ TI+YTSGT+G PKGV+LTH
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
+ V+G+D L D LSFLPLAHI +R E G +V + D
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
L +DL E++PT++ GVPRV+EK+++GI + + + +RR++F K ++ G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329
Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
+AD L FRK++ LGGR+R +SGGAPLS E+ F R + +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
ET +V PD ++GT G E+++ + GE+ VRG + G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433
Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
YYKNP+ T E+ DGWF TGD+G++ +G + I RKK LIK+S G+ +A E +E+
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493
Query: 538 VAPIIED 544
+P+IE
Sbjct: 494 KSPLIEQ 500
|
Length = 613 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-101
Identities = 151/478 (31%), Positives = 218/478 (45%), Gaps = 121/478 (25%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G + T+ E+ E V ++ + L A G +PG RV I N P+WV A A A + VP+
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
Y T P V +IL+ + VFV+DK PD L ++ +TS T
Sbjct: 61 YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
TG +PKGV+LTH + +
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
+ + ++ D LSFLPLAH+ ++ + EY GA V + L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
++PT+ VPRV+EKI+ GI+ + PL+R++F
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210
Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
A GGRLR +SGGAPL EV EF R + +++GYGLTET G TV
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
P ++ + GT G E+R+ E GE+ VRG + GYYKNP+ T
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304
Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
E++ DGW HTGDIG++ +G + I DRKK+LI + G+ +A + +EN +P I
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQ 362
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 311 bits (800), Expect = 5e-98
Identities = 160/483 (33%), Positives = 234/483 (48%), Gaps = 48/483 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E++E ++ L G G V IY +W+ ++ + S++ +Y LG
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
A+ + L E + K V LL P+ ++ SL A
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
+ +W + + G P N + IMYTSGT+GDPKGV+ TH ++
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
+ ++ L+ D+ Y S+LPLAHI++ + F RGA +G+ G L D
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349
Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
DL E +P L GVPR+F+ IKKA+E P L+RR+FD Y+ +L +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405
Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
G +P + F +A LGGR+R ++SGG PLS +EF+ V ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460
Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
LTET + ++ G + E++L + E Y D P P GE+ +RG L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517
Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
F GYYK +LTRE + DGWFHTGD+G I NG ++II R K L K GEY+ALE LE
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577
Query: 535 VYC 537
+Y
Sbjct: 578 LYG 580
|
Length = 700 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 300 bits (769), Expect = 1e-93
Identities = 190/569 (33%), Positives = 284/569 (49%), Gaps = 82/569 (14%)
Query: 41 LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
+ T W+ +F S +KY R+LG R + DG+ G Y W TY
Sbjct: 50 VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109
Query: 80 KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
+V+E V S L A G RV I+ +W+ A++ C ++ V +Y +LG A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169
Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
+ L+ E+ V K++K+L+ + RV + + +
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228
Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
S+ E LGK N ++ P P +I IMYTSG++G PKGV++TH I V+GV
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282
Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
MTV +DVYL++LPLAHIL+ E GA++GY G L D
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336
Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
D LKPTL+ VP + +++ +G++K ++ L +++FD YK +LA +
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
G E L D L F+K++A LGGR+R ++SGGAPLS + + F+ + A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455
Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
ETC T D+ VG GP ++L E GY D P P GE+ + G ++
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514
Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL--- 529
GY+KN + T E +D WF+TGDIGQ P+G ++IIDRKK+++K+ GEYV+L
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574
Query: 530 -------EYLENV---------YCVAPII 542
Y++N+ YCVA ++
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVV 603
|
Length = 696 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 2e-87
Identities = 123/467 (26%), Positives = 190/467 (40%), Gaps = 74/467 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ E ++ +ALRA G PG RV I N P+WV A+ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ +IL+ +E + D+ + +LL + L +++ G
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
D+ L G E P P ++ I+YTSGT+G PKGV+LTH + +G+
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
+T D L LPL G ++ D L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
+L GVP + + + ++ +L
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247
Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
LRLV+SGG PL E+ LV GYG TET T P +
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298
Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
+ G+ G + ++ + E G P+ GE+C+RG + GY +P+LT E +
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355
Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DGW TGD+G+ +G ++I+ RK + +KI GE + +E V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVL 401
|
Length = 412 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 257 bits (660), Expect = 2e-79
Identities = 145/495 (29%), Positives = 222/495 (44%), Gaps = 93/495 (18%)
Query: 68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
G++ Y T+ +V ++ +I +AL++ G EPG R+ I NC +W+ A A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
VPLY TL + ++L+H++ +FV +K + +
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115
Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
Y WD+ L E P P ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156
Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
L+ A G + +T +D LS+LPLAHI +RVI E GA V ++
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210
Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
L+ DL +PT+ VPR++ K +GI + L L L+ I +L K
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265
Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
+K+ LG + RL SG AP+ + + R +
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301
Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
+ +GYG+TE +T+ +P + +GT G EL++ E GE+
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346
Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+R L SGYYK+P+ T E+ DGW HTGD G+I +G +KI R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406
Query: 529 LEYLENVYCVAPIIE 543
+EN+ P +E
Sbjct: 407 PAPIENLLSANPHVE 421
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 3e-75
Identities = 128/467 (27%), Positives = 192/467 (41%), Gaps = 73/467 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ ++ +AL+A G +PG RV I N P+++ A A + VPL L P
Sbjct: 40 TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99
Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
+ +IL+ A + + E ++ + ++
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
P + + G + + P P ++ ++YTSGT+G PKGVVLTH + ++
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
+T DDV LS+LPL HI G VG L A L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
L G V L + + KYK+ + + L D
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
L LRLV+SGGAPL E+ E F +++GYGLTET T+ PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339
Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
++ G+ G E+R+ V G L GE+ VRG + GY+ P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396
Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DGW TGD+G + +G + I+ R K+LI GE + E +E V
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAV 442
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-68
Identities = 144/475 (30%), Positives = 218/475 (45%), Gaps = 54/475 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
TYK+ YE Q A G E VGI G N P+W A+ A A I V +Y T
Sbjct: 10 TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
P A ++ + +E + + V + K + + L+ ++ + ++KE
Sbjct: 69 PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121
Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
YSW EF+ LG+ I+ Q P CT++YTSGT+G PKGV+L+H+ I
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
+D + +S+LPL+HI ++++ + SVG Y +AL+ L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235
Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
E++PT GVPRV+EKI E +K + L+R+I + L M
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295
Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
LA L F+KV+ LG R + +G AP+S E EF FL ++
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348
Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
YG++ET GP TV P + + G E ++ G GE+C+ G+
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399
Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+F GY + T E+I DGW H+GD+G + +G + I R K LI + GE V
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVP 454
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 5e-56
Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
D+ + +++P L F K TY E+ E + + L+ G + G RV
Sbjct: 3 DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+ NCPQ+ A + VP VN + E++ D K
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
V++ S A+ +G + P ++ +
Sbjct: 99 ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
YT GT+G PKG +LTH + V+ V +D +D +L+ LPL HI
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180
Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
+ +G G N L R ++++ + T+ GVP
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
LY LL + K LRL ISGGAPL
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255
Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
EV E F T LV+GYGLTET TTV D G+ G P+ ++ +E
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314
Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
E+ P + GE+ VRG + GY+ P+ T E + DGW TGDIG + +G I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369
Query: 514 RKKNLIKIS 522
RKK++I +
Sbjct: 370 RKKDMIIVG 378
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-55
Identities = 129/489 (26%), Positives = 187/489 (38%), Gaps = 116/489 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ +ALRA G + G RV ++ N +++EA A + + P+ L P
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ +IL+ AE V V + V L +A ++ T + A +
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145
Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
++E L + + ++YTSGT+G PKGVVL+H
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
K++ DDVYL +P+ H+ A + Y G D
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244
Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
L D + + T VP + M K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271
Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
A D LRLVI GGA L + EF VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318
Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
+V P++ G P V E R+ +E+P G GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369
Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
+ VRG L GY+ P+ T E+I GW HTGD+G I +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428
Query: 528 -ALEYLENV 535
E LE+
Sbjct: 429 YPRE-LEDA 436
|
Length = 521 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 5e-52
Identities = 120/360 (33%), Positives = 184/360 (51%), Gaps = 16/360 (4%)
Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
KE A + GI +D+ K +I P I +I+YTSGTSG PKGV+L+++ +
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330
Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
V V L K +LS+LP++HI +RVI F G ++ + D+N
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
D+ K +LAGVP+VF +I+ I + L PL+R + + + + N G+ +
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444
Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
L + K+K ++ L ++++GG LS ++ E L V QGYGLTET GP
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503
Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
V D+ GP+S ++R E Y D P GE+ ++ ++FSGY+
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559
Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ T+ + DG+F TGDI QI NG + +DR K L+K+SQGEY+ + L N+Y I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619
|
Length = 746 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-47
Identities = 119/481 (24%), Positives = 190/481 (39%), Gaps = 84/481 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T+ ++ ++ L++ LR G + G V + N ++ C A I + P
Sbjct: 12 TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ L ++ +F D + + + + ++ S A ++
Sbjct: 72 DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122
Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
E E E P + ++Y+SGT+G PKGV+L+H+ I ++ +
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176
Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
D + + +DV L+FLP H +
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
+LL G + + + KYK+ + + P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246
Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
+A LA + K L LR++ SG APLS E++E LR + QGYG+TET T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305
Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
T+ P + G+ G + E ++ V E G L GE+CV+G + GY NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362
Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
T+E+I DGW HTGDIG +G I+DRKK LIK +G V LE V P +
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421
Query: 544 D 544
D
Sbjct: 422 D 422
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 6e-44
Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V + +AL A G G RV I+ N P WV A + VPL
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+IL + +FV L D + RL + E+ K
Sbjct: 92 DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ +FL G E P ++ I++TSGT+G PKG +LTH + + + +L
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
+T D YL+ P H+ F RGA++ + D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247
Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
L + T+L G P +Y L + R
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
A L+ L RL ++G A L E L V ++ GYGL+E
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319
Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
G TT D+ + GT G E ++ V E+G + GE+ VRG + G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376
Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
YY +P+ T +I DGW HTGD+G++ G + I+DRKK++
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 97/320 (30%), Positives = 138/320 (43%), Gaps = 60/320 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
+ I+YTSGT+G PKGVVL+H ++ T DV LS LPL H++
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55
Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
G +V Y G L + + + + T+L GVP +++ +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
+ R Y L+ LRL+ISGG PLS
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130
Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E+ E F +++GYGLTET T+ E+ GT G E+R+ V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187
Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
PL GE+ VRG + GY+ NP T + DGW+ TGD+G + G + I R
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246
Query: 516 KNLIKISQGEYVALEYLENV 535
K+LIK+ GE V +E+V
Sbjct: 247 KDLIKVG-GENVYPAEVESV 265
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-42
Identities = 123/468 (26%), Positives = 184/468 (39%), Gaps = 123/468 (26%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ + ++ +AL G PG V N ++V AC + + P+
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ FIL A R RV+ P
Sbjct: 63 RELGFILRQA------------------------RARVLFV------------------P 80
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
+ F + P ++ ++YTSGT+G+PKGV+ TH T+ A S V+
Sbjct: 81 DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+T DDV L PLAHI G+ +G +EL LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
G V + P R + + ++ + + MG A+P LADLLA
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200
Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
LR+ + GGAP+ E +V+ YG+TE TV PD +
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258
Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
T G E+R+ +VP P ++ GE+ VRG LF GY PD T
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310
Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DGWF TGD+G++ +G ++I RKK++I I GE ++ +E++
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDL 357
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-41
Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G TY + Y V ++ +AL + G +PG RV N + +E A + + L
Sbjct: 21 GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
L P + +I++HAE +FV D LL A RL + +M
Sbjct: 81 NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
+ Y+++E L + + P N + YTSGT+G+PKGVV +H ++ T
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192
Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
S + L ++ D L +P+ H+ + Y
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236
Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
+ D +L D + E K T+ AGVP + W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264
Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
+ + L L R+V+ G A + +E+ V ++
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308
Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
+G+TET TV +V G ELR+ E+P G
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
+ GE+ VRG + YYK+P+ T E DGWF TGD+ I +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421
Query: 518 LIKISQGEYVALEYLEN 534
+IK S GE+++ LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-39
Identities = 101/341 (29%), Positives = 147/341 (43%), Gaps = 66/341 (19%)
Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
PP ++ + Y+SGT+G KGV+LTH ++ V + +DV L
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206
Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
LP+ HI +G L + L+ L T++ +PR F+
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
LE+ A+ KYK+ + P+ + VK + + L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278
Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
+ SG APL E+ E F L QGYG+TE+ TT+C E G+ G +
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338
Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 503
E ++ + PE G L GE+ VRG + GY NP+ T E+I DGW HTGD+G
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+G + I+DR K LIK G VA LE + P I D
Sbjct: 397 DEDGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIAD 436
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-38
Identities = 91/342 (26%), Positives = 129/342 (37%), Gaps = 81/342 (23%)
Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
+ L P TI++TSG++G PK VV T G L +T DD +L
Sbjct: 69 LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123
Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
LPL H I+ R GA V D A+ + L T ++ VP
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173
Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
+R+ + A L+ LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192
Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
V+ GGAP+ L L YG+TET T+ D + +G+ G
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
ELR+ + GE+ VRG +LF GY LT DGWFHTGD+G
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ G + ++ R+ +LI IS GE + E +E V P +E+
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEE 338
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 84/331 (25%), Positives = 129/331 (38%), Gaps = 86/331 (25%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I YTSGT+G PKG +LTH + + +T D L +PL H+
Sbjct: 4 PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55
Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
F GA++ + + + T L GVP +F
Sbjct: 56 -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102
Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
+ L FD L G +P+ +L+ R+++
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
A + GYG+TET G T D+ GT G E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184
Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
++ + P+ G P + GE+CVRG ++ GYY +P+ T E+I DGW HTGD+G + +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241
Query: 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
G ++I+ R K++I I G EN+Y
Sbjct: 242 GYLRIVGRIKDMI-IRGG--------ENIYP 263
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-36
Identities = 120/462 (25%), Positives = 167/462 (36%), Gaps = 141/462 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ AL A G PG RV + ++V A + VPL +
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AE+ + + D + L+ P ++ +TS
Sbjct: 73 ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
GT+G PKGVVLTH +A + ++
Sbjct: 98 --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
+ + T DV L LPL H+ HG NAL L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
G F L R FD + L + MG Y + L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191
Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
+ F A LRL +SG A L V E + T L++ YG+TET G
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249
Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
D GT G P+ V E+R+ V E G PL GE+ VRG +FS Y+ P+
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305
Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY 526
T E+ DGWF TGD+G + +G +I+ RK + I I G Y
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGY 346
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-35
Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I+YTSGT+G PKGV+LTH + +D ++ DVYL PL
Sbjct: 3 PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51
Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
YH L P L AG V + + P
Sbjct: 52 ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78
Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
+ D + ++++ L L F + LRL+I G AP
Sbjct: 79 EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126
Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
+ E++ + VQGYG+TET GPTT E + +G+ G E+R+
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185
Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
E+P E+G E+ VRG + +GY+ P+ T E++ DGW HTGD+G +
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235
Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
+G + I+DRKK++I IS G EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-32
Identities = 114/451 (25%), Positives = 167/451 (37%), Gaps = 120/451 (26%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ L+ G G RV +Y N PQ+V A A + VP+
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ IL+ + RV++ + L
Sbjct: 63 AELEHILNDSG------------------------ARVLIVGSEL--------------- 83
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
+++ ++P YTSGT+G PKG + TH T +AT +
Sbjct: 84 ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+T D V L+FLPL H+ G +NA +
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
G V R R A+ +Y++ W N+ + + DLLA
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
+ L++V GGA L V E L+ +GYGLTET T PD
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
PV ++ R+ + PE G L GE+ VRG +F GY+ P+ T ES I
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+F TGD+G I G +DR K +I +S
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 103/518 (19%), Positives = 176/518 (33%), Gaps = 97/518 (18%)
Query: 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
LN A + ++ + F TY ++ EV ++ +AL+ G
Sbjct: 8 LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64
Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
G RV IY N P+ V A+ A + I + L AV + + D
Sbjct: 65 GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
+ + + + V +DE + E +P
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168
Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
++YTSGT+G PKG+V +H + D + +
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
I G ++ + L +G V ++G E
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
R+++AL KYK+ SP L L+ + LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302
Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
+ E E F +++ YG TET P G++G +P
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347
Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
GY+ +DD P GE+ VR + Y+ +P+ +E+ W+ TGD +
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+G + R ++IK+S G+ + +E+V P +
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAV 444
|
Length = 528 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 103/476 (21%), Positives = 167/476 (35%), Gaps = 115/476 (24%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++++ E + AL+A G G RV + G N + V + AC L L L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
L+ ++ + ++ D S R+ + +T +
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ I T+M+TSGT+G PK V T G L
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
T DD +L LPL HI I FR GA++ N L + + + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
++ VP +L +
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211
Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
+ LR ++ GG+ + + E + + YG+TETC + V
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263
Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
EM G E++++ + G+ GE+ V+G L GY +LT
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315
Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GWF+TGDIG++ G + ++ R+ +LI IS GE + E +E V P I++
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHPGIQE 370
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 120/457 (26%), Positives = 184/457 (40%), Gaps = 92/457 (20%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
TYK+++E V ++ + L + G R+ I N +++ + A + I VPL L
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ F L + +FV+ LS S ++ ++ TSL + E
Sbjct: 89 ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
+ F IC YTSGT+G PKG VLT E + F + ++
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
+ F +T+ D + LPL HI G + L PTL
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214
Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
AG VPR FE KAL + + + + A +N +
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
+ V R +GGAP E + EF+ FL QG+G+TET PT +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309
Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
E VG+ G ++ + L + + + GE+ +RG + Y+ PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366
Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
+I DGW TGD+ ++ +G V I+ RKK +I IS GE
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGE 402
|
Length = 496 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 7e-30
Identities = 148/549 (26%), Positives = 223/549 (40%), Gaps = 117/549 (21%)
Query: 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
+D T D++ +V ++ RP +D FG TY E+ ++V + + LR
Sbjct: 25 HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75
Query: 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
A G PG RV I NCPQ + A A L + V PLY P DH A
Sbjct: 76 ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130
Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
+ V+ + ++ ++S + +A QRL + + +L + + T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187
Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
G P W+ + + + P P ++ I+YTSGT+G PKG LTH + A
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247
Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
G V D + L+ LP+ H L + G V D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300
Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
+ D + + PT L GVP ++EKI + A E L
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
+R SG L VE + ++T LV+GYGLTET
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373
Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
P V P + G V V +E+R+ + PE + D GE+ VRG +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427
Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
F GY+ P+ T +S +DGWF TGD+ + +G ++I+DR K LI I+ G V +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486
Query: 536 YCVAPIIED 544
P +ED
Sbjct: 487 LREHPGVED 495
|
Length = 573 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 89/341 (26%), Positives = 125/341 (36%), Gaps = 89/341 (26%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
I+YTSGT+G PKGV+LTH A + L + DDV L+ LPL HI
Sbjct: 83 TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134
Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
NA + LL G V L
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159
Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
R +D + K+ + KQ + D LR V P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207
Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
+ F F LV+GYG+TET P P + G+ G E+R+
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260
Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
EVP GE+ VR +F GYY P+ T ++ +GWFHTGD G+
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+G + +DRKK+ I+ GE ++ +E P + +
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAE 352
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 6e-26
Identities = 128/487 (26%), Positives = 191/487 (39%), Gaps = 101/487 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++E+ + V + AL G G RV I N ++VE++ A N L I VP+ L P
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ F++ V + ++ R L V +++
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
D L + P +I IMYTSGT+G PKG VLTH +
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206
Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
+G D DV +PL HI A +G
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
+ P LL G P V I+ L P ++ D L K+ + + Q +A
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
+ A ++ + R LR++ G AP S + LR F ++ +G TE
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329
Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP--CGEVCVRGKTLFS 477
P T C D + +G+ G V R+ + M D P GE+ R TL S
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMN----DVPVGEVGEIVYRAPTLMS 383
Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
GY+ NP+ T E+ GWFH+GD+ + G V ++DRKK++I IS GE + +ENV
Sbjct: 384 GYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLA 442
Query: 538 VAPIIED 544
P I +
Sbjct: 443 SHPDIVE 449
|
Length = 542 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-26
Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
TY+E+ E ++ LRA+ G PG RV + + V A+ A VPL D
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59
Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
P + FIL+ A + L L + +L
Sbjct: 60 PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
P P ++ ++YTSG++G PKGVV+TH ++ ++ +
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
+ DD L F L+ D ASV E+ L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183
Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
LAG P +E R + + ++ + +N +P L
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
LLA A LRLVI GG L+ V+ + A L+ YG TET T
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277
Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
TA V R VP +G PL + GE+ + G
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327
Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
+ GY P+LT E + F TGD+ + LP+G ++ + R + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 81/326 (24%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSGT+G PKGV LTH+ + + K+T D L+ +PL HI
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
HG + +L TLLAG P F
Sbjct: 56 -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
+ +D + KY++ W + A P LL K RLR + S APL
Sbjct: 81 -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132
Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
V E+ V +++ YG+TE P + G+ G + E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181
Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
V + PL GE+ +RG + +GY NP+ RE+ DGWF TGD+G + +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241
Query: 510 KIIDRKKNLIKISQGEYVALEYLENV 535
+ R K LI GE ++ +E V
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEV 266
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G +++Y E+ EE +I++ LRA G +PG V + +V A AC + VP+
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
+ E + + + + ELL SP + L + A + +
Sbjct: 95 ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
V + S L P +P + ++ TSG++G PK VVLTH I
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192
Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
L + + V DDV L+++PL H+ + H LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
D V ++IH L + PLR D + +Y++ W N +
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273
Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
L D L + ++ LR +I+ G + + FL + + +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328
Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
++ETC T F G GP+ + E V E+G
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388
Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
+ L + G + VRG T+ SGYY+NP+ E+ DGWF TGD+G + +G + I
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447
Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
R+K++I I+ Y E +E P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 125/485 (25%), Positives = 183/485 (37%), Gaps = 109/485 (22%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T++++ + V ++ L A G +PG RVGI+ NC +W+ A + I V +
Sbjct: 47 TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106
Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
+ + L + + +V D ++ELL P Q LR +V
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165
Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
A W E G+ E L P NI YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212
Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
+G PKG L+H I + L L + D++ V +PL H V+
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265
Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
GA + Y D A + E + T L GVP +F + EL +R FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315
Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
LR I GAP EV RV
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338
Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
A + YG+TET + + V T G + E+++ + P+ P
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397
Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ GE+C RG ++ GY+ NP+ T ESI DGW HTGD+ + G V+I+ R K++I
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454
Query: 521 ISQGE 525
I GE
Sbjct: 455 IRGGE 459
|
Length = 558 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
I+D + K+K+ + +P LA+ A K L +R V++ GAP
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295
Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
V ++ F + YGLTET GP TVC E A P + L+
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349
Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
LEEV PE P D GE+ +RG T+ GYYKNP+ T E+ GWFH+GD+
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
+ P+G ++I DR K++I IS GE ++ +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 97/317 (30%), Positives = 123/317 (38%), Gaps = 76/317 (23%)
Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
P P I+YTSGT+G PKGVVL+ IA +D + ++ T DDV + LPL
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179
Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
H+ V+ R G Y + TL GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230
Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
E R LR ARL
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245
Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
LV SG A L V + L V+ YG+TET T D G G E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303
Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
RL V E G P D GE+ VRG TLF GY PD T + DGWF TGD+ +
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361
Query: 505 PNGVVKIIDRKK-NLIK 520
P+G+ +I+ R+ +LIK
Sbjct: 362 PDGMHRIVGRESTDLIK 378
|
Length = 471 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
P ++ + YT GT+G KG L H I V ++ +L +K D ++ L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259
Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
PL HI + +G G N +L PR I
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293
Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
++EL+ + IF A+ A +N +P D L F K+ GG G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
E +L +T C + +GYGL+ET P C P D GT G P+ S +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
+ ++ PL +P GE+C+RG + +GY+ PD T + + DG+F TGD+G + G
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451
Query: 510 KIIDRKKNLIKIS 522
KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464
|
Length = 557 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 2e-21
Identities = 125/467 (26%), Positives = 189/467 (40%), Gaps = 79/467 (16%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
T+ +++V + + L+ G E G RV I NCPQ V I V PLY
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
L IL +D VF + V+ + R+ + F +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167
Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
+Q + V+ S E +HL E E+ +P P N + + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222
Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
GV+LTH+ + VS + + + ++V L LP H+
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261
Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
+G + +M+ +L +P+ + + E IKK L P I+ AL
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313
Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
SPL +K +R ISG APL EV+E LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355
Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
GLTE+ T F E + G+ G +E + + E G L GE+ V+G +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413
Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
GY+ P+ T + DGW HTGD+G + +G + DRKK++I S
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVAS 460
|
Length = 563 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 7e-21
Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)
Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
PQ ++ + YT GT+G KG +LTH +A + L + ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260
Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
HI Y F G+ N L + PR + ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294
Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
EL + F L +A N EA FRK+ L+L +SGG L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338
Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
E + VT CA +GYG+TET P P + VGT G PV S ++ ++
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
E+ PL + GE+CV+G + GY++ P+ T E + DGW TGDI I +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451
Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
+DRKK++I +S G V LE+V P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479
|
Length = 562 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 8e-21
Identities = 100/337 (29%), Positives = 147/337 (43%), Gaps = 67/337 (19%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
P ++ + YT GT+G PKG +LTH + + VS D++ + T DV + LPL
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248
Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
HI VI RRG + + D+ A+ D+ E + T+ GVP ++ AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
L +R +L A +G SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323
Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
L EV F L G+G+TETC P T P+ G P S+ L L + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375
Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
+ LDDP P GEV +RG + GY+ P+ + E+ + F TGDIG + +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435
Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
++DRKK++I IS G V + +E P +++
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQE 471
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 123/473 (26%), Positives = 187/473 (39%), Gaps = 84/473 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ V ++ L G G V N ++ AC+ + + PL
Sbjct: 57 TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++F+L HAE V V K + A+RLR + + V G
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167
Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
S++ L + E E IL P P ++ ++YTSGT+G+PKGV+ T T I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
+ + L DDV L P+AH G+ +G
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
+ + P +L G V + I + +A E +R + + M +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293
Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
+P L DL K R LR + GAP+ + E R A +V +G+TE T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353
Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
PDE T G E+R V + +PL G + VRG + F GY K
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409
Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
P L DGWF TGD+ +I +G ++I R K++I I GE + + +E +
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 5e-20
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 21/172 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
+R+V+SG APL E+E+ R A L QGYG+TE GP MC+
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPV 353
Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID 492
G+ G V +EL++ + PE G S L GE+C+RG + GY +P+ T +I D
Sbjct: 354 KSGSCGTVVRNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKD 411
Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GW HTGDIG I + + I+DR K LIK +G VA LE + P I D
Sbjct: 412 GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD 462
|
Length = 537 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 88/340 (25%), Positives = 136/340 (40%), Gaps = 91/340 (26%)
Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
+++TSGT G PKGV+LTH I + + ++L T DV++ PL H
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
+ G+ HG + L G V I L L
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
+ + M +G A+P + DLL K A L LR + GG + +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317
Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
V C L+ YG TE+ P V D+ + T G + V E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371
Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
R + +P P C GE RG +F GY P+LT ++ +GW+++GD+ ++
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
G +KI RKK++I + GE ++ +E++ P I D
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHD 460
|
Length = 547 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-19
Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)
Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
YGLTET GP TVC P + G P V+V ++ VP
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
D GE+ RG + GY KNP T E+ GWFHTGD+ + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440
Query: 518 LIKISQGE 525
+I IS GE
Sbjct: 441 II-ISGGE 447
|
Length = 545 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-19
Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)
Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
+ + L G+ ++ +P +I + YT GT+G KG +LTH + + V L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245
Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
D + +V ++ LPL HI Y F G+ N L +
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
PR I ++EL R L +A M+ G+K + S
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333
Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
L+L SGG L E + ++T C +V+GYGLTET P P
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380
Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
E+ +GT G PV P +DD GE+C++G + GY++
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429
Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
P+ T E++ +GWF TGDI I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470
|
Length = 562 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-19
Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)
Query: 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
T DI S ++YP L FG W TY E+ V ++ +AL G + G
Sbjct: 11 QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61
Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
RV G N + AC + VP+ L + +ILDH+ V
Sbjct: 62 DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117
Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
L+P +A L + + + P W +F + + P
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168
Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
++ I+YTSGT PKG +LTH IA +VS V M+ DD+ L LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221
Query: 276 AH 277
H
Sbjct: 222 YH 223
|
Length = 523 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 7e-19
Identities = 117/481 (24%), Positives = 175/481 (36%), Gaps = 89/481 (18%)
Query: 59 RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
RP + FG W TY E AL A+G + G RV + N ++++
Sbjct: 32 ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88
Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
C L I VP+ L + IL ++ + V+ + L + D V
Sbjct: 89 LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146
Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
L ++V G +S L P QP + I+YTSGT+G
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195
Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
KGV H A F S DL + DDV + LPL H
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233
Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
NAL LLAG V E R + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266
Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
+ + Y + LL+ ++ R+R+ + G P + F R
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319
Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
L+ GYG TET V + G+ G ++ E R+ V E L D GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374
Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
R F +GY+ P+ T E+ + WFHTGD +G + +DR K+ I+ +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433
Query: 528 A 528
+
Sbjct: 434 S 434
|
Length = 542 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 7e-19
Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
+ +T GT+G PK +H L + DV L+ LPL H+
Sbjct: 4 LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58
Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
+ + RGA+V G+ + A+ + ++ + TLL+ VP V
Sbjct: 59 IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
LA LL A + LR
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127
Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
++G APL EV F VT +V+GYG+TE G + + G+ G Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186
Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
R+ ++ G D P G + +RG +F GY + + DGW +TGD+G+I
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246
Query: 506 NGVVKIIDRKKNLI 519
+G + + R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E Y+ ++ SAL G G V + N P +EA + VPL L
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
+ FIL+H+E +FV D++ L + + S AE E
Sbjct: 91 DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+++ L G + + I P ++ ++ YTSGT+G+PKGVV TH +++ +
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199
Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
+ E M VYL LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 2e-18
Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ L + G PG V I + V A+ A VPL
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ +IL+ + + Q L D L A+ +
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ + + + + I+YTSG++G PKGV + H +A ++
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
+F + DD L+ L+ D + E F GA + D AL + L
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456
Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
T+L VP + + L
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
+ + RLR ++SGG L + + L L+ YG TE T+ P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529
Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
V + + ++ + G PL GE+ + G L GY PDLT
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589
Query: 488 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
E I + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624
|
Length = 642 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-18
Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 71/326 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSG++G PKGV ++H +A+F+ + D +T DV+ + P
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
F DL+ + +L P L +G +P+ E I L
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179
Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
+F+ L ++ L W+++ S + LL R++ LR + G L +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229
Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
+ R A ++ YG TE T E + P+ LR +
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287
Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
E G P+ GE+ + G + GY NP+ T ++ W+ TGD+ + +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346
Query: 510 KIIDRKKNLIKISQGEYVALEYLENV 535
+ RK IK+ G + LE +E
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAA 371
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 3e-18
Identities = 106/457 (23%), Positives = 171/457 (37%), Gaps = 76/457 (16%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ EEV + +ALR G E RV + + P++ A + + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ L+ + + + +++ E+L P + LR ++ A
Sbjct: 92 DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ + E+E ++ +Y+SG++G PKGVV H + + +
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195
Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
+T DDV S L A+ L + YF GA+ + K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
PT+ GVP LY A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
A + R LRL +S G L E+ + ++ G G TE P
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326
Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
GT+G PV Y E++L V E G + D GE+ VRG + +GY+ + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
W TGD +G R +++K+S G +V+
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVS 418
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 93/347 (26%), Positives = 143/347 (41%), Gaps = 61/347 (17%)
Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
E L LG+ + M L +P +I + YT GT+G KG +LTH + + +L
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249
Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
+V ++ LPL HI F + G N L + PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
+ ++EL+ R F + N + +P D + F +K L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335
Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
GG G A + E + +VT LV+ YGLTET P P + + G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384
Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
+ +P DD GE+C++G + GY+K P+ T + + DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
W HTGDI ++ G V I+DRKK++I +S G V +E+V + P
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMP 483
|
Length = 560 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-17
Identities = 117/532 (21%), Positives = 174/532 (32%), Gaps = 158/532 (29%)
Query: 57 GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
GNR FVDG VL + + L G G V I N ++E
Sbjct: 29 GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72
Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
+ A I PL N+ E + V D+ EL +
Sbjct: 73 WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123
Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
S +V + S + EM Q + Y+W
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
P + I +TSGT+G PKGV ++H + Q K+ + DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215
Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
YL PL HI G L++ LM G V
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
+ K FDA K A + KQ + + ADL++ RK
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284
Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
+R +++GG LS+ + + ++ A L YG+TE C T + +
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344
Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
+ ++ + V E+ + G + RG + GY+
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404
Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
T + DGW TGDIG I G + +I R + IK + GE V E +E V
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAV 455
|
Length = 563 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-17
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
LR++ GGAPLS E+ + L Q +G+ E G V + P ++ M T
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310
Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
G P+S E+R+ E VP GE+ RG GYY+ P+ +
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
DG++ TGD+ +I +G +++ R K+ I GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-17
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
L+L + GG + V E ++++T +L++GYGLTE C P P D G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383
Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
V S +L ++ E+ P +P GE+ V+G + GY++ P+ T E I DGW TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438
Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
I + G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461
|
Length = 560 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
+G AP L E+ RVT YGL+ET GP+TVC P+E +
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371
Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
V L+ V M P D GE+ +RG + GY KNP E+ +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
FH+GD+G P+G ++I DR K++I IS GE ++ +ENV P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478
|
Length = 567 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
+ Q YG+TET T+ D + +G+AG EL++E+ D
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331
Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GE+ V+G + GY D TRE+ DGWF TGDIG + G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390
Query: 525 EYVALEYLENVYCVAPIIED 544
E + +E V P + +
Sbjct: 391 ENIYPAEIEEVLLSHPGVAE 410
|
Length = 483 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 6e-17
Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I ++SG++G+PKGV+LTH+ + T + + ++T +DV+LS++PL H
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158
Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
+G L + + L PT R+F + RPL
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190
Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
D +++ + N GYK E DL + R L+ +G P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239
Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
+S ++ EEF LR + YGL E V FP
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294
Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
D + V P+ E+R+ V + G L D G + ++G +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350
Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
SGYY NP+ T++SI DGW TGD+G + NG + I R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 6e-17
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
LRLV++G L E +++GYG TE +V P GT G
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
E+R+ + L G + VRG + SGY N + T E + DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
+I +G + I+ R K KI GE V+L +E
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVE 407
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 9e-17
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
L I GG + + +F RV A + YGLTETC G T + E+ +G+ G
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
+ E+R+ + + P + GE+C+RG + GY+K+P+ T E+ WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380
Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV-YCVAPIIE 543
G + G + + DRKK++I IS GE +A +E V Y + + E
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAE 423
|
Length = 497 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 83/319 (26%), Positives = 115/319 (36%), Gaps = 77/319 (24%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
I +YTSGT+G PKGV+ H TF + F + + D S F
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145
Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
L + L F GAS G A+ D L +PT+L GVP ++
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
LL A L +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
S G L + E ++ G G TE P GT G PV Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272
Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
L V E G G++ VRG +L GY+ P+ T+ ++ DGW TGD +G
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329
Query: 509 VKIIDRKKNLIKISQGEYV 527
+ R ++IK+S G++V
Sbjct: 330 YRYQGRADDMIKVS-GQWV 347
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-16
Identities = 126/529 (23%), Positives = 188/529 (35%), Gaps = 177/529 (33%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
GP V TY ++++ L++ AL G + G RV N + +EA + IC +
Sbjct: 35 GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94
Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
L P + +I++HAE D FV + E ++ S +R V+
Sbjct: 95 NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151
Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
V + AE ++W F + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189
Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
GDPKGV+ +H + A + D + D L +PL H
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243
Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVF 323
LD GASV EL K T AGVP V+
Sbjct: 244 MGTKLVMPGAKLD----------GASV--------------YELLDTEKVTFTAGVPTVW 279
Query: 324 EKIHEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPL 368
+ + ++K +L L+ R + A + AW M E SPL
Sbjct: 280 LMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPL 333
Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
L A + ++L G RL + QGY P V
Sbjct: 334 GTLAALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV-- 365
Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
EM + AG +E+P D G + VRG + + YY+
Sbjct: 366 --EMKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG---- 403
Query: 489 SIID--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
I+D G+F TGD+ I G ++I DR K++IK S GE+++ LEN+
Sbjct: 404 EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)
Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
T GT+G PK TH E ++ + L L D LPL H+ V
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273
Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
RGA V GY + + ++ + L+GVP V
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
A LL V LR + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344
Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
L EV F T +V+GYGLTE TC ++V PD +G+ G Y +R+ +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402
Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
+ G D G +C+ G +FSGY N L E DGW +TGD+G+I +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459
Query: 508 VVKIIDRKKNLI 519
+ R K+LI
Sbjct: 460 YFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 4e-16
Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
P + ++YTSG++G PKGVV+TH I F+ D L F +A
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
D I E F TLLAG V E E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
LR ++ +P L LL V LR +I GG
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218
Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
+ + L+ YG TE + P + +G P+ Y+ L
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272
Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
P +P GE+C+ G + GY P+LT E I + +
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 5e-16
Identities = 56/170 (32%), Positives = 80/170 (47%), Gaps = 35/170 (20%)
Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
V++GG+P L +V+ F V YGLTE GP C P+ M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358
Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
+ V V ++ E VP D GE+ ++G ++ GY KNP
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412
Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
T E+ GW +TGD+G I P+G V+I DR K++I IS GE ++ +ENV
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461
|
Length = 579 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 5e-16
Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
P ++ ++YTSG++G PKGV++ H + ++ +++ +T D L F +
Sbjct: 91 DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145
Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
D + E F GA++ D AL + L E + T+L VP + +
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
L+ L P LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214
Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
GG L E V + + A LV YG TET T +G
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274
Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
VY E L VP GE+ + G + GY P+LT E + F
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325
Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + LP+G ++ + R + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 5e-16
Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
+ +TSGT+G PK V+ TH + +LD D + T+ D + S
Sbjct: 83 PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142
Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
P GA+V YHG +A R + L T P +
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
R L ++ DL ++ LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203
Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
S G PL+ EV ++ R + GYG TET G FP G+ G P Y R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259
Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
+ + + G P + G++ VR K LF GY K+P+ T +I W+ TGD
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317
Query: 504 LPNGVVKIIDRKKNLIKIS 522
+G + R ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 8e-16
Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
LR VI GAP+ ++ LVQ +GL E G TV P +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341
Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
G E M DD PP GE+CV G +F+GYY NP+ ++
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DGWF TGD+G + G + I R ++ IS G NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428
|
Length = 528 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 17/202 (8%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY + E VL + S LR G G RV IY + V AM + VP+ L
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V IL + + V + +LL P LR ++ + G +P
Sbjct: 87 EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
SW + L LG PP P ++ I+YTSG++G PKGVVL+H + V
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197
Query: 255 FLDQFEDKMTVDDVYLSFLPLA 276
+L+ DD L+ LPL+
Sbjct: 198 YLE-----NRPDDRLLAVLPLS 214
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 5e-15
Identities = 63/168 (37%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
+L+ +++ APL+ E+ VQ YGLTE +C T P++ G A
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361
Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
SV L EV P+ G S + P GE+CVR + + GYY N + T +I DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
TGDIG I +G + I+DR K LIK +G VA LE + P +ED
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVED 467
|
Length = 546 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 103/353 (29%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
++ I+YTSG++G+PKGV+L+H + + +L+ +T DD L+ LP +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54
Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
+Y FR G ++ + L L + + T AGVP + +
Sbjct: 55 ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104
Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
L L PL R F + LR
Sbjct: 105 ------LLRLDPLAREDFPS-------------------------------------LRY 121
Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
+ + G L + + + R A L YGLTE +T P+E +G A P
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178
Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
EL + + D C GE+ RG + GY+ +P+ T E +
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ +TGD+ ++ G + + RK ++IK ++G V+ +E V C P++ +
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAE 281
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-15
Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
P+ W + V++ + P ++ I++TSGT PKGV LTH A ++ L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
F K DDV +SFLP H Y F L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248
Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
+GVP VF +KI E I +A FD + + KQ P
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
LR V+ GG + +E L+ L QGYG TE C P
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344
Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
TV P VG P+ + + V E P+ G V RG +LFSGY D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398
Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
+ + + W+ TGD+G + +G + + R +KI E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 64/169 (37%), Positives = 82/169 (48%), Gaps = 43/169 (25%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDE 431
+RL ISG APL E EF T A L + YG+TET T TV FP
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP-- 326
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRE 488
+ G LR+ + PE G + L P GE+ V+G +F GY++ P+ T E
Sbjct: 327 --LPGV--------SLRVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAE 371
Query: 489 SI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
DG+F TGD+G+I G V I+ R K+LI IS G Y NVY
Sbjct: 372 EFRADGFFITGDLGKIDERGYVHIVGRGKDLI-ISGG-Y-------NVY 411
|
Length = 504 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
GE+ VR +L GY+ P+ T E++ DGW HTGDIG+I G + + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471
|
Length = 567 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 3e-14
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
YG TE P TV P+E + G+AG + E R+ +V E+G
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
E+ R L GY+ +P+ T E+ GWFH+GD+G + G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426
Query: 526 YVA 528
VA
Sbjct: 427 NVA 429
|
Length = 523 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-14
Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
++TSG++G PK V+ TH + + + ++ V + +LP H
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225
Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
+ V+ + G V G + L LR E+ PT+ VP+ FE + + AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
E LRRR F RLRL+ GA
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300
Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
L +V + L R+ + G G TET T +P + +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351
Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
+ EL+L VP G EV V+G + GY+++P+LT E+ +G++ G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400
Query: 499 D 499
D
Sbjct: 401 D 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)
Query: 78 TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
+Y+E+ EE ++ L + G G RV +Y N PQ+V A A + + VP+
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
+ + + V + KV + RLR ++ + +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147
Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
I +W G V E L PP P ++ + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207
Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
+ TH T+ A V V T + V L+ LPL H+
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244
|
Length = 546 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
L+ V G APLS + +++F++ +QGYG+TE+ VGT G
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366
Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
+S YS + L P M +D PP CGE+ ++G + GY NP T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425
Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
I DGW TGDI +G + I+DR K +IK +G +A LE V P I D
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIID 480
|
Length = 560 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ E++E V+ + L A G + G RV + N + + + A L + V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ + LD AE+ + D + L P V F L KE +
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
+ DE + TIMYTSGT+G PKGV+ T+ + S V L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175
Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
+ +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194
|
Length = 483 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 81/308 (26%), Positives = 116/308 (37%), Gaps = 65/308 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
++YTSGT+G PKG + H + + GV+L+ + DV+ + A I
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
L D L+ P L GVP V R +
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167
Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
FD + A M Y A P A L R+V +AR RLR V SGG L E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E+ R + + YG TE C P +G P + V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278
Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
P+ GE+ V+ +F GY+ NP+ T W TGD+G+ +G + R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337
Query: 515 KKNLIKIS 522
++IK S
Sbjct: 338 ADDVIKSS 345
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 110/476 (23%), Positives = 177/476 (37%), Gaps = 76/476 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ V +I L G G V N ++ AC + + PL
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
++F+L+HA+ VFV + L LR +V + +
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170
Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
+ T + + D L P P ++ ++YTSGT+G+PKGV+ T T+
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
S + + ++ E + DV L P+AH G+ +G LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256
Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
P +L V + I + A E +R + + L
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
DL K L + GAP+ + E A +V +G+TE G TV P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355
Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
D E P+ E+++ + S + G + VRG + F GY K P L
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411
Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+GWF TGD+ G ++I R K++I I GE + + +EN+ P +
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAV 465
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
GE+C++G KT+F YY +P T + + DGW HTGD G + G +DR+ N+IK
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426
Query: 522 SQGEYVALEYLENVYCVAPIIED 544
GE V+ LEN+ P I+D
Sbjct: 427 G-GENVSCVELENIIATHPKIQD 448
|
Length = 517 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ EV ++ S L A G G RVGIY P+ V A+ A + I VP++ GP
Sbjct: 9 TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AV L AE + D
Sbjct: 69 DAVATRLQDAEAKVLITADG---------------------------------------- 88
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
FL GK +++ P I+YTSGT+G PKG V TH
Sbjct: 89 -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
LR + S APL+ E + L+ A +V +G+TE T V + G
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356
Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
V + ++ V G PL GEV +RG T+ GY +P +T + DGW TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415
Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
G + G + I R K LI GE ++ E +E V
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGV 449
|
Length = 534 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
D LA + R LR + GGA + V E L+ V+GYGLTET T P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351
Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
D C+ + T G P + LEE+P GE+ V G +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397
Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
Y+ P+ T E+ I DG +F TGD+G++ G I DR K +I S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445
|
Length = 546 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-12
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
TY+E EEV + L A G E G RVGI+ N P+WV A + I V P Y
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
+ + L+ + + D + EL P+ + + + L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153
Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
+ G + ++DE L LG+ + L P + I YTSGT+G
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 235 PKGVVLTHETI 245
PKG LTH I
Sbjct: 214 PKGATLTHRNI 224
|
Length = 559 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 9e-12
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GE+C RG ++ GY+ +P+ T E+I DGW HTGD+ + G V I+ R K++I I G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457
Query: 525 EYVALEYLENVY 536
EN+Y
Sbjct: 458 --------ENIY 461
|
Length = 559 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
L V G +P+S + E + F Q YG TE T + + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341
Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
G + + L EV + GE+CVRG + GY+ P+ T E+ DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
W HTGD+ + +G I+DRKK++I ++ G
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGG 423
|
Length = 524 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 79/323 (24%), Positives = 123/323 (38%), Gaps = 77/323 (23%)
Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
L F MYTSGT+G PKGV + +A F + + +D + DDV+ +
Sbjct: 86 LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134
Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
A G+ +G A+ P L G+ VF EG A
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
+D L + + N SP A +R + A R+ +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209
Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
S G PL+ EV + + + YG TET V + AG P+
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
Y L++ + PL D G++ + + FSGY+ +P+ T E I W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323
Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
+ + +G I R ++I +
Sbjct: 324 LVERDEDGYFWFIGRADDVIISA 346
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 28/158 (17%)
Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
L + +GGAP + E +++ + + G+G++E T + ++
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303
Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
G AG + + R+ V + G +D P G E+ +RG L GY++ P T +
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357
Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
DGWF TGDI + +G ++DRKK++ IS GE V
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENV 394
|
Length = 488 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)
Query: 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
+T+ E Y ++ SAL G G V + N P VEA + L
Sbjct: 42 RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101
Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
L ++ F+L H E + V D + E+ + +V
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160
Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
E + +G ++W LP ++ + YTSGT+G+PKGVV H
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ M VYL LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234
|
Length = 545 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E ++ LRA G PG V + P+ V A+ A VPL
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ F+L+ + + + +V +
Sbjct: 74 ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ +MYTSG++G PKGV + H + V + ++
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163
Query: 258 QFEDKMTVDDVYLSFLPLA 276
DD +L PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 91/460 (19%), Positives = 138/460 (30%), Gaps = 106/460 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+ E+ V ++ + L A G G RV ++ NC +WV AC L + +
Sbjct: 37 SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96
Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
V IL ++ V + + PD R +V +
Sbjct: 97 HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
+ + L + +++T SGT+ PK V +L H
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
G D V L+ LP +
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFCGVFG----------------------- 236
Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
L L G P V E + + + +AL R + RRI D
Sbjct: 237 ----FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287
Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
+R P A L F LG L + G PL S+EV+ +
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335
Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
P T + G E R+ + L D GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380
Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
+R +L GY NPD T ++ DG+F TGD+G +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420
|
Length = 540 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 75/360 (20%), Positives = 138/360 (38%), Gaps = 35/360 (9%)
Query: 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
+ +++ SV ++ R LG + G W TY V ++ S L A G PG
Sbjct: 427 RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482
Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
+G+ V AC +PL +G G + ++D +I VF V
Sbjct: 483 DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
+L+ CRS ++L +V S E + I ++ G+ + +P +
Sbjct: 540 AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593
Query: 220 FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
++T S + V +TH + +S + F+ + V
Sbjct: 594 HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649
Query: 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
F P A + +RV F G++V D L+ ++ +PT+L P +F
Sbjct: 650 -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
+ +A E + +F+ ++ + +N+ R S L + FR + LGG + ++
Sbjct: 707 LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763
|
Length = 1452 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
Query: 385 LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
LR V +G + E + +R+ ++GYG+TET P GT
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961
Query: 439 GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
G + E RLE VP + G G + VRG + GY + NP E DGW
Sbjct: 962 GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+ TGDI I G + I R K KI+ GE ++L +E
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ +V ++ +ALR G + RV + + + A ++ V L L
Sbjct: 32 SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++L+ + VFV ++ ++ + L V A + ++A
Sbjct: 92 DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
E L + + Q + +Y+SG++G PKGVV TH A + L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
+ + DDV S L FF G NAL T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
V G L RP +FD L +++ + Y A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
LA + A RLRL S G L EV + + +V G G TE P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326
Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
+ GT+G PV Y RL V + G P GE+ + G + + Y+ N TR++
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381
Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
W +GD +G R +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
LRLV++G L EV + AF +++GYG TET +V PD +
Sbjct: 900 LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952
Query: 434 --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
VG P V+V R+ V + L G + + G + GY +P+
Sbjct: 953 RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006
Query: 485 LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
T E I D GW+ TGD G + +G + I DR KI GE V L +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058
|
Length = 1146 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 5e-10
Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
++TSG++G PK V+ TH + + ++ V + +LP H
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270
Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
L V+ G + Y D D +L E+ PT+ VP+ +E +
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319
Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
ALE LRRR F RL+L+
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342
Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
GA LS +V + L R+ G G+TET T P AG
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393
Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
+ + P E+ P+ EV V+G + GY++ P+LT E+ + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444
Query: 498 GD 499
GD
Sbjct: 445 GD 446
|
Length = 614 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
P D G++ VRG + Y++ ++DGWF TGD+ I +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434
Query: 519 IKISQGEYVALEYLENV 535
IK S GE+++ +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 102/477 (21%), Positives = 161/477 (33%), Gaps = 130/477 (27%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ + ++ L A+G P VGI + V + A VPL
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ ++LD + + + Q + +L P LR + L + +G P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
+ P N+ ++YTSG++G PKGV ++H +A +V + L
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
+ DD L A D + E F GA++ D A + +
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746
Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
T+L VP + + + + RP R + EA + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
LA R G R L+ YG TE TTV
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811
Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
EL EE G P+ P P GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861
Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
L GY++ P LT E + DG + TGD+ + +GV++ + R + +KI
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI 918
|
Length = 3956 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 32/204 (15%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ I + L+A G PG RV + +V A C I VP
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
G + IL A V V L + L +++ A A+
Sbjct: 84 GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
W PP P +I + YTSG++G PKGV++TH + ++ +
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178
Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
F + DDV +S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++++EV + LRA G + R+ + N WV A AC ++C+P+
Sbjct: 4 SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+L+ A D + D PD SA T
Sbjct: 61 QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
D ++ L P I YTSG++G PKGV L+ + T V L
Sbjct: 93 LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
+ + + +L LPLA +L+ + Y GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
L+L+ GGA S + L Q +G+ E V + P E+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
P+S E+R+ V + G +P+ G + RG F GYYK P+ + +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
D+ ++ P G + ++ R K+ I GE +A E +EN+ P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
GR L + GG L ++ E L T L YG TET +T T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263
Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
+ VY +L+ VP G GE+ + G + GY P+LT E +
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313
Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ TGD+ + P+G ++ + R + +KI
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI 348
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 9e-09
Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ I +ALRA+G PG V + + + A+ VP+
Sbjct: 14 TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
IL A V + A L V+
Sbjct: 74 ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
D P ++ +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 9e-09
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E ++ L A G PG VGIY N ++VEAM + V +
Sbjct: 30 TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89
Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 193
+ ++LD ++ + + + +V E+L +LR +V + AV
Sbjct: 90 DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
+++ L G E + P ++ ++YT GT+G PKGV+ E D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187
Query: 254 LFLDQFE--DKMTVDDV 268
+F D T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204
|
Length = 533 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY ++ + + + + A A G G V + N P+ + A+ A L L+ P
Sbjct: 39 TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94
Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
G+++ DHA + ++D + L+ +R ++ A +K
Sbjct: 95 LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135
Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
L LG V + L P P +I + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190
Query: 243 ETIATF 248
+IAT
Sbjct: 191 RSIATM 196
|
Length = 524 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ AL A G P VGI AME + ++ V L L
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624
Query: 138 GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
G LD ++ ++D LL+ QRL + SL ++ E
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
W+ G + P N+ ++YTSG++G PKGV ++H + V+
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722
Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
+ +++E +T DD L F+ + D E + GASV +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770
Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
L A +IHE + +F +Y +LA A
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806
Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
+ + R G A + R +L GYG TET
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856
Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
C M + G S Y V + +PL GE+ + G+ + GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909
Query: 482 NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
P LT E + F TGD+ + +GV+ + R + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957
|
Length = 5163 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
L V GA + V E + V YG TE + P GT +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326
Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
SE+R+ + L + GE+ V F+GY P T E + DGW+ T D+ +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386
Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
P+G V+I+ R ++I IS GE + +E V AP
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAP 422
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)
Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
L+ V+ GGA + E+ E + C C GYGLTE +TVC D + VG+
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294
Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
P E++L + GE+ +RG +L GY++ L + +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
T D G+ NG + I+ R NL S GE + E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372
|
Length = 458 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G W T++E+ V + +AL A G G R+ ++ NC Q E+M A L + VP
Sbjct: 29 GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
NF E+ ++ A R M+C
Sbjct: 87 --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123
Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
+ V G ++ + HLG +V + P C +TSGT+G PK
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180
Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
VLTH +A ++ DL T D L PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217
|
Length = 528 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-08
Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
N+ ++YTSG++G PKGV ++H + +++ D L F+ +
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197
Query: 279 LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
D E++F GA V +RDD + L + R G+
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
F +Y +LA + +R+ P A +R+ GG +
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274
Query: 397 TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
+ +L GYG TE + C P + C G A P+ R +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332
Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
+ + L GE+ + G+ L GY P LT E + F TGD+ +
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392
Query: 505 PNGVVKIIDRKKNLIKI 521
+GVV+ + R + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409
|
Length = 5163 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ + + AL G RVG NC + +E + A + + PL L
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ I++HAE D V V D ++ E L + +R +V A+ + GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158
Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
YS++ L G+ + P I Y++GT+G PKGVV +H + ++ + L
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214
Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
D +T + +L +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237
|
Length = 576 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 94/484 (19%), Positives = 151/484 (31%), Gaps = 87/484 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
TY EVY+ +++ LRA G G RV G N + +EA +++ L
Sbjct: 26 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
P + +IL+HAE + LL + + K
Sbjct: 85 PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
E + + C + YT+GT+G PKGVV +H + L
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189
Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
+ V L +P+ H+ + + +
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239
Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
T AGVP V+ + E K + G
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
++ L+A + + + G TE +
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316
Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
+E + + + + E P D GEV ++G + GYY
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376
Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
N + TR DG+F TGDI G V+I DR K+LIK GE+++ LEN P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435
Query: 541 IIED 544
+++
Sbjct: 436 KVKE 439
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
LR + G PL+ EV F T L++G+G TET T+ M G+ G
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
P Y ++ + G + GE+ +R GK LF GYY++P+ T E DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+HTGD + +G + + R +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
LRL+ GGA LS + + L Q +G+ E V + P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361
Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
P+S E+R+ V G +P+ GE+ RG GYY+ P+ + DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418
Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GD+ + P+G + + R K+ I GE +A E +EN+ P + D
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHD 464
|
Length = 542 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E V ++ + L A G PG RV + NCP+++ A A N L + VP+ L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 138 GAVNFILDHAEIDFVFV 154
+ ILDH+ + V
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
++ IMY+SGT+G KGVVLTH ++ V+LF+ Q+E + D+VYL+ LP+
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254
Query: 277 HI 278
HI
Sbjct: 255 HI 256
|
Length = 560 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
L+A + LR V GGA +S + + L + + +GYGL+E ++
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280
Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
P G+ G + ++ + D GE+ VRG +L GY P T
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324
Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
D W+ TGD+G + G + I RKKNLI S G V+ E++E+ AP I
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIA 376
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
PL + G +CVRG +L SGY+++ + DGW TGD+G +L +G + I R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462
Query: 518 LIKI 521
LI I
Sbjct: 463 LIII 466
|
Length = 579 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 81/300 (27%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
++TSG++G PK V+ T + ++ + + V L ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282
Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
+ ++ + G + G + + LR E+ PT+ VP + + E A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334
Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
E+ LRR F LRL+ GGA
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357
Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
LS ++ E ++ GYG TET PTT + VG G EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416
Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
L P G EV V+G + GY+K+P+LT + +G++ GD + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463
|
Length = 624 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ E + + L + G G RV P+ A L + PL+ GP
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
I D E+ +V++ L + +
Sbjct: 62 EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
LH +TSGT+G PKGV+ H + + LD
Sbjct: 93 -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126
Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
D + T D Y PL + G ++ G+ +A R
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
L E K T+ P LR L R + +Y L
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
LR + S G PL+ EV + + + TET
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250
Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
+P G+ G E + E G +P+ P GE+ ++ ++F GY N
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310
Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+ S +DGW+ TGD+ +G + R ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
LR ++ GG LS V L L+ GYG TE TT C + + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298
Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
+ +VY E + + G E+ V G L GY P+LT E
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348
Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ G + TGD+ + P+G ++ + R +KI
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI 386
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
N+ ++YTSG++G PKGV + H +A + + ++ +D L F+ +
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288
Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
D E + TL+ G V + + EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319
Query: 338 RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
RI A + + L L + + GG +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363
Query: 396 ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
E+ R L GYG TE CG VC + S+Y
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423
Query: 446 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
+ +L VP +G + GE+ + G L GY++ P LT E + F T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475
Query: 498 GDIGQILPNGVVKIIDRKKNLIKI 521
GD+ + +GV++ + R + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499
|
Length = 3956 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
G LR+ ++GG P+ + E F YGL E+ TV P D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
E+ +G +V + + P G + + GE+ +RG ++ SGY
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391
Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+ D WF TGD+G ++ G+V + R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424
|
Length = 525 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V ++ + LR G G R+ + N V AC + I VPL
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
N+ L +E+D +QD + + LL D +A R + + A A++ P
Sbjct: 78 ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
+PP+ ++ I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156
|
Length = 488 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E + + LR G G RV ++ NCPQ+ L + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
+++ L+ A + + D+ + R+ LR V TSL T +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176
Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
+ + L L LP P + + YT GT+G PKG T
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236
Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
T A V + + D V+LSFLP
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 48/182 (26%)
Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGLTETC----------G 422
R+ +G P+ + +E F F G YGL E G
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE----RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAG 325
Query: 423 PTTVCFPDEMCMVGTAGP-----------VSVYSELRLEEV----PEMGYSPLDDPPCGE 467
P + + G A VS L EV PE PL D GE
Sbjct: 326 PVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPE-TRRPLPDGEVGE 384
Query: 468 VCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ VRG ++ +GY+ P+ T E+ GW TGD+G L +G + + R K+LI
Sbjct: 385 IWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG-FLHDGELYVTGRLKDLII 443
Query: 521 IS 522
I
Sbjct: 444 IR 445
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
GE+ VRG + + YY +P D DGW TGD+G + +G
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445
Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
+ I DR +++I+ S GE++ LEN AP +
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEV 478
|
Length = 576 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 9e-07
Identities = 66/314 (21%), Positives = 110/314 (35%), Gaps = 67/314 (21%)
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
P N+ ++YTSG++G PKGV + H ++ + + + V D L F +
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247
Query: 279 LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
D +EE F GA V L P LL +
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
+ D L+ Y + A L+ ++ GG L
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324
Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
++++ +V L YG TE T+ C+ V + + R + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTE----ATITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378
Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
P+ GE+ + G+ L GY+ P LT E + F TGD+ + +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438
Query: 508 VVKIIDRKKNLIKI 521
V++ I R + +KI
Sbjct: 3439 VIEYIGRVDHQVKI 3452
|
Length = 5163 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
RLR V++G L ++ + +++GYG+TE C P GT G +
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CAPVVSINVPMAAKPGTVGRILP 538
Query: 444 YSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID------- 492
+ RL VP E G G + ++G + +GY + P + +
Sbjct: 539 GMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEME 589
Query: 493 -GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
GW+ TGDI + G V+I R K KI+ GE V+LE +E
Sbjct: 590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630
|
Length = 718 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
GE+ + G + GY+ +P+LT E I + TGD+G+ P+G ++ + R + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 521 IS 522
I
Sbjct: 387 IR 388
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
Y+SGT+G PKGV+LTH+ + T V+ VD L+ DDV L LP+ HI
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238
Query: 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRV---FEKIHEGIKKAL 334
L+ V+ R GA++ ++ AL + + K T+ VP + K K L
Sbjct: 239 LNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL 297
Query: 335 EELR-------PLRRRIFDALY-KYKLAWMNMGYKQREASP-LADLLAFRK 376
+R PL + + DA K A + GY EA P LA LAF K
Sbjct: 298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK 348
|
Length = 537 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
++ E+ +V ++ +ALR G +PG RV Y N P+ V AM A ++ I C P
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144
Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
G AV LD +D K K+ E++ P L +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195
Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
L++ Q +S L + L PF+ I+Y+SGT+G
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250
Query: 235 PKGVVLTH 242
PK +V
Sbjct: 251 PKCIVHGA 258
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY++ Q+ AL A G EPG RVG N + +EA + +C + L P
Sbjct: 41 TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100
Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
+ +I++HAE D F+ + + L+P C + + M L A +
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157
Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
Q G Y W F +E Q ++C YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198
|
Length = 539 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
T+ + Y+ ++ SAL PG V + N P EA + A+ + CV +
Sbjct: 47 TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103
Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
L + F+L+H++ + V V + + ++L+ +S+ + +++ T + K
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
+ G +++FL G E PP + + YTSGT+ PKGVVL H
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222
Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
L M VYL LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247
|
Length = 567 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
LR VI AP +V+ + + + YG TE+ G T ++ + GT G +
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
+ELR V E G PL GE+ R G F+ Y+ P+ E G+ +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387
Query: 502 QILPNGVVKIIDRKKNLIKISQG 524
+ +G + + DRK++++ IS G
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGG 409
|
Length = 509 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
+P + I++TSG+ G PKGVVL+H + + DQ + + +DV L L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193
Query: 274 PLAH 277
PL H
Sbjct: 194 PLFH 197
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ EE+ + + + G G +V ++ NCP+++ + I VP+ L
Sbjct: 39 SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+IL +++ + + A LR +C T + +
Sbjct: 99 EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
S+ + P + I++TSGT+ PKGVV+TH + F
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202
Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
+ + DDVYL+ +P HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)
Query: 79 YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
Y+ + L A G +PG RV + +VEA AC L+ VPL P
Sbjct: 52 YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106
Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
+ F + I +++ +L+ SAQ T E
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150
Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
+ S F ++ + P P +I + Y+SG++ P+GV++TH + + +
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209
Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
D + V D +S+LP H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+Y+EV ++ LR G G RV IY P+ V AM AC + I ++
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134
Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
+ +D A+ F + V K LL +Q +V++ L Q
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190
Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
++ G + W E + + + P + I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
DL + RLR +S G PL+ EV E ++ + GYG TET
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236
Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
M+G V S R P GY GE+ + R
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288
Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
L GY +P+ T + G++ TGD +G + + R ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 72/344 (20%), Positives = 107/344 (31%), Gaps = 86/344 (25%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
I++TSG++G PKGVV TH TF + +D + + D L+ P +
Sbjct: 90 ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144
Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
VI A++ + + + P LL V R E+ L
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200
Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
LR L RR L Y EA P+A +
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246
Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
R V++ S E E C V G D + GP++ +
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288
Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
EL EV GE+ V G + YY P+ T+ + I W G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVY 536
D+G G + RK + ++ + G V
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVR 379
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ ++ LRA G G V I N P++ E A L P
Sbjct: 13 TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+N+ L AEI ++ V D K L+ S + + V +
Sbjct: 66 --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119
Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
+ S++E L + ++Y+SGT+G PKG+ L G+
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174
Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
L L F D VYLS PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
EF R C + GYG +E + G+ G V++Y+ L E
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336
Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
G D GE V G F GYY NP+ T E + G + +GD+
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLA 388
|
Length = 540 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
+ P N+ ++YTSG++G PKG H + V+ + + ++ ++ DV L F
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766
Query: 274 PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
A D + E F+ GA + H D L + + T L VP + +++
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824
Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
+ + + +E LRR + EA + A R RL
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861
Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
L YG TET + V P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
S L+ +P+ GE+ + G L GY P LT E + F
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955
Query: 496 -HTGDIGQILPNGVVKIIDRKKNLIKI 521
TGD+ + +GV++ + R + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982
|
Length = 3956 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPVSVYSELRL 449
GAP ++ F R C +V G+G TE G PD + V++
Sbjct: 277 GAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDTPPGALGPLPPGVAIVDPDTG 332
Query: 450 EEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
E P G D GE V G F GYY +P+ E + G + +GD+
Sbjct: 333 TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388
|
Length = 529 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP--DEMCMVGTAGPVS 442
LRLV GG+ F+ T Q YGL+ET G T +C P D + AG V
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345
Query: 443 -VYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 496
Y + + G P G + ++ GY+ NP+ T E +IDGW +
Sbjct: 346 RPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVN 405
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
TGD+ + +G I R +I I G +A
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436
|
Length = 540 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+++ + + LRA G PG RV + + P+ V A AC + V L L P
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71
Query: 138 GAVNFILDHAE 148
+ ILD +
Sbjct: 72 QDLEHILDDSG 82
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E ++ +LQ L A G G V + N ++E A + L + +P+ L
Sbjct: 29 SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
V +IL A + V ++ F ++ A + V
Sbjct: 89 DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
+ L G + P ++ +MYTSGT+ PKGV+ ++ +
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175
|
Length = 497 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
+P + TI+++SG+ G+PKGV+L+H I + + + + DDV LS LP
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832
Query: 276 AH 277
H
Sbjct: 833 FH 834
|
Length = 1146 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
W + L + E P ++ +++TSGTSGDPK V TH +A +GV L +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188
Query: 260 EDKMTVDDV-YLSFLPLAH 277
+ DDV Y+S +PL H
Sbjct: 189 G--LGPDDVCYVS-MPLFH 204
|
Length = 529 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
++ E+ +V + +ALRA G PG RV Y N P+ V AM A +L I C P +
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173
Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
G V LD +I D K KV EL + P S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225
Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
+ A W++FL + E+E P PF+ + I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278
Query: 236 KGVVLTH 242
K +V H
Sbjct: 279 KCIVHGH 285
|
Length = 655 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E+ + L A G G V + N +V A+ A + + L
Sbjct: 76 TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ + + V D + +LLS RLR
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185
Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
+ + L + LP P+P I ++ TSGT+G PKG +
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231
Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
PLA +L RV FR G + G+ H L
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269
Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
M L T+ V RR FD + K+K +
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299
Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
P + DL +V A+ L+++ G+ LS E+ E F V
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352
Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
YG TE T+ P+++ GT G +++ LD+
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397
Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
P G + V F GY D + IIDG +GD+G +G++ + R ++I
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453
Query: 521 ISQGEYVALEYLENVY 536
+S G ENV+
Sbjct: 454 VSGG--------ENVF 461
|
Length = 549 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
+ QP + I++TSG+ G PKGVV +H+++ V + D T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413
Query: 274 PLAH 277
PL H
Sbjct: 414 PLFH 417
|
Length = 718 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+E+ E ++ R+ G + G V I+ N +++E A L + L P
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85
Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
+I+D A V L C R R+++ G
Sbjct: 86 AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
Y+ + LP P + T M Y+SGT+G PKG+ L + T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ D VYLS PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ E Q+ + LRA G PG RVG+ V A+ A VPL +
Sbjct: 14 SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73
Query: 138 GAVNFILDHAE 148
+ ++L+ AE
Sbjct: 74 ERLQYMLEDAE 84
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
V T++++ + Q+ + G G V + G N P+ + A A +PL
Sbjct: 25 NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
L + +L +DF V L + F++LT+
Sbjct: 84 NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
LHL V + QP + T+ TSG++G PK V T + A S
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164
Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
GV L L F T D +L LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
L+L+ GGA LS + R+ C L Q +G+ E V + DE
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
P+S E+ V + +PL G + RG F GYYK+P + +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411
Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
+GD+ I P+G + ++ R+K+ I GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449
|
Length = 536 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY++++ EV SALRA G G RV IY + V AM AC + I ++
Sbjct: 85 TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144
Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
++ +D A + D KV K LL AQ V +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193
Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
V G+ P Y+ H +E L + I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
LR VIS GAP+ V E R A L YG TE P + E+
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344
Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
C VG + P+ + + LRL E+ GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390
Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
V G + YY P+ TR + I DG W GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428
|
Length = 552 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ V + + L A G P RV + N V A+ A + L + P
Sbjct: 30 TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+N L AEI + + + +++ D + + + A V G P
Sbjct: 81 ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
S + E P +P + YTSGT+G PKG V+ + V LF+
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185
Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
Q + +V L +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
+++ E+ + + L A G PG V + N + EA A L VP
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
VN+ EI ++ +D + L++ D + T L+ E+A
Sbjct: 66 ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121
Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
I P W+ +L + + +P QP ++ +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
LR + S GA S EV + L + LV G +ET G + T
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192
Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
GP +V + EVP G + G+ GYYK+P+ T ++ IDG
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245
Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+ GD ++ +G + ++ R I + GE V E +E P + D
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVAD 296
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 21/190 (11%)
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
A PL D A L + SGGA S V E L + L G +ET
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337
Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
G TV T GP V E P G + RG + G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389
Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
YYK+P+ T E+ IDG + GD ++ +G + ++ R I + GE V E +E
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448
Query: 535 VYCVAPIIED 544
P + D
Sbjct: 449 ALKAHPDVAD 458
|
Length = 533 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
T+ E+ +V + +ALRA G PG RV Y N PQ V AM A ++ I C P +
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173
Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
+LD E +F D ++ ++ + LR +V L
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229
Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
+ E G ++F + E+ PF + I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 110/522 (21%), Positives = 173/522 (33%), Gaps = 134/522 (25%)
Query: 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
P P + L +P LN A ++ V GNR + W T
Sbjct: 14 PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62
Query: 79 YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
Y+++ + +I L G PG RV + AN P V A I V L
Sbjct: 63 YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRA 122
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+ I+D A I +C LTA
Sbjct: 123 KELTTIVDKARITHA------------------------LCDKRLTAAD----------- 147
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++ I +TSGT+G PKG + H I ++ D F
Sbjct: 148 -----------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICDAF-P 180
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMELKPTL 315
+ + T DDV++ PLA + F G V + G L
Sbjct: 181 RHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL----------- 220
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
LE+ P + A+ +++ + +P A
Sbjct: 221 ------------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYRAMLI 253
Query: 376 KVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434
KVKA LR +S G L +V +++ T ++ G G TE + +E
Sbjct: 254 KVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANEENAK 311
Query: 435 VGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
G G PV Y +++ + + G + VRG T Y + + +E + DG
Sbjct: 312 PGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDG 365
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
W TGDI + +G + R ++I +S G +A +E+
Sbjct: 366 WNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDA 406
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)
Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
LR ++G P+ +VE+ LR ++ YG+ E CG V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334
Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
D + + A P + L + V E G L G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393
Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
+++ GY LT + I DGW TGD+G + G V + R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440
|
Length = 545 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ E+V+ + + LR G +PG V + P+ V L+L L+ +
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
GA LD PD RL++M + + A
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571
Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
+ ++ L + QP + I++TSG++G PKGV++ I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623
|
Length = 1296 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
++YTSG++G PKGV ++H + F+ + + D L+
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152
Query: 272 FLPL 275
LPL
Sbjct: 153 LLPL 156
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E+Y EV + + L++ G + G RV IY P+ AM AC
Sbjct: 80 TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
G V V+ F GY L RE DGW D+G G + I+ R+KN+I
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI 387
|
Length = 487 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY E+ E ++ + L A G G V +YG P A+ AC
Sbjct: 18 TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
T+ E+ EE + + L+ G G RV + P+ + C L + +P LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
P + + L+ A + ++ FTS T +M + T
Sbjct: 61 PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
T+ ++ + ++ +ALR G E G RVG+Y P+ A A L + VPL GP
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 138 GAVNFILDHAE 148
AV L +
Sbjct: 68 DAVEHRLRDSG 78
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
LR+ I AP EV+ + + + Y +E G T + D + G+ G +V
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322
Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
E+R+ E+P E+G Y +D P F Y+ +P+ T + GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
GD+G + +G + + DRK ++I IS G
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGG 399
|
Length = 502 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++ I +AL+A A G R + + P +V A C +I VP Y P
Sbjct: 42 SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97
Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
+ I+ AE + LL + +A ++C +L E
Sbjct: 98 ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156
Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
+W E P QP +I + YTSG++ PKGV ++H
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191
Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
V+ L F + DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220
|
Length = 4334 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+YTSGT+G PK +++H A V G L DDV LPL H
Sbjct: 83 PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)
Query: 93 LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
RA GA +PG RV I PQ ++ A+ A I VPL+D PG
Sbjct: 65 NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117
Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
V + HA +D D +L+ SA+ +R F + A+++ + P
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167
Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
V + P I + YTSG++ P GV +TH + T V V L+
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218
Query: 259 FEDKMTVDDVYLSFLPLAH 277
E V S+LP H
Sbjct: 219 QEGDRGV-----SWLPFFH 232
|
Length = 631 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+++ V + L SG PG RV + + ++V A+ A + L+ VPL D P
Sbjct: 45 SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
A + A V + D P R+ R ++ + +
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
HL E P + IM+T GT+G PK V TH IA+ V +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208
|
Length = 534 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
Y E+ ++ AL G P VG+ + V A+ A VPL D P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
AE ++D V+ LLS + L A + + + +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
+W E G E P N+ ++YTSG++G PKG H ++ +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684
|
Length = 5163 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
+R+ I+GG L+ E ++ + YG TET C E G A P+
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 494
R+ + + + + GE+ V G L GY+ P LT E + DG
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
+ TGD+ ++ +G+V+ + R + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596
|
Length = 4334 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E++ EV + +AL++ G + G RV IY P+ AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143
|
Length = 637 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
T E+ +V ++ +AL A G E G + I + P V A+ A+ L + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266
Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
P + L ++ +F QD V K + L A+ + +V L A+ K +
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322
Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
V+ SWD+FL L + +E + + QP T I+++SGT+G+PK + T T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380
|
Length = 728 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
V+ GG P V + + +V+ YG++ET G C D + + G
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201
Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
+R+E+ G + + G TL GY +NP GWF T D+G L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244
Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+GV+ ++ R + I + G V + +E P + D
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVAD 283
|
Length = 358 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ E+ ++ + L G +PG RV P+ V A+ A + I VPL+ GP
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61
Query: 138 GAVNFILDHAEIDFVF 153
A+ + L H+ V
Sbjct: 62 KAIEYRLGHSGAKVVV 77
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
+ R ++ GGAP L + LR+ YG+TET PD+
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279
Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
AG S L ++ + G + ++ ++L GYY P + +S G
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
F T D+G + G + I+ R I I+ GE V +E
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAA 365
|
Length = 452 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
TY+E++ EV + + L++ G + G RV IY P+ AM AC
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 30/173 (17%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+++ E+ ++ + ++ + +YG P + A +P+ DT P
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DTSIP 85
Query: 138 GA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
+ I++ A + V LS D Q + T E A +G
Sbjct: 86 SERIEMIIEAAGPELVIH-----TAELSIDAVGTQII---------TLSALEQAETSGG- 130
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
P S+D V + I+YTSG++G+PKGV ++H+ + +F
Sbjct: 131 PVSFDH-----AVKGDDNY--------YIIYTSGSTGNPKGVQISHDNLVSFT 170
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.97 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.97 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.89 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.88 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.8 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.64 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.05 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.73 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.22 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.8 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.77 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.74 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.36 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 86.2 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 85.81 |
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-74 Score=624.47 Aligned_cols=542 Identities=52% Similarity=0.941 Sum_probs=439.4
Q ss_pred CccccccccCCCCCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHH
Q 009090 2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE 81 (544)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~e 81 (544)
|.|-+++++++.+.++.|.++++||+.....+++..+....|+.++|+++++++|+++|+......++..+.++++||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e 84 (666)
T PLN02614 5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE 84 (666)
T ss_pred ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence 45778999999999999999999999987777765556678999999999999999999986411022334567799999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhH
Q 009090 82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161 (544)
Q Consensus 82 l~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 161 (544)
|.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....
T Consensus 85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 164 (666)
T PLN02614 85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE 164 (666)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred hhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeec
Q 009090 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241 (544)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s 241 (544)
+...........+.++.++..................+++++...............++++++|+|||||||.||||++|
T Consensus 165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt 244 (666)
T PLN02614 165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244 (666)
T ss_pred HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence 43322111122445555543221111001111223457777765432222222334678999999999999999999999
Q ss_pred cHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccH
Q 009090 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321 (544)
Q Consensus 242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~ 321 (544)
|+++...+......+......+..+|++++++|++|.++......++..|+++++.+.++..+++.+++++||+++++|.
T Consensus 245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~ 324 (666)
T PLN02614 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR 324 (666)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence 99999877655433211112467899999999999999987666678899999998779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHH
Q 009090 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 401 (544)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~ 401 (544)
+++.+.+.+.......+.++++++.++++.++..+..+.......+..+.+.+++.++.+++++|.+++||+++++.+.
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~- 403 (666)
T PLN02614 325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE- 403 (666)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-
Confidence 9999988777766666777788888888887777766544444567778888988888888999999999999998764
Q ss_pred HHHHhc-CCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 009090 402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480 (544)
Q Consensus 402 ~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~ 480 (544)
.|.+.+ ++.+++.||+||+++.++...+......+++|+|+|+++++|+++++++..+++.|+.|||+|+||+++.|||
T Consensus 404 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~ 483 (666)
T PLN02614 404 SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY 483 (666)
T ss_pred HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence 455555 5899999999999876655544433345899999999999999855555566778899999999999999999
Q ss_pred CChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 481 ~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++|+.+.+.|.+|||+|||+|++|+||+|+++||.+|+|++++|++|+|.+||++|.+||+|.|
T Consensus 484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~ 547 (666)
T PLN02614 484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDS 547 (666)
T ss_pred CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeE
Confidence 9999999999999999999999999999999999999999768999999999999999999975
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-75 Score=585.14 Aligned_cols=532 Identities=45% Similarity=0.745 Sum_probs=473.6
Q ss_pred ccccCCCCCCC-CCCcC---cceecccc--CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHH
Q 009090 7 QVEEGKEGKDG-KPSVG---PVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK 80 (544)
Q Consensus 7 ~~~~~~~~~~~-~~~~~---~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~ 80 (544)
+....+++-+. +|..+ +++|+... ..+++..+....|+++.|.+.+..+|+.+++.....++ ..++|+++||.
T Consensus 34 ~~~~~~~~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~ 112 (691)
T KOG1256|consen 34 RPKSLKPGVDLSNQSVGVEDGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYK 112 (691)
T ss_pred eccccCCCCCccccccccCCCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHH
Confidence 33444444332 44444 79999988 56677788999999999999999999999999884434 67889999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEc-cchh
Q 009090 81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKV 159 (544)
Q Consensus 81 el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~-~~~~ 159 (544)
|+.+++.+++..|++.|+++++.|+|+.-|++||++..+||...|.+++|+...++++++.++++.+.+.++|++ ++..
T Consensus 113 q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~ 192 (691)
T KOG1256|consen 113 QVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKA 192 (691)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 5566
Q ss_pred hHhhccccc-ccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccccccc-CCCCCCCeEEEEecCCCCCCCce
Q 009090 160 KELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKG 237 (544)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~pK~ 237 (544)
..+.+.... ..+.++.++.++....+............++|+++...++...... .++.+++.|.|+|||||||.|||
T Consensus 193 ~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKG 272 (691)
T KOG1256|consen 193 EKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKG 272 (691)
T ss_pred HHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCce
Confidence 667666654 3678999999999988888888888889999999999987665555 58899999999999999999999
Q ss_pred eeeccHhHHHHHhhhhhhhhcccC-CCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l 316 (544)
|++||+|++..+............ ....+|++++.+|+.|++....-...+..|+.+.+..+|+..+.+.+++.+||.+
T Consensus 273 VMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f 352 (691)
T KOG1256|consen 273 VMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVF 352 (691)
T ss_pred EEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEE
Confidence 999999999976543333222111 2234799999999999999998888889999999999999999999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCC
Q 009090 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395 (544)
Q Consensus 317 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l 395 (544)
.++|.+|+++.+.+.+.......+++.++++++..+. -.+..|.... ...+++++.|++.++.+|+++|.+++|++|+
T Consensus 353 ~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPl 431 (691)
T KOG1256|consen 353 PGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPL 431 (691)
T ss_pred eccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCC
Confidence 9999999999999999999999999999999999999 5577776664 7899999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCc
Q 009090 396 STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475 (544)
Q Consensus 396 ~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v 475 (544)
++++...++..+|+.|+++||+||+++.++...+++. ..+++|.|+|+.++|++|+++.++...+ ..|||||+|+++
T Consensus 432 s~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~V 508 (691)
T KOG1256|consen 432 SPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNV 508 (691)
T ss_pred CHHHHHHHHHhcCceeeecccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchh
Confidence 9999999999999999999999999988777777666 5599999999999999999888887765 379999999999
Q ss_pred cccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCcc
Q 009090 476 FSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (544)
Q Consensus 476 ~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~ 543 (544)
+.|||++|+.|.+++ .|||++|||+|+++++|.|++.||.+++|++++|++|.|..||++..+.+-|.
T Consensus 509 f~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~ 577 (691)
T KOG1256|consen 509 FMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQ 577 (691)
T ss_pred ceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceE
Confidence 999999999999999 99999999999999999999999999999999999999999999999887764
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-73 Score=611.59 Aligned_cols=539 Identities=50% Similarity=0.903 Sum_probs=440.4
Q ss_pred cccccccCCCCCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHH
Q 009090 4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVY 83 (544)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~ 83 (544)
.|--++|-+-+.+++|.++++||+....+.+...+....|+.++|+++++++|+++|+......++..++++++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~ 84 (660)
T PLN02861 5 YTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVY 84 (660)
T ss_pred ceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHH
Confidence 45567888888889999999999998888776667788899999999999999999997531113445667899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhh
Q 009090 84 EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (544)
Q Consensus 84 ~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (544)
++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+.
T Consensus 85 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 85 DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877655443
Q ss_pred cccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccH
Q 009090 164 SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243 (544)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~ 243 (544)
..........+.++.+++.................+|+++...... ........++++++|+|||||||.||||++||+
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~ 243 (660)
T PLN02861 165 SCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNR 243 (660)
T ss_pred HhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecH
Confidence 3222111235556665543211111111112334577777654321 112233468999999999999999999999999
Q ss_pred hHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHH
Q 009090 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF 323 (544)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~ 323 (544)
+++..+......+......+..+|++++.+|++|.++....+.+++.|+++++.+.++..+++.+++++||+++++|.++
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~ 323 (660)
T PLN02861 244 AIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVY 323 (660)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHH
Confidence 99988766544331111124688999999999999998776668999999999877999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHH
Q 009090 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 403 (544)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~ 403 (544)
+.+.+.........+.+++.++.++.+.+...+..+.......+..+.+++++.++.+++++|.+++||+++++++.+ |
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~ 402 (660)
T PLN02861 324 DRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-F 402 (660)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-H
Confidence 999988888777778889999999999888877765444444567788889999999999999999999999999865 5
Q ss_pred HHhcC-CceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCC
Q 009090 404 RVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482 (544)
Q Consensus 404 ~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~ 482 (544)
.+.++ ..+++.||+||+++.++..........+++|+|+|+++++|++.++.+....+.++.|||+++||+++.||+++
T Consensus 403 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~ 482 (660)
T PLN02861 403 LRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKR 482 (660)
T ss_pred HHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCC
Confidence 55555 47999999999987766554433334589999999999999985454434444556899999999999999999
Q ss_pred hhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 483 ~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+.+.+.|.+|||+|||+|++|+||+|++.||.||+|++++|++|+|.+||++|.+||.|.|
T Consensus 483 pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~ 544 (660)
T PLN02861 483 QDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAS 544 (660)
T ss_pred HHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeE
Confidence 99999999999999999999999999999999999999778999999999999999999975
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-73 Score=609.47 Aligned_cols=544 Identities=80% Similarity=1.340 Sum_probs=453.3
Q ss_pred CCccccccccCCCCCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHH
Q 009090 1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK 80 (544)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~ 80 (544)
||-+..++.+..++.+++|.++++||+....+.++..++..+|+.++|++.++++|+++|+.+....++..+.++++||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~ 80 (660)
T PLN02430 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK 80 (660)
T ss_pred CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence 78888888877788779999999999998777776666789999999999999999999997642113444566788999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh
Q 009090 81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160 (544)
Q Consensus 81 el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 160 (544)
|+.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++++++.++|+.++++++|+++....
T Consensus 81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~ 160 (660)
T PLN02430 81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred HhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeee
Q 009090 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240 (544)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 240 (544)
..........+.++.++.+++.................+|+++...+...+.......++++++++|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l 240 (660)
T PLN02430 161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240 (660)
T ss_pred HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence 33222212223455666665433221111111233456788887655433322334468899999999999999999999
Q ss_pred ccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEecc
Q 009090 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (544)
Q Consensus 241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p 320 (544)
||+++...+..+...+......+.++|++++++|++|.++......++..|+++++...++..+.+.+++++||++.++|
T Consensus 241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP 320 (660)
T PLN02430 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence 99999988766533221111246789999999999999998876677899999998877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHH
Q 009090 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400 (544)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~ 400 (544)
.+++.+.+.........++++++++.++.+.+..++..+.......+.++.+.+++.+..+++++|.+++||+++++++.
T Consensus 321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~ 400 (660)
T PLN02430 321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE 400 (660)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence 99999999888888888889999999999999999887765444567778888999999999999999999999999997
Q ss_pred HHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCcccccc
Q 009090 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480 (544)
Q Consensus 401 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~ 480 (544)
++++...++.+++.||+||+++.++...+......+++|.|.++++++++++++.+..+.+.+..|||+|+||+++.||+
T Consensus 401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~ 480 (660)
T PLN02430 401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480 (660)
T ss_pred HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence 77766545789999999999987776655444445899999999999999866666566666678999999999999999
Q ss_pred CChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 481 ~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.+.+.|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+
T Consensus 481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~ 544 (660)
T PLN02430 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVED 544 (660)
T ss_pred CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeE
Confidence 9999999999999999999999999999999999999999878999999999999999999975
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=585.27 Aligned_cols=521 Identities=40% Similarity=0.667 Sum_probs=427.7
Q ss_pred CCCCCCCcCcceeccccCCCCCC---CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHH
Q 009090 14 GKDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la 90 (544)
.+..+.+++.+||+...+.++-. .++...++.++|+.+++++|+++|+..+...++..+.++.+||+||.++++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA 92 (651)
T PLN02736 13 PEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIG 92 (651)
T ss_pred CCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHH
Confidence 36778899999999876644422 345678999999999999999999964310033445678899999999999999
Q ss_pred HHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccccc
Q 009090 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 170 (544)
Q Consensus 91 ~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 170 (544)
++|++.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..
T Consensus 93 ~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~ 171 (651)
T PLN02736 93 SGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EI 171 (651)
T ss_pred HHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999877665544322 23
Q ss_pred ccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHh
Q 009090 171 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250 (544)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~ 250 (544)
+..+.++..+..................+|+++...............++++++|+|||||||.||||++||+++...+.
T Consensus 172 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~ 251 (651)
T PLN02736 172 PSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVA 251 (651)
T ss_pred CCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHH
Confidence 44555655543221111111112234567888776543222223345789999999999999999999999999999888
Q ss_pred hhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHH
Q 009090 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGI 330 (544)
Q Consensus 251 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~ 330 (544)
.+...+ .+.++|++++.+|++|.+++...+.++..|+++++.+.++..+++.++++++|+++++|.+++.+.+..
T Consensus 252 ~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~ 326 (651)
T PLN02736 252 GSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGI 326 (651)
T ss_pred HHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHH
Confidence 776555 678899999999999999998777889999999998888999999999999999999999999999988
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCc
Q 009090 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410 (544)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~ 410 (544)
.......+.++++++++++......+..+.. ..+.++++.+++.+..+++++|.+++||+++++++.+++++.+|+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~ 403 (651)
T PLN02736 327 TNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGR 403 (651)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 8888888888999998888877666655421 2345677778888888888999999999999999999999988999
Q ss_pred eEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCC-CCCCCCCCCeEEEecCCccccccCChhhhhhc
Q 009090 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY-SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489 (544)
Q Consensus 411 i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~-~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~ 489 (544)
+++.||+||+++.++...... ...+++|+|.|+++++|++.++... .....++.|||+++||+++.||+++++.+.+.
T Consensus 404 ~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~ 482 (651)
T PLN02736 404 VLEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV 482 (651)
T ss_pred eEEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhh
Confidence 999999999987766554433 3448999999999999998332211 11122347999999999999999999999999
Q ss_pred c-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 490 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 490 ~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
| .+|||+|||+|++|+||+++++||.+|+|++++|++|+|.+||++|.+||+|.|
T Consensus 483 ~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~ 538 (651)
T PLN02736 483 IDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQ 538 (651)
T ss_pred hccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeE
Confidence 8 689999999999999999999999999999768999999999999999999975
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=580.43 Aligned_cols=512 Identities=27% Similarity=0.409 Sum_probs=412.3
Q ss_pred CCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHH
Q 009090 14 GKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93 (544)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L 93 (544)
.++...++|++||..+..+. .......|+.++|.++++++|+++|++.. ..+..++++||+|+.+++.++|++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~----~~g~~~~~~Ty~el~~~v~~~A~~L 108 (746)
T PTZ00342 35 EKATNENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH----SCGEPQNYITYGNFFKKVLSFSHSL 108 (746)
T ss_pred cCCCCCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc----CCCCCceeeeHHHHHHHHHHHHHHH
Confidence 34566778889998887666 33456889999999999999999999753 1122368999999999999999999
Q ss_pred HHc---CCCCC-----------CEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh
Q 009090 94 RAS---GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159 (544)
Q Consensus 94 ~~~---gl~~g-----------d~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 159 (544)
.+. |+++| |+|+++++|+++|+++.+||+++|++++|+++.++.+++.++|+++++++++++.+..
T Consensus 109 ~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~ 188 (746)
T PTZ00342 109 NTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV 188 (746)
T ss_pred HHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH
Confidence 974 99998 9999999999999999999999999999999999999999999999999999987777
Q ss_pred hHhhcccccccccccEEEEecCCchH------------------HH----------------------------------
Q 009090 160 KELLSPDCRSAQRLRVMVCFTSLTAE------------------QK---------------------------------- 187 (544)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~---------------------------------- 187 (544)
+.+..... ..+.++.++.++..... ..
T Consensus 189 ~~l~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (746)
T PTZ00342 189 EGLLERKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEK 267 (746)
T ss_pred HHHHHhhc-cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 66544332 23456677766542110 00
Q ss_pred --HH---HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCC
Q 009090 188 --EM---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262 (544)
Q Consensus 188 --~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~ 262 (544)
.. ..........|+++.... ..........++++++|+|||||||.||||++||+|+++.+....... ...
T Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~ 343 (746)
T PTZ00342 268 IKDLKEKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFK 343 (746)
T ss_pred hHHHHHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---ccc
Confidence 00 000112233445544322 112223345689999999999999999999999999998876543221 001
Q ss_pred CCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 263 MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 263 ~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
....+++++.+|++|++++...+.+++.|+++++.++++..+.+.+++++||+++++|.++++|.+.+.......+.+++
T Consensus 344 ~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~ 423 (746)
T PTZ00342 344 KYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKR 423 (746)
T ss_pred CCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHH
Confidence 23568999999999999998777889999999998779999999999999999999999999999888777777788888
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHH--hHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccc
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~ 420 (544)
.++.++.+.+..... +. ....++.+ .+++.++.++++||.+++||+++++++.++|+..+|++++++||+||+
T Consensus 424 ~~~~~a~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt 498 (746)
T PTZ00342 424 FLVKKILSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTET 498 (746)
T ss_pred HHHHHHHHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcc
Confidence 888888877766432 11 12333333 478888889999999999999999999999999889999999999999
Q ss_pred cCceeeccCCCccccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccC
Q 009090 421 CGPTTVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (544)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TG 498 (544)
++.++...+.. ...+++|+|+ |++++++++.++.. ..+.++.|||+++||.++.|||++|+.|++.| .||||+||
T Consensus 499 ~~~~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~--~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TG 575 (746)
T PTZ00342 499 TGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYK--ATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTG 575 (746)
T ss_pred cceeeeccCCC-CCcccccCcCCCcEEEEEecccccc--cCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCC
Confidence 87776655443 3458999998 99999999843222 22233579999999999999999999999999 69999999
Q ss_pred ceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 499 Dlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+
T Consensus 576 Dig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~ 621 (746)
T PTZ00342 576 DIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINF 621 (746)
T ss_pred cEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccE
Confidence 9999999999999999999999878999999999999999999975
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-69 Score=549.89 Aligned_cols=480 Identities=36% Similarity=0.590 Sum_probs=396.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.+++.+.++.+|+.+++... ..+.++.+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45688999999999999998888765 3788899999999999999999999999977999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+.+|++.||+++..+++++.++|++++++++|++..............++.........+........ ........
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 166 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEA-KALVLEVF 166 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccch-hhcccccc
Confidence 99999999999999999999999999999999999998665544333322211111111111100000000 00000010
Q ss_pred eHHHHH---hcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCC-CCCCcEEEEecC
Q 009090 199 SWDEFL---HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLP 274 (544)
Q Consensus 199 ~~~~l~---~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~p 274 (544)
...... ...........+..++|+|.|+|||||||.||||++||+|+++.+..+.+.+ . .+++|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfLP 241 (613)
T COG1022 167 PDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFLP 241 (613)
T ss_pred ccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeCc
Confidence 010000 1111112223567899999999999999999999999999999999988876 5 889999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 275 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
+.|++...........++..++...++..+.+.+++++||.++++|.+|+.+.+.+.++....+..++.++.++.+....
T Consensus 242 laHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~ 321 (613)
T COG1022 242 LAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321 (613)
T ss_pred HHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 99999988754444455555556669999999999999999999999999999999999999999999899998877643
Q ss_pred HHh---cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC
Q 009090 355 WMN---MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (544)
Q Consensus 355 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 431 (544)
..+ -+..........+++.|++.++..|.++|++++||+++++++..+|+.. |+++.++||+||+++.++.+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~ 400 (613)
T COG1022 322 KISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDR 400 (613)
T ss_pred HHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccC
Confidence 332 1111222233378899999999999999999999999999999999987 899999999999999999998877
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~ 510 (544)
... +++|.|+|++++||+| .|||+||||+++.|||++|+.|.++| .||||+|||+|.+|++|+|+
T Consensus 401 ~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~ 466 (613)
T COG1022 401 FVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLV 466 (613)
T ss_pred ccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEE
Confidence 666 8999999999999999 59999999999999999999999999 69999999999999999999
Q ss_pred EEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 511 ~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+.||.+|+|+.++|++|.|+.||+.+.++|.|.+
T Consensus 467 i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~q 500 (613)
T COG1022 467 ITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQ 500 (613)
T ss_pred EeecccceEECCCCcccChHHHHHHHhcCCCeeE
Confidence 9999999999999999999999999999999864
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=569.80 Aligned_cols=522 Identities=34% Similarity=0.583 Sum_probs=416.5
Q ss_pred CCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeeccc--------CC------CCCCceEeeHHHH
Q 009090 17 GKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEV 82 (544)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~--------~~------~~~~~~~~Ty~el 82 (544)
+.+.++.+|||+..+.......+...|+.++|+++++++||++|+...... ++ ..++++++||+|+
T Consensus 33 ~~~~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el 112 (696)
T PLN02387 33 VGGEPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQV 112 (696)
T ss_pred CCCCCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHH
Confidence 444455579999966333333467789999999999999999999543110 11 1256788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHh
Q 009090 83 YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162 (544)
Q Consensus 83 ~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 162 (544)
.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++++++.++|+.++++++|++.+....+
T Consensus 113 ~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l 192 (696)
T PLN02387 113 FERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKL 192 (696)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777665
Q ss_pred hcccccccccccEEEEecCCchHHHHH-HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeec
Q 009090 163 LSPDCRSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241 (544)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s 241 (544)
..... .....+.++.+++........ .........+|+++...+...........++++++|+|||||||.||||++|
T Consensus 193 ~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lt 271 (696)
T PLN02387 193 IDISS-QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMT 271 (696)
T ss_pred HHHhh-ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEE
Confidence 44332 234566777776543211110 0112334567888776543333233345789999999999999999999999
Q ss_pred cHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----C-----hhhHHHHhhhhC
Q 009090 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELK 312 (544)
Q Consensus 242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~ 312 (544)
|++++..+..+...+ ..+.++|++++++|++|.+++.....++..|+++.+... + +..+...+++++
T Consensus 272 h~~l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~ 347 (696)
T PLN02387 272 HGNIVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALK 347 (696)
T ss_pred cHHHHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhC
Confidence 999998887654432 146789999999999999998877777778888766432 1 234566889999
Q ss_pred CcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccC--cCCcchHHHHHhHHHHHHHhCCcccEEEE
Q 009090 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK--QREASPLADLLAFRKVKARLGGRLRLVIS 390 (544)
Q Consensus 313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~ 390 (544)
||++.++|.++..+.+.........+.+.+.++..+...++..+..... ....+.+++.+.+++.+..+++++|.+++
T Consensus 348 pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~ 427 (696)
T PLN02387 348 PTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLS 427 (696)
T ss_pred CcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEE
Confidence 9999999999999998887777777778888888887766665532110 12345678888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCC-CCCCCCeEE
Q 009090 391 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVC 469 (544)
Q Consensus 391 ~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~Gei~ 469 (544)
||+++++++.++++..+|+++++.||+||+++.++....... ..+++|+|+|+++++|+|.++++.... .+++.|||+
T Consensus 428 GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~ 506 (696)
T PLN02387 428 GGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIV 506 (696)
T ss_pred cCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEE
Confidence 999999999988888889999999999999887766554433 348999999999999998555443322 233579999
Q ss_pred EecCCccccccCChhhhhhccc---CC--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 470 VRGKTLFSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 470 v~~~~v~~gy~~~~~~~~~~~~---~g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+||+++.|||++|+.+.+.|. +| ||+|||+|++|+||++++.||.+|+|++++|++|+|.+||++|.+||.|.+
T Consensus 507 vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~ 586 (696)
T PLN02387 507 IGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDN 586 (696)
T ss_pred eccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeE
Confidence 9999999999999999999882 35 999999999999999999999999999877999999999999999999974
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=507.48 Aligned_cols=523 Identities=36% Similarity=0.655 Sum_probs=459.6
Q ss_pred CCCCCCCCCCcCcceeccccCCCCCCCC-CCcccHHHHHHHHHHcCCCCCceEeeccc--------CC------CCCCce
Q 009090 11 GKEGKDGKPSVGPVYRNLLASNGFPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYV 75 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~p~~~a~~~~~~~--------~~------~~~~~~ 75 (544)
++..+.+++.++++|||....+++-..+ +...|+.++|++.++++.++.++-.++.. |+ .-|++.
T Consensus 9 V~~~~~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~ 88 (678)
T KOG1180|consen 9 VKAKPAANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYK 88 (678)
T ss_pred cccCCCCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEecccee
Confidence 3445566889999999999877666655 78899999999999999999998766432 22 135678
Q ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 76 WKTYKEVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 76 ~~Ty~el~~~~~~la~~L~~~gl~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
++||.|+..++.++|++|.+.|++++++ ++++++.+.+|+.+++||++.+..+|.+...+..+.+.|-|++++++.+|+
T Consensus 89 w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T 168 (678)
T KOG1180|consen 89 WMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFT 168 (678)
T ss_pred eecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEe
Confidence 9999999999999999999999997766 999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhcccccccccccEEEEecCCch----HHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCC
Q 009090 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTA----EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 230 (544)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSG 230 (544)
+.+.+..+....+ ....++.+|.++..+. .........++..++++++.+.++....++.++.++|+|+||||||
T Consensus 169 ~~~LL~kl~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSG 247 (678)
T KOG1180|consen 169 DSELLPKLKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSG 247 (678)
T ss_pred CHHHHHHHHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCC
Confidence 9999987755543 4478888888885322 2222223357899999999999987766677779999999999999
Q ss_pred CCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC------C---h
Q 009090 231 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG------D---L 301 (544)
Q Consensus 231 tTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~------~---~ 301 (544)
|||.||||+++|+|+++.+....... ..+++.|+++..+|+.|++.+.+-+.+++.|+.+-..+. + -
T Consensus 248 STG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~ 323 (678)
T KOG1180|consen 248 STGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIK 323 (678)
T ss_pred CCCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhc
Confidence 99999999999999999998876654 257899999999999999999999999999999987653 1 1
Q ss_pred hhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh-cccCcCCcchHHHHHhHHHHHHH
Q 009090 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-MGYKQREASPLADLLAFRKVKAR 380 (544)
Q Consensus 302 ~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 380 (544)
..---.+..++||++.++|.+|+++.+...+.....+.+.+++|..+...++..++ .+ ...++++.+.|++.+..
T Consensus 324 kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g----~~s~~ld~lVFkKIr~~ 399 (678)
T KOG1180|consen 324 KGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNG----PGSPLLDALVFKKIRAL 399 (678)
T ss_pred cCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccC----CchhhHHHHHHHHHHHH
Confidence 12222345899999999999999999999999999999999999999988888887 43 35789999999999999
Q ss_pred hCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCC
Q 009090 381 LGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460 (544)
Q Consensus 381 ~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~ 460 (544)
.|.+||++++||++++++..+.+.-.+++++.++||.||+++..+...+.+... +.+|.|++.++++++|.+++++...
T Consensus 400 lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~ 478 (678)
T KOG1180|consen 400 LGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAK 478 (678)
T ss_pred hCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCC
Confidence 999999999999999999999999998999999999999999988887777665 7999999999999999999998877
Q ss_pred CCCCCCeEEEecCCccccccCChhhhhhcc--cCC--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHh
Q 009090 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536 (544)
Q Consensus 461 ~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l 536 (544)
.....||||++|+++..||++|++.|++.| .+| ||+|||+|++.+||.|.+.+|.+|++|+.+|+.|++.-+|+++
T Consensus 479 ~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l 558 (678)
T KOG1180|consen 479 NKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAAL 558 (678)
T ss_pred CCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHH
Confidence 665789999999999999999999999999 489 9999999999999999999999999999999999999999999
Q ss_pred hcCCCcc
Q 009090 537 CVAPIIE 543 (544)
Q Consensus 537 ~~~~~V~ 543 (544)
+..|.|+
T Consensus 559 ~s~p~V~ 565 (678)
T KOG1180|consen 559 RSSPYVD 565 (678)
T ss_pred hcCcchh
Confidence 9999986
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=556.92 Aligned_cols=515 Identities=31% Similarity=0.530 Sum_probs=407.8
Q ss_pred CCCCcCcceeccccCC----CCCCCCCCcccHHHHHHHHHHcCCCCCceEeecc----------cCCC--------CCCc
Q 009090 17 GKPSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPY 74 (544)
Q Consensus 17 ~~~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~----------~~~~--------~~~~ 74 (544)
..++++++||+..... .+....+...|+.++|.++++++|+++|+.+... .++. .+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (700)
T PTZ00216 40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET 119 (700)
T ss_pred CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence 3456788999876443 2322234567999999999999999999987511 0111 1246
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++++++.++|+.++++++|+
T Consensus 120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~ 199 (700)
T PTZ00216 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC 199 (700)
T ss_pred eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc--cccc-ccCCCCCCCeEEEEecCCC
Q 009090 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEM-EILPPQPFNICTIMYTSGT 231 (544)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~i~~TSGt 231 (544)
+.+....+.............++.+++.... .........+|+++...+. .... ......++++++++|||||
T Consensus 200 ~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT 275 (700)
T PTZ00216 200 NGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT 275 (700)
T ss_pred CHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence 8776554433221111111244444432211 0112335668888876542 1111 1233468899999999999
Q ss_pred CCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHH-----
Q 009090 232 SGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD----- 306 (544)
Q Consensus 232 TG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~----- 306 (544)
||.||||++||+++++.+..+...+........++|++++++|++|.++......++..|+++++. ++..+.+
T Consensus 276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~ 353 (700)
T PTZ00216 276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARP 353 (700)
T ss_pred CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccc
Confidence 999999999999999887765543311111246789999999999999987666667888877663 4555544
Q ss_pred --HhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCc
Q 009090 307 --DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384 (544)
Q Consensus 307 --~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (544)
.+++++||++.++|.+++.+.+.........+.+++.++..+...+...+..+. ..+.++.+.|+..+..++++
T Consensus 354 ~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~ 429 (700)
T PTZ00216 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGR 429 (700)
T ss_pred cchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCc
Confidence 678999999999999999999988877777788888999988888877666542 34567888899888889999
Q ss_pred ccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCC
Q 009090 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 464 (544)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~ 464 (544)
+|.+++||+++++++.++++..++ ++++.||+||+++.++....... ..+++|+|+++++++|+| +++.......++
T Consensus 430 lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~ 506 (700)
T PTZ00216 430 VRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEP 506 (700)
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCC
Confidence 999999999999999998888778 99999999999877665544433 348999999999999999 433222334456
Q ss_pred CCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCcc
Q 009090 465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (544)
Q Consensus 465 ~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~ 543 (544)
.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||++++.||.||+|+..+|++|+|.+||++|.+||.|.
T Consensus 507 ~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~ 586 (700)
T PTZ00216 507 RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVV 586 (700)
T ss_pred CceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcc
Confidence 79999999999999999999999999 78999999999999999999999999999845899999999999999999996
Q ss_pred C
Q 009090 544 D 544 (544)
Q Consensus 544 ~ 544 (544)
+
T Consensus 587 ~ 587 (700)
T PTZ00216 587 P 587 (700)
T ss_pred c
Confidence 3
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=512.14 Aligned_cols=423 Identities=29% Similarity=0.436 Sum_probs=344.5
Q ss_pred cCCCC-CceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEecCchhHHHHHHHHHhcCCEEee
Q 009090 54 KYPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSLICVP 130 (544)
Q Consensus 54 ~~p~~-~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g--l~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~ 130 (544)
.++++ +.+++. +.. + +.+||.|+++++.++|..|.+.| +++||+|++++||++++..+++||+.+|++..+
T Consensus 28 ~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~ 101 (537)
T KOG1176|consen 28 VYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNP 101 (537)
T ss_pred ccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccc
Confidence 33334 666654 321 2 68999999999999999999875 899999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee-HHHHHhcccc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-WDEFLHLGKV 209 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 209 (544)
++|.+.+.++.+.++.++++++|++......+.+...... ..++.+....... .........+ +..+......
T Consensus 102 ~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T KOG1176|consen 102 LNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDLDAFEDLMPEGLP 175 (537)
T ss_pred cCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccccchhhccccCCC
Confidence 9999999999999999999999999998887755543322 3333333320000 0000011111 3333322211
Q ss_pred cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHH-H
Q 009090 210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288 (544)
Q Consensus 210 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~-l 288 (544)
.. ..+...+|++++.|||||||.||||.+||++++.......... .+...|+.++.+|++|.+|+...+.+ +
T Consensus 176 -~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~ 248 (537)
T KOG1176|consen 176 -DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLL 248 (537)
T ss_pred -cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHH
Confidence 11 4455779999999999999999999999999998876554443 56779999999999999999987774 5
Q ss_pred HcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcch
Q 009090 289 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367 (544)
Q Consensus 289 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (544)
..|+++++.+. ++..+++.+++|++|++.++|.++..+++. +
T Consensus 249 ~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-------------------------------------p 291 (537)
T KOG1176|consen 249 AGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-------------------------------------P 291 (537)
T ss_pred hCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC-------------------------------------C
Confidence 66666666666 999999999999999999999999998752 2
Q ss_pred HHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCCCccccCccCcCccCce
Q 009090 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446 (544)
Q Consensus 368 ~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~ 446 (544)
.....++ +++|.+.+||+++++++.+++++.++ ..+.+.||+||+++.++.+......+.+++|.++++++
T Consensus 292 ~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~ 363 (537)
T KOG1176|consen 292 IVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVR 363 (537)
T ss_pred ccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceE
Confidence 2333333 49999999999999999999999998 88999999999998888876665556799999999888
Q ss_pred EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC-CccccCceEEEccCCcEEEEeeccceeecCCCc
Q 009090 447 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525 (544)
Q Consensus 447 v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~ 525 (544)
+++.+ + ....++.++.||||++|+.++.||++||+.|++.|.+ |||+|||+|++|+||+|++.+|.+|+||+ +|+
T Consensus 364 ~~v~~-e--~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~ 439 (537)
T KOG1176|consen 364 VKVLD-E--TGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGE 439 (537)
T ss_pred EEeeC-C--CCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCE
Confidence 88877 3 3355667789999999999999999999999999955 99999999999999999999999999997 899
Q ss_pred eechHhHHHHhhcCCCccC
Q 009090 526 YVALEYLENVYCVAPIIED 544 (544)
Q Consensus 526 ~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+|.|||++|.+||.|.|
T Consensus 440 qv~P~EiE~vL~~hP~V~e 458 (537)
T KOG1176|consen 440 QVSPAEIEAVLLTHPDVLE 458 (537)
T ss_pred EeCHHHHHHHHHhCCCccE
Confidence 9999999999999999986
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=476.49 Aligned_cols=445 Identities=23% Similarity=0.320 Sum_probs=372.4
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 009090 30 ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (544)
Q Consensus 30 ~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~ 109 (544)
.-+|..-.|-.+.|++++++..+++-||+.|+++. ..+ .++||+|+.+.++++|.+|.+.|+++||+|++..|
T Consensus 38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~----~eg---~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp 110 (596)
T KOG1177|consen 38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD----HEG---IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP 110 (596)
T ss_pred ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe----ecc---chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence 44666667889999999999999999999999886 221 46999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhH-----hhc------------cccccccc
Q 009090 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLS------------PDCRSAQR 172 (544)
Q Consensus 110 n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~------------~~~~~~~~ 172 (544)
|+.+|+..+|||.++|.+.++++|.+...|++..|+..+++++|+....... +++ ...+.++.
T Consensus 111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~ 190 (596)
T KOG1177|consen 111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE 190 (596)
T ss_pred ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999997643211 111 11223445
Q ss_pred ccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccccc-----ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH
Q 009090 173 LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247 (544)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~ 247 (544)
+..++..++..+ -....-+.+++........ -.....+++++.|.|||||||.|||+.+||.++++
T Consensus 191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N 261 (596)
T KOG1177|consen 191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN 261 (596)
T ss_pred ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence 556665553221 1133445555544332111 11234789999999999999999999999999999
Q ss_pred HHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHH
Q 009090 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFE 324 (544)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (544)
+.......+ ++.+++++++..|++|.+|... ++.++..|++++++.+ ++...+++|.++++|.++++|+++.
T Consensus 262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~ 336 (596)
T KOG1177|consen 262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV 336 (596)
T ss_pred hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence 998888777 7888999999999999999765 8889999999999875 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHH
Q 009090 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404 (544)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~ 404 (544)
.|++... ....+++ ++|.++.||+++++++.+.+.
T Consensus 337 Dlln~~~-------------------------------------~~~~~~s--------~lr~~vigGa~~s~eLlk~iv 371 (596)
T KOG1177|consen 337 DLLNIPQ-------------------------------------KQQVDLS--------SLRKGVIGGAPVSPELLKLIV 371 (596)
T ss_pred HHhcchh-------------------------------------hccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence 8875322 2233333 899999999999999999999
Q ss_pred HhcCCc-eEEeeccccccCceeeccCCC--ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC
Q 009090 405 VTCCAF-LVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481 (544)
Q Consensus 405 ~~~~~~-i~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~ 481 (544)
+..++. +...||+||++.+.+....++ .....++|+.+++.|.++++ .++...+++ ..||||+||++.+.|||+
T Consensus 372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg 448 (596)
T KOG1177|consen 372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG 448 (596)
T ss_pred HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence 987754 778899999999888877665 33446899999999999999 666655554 569999999999999999
Q ss_pred Chhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 482 NPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 482 ~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++.+.+.. .|.||+|||+|.+|++|+++++||.+|+|+ ++|++|+|.|||+.|.+||.|.|
T Consensus 449 ~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~ 511 (596)
T KOG1177|consen 449 EEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKE 511 (596)
T ss_pred CcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeee
Confidence 998888877 789999999999999999999999999998 69999999999999999999975
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=523.27 Aligned_cols=434 Identities=29% Similarity=0.451 Sum_probs=358.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.+.+.++++++|+++|+++. +.. + ++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45789999999999999999999986 331 1 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee-
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP- 197 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (544)
|||+++|++++|++|.+...++.++++.+++++++++.+.......... .......+........ ..
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE-ALPVVLVVLLVGDADD-----------RLP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhc-cCCcceEEEecccccc-----------ccc
Confidence 9999999999999999999999999999999999999873332222111 1122222222221110 00
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCC--CCCCcEEEEecCh
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPL 275 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~p~ 275 (544)
.+++++...............++++++++|||||||.||||++||+|+..+...+...+ . ++.+|++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 23444432221122222226789999999999999999999999999999988887776 5 8899999999999
Q ss_pred HHHHHHHHHHHH-HHcCcEEEEec---CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 276 AHILDRVIEEYF-FRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 276 ~~~~g~~~~~~~-l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
+|.+|+...+.+ ++.|+++++.+ .++..++..+.++++|++.++|.++..++........
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~---------------- 287 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD---------------- 287 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc----------------
Confidence 999999976664 99999999987 3899999999999999999999999998764332211
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
++. +++|.+++||+++++++.+.|++.++ ..+++.||+||++..++.+...
T Consensus 288 ---------------------~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 339 (534)
T COG0318 288 ---------------------DLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339 (534)
T ss_pred ---------------------ccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence 111 03999999999999999999999997 4799999999999888887766
Q ss_pred C-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC-CccccCceEEEccCCc
Q 009090 431 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGV 508 (544)
Q Consensus 431 ~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~g~ 508 (544)
. ....+++|.|.|+++++|+| ++++ .+.+ |+.|||+++||+++.||+++|+.+.+.|.+ |||+|||+|++|+||+
T Consensus 340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~ 416 (534)
T COG0318 340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY 416 (534)
T ss_pred hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence 6 33457889999999999999 5544 3444 789999999999999999999999998875 9999999999999999
Q ss_pred EEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 509 l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++.||.+|+|+. +|++|+|.|||+++.+||+|.|
T Consensus 417 l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~ 451 (534)
T COG0318 417 LYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAE 451 (534)
T ss_pred EEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcce
Confidence 9999999999996 9999999999999999999875
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=491.73 Aligned_cols=427 Identities=22% Similarity=0.269 Sum_probs=349.1
Q ss_pred ccHHHHHHHHHHc-CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHH
Q 009090 42 NTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 42 ~tl~~~l~~~a~~-~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
|--..+++++.+. .+++.|+++. +..++. +.+||.||.+.++++|+.|++ .|+ +||||++++|+.+++++++|
T Consensus 9 N~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~L 83 (528)
T COG0365 9 NLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALL 83 (528)
T ss_pred echhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHH
Confidence 3334467777764 5788999987 433333 899999999999999999997 578 99999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccc--cccccEEEEecCCchHHHHHHhhCCcee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS--AQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
||+++|++.+|+.+.++++++..++++++++++|+.+............. ......++......
T Consensus 84 A~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-------------- 149 (528)
T COG0365 84 ATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-------------- 149 (528)
T ss_pred HHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------
Confidence 99999999999999999999999999999999999988765443221110 00000022222211
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
..|.++..... ..........+|+++++|||||||.||||.++|..++.......... ..+.++|++++..++.|
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW 224 (528)
T COG0365 150 LWYDEAVEKAS-EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGW 224 (528)
T ss_pred ccHHHHhhccC-CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchh
Confidence 56666665442 23334447899999999999999999999999997766665544322 15669999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 009090 278 ILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (544)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
++|++. .+.++..|++++++.+ ++..+++.++++++|+++..|+.++.|.+.-.
T Consensus 225 ~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------------------- 283 (528)
T COG0365 225 IYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------------------- 283 (528)
T ss_pred hhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC---------------------
Confidence 999997 7778999999999876 38899999999999999999999999865311
Q ss_pred HHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCc
Q 009090 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (544)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~ 432 (544)
..++|+ ++||.+.++||+++++..+|+.+.+|++|.+.||+||++++.....+ .
T Consensus 284 ----------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~--~ 337 (528)
T COG0365 284 ----------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP--P 337 (528)
T ss_pred ----------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC--C
Confidence 223334 49999999999999999999999999999999999999966665545 3
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhhhcccCCccccCceEEEccCCcEE
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~--~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~ 510 (544)
.++++.|.|+||+++.++| +++ .+++.++ |+|.++.+ +++++||++++...+.|.+.||.|||.+++|+||+++
T Consensus 338 ~~~g~~g~p~pG~~~~vvd-d~g--~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~ 413 (528)
T COG0365 338 VKNGSSGLPLPGYAVRRVD-DEG--NPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFW 413 (528)
T ss_pred cCCCCCCCCCCCceeEEEC-CCC--CcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEE
Confidence 3446669999999999999 553 4555567 99999986 9999999999999998866699999999999999999
Q ss_pred EEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 511 ~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||.||+||+ .|+++.|.|||++|.+||+|.|
T Consensus 414 i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaE 446 (528)
T COG0365 414 LHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAE 446 (528)
T ss_pred EEeeccceEec-cCeeccHHHHHHHHHhCcceee
Confidence 99999999998 7999999999999999999976
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=499.54 Aligned_cols=429 Identities=22% Similarity=0.212 Sum_probs=342.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.+.|.+.++++|+++|+.+. +. .++||+||.++++++|+.|.+ .+||+|+++++|++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999988643 21 479999999999999999987 389999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++|+.++++++|++.+....+.............++..++.... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998776554432211100001123333221100 00
Q ss_pred HHHHHh------cccc---cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEE
Q 009090 200 WDEFLH------LGKV---NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 200 ~~~l~~------~~~~---~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (544)
+.+... .... .........++++++++|||||||.||+|.+||+++..........+ .++.+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l 228 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM 228 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence 000000 0000 00112234678999999999999999999999999998877665554 678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
+.+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.++..|++......
T Consensus 229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------- 295 (539)
T PRK06334 229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE------------- 295 (539)
T ss_pred EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------
Confidence 9999999999875 5668999999988753 89999999999999999999999998875432111
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceee
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTV 426 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~ 426 (544)
...++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++.
T Consensus 296 --------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 343 (539)
T PRK06334 296 --------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343 (539)
T ss_pred --------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence 0113899999999999999999999988 6899999999999987776
Q ss_pred ccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc--cCCccccCceEEEc
Q 009090 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQIL 504 (544)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~--~~g~~~TGDlg~~~ 504 (544)
..........++|+|+++++++|++ ++ +..+++.|+.|||+|+|+.++.||+++++.+.... .+|||+|||+|++|
T Consensus 344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~-~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d 421 (539)
T PRK06334 344 NTVNSPKHESCVGMPIRGMDVLIVS-EE-TKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD 421 (539)
T ss_pred ccCCCCCCCCcCceecCCCEEEEEc-CC-CCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence 5444333346899999999999998 43 33566788999999999999999999998654332 36799999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++|++++.||.+|+|++ +|++|+|.|||++|.+||+|.+
T Consensus 422 ~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~ 460 (539)
T PRK06334 422 RHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNA 460 (539)
T ss_pred CCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCcc
Confidence 99999999999999997 8999999999999999999964
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=509.58 Aligned_cols=454 Identities=18% Similarity=0.237 Sum_probs=346.3
Q ss_pred CCcccHHHHHHHHHHc--CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 39 SDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
...|+..++|+++++. +|+++|+++. ...++..+++||.||.++++++|+.|++.|+++||+|+++++|++++++
T Consensus 56 ~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~ 132 (647)
T PTZ00237 56 GELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLI 132 (647)
T ss_pred CeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 4567888999998865 7999999875 3333335789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccch---------hhHhhcccccccccccEEEEecCCc---h
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---A 184 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---~ 184 (544)
++|||+++|++++|+++.++.+++.++|++++++++|+++.. ...+.............++.+.... .
T Consensus 133 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 212 (647)
T PTZ00237 133 AMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212 (647)
T ss_pred HHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccc
Confidence 999999999999999999999999999999999999997632 1111111110000122333321110 0
Q ss_pred HHHHHH--hhCCceeeeHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHh-HHHHHhhhhhhhh
Q 009090 185 EQKEMA--VQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLD 257 (544)
Q Consensus 185 ~~~~~~--~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~ 257 (544)
...... .........|++++.... ..........++++++|+|||||||.||||+++|.+ +..........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~- 291 (647)
T PTZ00237 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII- 291 (647)
T ss_pred cccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-
Confidence 000000 000002245666654321 111122345778999999999999999999999998 444333222222
Q ss_pred cccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCC-------hhhHHHHhhhhCCcEEEeccHHHHHHHHHH
Q 009090 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGI 330 (544)
Q Consensus 258 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~ 330 (544)
....++++++..|+.|+.+....+.++..|+++++.+++ +..+++.++++++|++.++|++++.|.+..
T Consensus 292 ----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 367 (647)
T PTZ00237 292 ----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTD 367 (647)
T ss_pred ----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhC
Confidence 566789999999999987666677789999999998652 578999999999999999999999886531
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCc
Q 009090 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410 (544)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~ 410 (544)
.... .....+++ ++||.++++|+++++++.+++++.+|++
T Consensus 368 ~~~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~ 407 (647)
T PTZ00237 368 PEAT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIK 407 (647)
T ss_pred cccc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCC
Confidence 1000 00011122 4899999999999999999999999999
Q ss_pred eEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhh
Q 009090 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTR 487 (544)
Q Consensus 411 i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~---~v~~gy~~~~~~~~ 487 (544)
+++.||+||+++..+..........+++|+|.|+++++|+| +++ .+++.|+.|||++++| +++.|||++++.+.
T Consensus 408 i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g--~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~ 484 (647)
T PTZ00237 408 SSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDG--KELNVNEIGEVAFKLPMPPSFATTFYKNDEKFK 484 (647)
T ss_pred EEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCC--CCCCCCCceEEEEeccCCchhhCceeCCHHHHH
Confidence 99999999998765543332223337899999999999998 544 3455678999999986 78999999999998
Q ss_pred hccc--CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 488 ESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 488 ~~~~--~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+.|. +|||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 485 ~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~e 542 (647)
T PTZ00237 485 QLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLE 542 (647)
T ss_pred HHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCcee
Confidence 8773 799999999999999999999999999997 7999999999999999999975
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-59 Score=500.31 Aligned_cols=449 Identities=23% Similarity=0.283 Sum_probs=353.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...|+.++|.++++++|+++|+++... .+.....+++||.||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus 23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 356899999999999999999987511 1122344789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh-----hHhhcccccccccccEEEEecCCchH--HHHHHh-
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMAV- 191 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 191 (544)
||+++| +++|+++.++++++.++++.++++++|++.... ..+.... ......+.++.++..... ......
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVP 179 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCccccccccccccc
Confidence 999999 568999999999999999999999999986432 1111111 112334444444332100 000000
Q ss_pred ----hCCceeeeHHHHHhccccccc-ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCC
Q 009090 192 ----QTGIKPYSWDEFLHLGKVNEM-EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD 266 (544)
Q Consensus 192 ----~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~ 266 (544)
.......+|.+.+........ ......++++++++|||||||.||+|.+||++++.........+ .+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~ 254 (632)
T PRK07529 180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPG 254 (632)
T ss_pred ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCC
Confidence 011123455555443322111 12234678999999999999999999999999998877666555 67889
Q ss_pred cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----C---hhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhc
Q 009090 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (544)
Q Consensus 267 d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (544)
|++++..|++|.++... .+.++..|+++++.+. + ...+++.++++++|++.++|+++..|.+....
T Consensus 255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------ 328 (632)
T PRK07529 255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD------ 328 (632)
T ss_pred CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc------
Confidence 99999999999999875 6678999999999763 2 35788999999999999999999887642100
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccc
Q 009090 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~t 418 (544)
.. ..++||.+++||+++++++.++|++.+++++++.||+|
T Consensus 329 --------------------------------~~--------~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~T 368 (632)
T PRK07529 329 --------------------------------GH--------DISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT 368 (632)
T ss_pred --------------------------------CC--------CccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeeccc
Confidence 00 12489999999999999999999999999999999999
Q ss_pred cccCceeeccCCCccccCccCcCccCceEEEeecCCCCC--CCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCcc
Q 009090 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495 (544)
Q Consensus 419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~--~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~ 495 (544)
|++.++..++.......+++|.|+|+++++++..++++. .+++.|+.|||+|+|+.++.||++++. +...| .+|||
T Consensus 369 E~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~ 447 (632)
T PRK07529 369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWL 447 (632)
T ss_pred ccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCce
Confidence 999877766554444568999999999999986444442 567788999999999999999998754 44444 78999
Q ss_pred ccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 496 ~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+
T Consensus 448 ~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~ 495 (632)
T PRK07529 448 NTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVAL 495 (632)
T ss_pred EcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeE
Confidence 99999999999999999999999996 8999999999999999999864
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=497.04 Aligned_cols=435 Identities=21% Similarity=0.198 Sum_probs=343.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..-++.++|++.++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l 75 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISG----N-----RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL 75 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecC----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468899999999999999998743 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++++.+++++++++++..................++...+....... .......
T Consensus 76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~ 151 (563)
T PLN02860 76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLT 151 (563)
T ss_pred HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccc
Confidence 999999999999999999999999999999999998764322211111111222223332221100000 0000111
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
++++...............++++++++|||||||.||+|.++|+++..........+ .+.++|+++...|++|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~ 226 (563)
T PLN02860 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG 226 (563)
T ss_pred cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence 122111100011111233578999999999999999999999999987766654444 678899999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
++...+.++..|+++++.+. ++..+++.++++++|++.++|.++..|.+.......
T Consensus 227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------- 283 (563)
T PLN02860 227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT----------------------- 283 (563)
T ss_pred cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc-----------------------
Confidence 98877888999999998876 999999999999999999999999988754321100
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC------
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE------ 431 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~------ 431 (544)
....+++|.+++||+++++++.++|++.| +.++++.||+||+++.+.......
T Consensus 284 --------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 343 (563)
T PLN02860 284 --------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESP 343 (563)
T ss_pred --------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccc
Confidence 01124899999999999999999999998 789999999999986554322111
Q ss_pred ----------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCc
Q 009090 432 ----------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494 (544)
Q Consensus 432 ----------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~ 494 (544)
.....++|+|.|++++++++ ++ .++.|||+++|+.++.||+++++.+.+.+ .+||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~ 415 (563)
T PLN02860 344 KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGW 415 (563)
T ss_pred hhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCe
Confidence 11123689999999999988 33 35789999999999999999999998887 6899
Q ss_pred cccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 495 ~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+
T Consensus 416 ~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 464 (563)
T PLN02860 416 LDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVAS 464 (563)
T ss_pred EEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcce
Confidence 999999999999999999999999997 8999999999999999999975
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=502.40 Aligned_cols=448 Identities=17% Similarity=0.195 Sum_probs=346.8
Q ss_pred cccHHHHHHHHHH-cCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
.|...++|+++++ .+|+++|+++. ....+..+++||.||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus 87 ~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~l 163 (666)
T PLN02654 87 TNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAML 163 (666)
T ss_pred eeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4555788888876 48999999875 3334455799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhh---------cccccc---cccccEEEEecCCchHHH
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPDCRS---AQRLRVMVCFTSLTAEQK 187 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~ 187 (544)
||+++|++++|+++.++.+++..+|+.++++++|+++....... ...... ......++..........
T Consensus 164 A~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
T PLN02654 164 ACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKR 243 (666)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccc
Confidence 99999999999999999999999999999999999876432110 000000 001111222221100000
Q ss_pred HHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHH-hhhhhhhhcccCCCCCC
Q 009090 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVD 266 (544)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~ 266 (544)
............|+++.... ..........++++++|+|||||||.||||+++|.+++... ..+...+ ++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~ 317 (666)
T PLN02654 244 EDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPT 317 (666)
T ss_pred cccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCC
Confidence 00000001123355554321 11112233567999999999999999999999999976433 3333333 78899
Q ss_pred cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchH
Q 009090 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (544)
Q Consensus 267 d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~ 340 (544)
|++++..|+.|++++.. .+.+++.|++++++.+ ++..+++.++++++|+++++|+++..|.+.....
T Consensus 318 d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------- 390 (666)
T PLN02654 318 DVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY------- 390 (666)
T ss_pred cEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-------
Confidence 99999999999998765 5678999999999864 6889999999999999999999999886431100
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeecc
Q 009090 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGL 417 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~ 417 (544)
....++ ++||.++++|+++++++.+++.+.+| +++.+.||+
T Consensus 391 ----------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~ 434 (666)
T PLN02654 391 ----------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 434 (666)
T ss_pred ----------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccc
Confidence 011122 38999999999999999999999997 689999999
Q ss_pred ccccCceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---c
Q 009090 418 TETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---I 491 (544)
Q Consensus 418 tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~ 491 (544)
||+++......+.. ...++++|.|.+|++++|+| +++. +++.++.|||++++ |+++.||+++++.+...+ .
T Consensus 435 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~--~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~ 511 (666)
T PLN02654 435 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGK--EIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPF 511 (666)
T ss_pred cccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCC--CCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcC
Confidence 99988766544432 34558999999999999998 5544 34556789999998 789999999999887765 3
Q ss_pred CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 492 ~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 512 ~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~e 563 (666)
T PLN02654 512 AGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAE 563 (666)
T ss_pred CCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeee
Confidence 799999999999999999999999999997 7999999999999999999975
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=493.53 Aligned_cols=461 Identities=23% Similarity=0.273 Sum_probs=354.3
Q ss_pred CCCCCCCCCCcCcceeccccC----CCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHH
Q 009090 11 GKEGKDGKPSVGPVYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEV 86 (544)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~ 86 (544)
+-.+-..+|....++|....+ .++++. ....++.++|+++++++|+++|+++. +...+.++.+||+||.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v 90 (624)
T PRK12582 15 PFRPLNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAV 90 (624)
T ss_pred CCCccccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHH
Confidence 344556788888889886544 445544 45678999999999999999999865 3334567899999999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCCh-----hHHHHHHHhcCceEEEEccch-hh
Q 009090 87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VK 160 (544)
Q Consensus 87 ~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~ 160 (544)
+++|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++. +++.++++.++++++|+++.. ..
T Consensus 91 ~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 170 (624)
T PRK12582 91 DALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFA 170 (624)
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHH
Confidence 999999999999999999999999999999999999999999999999875 899999999999999998642 11
Q ss_pred HhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCcee
Q 009090 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGV 238 (544)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v 238 (544)
........ ... .++.+..... ......++++........ .......++++++++|||||||.||||
T Consensus 171 ~~~~~~~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV 238 (624)
T PRK12582 171 RALAALDL--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAV 238 (624)
T ss_pred HHHHhhhh--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceE
Confidence 11111111 111 2233322110 011234555443221110 111234578999999999999999999
Q ss_pred eeccHhHHHHHhhhhhhhhcccCCCC---CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--C---hhhHHHHhh
Q 009090 239 VLTHETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLM 309 (544)
Q Consensus 239 ~~sh~~l~~~~~~~~~~~~~~~~~~~---~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~ 309 (544)
++||+++...+......+ ... ..++++.++|++|.+|+.. ++.++..|+++++.+. + ...+++.++
T Consensus 239 ~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~ 313 (624)
T PRK12582 239 INTQRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLR 313 (624)
T ss_pred EeeHHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHH
Confidence 999999988776654332 222 3589999999999999876 4457889999998753 2 345677888
Q ss_pred hhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEE
Q 009090 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389 (544)
Q Consensus 310 ~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~ 389 (544)
++++|+++++|.++..|.+...... .....++ ++||.++
T Consensus 314 ~~~~t~~~~vP~~~~~l~~~~~~~~---------------------------------~~~~~~~--------~slr~i~ 352 (624)
T PRK12582 314 EISPTVYGNVPAGYAMLAEAMEKDD---------------------------------ALRRSFF--------KNLRLMA 352 (624)
T ss_pred hcCCeEEeccCHHHHHHHHHHhhCH---------------------------------HHHHHHh--------hheeEEE
Confidence 9999999999999998865432210 0111112 3899999
Q ss_pred EcCCCCCHHHHHHHHHhc------CCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCC
Q 009090 390 SGGAPLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP 463 (544)
Q Consensus 390 ~~G~~l~~~~~~~~~~~~------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g 463 (544)
+||+++++++.++|.+.+ ++++++.||+||++.++...... ....+++|+|+||+++++++ .|
T Consensus 353 ~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G 421 (624)
T PRK12582 353 YGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VG 421 (624)
T ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CC
Confidence 999999999999998863 36799999999998766533222 23457999999999999975 35
Q ss_pred CCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEE-c---cCCcEEEEeeccceeecCCCceechHhHH--HHh
Q 009090 464 PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVY 536 (544)
Q Consensus 464 ~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~-~---~~g~l~~~GR~~d~i~~~~g~~v~~~~iE--~~l 536 (544)
+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++ | ++|+++++||.+|+|++++|++|+|.+|| .++
T Consensus 422 ~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l 501 (624)
T PRK12582 422 DKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA 501 (624)
T ss_pred CceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHH
Confidence 689999999999999999999999988 6899999999998 4 46999999999999998789999998884 688
Q ss_pred hcCCCccC
Q 009090 537 CVAPIIED 544 (544)
Q Consensus 537 ~~~~~V~~ 544 (544)
.+||.|.|
T Consensus 502 ~~~p~V~~ 509 (624)
T PRK12582 502 ACSPVIHD 509 (624)
T ss_pred hcCcchhe
Confidence 99999875
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=496.87 Aligned_cols=448 Identities=17% Similarity=0.158 Sum_probs=348.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
...+...++|+++++.+|+++|+++. +..++..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566678999999999999999875 434455688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------HhhcccccccccccEEEEecCCchHHHHH
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (544)
|||+++|++++|+++.++.+++.++|+.++++++|+++.... .+.............++.++......
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 202 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM--- 202 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence 999999999999999999999999999999999999864321 11111111111233444444321000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH-HhhhhhhhhcccCCCCCCcE
Q 009090 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~ 268 (544)
........+|+++.........+.....++++++|+|||||||.||||.++|.+++.. ...+...+ ++.++|+
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 276 (628)
T TIGR02316 203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV 276 (628)
T ss_pred -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence 0001123456665543211122222346789999999999999999999999997543 33333333 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
+++..|+.|..++.. .+.++..|+++++.++ ++..+++.++++++|+++.+|+++..|.+....
T Consensus 277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 346 (628)
T TIGR02316 277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA---------- 346 (628)
T ss_pred EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc----------
Confidence 999999999998754 6678999999999863 678899999999999999999999877542110
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccC
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~ 422 (544)
.....+ +++||.+++||+++++++.+++++.++..+++.||+||++.
T Consensus 347 -------------------------~~~~~~--------l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~ 393 (628)
T TIGR02316 347 -------------------------WLRKHD--------LSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW 393 (628)
T ss_pred -------------------------ccccCC--------ccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence 001111 24899999999999999999999999999999999999986
Q ss_pred ceeeccCCC---ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhcc----cC
Q 009090 423 PTTVCFPDE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID 492 (544)
Q Consensus 423 ~~~~~~~~~---~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~---~v~~gy~~~~~~~~~~~----~~ 492 (544)
.++...... ....+++|.|+|+++++|++ ++. ..+++.|+.|||+++|| +.+.+|+++++...+.+ .+
T Consensus 394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~-g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~ 471 (628)
T TIGR02316 394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EAT-GRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKR 471 (628)
T ss_pred eeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCC-CCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCC
Confidence 544433221 23347899999999999999 422 24556778999999998 56789999988776654 56
Q ss_pred CccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 493 g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 472 ~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~e 522 (628)
T TIGR02316 472 PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAE 522 (628)
T ss_pred CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcce
Confidence 79999999999999999999999999997 7999999999999999999975
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=492.46 Aligned_cols=428 Identities=20% Similarity=0.209 Sum_probs=350.3
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
.++.++|+++++++|+++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~----~-----~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE----R-----GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999853 2 47999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHH
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (544)
+++|++++|+++.++.+++.++++.++++++|++++....+.... ........+....+... ........++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 191 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALP-PDLGRLRAWGGNPDDDE-------PSGSTDETLD 191 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhc-cccccceEEEEecCccc-------cCCcCcccHH
Confidence 999999999999999999999999999999999987665543321 11122222222111100 0012344666
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHH
Q 009090 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (544)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 281 (544)
++...... ...+...+++++++|||||||.||+|.++|+++...+..+...+ .+..+++++...|++|..|+
T Consensus 192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~ 263 (549)
T PRK07788 192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW 263 (549)
T ss_pred HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence 66653321 12223456789999999999999999999999998877765555 67889999999999999998
Q ss_pred HHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 009090 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (544)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (544)
...+.++..|+++++... ++..+++.++++++|++.++|+++..+++......
T Consensus 264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------- 317 (549)
T PRK07788 264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------- 317 (549)
T ss_pred HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------
Confidence 877778999999998765 89999999999999999999999998865322100
Q ss_pred CcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCc
Q 009090 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (544)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (544)
... ..++||.+++||+++++++.+++++.++..+++.||+||++..+...........+++|+
T Consensus 318 ---------~~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 380 (549)
T PRK07788 318 ---------AKY--------DTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR 380 (549)
T ss_pred ---------CCC--------CCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence 000 124899999999999999999999999999999999999987665544333334578999
Q ss_pred CccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceee
Q 009090 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (544)
Q Consensus 441 ~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~ 520 (544)
|.+++++++++ +++. +++.|+.|||+++|+.++.||++++.. ...+|||+|||+|++|+||++++.||.||+|+
T Consensus 381 ~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~ 454 (549)
T PRK07788 381 PPKGVTVKILD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV 454 (549)
T ss_pred CCCCcEEEEEC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence 99999999998 5443 455688999999999999999998765 23589999999999999999999999999999
Q ss_pred cCCCceechHhHHHHhhcCCCccC
Q 009090 521 ISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 521 ~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+ +|++|+|.+||++|.+||+|.|
T Consensus 455 ~-~G~~v~p~eIE~~l~~~~~V~~ 477 (549)
T PRK07788 455 S-GGENVFPAEVEDLLAGHPDVVE 477 (549)
T ss_pred E-CCEEECHHHHHHHHHhCCCeeE
Confidence 7 8999999999999999999874
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=492.28 Aligned_cols=432 Identities=22% Similarity=0.287 Sum_probs=340.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + ..+.++++||.||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 112 (614)
T PRK08180 37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL 112 (614)
T ss_pred cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence 4678999999999999999999764 2 33446789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCC-----hhHHHHHHHhcCceEEEEccch-hhHhhcccccccccccEEEEecCCchHHHHHHhhC
Q 009090 120 ACNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (544)
||+++|++++|++|.++ .+++.++|+.++++++|+++.. .......... .. ..++.......
T Consensus 113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~--------- 180 (614)
T PRK08180 113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--AD-VEVVAVRGAVP--------- 180 (614)
T ss_pred HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CC-ceEEEecCCCC---------
Confidence 99999999999999988 7899999999999999998642 1211111110 11 12222221100
Q ss_pred CceeeeHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCC--CCcEE
Q 009090 194 GIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVY 269 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~ 269 (544)
.....+|+++........ .......++++++|+|||||||.||||++||+++...+......+ ... .++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~ 255 (614)
T PRK08180 181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL 255 (614)
T ss_pred CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence 001235566554321111 111234678999999999999999999999999998877665544 332 56899
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHH
Q 009090 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (544)
Q Consensus 270 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (544)
++++|++|.+++.. .+.+++.|+++++.++ ++..+++.++++++|+++++|.++..|++.+.....
T Consensus 256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~-------- 327 (614)
T PRK08180 256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA-------- 327 (614)
T ss_pred EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh--------
Confidence 99999999999865 5568999999998763 345778899999999999999999998765432110
Q ss_pred HHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHh----cC--CceEEeecc
Q 009090 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGL 417 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~i~~~YG~ 417 (544)
. ...++++||.+++||+++++++.++|++. +| +++++.||+
T Consensus 328 -------------------------~--------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~ 374 (614)
T PRK08180 328 -------------------------L--------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM 374 (614)
T ss_pred -------------------------h--------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence 0 01122489999999999999999999875 33 679999999
Q ss_pred ccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccc
Q 009090 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496 (544)
Q Consensus 418 tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~ 496 (544)
||++++++...... ...+++|+|+|++++++++ + +..|||+++|++++.||+++|+.+.+.| .+|||+
T Consensus 375 TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~ 443 (614)
T PRK08180 375 TETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYR 443 (614)
T ss_pred cccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCcee
Confidence 99987766544332 3458999999999999988 2 2469999999999999999999999988 689999
Q ss_pred cCceEEE----ccCCcEEEEeeccceeecCCCceec--hHhHHHHhhcCCCccC
Q 009090 497 TGDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~----~~~g~l~~~GR~~d~i~~~~g~~v~--~~~iE~~l~~~~~V~~ 544 (544)
|||+|++ |++|++++.||.+|+|++++|++++ |.|+|.++.+||+|+|
T Consensus 444 TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~ 497 (614)
T PRK08180 444 SGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQD 497 (614)
T ss_pred ccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhhe
Confidence 9999999 4689999999999999877899777 7889999999999975
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=495.76 Aligned_cols=444 Identities=18% Similarity=0.239 Sum_probs=351.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..|...++|+++++.+|+++|+++. +...+..+.+||.||.+++.++|+.|++.|+++||+|+++++|++++++++|
T Consensus 55 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 131 (625)
T TIGR02188 55 ELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAML 131 (625)
T ss_pred EEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4567788898999999999999876 3334556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------Hhhcccccccc-cccEEEEecCCchHHHHH
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKEM 189 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 189 (544)
||+++|++++|+++.++.+++.++++.++++++|+++.... .+..... ..+ ....++..........
T Consensus 132 A~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 208 (625)
T TIGR02188 132 ACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP-- 208 (625)
T ss_pred HHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC--
Confidence 99999999999999999999999999999999999875321 1111111 111 2334444432211000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhh-hhhhhcccCCCCCCcE
Q 009090 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDV 268 (544)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~ 268 (544)
........|+++.... ..........++++++|+|||||||.||||+++|.+++...... ...+ ++.++|+
T Consensus 209 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~ 280 (625)
T TIGR02188 209 --WVEGRDVWWHDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDI 280 (625)
T ss_pred --ccccccccHHHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcE
Confidence 0001123456655432 11222334577899999999999999999999999976554332 2222 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
+++..|+.|+.+... .+.++..|+++++.++ ++..+++.++++++|++.++|+++..|.+.....
T Consensus 281 ~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------- 351 (625)
T TIGR02188 281 FWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------- 351 (625)
T ss_pred EEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence 999999999988764 6678999999999753 6899999999999999999999998876532110
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeecccc
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE 419 (544)
.+.. .+++||.++++|+++++++.+++.+.++ +++++.||+||
T Consensus 352 --------------------------~~~~--------~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE 397 (625)
T TIGR02188 352 --------------------------VKKH--------DLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE 397 (625)
T ss_pred --------------------------cccC--------CccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence 0111 1248999999999999999999999885 78999999999
Q ss_pred ccCceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCC-CCCCCeEEEec--CCccccccCChhhhhhcc---cC
Q 009090 420 TCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (544)
Q Consensus 420 ~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~-~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~ 492 (544)
+++.++...+.. ...++++|+|.+++++++++ +++.. ++ .|+.|||+++| |+++.||+++++.+.+.+ .+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~--~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~ 474 (625)
T TIGR02188 398 TGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNP--VEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFP 474 (625)
T ss_pred cCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCC--CCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCC
Confidence 998766554432 33458899999999999998 55443 34 67899999999 689999999998877765 47
Q ss_pred CccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 493 g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 475 g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e 525 (625)
T TIGR02188 475 GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAE 525 (625)
T ss_pred CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999999999999999999997 7999999999999999999975
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=484.01 Aligned_cols=432 Identities=25% Similarity=0.291 Sum_probs=353.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.+.|+.+++.+|+++|+++. +...+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 357999999999999999999876 43445568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh-----hHhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
|+++|++++|++|.++.+++.++++.++++++++++... ..+.+. .........++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------ 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRL-RPELPALRHVVVVGGDG------------ 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHH-hhhCCCcceEEEecCCC------------
Confidence 999999999999999999999999999999999987541 111111 11122334444443221
Q ss_pred eeeeHHHHHhccc-----c--cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcE
Q 009090 196 KPYSWDEFLHLGK-----V--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 196 ~~~~~~~l~~~~~-----~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (544)
..++.++..... . .........++++++++|||||||.||+|.++|+++...+......+ .+.++++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~ 240 (547)
T PRK13295 167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV 240 (547)
T ss_pred -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence 112333332110 0 01112234678999999999999999999999999998887766555 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 269 ~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+++..|++|..++.. .+.++..|+++++.+. ++..+++.++++++|.+.++|.++..+........
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~------------ 308 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG------------ 308 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC------------
Confidence 999999999998765 6668999999998876 89999999999999999999999988765322110
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceee
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 426 (544)
...++||.+++||+++++++.+++++.++.++++.||+||++.+++.
T Consensus 309 ---------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 355 (547)
T PRK13295 309 ---------------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT 355 (547)
T ss_pred ---------------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence 01138999999999999999999999999999999999999887665
Q ss_pred ccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc
Q 009090 427 CFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505 (544)
Q Consensus 427 ~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~ 505 (544)
..... .....++|+|.++++++|++ +++ .+++.|+.|||+|+|+.++.||+++++.+... .+|||+|||+|++++
T Consensus 356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~ 431 (547)
T PRK13295 356 KLDDPDERASTTDGCPLPGVEVRVVD-ADG--APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDA 431 (547)
T ss_pred cCCCcchhccCccccccCCcEEEEEC-CCC--CCCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcC
Confidence 54322 22336889999999999998 543 45667789999999999999999999888765 689999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|.+++.||.+|+|++ +|++++|.+||++|.++|+|.|
T Consensus 432 ~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~ 469 (547)
T PRK13295 432 DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQ 469 (547)
T ss_pred CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 9999999999999997 8999999999999999999875
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=486.09 Aligned_cols=436 Identities=19% Similarity=0.230 Sum_probs=357.4
Q ss_pred CcccHHHHHHHHHH-cCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
..+.+.+++++++. .+|+++|+++. +.. ..+++||.||.+++.++|.+|.+.|+++||+|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45667789998887 47999999876 332 3368999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|+++.++.+++.++++.+++++++++.......... ..+..+.++.+++... ......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCcc
Confidence 99999999999999999999999999999999999988765443211 2223344444433211 011234
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
++.++...... ........++++++++|||||||.||+|.++|+++...+......+ .+.++|++++..|+.|.
T Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~ 258 (570)
T PRK04319 185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV 258 (570)
T ss_pred CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence 56665543321 2223344678999999999999999999999999988877665555 67889999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 279 ~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
+|+.. .+.++..|+++++... ++..+++.++++++|+++++|.+++.+.+.....
T Consensus 259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 316 (570)
T PRK04319 259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL---------------------- 316 (570)
T ss_pred hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence 88764 6678999999998764 8999999999999999999999999876421100
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcccc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 435 (544)
....+ .++||.++++|+++++++.+++++.++.++++.||+||+++.+...........
T Consensus 317 -------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~ 375 (570)
T PRK04319 317 -------------VKKYD--------LSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP 375 (570)
T ss_pred -------------cccCC--------cccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence 00011 138999999999999999999999999999999999999987665544333445
Q ss_pred CccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEe
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~G 513 (544)
+++|+|.|+++++|++ +++. +++.|+.|||+++| +.++.||+++++.+.+.|.+|||+|||+|+++++|++++.|
T Consensus 376 ~~~G~p~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G 452 (570)
T PRK04319 376 GSMGKPLPGIEAAIVD-DQGN--ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG 452 (570)
T ss_pred CcCcCCCCCCEEEEEC-CCCC--CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence 8899999999999998 5444 34677999999997 89999999999999999999999999999999999999999
Q ss_pred eccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 514 RKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 514 R~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|.+|+|++ +|++|+|.+||++|.+||+|+|
T Consensus 453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~ 482 (570)
T PRK04319 453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAE 482 (570)
T ss_pred cCCCEEEE-CCEEECHHHHHHHHhhCCCeee
Confidence 99999997 8999999999999999999875
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=433.43 Aligned_cols=429 Identities=21% Similarity=0.224 Sum_probs=362.5
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|..+|.++||++|+++. . +.+||.||.+++.++|..|++.|+++||+|++..||..+|++++|
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 5789999999999999999999853 3 569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccch----hhHhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK----VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
|++++|+.+|.--|.....||.++.+...++.+|+++.. ...+......+...++.++...+....
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP---------- 166 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence 999999999988888889999999999999999887643 122333344455677777776443211
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
...+..+.... ....+..+..++++++...+.||||.||.++.||.+...++....+.+ .+++.+++++.+|.
T Consensus 167 -~~~~~~~~~~a-~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~ 239 (542)
T COG1021 167 -SVLEAALCHPA-GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPA 239 (542)
T ss_pred -chhhhhhhCcc-ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccc
Confidence 11222232222 223334566788899999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 009090 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (544)
Q Consensus 276 ~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
.|.+.+.. .+..++.|+++|+.+. ++...+-+|+++++|+...+|.....|++..+..
T Consensus 240 AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~------------------- 300 (542)
T COG1021 240 AHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE------------------- 300 (542)
T ss_pred ccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-------------------
Confidence 99988875 7778999999999876 9999999999999999999999988887654432
Q ss_pred HHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-
Q 009090 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE- 431 (544)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~- 431 (544)
.. +++|||.+-+||+.+++++.+++...+|+.+.+.+||.|.- +++.+-.+.
T Consensus 301 ------------------~~--------~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL-vnyTRLDDp~ 353 (542)
T COG1021 301 ------------------RA--------DLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL-VNYTRLDDPP 353 (542)
T ss_pred ------------------cC--------CchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh-hcccccCCch
Confidence 12 22499999999999999999999999999999999999954 344333332
Q ss_pred ccccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcE
Q 009090 432 MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 432 ~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l 509 (544)
.....+-|+|+ |..|++|+| .++ .++++||.|+|.++||..++|||+.|+.+.++| .+|||+|||++++|+||++
T Consensus 354 E~i~~TQGrPlsP~DEvrvvD-~dg--~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl 430 (542)
T COG1021 354 EIIIHTQGRPLSPDDEVRVVD-ADG--NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYL 430 (542)
T ss_pred HheeecCCCcCCCcceeEEec-CCC--CCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceE
Confidence 22334567665 788999999 443 567788999999999999999999999999999 8999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+.||.+|+|+ ++|+||..+|||+.|.+||.|.|
T Consensus 431 ~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~ 464 (542)
T COG1021 431 VVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHD 464 (542)
T ss_pred EEEeeehhhhc-cccchhhHHHHHHHHhhCchhhh
Confidence 99999999999 79999999999999999999975
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=489.77 Aligned_cols=442 Identities=19% Similarity=0.254 Sum_probs=348.4
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
+...++|+++++++|+++|+++. +...+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 67 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 143 (637)
T PRK00174 67 NVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143 (637)
T ss_pred EHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 44578888999999999999875 333334578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------HhhcccccccccccEEEEecCCchHHHHHHhh
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (544)
+++|++++|+++.++.+++.++++.++++++|+++.... .+.... ........++......... ..
T Consensus 144 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 218 (637)
T PRK00174 144 ARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----DW 218 (637)
T ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----Cc
Confidence 999999999999999999999999999999999875421 111111 1112333444433211000 00
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhh-hhhhhcccCCCCCCcEEEE
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLS 271 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~l~ 271 (544)
.......|+++.... ..........++++++++|||||||.||+|+++|.+++...... ...+ .+.++|++++
T Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~ 292 (637)
T PRK00174 219 VEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWC 292 (637)
T ss_pred CCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEE
Confidence 011233456655432 22222334567899999999999999999999999987554332 2222 6778899999
Q ss_pred ecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 272 ~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
..|++|..++.. .+.++..|+++++.++ ++..+++.++++++|++.++|++++.+.+.....
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------ 360 (637)
T PRK00174 293 TADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH------------ 360 (637)
T ss_pred cCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc------------
Confidence 999999988764 6678999999999753 6889999999999999999999998876531110
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeeccccccC
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCG 422 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE~~~ 422 (544)
.... .+++||.++++|+++++++.+++.+.++ +++++.||+||+++
T Consensus 361 -----------------------~~~~--------~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~ 409 (637)
T PRK00174 361 -----------------------PKKY--------DLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGG 409 (637)
T ss_pred -----------------------cccC--------CccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCC
Confidence 0001 1238999999999999999999999885 78999999999998
Q ss_pred ceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---cCCccc
Q 009090 423 PTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH 496 (544)
Q Consensus 423 ~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~g~~~ 496 (544)
.++...+.. ....+++|+|+++++++|+| +++. +++.|+.|||+++| |+++.||+++++.+.+.+ .+|||+
T Consensus 410 ~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~ 486 (637)
T PRK00174 410 IMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGN--PLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYF 486 (637)
T ss_pred ceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCC--CCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEE
Confidence 766544332 23347899999999999998 5443 45667899999999 689999999998877665 479999
Q ss_pred cCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 487 TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~ 533 (637)
T PRK00174 487 TGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAE 533 (637)
T ss_pred CCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999999999999997 7999999999999999999975
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=483.93 Aligned_cols=429 Identities=20% Similarity=0.213 Sum_probs=339.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCC----CCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~----~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
..++.++|...++++|+++|+++. +..+ ..++++||.||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~ 81 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA 81 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence 467889999999999999999875 3211 123479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc--hhhHhhcccccccccccEEEEecCCchHHHHHHhhCC
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (544)
+++||+++|++++|++|.++.+++.++++.++++++|++++ ....+.... ......++..+... .
T Consensus 82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~ 148 (552)
T PRK09274 82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L 148 (552)
T ss_pred HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence 99999999999999999999999999999999999998752 112111110 01122222222110 0
Q ss_pred ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecC
Q 009090 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (544)
.....++++...............++++++++|||||||.||+|.+||+++...+......+ .+.++++.++..|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p 223 (552)
T PRK09274 149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP 223 (552)
T ss_pred cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence 01123444432221222223345678999999999999999999999999999888776665 7888999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEEec--------CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 275 LAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 275 ~~~~~g~~~~~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
++|.+++ ..|+++++.. .++..+++.++++++|+++++|.++..|.+.......
T Consensus 224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------- 285 (552)
T PRK09274 224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGI----------- 285 (552)
T ss_pred HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCC-----------
Confidence 9876543 4577777654 2788999999999999999999999998764321110
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc--CCceEEeeccccccCce
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPT 424 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~ 424 (544)
.++++|.+++||+++++++.+++++.+ |+++++.||+||+++++
T Consensus 286 ----------------------------------~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 331 (552)
T PRK09274 286 ----------------------------------KLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS 331 (552)
T ss_pred ----------------------------------CCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence 124899999999999999999999999 46999999999998766
Q ss_pred eeccCC---------CccccCccCcCccCceEEEeecCCC-------CCCCCCCCCCCeEEEecCCccccccCChhhhhh
Q 009090 425 TVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488 (544)
Q Consensus 425 ~~~~~~---------~~~~~~~~G~~~~~~~v~i~~~~~~-------~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~ 488 (544)
+..... ......++|+|+|+++++|++ +.+ ...+++.|+.|||+++|+.++.||+++++.+..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~ 410 (552)
T PRK09274 332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL 410 (552)
T ss_pred eecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhh
Confidence 544321 111223789999999999998 322 235677889999999999999999999999887
Q ss_pred cc---cCC--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 489 SI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 489 ~~---~~g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.| .+| ||+|||+|++|+||+++++||.+|+|++ +|.+|+|.+||++|.+||+|+|
T Consensus 411 ~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 470 (552)
T PRK09274 411 AKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKR 470 (552)
T ss_pred hhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccce
Confidence 66 356 9999999999999999999999999997 7999999999999999999975
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=481.70 Aligned_cols=441 Identities=21% Similarity=0.190 Sum_probs=344.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc
Q 009090 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (544)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~ 111 (544)
..+..++....++.+.|.++|+++|+++|+++. ++. +.+||.||.++++++|+.|.+.|+++||+|+++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~ 76 (540)
T PRK05857 4 KKFQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNG 76 (540)
T ss_pred ccccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCC
Confidence 456678888899999999999999999999764 332 5799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 112 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
+++++++|||+++|++++|+++.++.+++.++++.++++++|+++...... ........... ++..+.....
T Consensus 77 ~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~------ 148 (540)
T PRK05857 77 PETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT------ 148 (540)
T ss_pred HHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc------
Confidence 999999999999999999999999999999999999999999987653221 11111111111 1222211100
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (544)
...... ... ..........++++++++|||||||.||+|.++|+++.+......... ........+++.++
T Consensus 149 -----~~~~~~-~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (540)
T PRK05857 149 -----RESEHS-LDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYS 219 (540)
T ss_pred -----cccccc-ccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeee
Confidence 000000 000 001112234678999999999999999999999999987654322110 00013456789999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 272 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
..|++|..++...+.+++.|+++++.+.++..+++.++++++|+++++|.++..+++......
T Consensus 220 ~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~----------------- 282 (540)
T PRK05857 220 PLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN----------------- 282 (540)
T ss_pred cCCccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-----------------
Confidence 999999999887778899999988766688999999999999999999999988865321110
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 431 (544)
. ..+++|.+++||++++....++ .+.+++++++.||+||++..+...+...
T Consensus 283 --------------------~--------~~~~lr~~~~gG~~~~~~~~~~-~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 333 (540)
T PRK05857 283 --------------------A--------TVPSLRLVGYGGSRAIAADVRF-IEATGVRTAQVYGLSETGCTALCLPTDD 333 (540)
T ss_pred --------------------C--------cCccceEEEEcCccCCchhHHH-HHHhCCeeecccCCCcCCceeeeccccc
Confidence 1 1238999999999999887764 4567999999999999986544333221
Q ss_pred ----ccccCccCcCccCceEEEeecCCCCC-C---CCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEE
Q 009090 432 ----MCMVGTAGPVSVYSELRLEEVPEMGY-S---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (544)
Q Consensus 432 ----~~~~~~~G~~~~~~~v~i~~~~~~~~-~---~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (544)
....+++|+|.+|++++|++ +++.. . .++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++
T Consensus 334 ~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~ 412 (540)
T PRK05857 334 GSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLER 412 (540)
T ss_pred ccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEE
Confidence 12347899999999999998 44331 1 124568899999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 504 ~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++|++++.||.+|+|++ +|.+|+|.+||++|..||+|+|
T Consensus 413 d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~ 452 (540)
T PRK05857 413 REDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVRE 452 (540)
T ss_pred cCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeE
Confidence 999999999999999997 8999999999999999999874
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=476.63 Aligned_cols=432 Identities=24% Similarity=0.303 Sum_probs=339.3
Q ss_pred HHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 44 AWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 44 l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
+..++.+ ..+|+++|+++. +. + .++||.||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDS---ST--G--FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred HHHHhcC--cccCCCCEEEEC---CC--C--CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 3444544 678999998853 22 2 369999999999999999999 999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (544)
++|++++|++|..+.+++.++++.+++++++++.+....+.... .. ++.+...... .........|.+
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~-----~~~~~~~~~~~~ 181 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG------VP-VIGVPENYDF-----DSKRIEFPKFYE 181 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC------Cc-EEecCccccc-----ccCccCcccHHH
Confidence 99999999999999999999999999999999987665543211 11 2222111000 000011234555
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH
Q 009090 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (544)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 282 (544)
+...... ........++++++++|||||||.||+|.+||+++...+..+.............+++++..+|++|.+|+.
T Consensus 182 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~ 260 (560)
T PLN02574 182 LIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS 260 (560)
T ss_pred HhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHH
Confidence 4433211 112233467899999999999999999999999998877655432111111224578899999999999987
Q ss_pred H-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 009090 283 I-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (544)
Q Consensus 283 ~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (544)
. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+.....
T Consensus 261 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------- 313 (560)
T PLN02574 261 LFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV--------------------------- 313 (560)
T ss_pred HHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc---------------------------
Confidence 6 4456788999988876 9999999999999999999999999886532110
Q ss_pred CcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccC-CCccccCcc
Q 009090 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMVGTA 438 (544)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~-~~~~~~~~~ 438 (544)
.. ...+++|.+++||+++++++.++|.+.+ ++.+++.||+||++.+++.... ......+++
T Consensus 314 ---------~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~v 376 (560)
T PLN02574 314 ---------CG--------EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSV 376 (560)
T ss_pred ---------cc--------CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCce
Confidence 00 0123899999999999999999999888 6899999999999876543222 222345789
Q ss_pred CcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccc
Q 009090 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN 517 (544)
Q Consensus 439 G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d 517 (544)
|.+.++++++|+| ++++ .+++.|+.|||||+|+.++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.+|
T Consensus 377 G~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d 454 (560)
T PLN02574 377 GLLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKE 454 (560)
T ss_pred eeeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchh
Confidence 9999999999998 4333 566788999999999999999999999998887 689999999999999999999999999
Q ss_pred eeecCCCceechHhHHHHhhcCCCccC
Q 009090 518 LIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 518 ~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++ +|++|+|.+||++|.+||+|.|
T Consensus 455 ~i~~-~G~~v~~~eiE~~l~~~~~V~~ 480 (560)
T PLN02574 455 IIKY-KGFQIAPADLEAVLISHPEIID 480 (560)
T ss_pred heEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9997 7999999999999999999875
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=482.54 Aligned_cols=446 Identities=16% Similarity=0.174 Sum_probs=345.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..|...++|+++++.+|+++|+++. +..++..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 127 (629)
T PRK10524 51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML 127 (629)
T ss_pred EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3455688899999899999999875 4344556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh---------hHhhcccccccccccEEEEecCCchHHHHHH
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (544)
||+++|++++|+++.++.+++.++|+.++++++|+++... ..+.+...........++.++......
T Consensus 128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---- 203 (629)
T PRK10524 128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM---- 203 (629)
T ss_pred HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----
Confidence 9999999999999999999999999999999999976421 111111111111233444443211000
Q ss_pred hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhh-hhhhhhcccCCCCCCcEE
Q 009090 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (544)
........+|.++.........+.....++++++++|||||||.||||.++|.++...... +...+ ++.++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~ 278 (629)
T PRK10524 204 ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETF 278 (629)
T ss_pred CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0001122345555443221122222346789999999999999999999999987544433 22222 67889999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHH
Q 009090 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (544)
Q Consensus 270 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (544)
++..|+.|..++.. .+.++..|+++++..+ ++..+++.++++++|+++++|++++.+.+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------- 347 (629)
T PRK10524 279 FCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA----------- 347 (629)
T ss_pred EEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc-----------
Confidence 99999999888654 6668999999998764 678899999999999999999999876542100
Q ss_pred HHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCc
Q 009090 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP 423 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 423 (544)
.....++ ++||.+++||+++++++.+++.+.+++++++.||+||++..
T Consensus 348 ------------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 395 (629)
T PRK10524 348 ------------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWP 395 (629)
T ss_pred ------------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccch
Confidence 0011122 38999999999999999999999999999999999999854
Q ss_pred eeeccCC---CccccCccCcCccCceEEEeecC-CCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhcc----cC
Q 009090 424 TTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----ID 492 (544)
Q Consensus 424 ~~~~~~~---~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~g~~Gei~v~~~---~v~~gy~~~~~~~~~~~----~~ 492 (544)
+...... .....+++|.|.++++++|++ + ++ .+++.|+.|||+++|| ..+.+|+++++...+.+ .+
T Consensus 396 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g--~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (629)
T PRK10524 396 ILAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTG--EPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGR 472 (629)
T ss_pred hhcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCC--CCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCC
Confidence 3332221 123347899999999999999 4 33 3467789999999998 57789999988776554 46
Q ss_pred CccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 493 g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 473 ~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e 523 (629)
T PRK10524 473 QVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAE 523 (629)
T ss_pred cEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcce
Confidence 89999999999999999999999999998 7999999999999999999975
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=484.33 Aligned_cols=447 Identities=18% Similarity=0.179 Sum_probs=343.2
Q ss_pred eeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 009090 25 YRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRV 104 (544)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V 104 (544)
|+|+..++..-.+ ....++.++|+++++.+|+++|+++....+..++.++.+||+||.++++++|++|.+. +++||+|
T Consensus 5 ~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V 82 (631)
T PRK07769 5 FHNPFDVNGKIRF-PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV 82 (631)
T ss_pred cCCcccccccccc-cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence 5666666555433 4557899999999999999999987510011234457899999999999999999987 8999999
Q ss_pred EEEecCchhHHHHHHHHHhcCCEEeec-CCCCC--hhHHHHHHHhcCceEEEEccchhhHhhccccccc-ccccEEEEec
Q 009090 105 GIYGANCPQWVEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFT 180 (544)
Q Consensus 105 ~l~~~n~~~~~~~~lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (544)
+++++|++++++++|||+++|++++|+ ++..+ .+++.++++.++++++|++++....+........ .....++..+
T Consensus 83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (631)
T PRK07769 83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD 162 (631)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence 999999999999999999999999999 45554 5789999999999999998876544322111000 0111222222
Q ss_pred CCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhccc
Q 009090 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE 260 (544)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~ 260 (544)
.... .. ..........++++++++|||||||.||||++||+++...+......+
T Consensus 163 ~~~~------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---- 216 (631)
T PRK07769 163 AVPD------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL---- 216 (631)
T ss_pred cccc------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc----
Confidence 1100 00 001111234678999999999999999999999999998877766555
Q ss_pred CCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCC---cEEEeccHHHHHHHHHHHH
Q 009090 261 DKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKK 332 (544)
Q Consensus 261 ~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~~~ 332 (544)
++..+|+++.++|++|.+|+...+.+++.|++++++++ ++..+++.++++++ +.+..+|.++..+.....
T Consensus 217 -~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~- 294 (631)
T PRK07769 217 -EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG- 294 (631)
T ss_pred -CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc-
Confidence 67889999999999999999877778888999988753 78889999998876 789999988776543100
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc---CC
Q 009090 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA 409 (544)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~ 409 (544)
.+ .......++ +++|.+++||+++++++.++|.+.| |.
T Consensus 295 ----~~---------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 335 (631)
T PRK07769 295 ----LP---------------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGL 335 (631)
T ss_pred ----cc---------------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCC
Confidence 00 000001122 3899999999999999999999987 33
Q ss_pred ---ceEEeeccccccCceeeccCCCc--------------------------cccCccCcCccCceEEEeecCCCCCCCC
Q 009090 410 ---FLVQGYGLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPL 460 (544)
Q Consensus 410 ---~i~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~ 460 (544)
.+++.||+||++..++..+.... ....++|+|.++.+++|++ ++++ .++
T Consensus 336 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~ 413 (631)
T PRK07769 336 PPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SEL 413 (631)
T ss_pred ChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCC
Confidence 59999999999876654432210 0124789999999999998 3322 456
Q ss_pred CCCCCCeEEEecCCccccccCChhhhhhccc------------------CCccccCceEEEccCCcEEEEeeccceeecC
Q 009090 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (544)
Q Consensus 461 ~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~------------------~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~ 522 (544)
+.|+.|||+++||.++.||+++++.+.+.|. +|||+|||+|+++ ||+|+++||.||+|++
T Consensus 414 ~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~- 491 (631)
T PRK07769 414 PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII- 491 (631)
T ss_pred CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-
Confidence 7789999999999999999999999988873 3899999999995 9999999999999997
Q ss_pred CCceechHhHHHHhhc-CCCccC
Q 009090 523 QGEYVALEYLENVYCV-APIIED 544 (544)
Q Consensus 523 ~g~~v~~~~iE~~l~~-~~~V~~ 544 (544)
+|++|+|.|||++|.+ ||+|.+
T Consensus 492 ~G~~V~p~eIE~~l~~~~p~v~~ 514 (631)
T PRK07769 492 DGRNHYPQDLEYTAQEATKALRT 514 (631)
T ss_pred CCeeeCHHHHHHHHHhccccccC
Confidence 8999999999999996 899863
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=466.56 Aligned_cols=408 Identities=26% Similarity=0.350 Sum_probs=345.2
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.+.|++++.++||++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+.++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE----E-----KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999754 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++..+.+++..+++.++++++++++.......... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876544321100 0013
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+++...............++++++++|||||||.||+|.+||.++...+......+ ++..+|++++.+|++|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence 33332211111122234678999999999999999999999999887766655444 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 009090 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (544)
+...+.++..|+++++.+. ++..+.+.++++++|++.++|+++..+.+.....
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------- 250 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------- 250 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence 8877788999999999887 9999999999999999999999999886432111
Q ss_pred cCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC-CccccCcc
Q 009090 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA 438 (544)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~ 438 (544)
....++|.+++||+++++.+.+++++. ++++++.||+||++..++..... .....+++
T Consensus 251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v 309 (483)
T PRK03640 251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA 309 (483)
T ss_pred --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence 011389999999999999999988875 99999999999987654433332 34445899
Q ss_pred CcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccce
Q 009090 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (544)
Q Consensus 439 G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~ 518 (544)
|+|++++++++.+ +. .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||.+++.||.+|+
T Consensus 310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~ 385 (483)
T PRK03640 310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL 385 (483)
T ss_pred ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence 9999999999988 32 4667788999999999999999999999998899999999999999999999999999999
Q ss_pred eecCCCceechHhHHHHhhcCCCccC
Q 009090 519 IKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 519 i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++ +|.+++|.+||+.+.++|+|+|
T Consensus 386 i~~-~G~~v~~~~ie~~i~~~~~v~~ 410 (483)
T PRK03640 386 IIS-GGENIYPAEIEEVLLSHPGVAE 410 (483)
T ss_pred EEe-CCEEECHHHHHHHHHhCCCeeE
Confidence 997 8999999999999999999864
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=473.25 Aligned_cols=438 Identities=26% Similarity=0.347 Sum_probs=354.5
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+..++.++|.++++++|+++|+++. + +++||.||.+++.++|..|.+. |+++||+|+++++|++++++++
T Consensus 8 ~~~tl~~~l~~~a~~~~~~~a~~~~----~-----~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~ 78 (546)
T PRK08314 8 PETSLFHNLEVSARRYPDKTAIVFY----G-----RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78 (546)
T ss_pred CCCCHHHHHHHHHHHcCCCcceeec----C-----ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence 3668999999999999999999865 3 4799999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCch--HH-----HHHH-
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQ-----KEMA- 190 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~- 190 (544)
+||+++|++++|+++..+.+++.++++.++++++|++++....+....... ..+.++....... .. ....
T Consensus 79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (546)
T PRK08314 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR 156 (546)
T ss_pred HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence 999999999999999999999999999999999999988766554322111 1222222110000 00 0000
Q ss_pred ------hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCC
Q 009090 191 ------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (544)
Q Consensus 191 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (544)
.........|++...... ........++++++++|||||||.||+|.++|+++...+......+ .+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~ 229 (546)
T PRK08314 157 AEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST 229 (546)
T ss_pred cccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence 000112334555543321 1223345678999999999999999999999999999888766655 678
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 265 ~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
.+|++++.+|++|.+|+.. .+.++..|+++++.+. ++..+.+.++++++|++.++|.++..++....
T Consensus 230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~----------- 298 (546)
T PRK08314 230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG----------- 298 (546)
T ss_pred CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC-----------
Confidence 8999999999999999865 5568999999999886 88999999999999999999999887754210
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccC
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~ 422 (544)
....++ +++|.+++||+++++++.+++.+.++.++++.||+||++.
T Consensus 299 --------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 344 (546)
T PRK08314 299 --------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA 344 (546)
T ss_pred --------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence 111112 2799999999999999999999999999999999999988
Q ss_pred ceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--C--CccccC
Q 009090 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTG 498 (544)
Q Consensus 423 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--~--g~~~TG 498 (544)
.......... ...++|.|.+++++++++ ++. ..+++.|+.|||+++|+.++.||+++++.+.+.|. + +||+||
T Consensus 345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG 421 (546)
T PRK08314 345 QTHSNPPDRP-KLQCLGIPTFGVDARVID-PET-LEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421 (546)
T ss_pred ceecCCCcCC-CCCccCcccCCeEEEEEe-CCC-CcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence 7665544332 347899999999999998 432 24556778999999999999999999999888772 3 499999
Q ss_pred ceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 499 Dlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|+++++|.+++.||.||+|++ +|.+|+|.+||++|.++|+|++
T Consensus 422 Dl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~ 466 (546)
T PRK08314 422 DLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQE 466 (546)
T ss_pred CEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchhe
Confidence 99999999999999999999997 7999999999999999999864
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=470.18 Aligned_cols=435 Identities=25% Similarity=0.380 Sum_probs=362.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+++.++.++|+..++.+|+++|+++. + +++||.||++++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 45788999999999999999999864 3 58999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|+++..+.+++..+++.++++++++++.......... ........++........ .......
T Consensus 73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence 999999999999999999999999999999999999987665443322 122333344333322110 0011234
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
+|+++...... ........++++++++|||||||.||+|.++|.++...+......+ .+.+++++++..|++|.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 219 (513)
T PRK07656 146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV 219 (513)
T ss_pred cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence 56666644322 1233345778999999999999999999999999998887766666 78899999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 279 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+......
T Consensus 220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------- 277 (513)
T PRK07656 220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA---------------------- 277 (513)
T ss_pred HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence 99876 5668999999988765 89999999999999999999999998865322110
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-ceEEeeccccccCceeeccCCCccc-
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM- 434 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~- 434 (544)
.+ .+++|.+++||+++++++.++|++.++. .+++.||+||+++++..+.......
T Consensus 278 ---------------~~--------~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 334 (513)
T PRK07656 278 ---------------ED--------LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334 (513)
T ss_pred ---------------CC--------ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence 01 1389999999999999999999999988 8999999999998887776544322
Q ss_pred -cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-CCccccCceEEEccCCcEEEE
Q 009090 435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 435 -~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~g~l~~~ 512 (544)
.+++|.|.+++++++++ +++ .+++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++++|.+++.
T Consensus 335 ~~~~vG~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~ 411 (513)
T PRK07656 335 VAGTIGTAIAGVENKIVN-ELG--EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV 411 (513)
T ss_pred cCCCccccCCCcEEEEEC-CCC--CCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence 57899999999999998 544 4556778999999999999999999998888774 899999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.+|+|++ +|.+++|.+||++|.++|+|.+
T Consensus 412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~ 442 (513)
T PRK07656 412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAE 442 (513)
T ss_pred ecccceEEe-CCEEeCHHHHHHHHHhCCCeeE
Confidence 999999997 8999999999999999999864
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-56 Score=472.34 Aligned_cols=442 Identities=22% Similarity=0.311 Sum_probs=346.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
....|+.++|++.++++|+++|+++. + +.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++
T Consensus 21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~ 91 (562)
T PRK05677 21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA 91 (562)
T ss_pred CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence 34468999999999999999999853 3 589999999999999999997 5999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCc--hHHHHHH-----
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMA----- 190 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----- 190 (544)
+|||+++|++++|++|..+.+++.++++.++++++|++......+.+.... ...+.++..+... +......
T Consensus 92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (562)
T PRK05677 92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVV 169 (562)
T ss_pred HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccch
Confidence 999999999999999999999999999999999999987665433222211 1222222221100 0000000
Q ss_pred --------hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCC
Q 009090 191 --------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262 (544)
Q Consensus 191 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~ 262 (544)
.........+.+.+..............++++++++|||||||.||+|.++|+++...+......+. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~ 246 (562)
T PRK05677 170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SN 246 (562)
T ss_pred hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cC
Confidence 0000112334444433322222233456789999999999999999999999999877655443321 12
Q ss_pred CC-CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhc
Q 009090 263 MT-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (544)
Q Consensus 263 ~~-~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (544)
.. ..+.+++.+|++|.+++.. ++..+..|++.++.+. ++..+++.++++++|.++++|.++..+.....
T Consensus 247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------- 319 (562)
T PRK05677 247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------- 319 (562)
T ss_pred CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc-------
Confidence 23 3478899999999999865 5556778887776653 88899999999999999999999987754210
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccc
Q 009090 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~t 418 (544)
....++ +++|.+++||+++++++.+.|++.+++++++.||+|
T Consensus 320 ------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t 361 (562)
T PRK05677 320 ------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMT 361 (562)
T ss_pred ------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcc
Confidence 000111 279999999999999999999999999999999999
Q ss_pred cccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCcccc
Q 009090 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497 (544)
Q Consensus 419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~T 497 (544)
|++.++....... ...+++|.|.+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|
T Consensus 362 E~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T 437 (562)
T PRK05677 362 ETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDG--NELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT 437 (562)
T ss_pred ccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCC--CCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccc
Confidence 9988776654432 2347899999999999998 543 456778999999999999999999999999888 5899999
Q ss_pred CceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 498 GDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|++|++|.+++.||.+|+|++ +|.+|+|.+||++|.+||+|+|
T Consensus 438 GDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~ 483 (562)
T PRK05677 438 GDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQ 483 (562)
T ss_pred cceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccE
Confidence 999999999999999999999997 7999999999999999999874
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-56 Score=469.33 Aligned_cols=433 Identities=23% Similarity=0.268 Sum_probs=348.5
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++.+|+++|++.. +...+..+.+||.||++++.++|.+|++.|+++||+|+++++|+.+++++++|
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 97 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA 97 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 358999999999999999999864 33333457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|++|.++.+++.++++.++++++++++.... ...............++..+...
T Consensus 98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (538)
T TIGR03208 98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG------------- 164 (538)
T ss_pred HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------
Confidence 9999999999999999999999999999999999875421 00000111122233444443211
Q ss_pred eeeHHHHHhcccccc-------cccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEE
Q 009090 197 PYSWDEFLHLGKVNE-------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (544)
...++.++....... .......++++++++|||||||.||+|.++|+++...+......+ .+..+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~ 239 (538)
T TIGR03208 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVI 239 (538)
T ss_pred CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeE
Confidence 112333222110000 111234678999999999999999999999999998887766655 67889999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 270 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
++.+|++|..++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.........
T Consensus 240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~------------ 307 (538)
T TIGR03208 240 LMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGA------------ 307 (538)
T ss_pred EEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCC------------
Confidence 99999999988765 5667999999988776 899999999999999999999999887643221100
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeec
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 427 (544)
..+++|.+++||+++++++.+++.+.+++++++.||+||++.+++..
T Consensus 308 ---------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 354 (538)
T TIGR03208 308 ---------------------------------PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTE 354 (538)
T ss_pred ---------------------------------CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccC
Confidence 11389999999999999999999998899999999999998876655
Q ss_pred cCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC
Q 009090 428 FPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 506 (544)
Q Consensus 428 ~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~ 506 (544)
.... .....++|+|.+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|++
T Consensus 355 ~~~~~~~~~~~~G~~~~g~~v~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~ 430 (538)
T TIGR03208 355 PDDALEKASTTDGRPLPGVEVKVID-ANG--AKLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAE 430 (538)
T ss_pred cccchhhccCcccccCCCCEEEEEC-CCC--CCCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCC
Confidence 4332 12235789999999999998 544 3456778999999999999999999987653 36899999999999999
Q ss_pred CcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 507 g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+
T Consensus 431 g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~ 467 (538)
T TIGR03208 431 GYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQ 467 (538)
T ss_pred CcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceee
Confidence 999999999999996 8999999999999999999874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=474.83 Aligned_cols=443 Identities=27% Similarity=0.389 Sum_probs=354.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++++++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 458999999999999999999864 3 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCch---HHH----------
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA---EQK---------- 187 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------- 187 (544)
|+++|++++|++|.++.+++.++++.++++++|+++.....+.+.... .....++..+.... ...
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence 999999999999999999999999999999999988765544332211 11222322221100 000
Q ss_pred ----HHHhhCCceeeeHHHHHhccccc---ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhccc
Q 009090 188 ----EMAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE 260 (544)
Q Consensus 188 ----~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~ 260 (544)
...........+|+++....... .........+++++++|||||||.||+|.+||+++...+......+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~--- 256 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVP--- 256 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhcc---
Confidence 00000011234566665432111 01223356789999999999999999999999999877664433220
Q ss_pred CCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhc
Q 009090 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (544)
Q Consensus 261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (544)
.....++++++..|++|.+|+.. ...++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+......
T Consensus 257 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---- 332 (573)
T PRK05605 257 GLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG---- 332 (573)
T ss_pred ccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence 01234789999999999999876 4457889999988876 99999999999999999999999998875322110
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccc
Q 009090 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~t 418 (544)
.++ +++|.+++||+++++++.+.+++.++..+++.||+|
T Consensus 333 ---------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T 371 (573)
T PRK05605 333 ---------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT 371 (573)
T ss_pred ---------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence 111 279999999999999999999998899999999999
Q ss_pred cccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccC
Q 009090 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (544)
Q Consensus 419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TG 498 (544)
|+++++...........+++|.+.+++.++|++ +++...+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus 372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG 450 (573)
T PRK05605 372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG 450 (573)
T ss_pred hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence 999887766544444457899999999999999 5442356677889999999999999999999999999988999999
Q ss_pred ceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 499 Dlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|+++++|++++.||.+|++++ +|++|+|.+||++|..|+.|.+
T Consensus 451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~ 495 (573)
T PRK05605 451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVED 495 (573)
T ss_pred CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccce
Confidence 99999999999999999999996 8999999999999999999874
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=468.33 Aligned_cols=450 Identities=27% Similarity=0.348 Sum_probs=358.5
Q ss_pred CcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 009090 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (544)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~ 99 (544)
+++-+|++-.....+ ....++.+++..+++++|+++|+++. + ++ +++||.||.++++++|+.|.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~--~~--~~~ty~el~~~~~~la~~L~~~g~~ 73 (537)
T PLN02246 5 SEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---A--TG--RVYTYADVELLSRRVAAGLHKLGIR 73 (537)
T ss_pred cceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---C--CC--ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence 344566766544322 34568999999999999999998753 2 12 5899999999999999999999999
Q ss_pred CCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEe
Q 009090 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (544)
Q Consensus 100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (544)
+||+|+++++|+.+++++++||+++|++++|++|.++.+++..+++.++++++|+++.....+...... .. ..++.+
T Consensus 74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~~ 150 (537)
T PLN02246 74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVTI 150 (537)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEEe
Confidence 999999999999999999999999999999999999999999999999999999998776654332211 11 133333
Q ss_pred cCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcc
Q 009090 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (544)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 259 (544)
+.... ....+.++.... ....+.....++++++++|||||||.||+|.++|+++...+....... ..
T Consensus 151 ~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~ 217 (537)
T PLN02246 151 DDPPE-----------GCLHFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NP 217 (537)
T ss_pred CCCCC-----------CceeHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-cc
Confidence 33211 122344443321 112223334678999999999999999999999999988776543211 01
Q ss_pred cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhh
Q 009090 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (544)
Q Consensus 260 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~ 337 (544)
...+..+|+++...|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..|.+.....
T Consensus 218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---- 293 (537)
T PLN02246 218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE---- 293 (537)
T ss_pred ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc----
Confidence 125788999999999999999865 5567899999999987 8999999999999999999999988875421100
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeec
Q 009090 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (544)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG 416 (544)
..+ ++++|.+++||+++++++.+++++.+ +..+++.||
T Consensus 294 ---------------------------------~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG 332 (537)
T PLN02246 294 ---------------------------------KYD--------LSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG 332 (537)
T ss_pred ---------------------------------ccC--------ccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence 001 13899999999999999999999988 678999999
Q ss_pred cccccCceeeccC---C-CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-c
Q 009090 417 LTETCGPTTVCFP---D-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (544)
Q Consensus 417 ~tE~~~~~~~~~~---~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~ 491 (544)
+||++.+++.... . .....+++|+|.+++++++++ ++. ..+++.|+.|||+++|+.++.||+++++.+...+ .
T Consensus 333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~ 410 (537)
T PLN02246 333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVD-PET-GASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK 410 (537)
T ss_pred ccccCcccccccccCCCCccccCCccccccCCcEEEEec-CCC-CCcCCCCCceEEEEECCchhccccCCchhhhhcccC
Confidence 9999876554321 1 122346899999999999998 332 3566778899999999999999999999998888 6
Q ss_pred CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 492 ~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.+||+|.|
T Consensus 411 ~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~ 462 (537)
T PLN02246 411 DGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD 462 (537)
T ss_pred CCCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeE
Confidence 899999999999999999999999999997 7999999999999999999864
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=467.01 Aligned_cols=437 Identities=23% Similarity=0.296 Sum_probs=350.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
.+++.++|++.++++|+++|+++. + .++.++++||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++|
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999875 3 345568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++++++..+.+++.++++.++++.++++.+....+.+.........+.++....... ......++
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 153 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSF 153 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCH
Confidence 9999999999999999999999999999999999987765543332222223334444332111 01123344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+++...............++++++++|||||||.||+|.++|+++.......... ..+..++++++.+|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~ 228 (517)
T PRK08008 154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQ-----CALRDDDVYLTVMPAFHIDC 228 (517)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhh-----cCCCCCCeEEEecCcHHHHH
Confidence 4443322111112233466899999999999999999999999998654332222 14678999999999999876
Q ss_pred HHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
... .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+........
T Consensus 229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------ 284 (517)
T PRK08008 229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------ 284 (517)
T ss_pred HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence 664 5567889999999876 89999999999999999999999887653211000
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCcc
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~ 438 (544)
. ..+++|.+.++ .++++++.++|.+.++.++++.||+||++..+............++
T Consensus 285 -------------~--------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 342 (517)
T PRK08008 285 -------------D--------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI 342 (517)
T ss_pred -------------c--------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence 0 01257777665 4789999999999899999999999999876665544444455789
Q ss_pred CcCccCceEEEeecCCCCCCCCCCCCCCeEEEec---CCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEee
Q 009090 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR 514 (544)
Q Consensus 439 G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~---~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR 514 (544)
|.|.+++++++++ +++ .+++.|+.|||+++| +.++.||+++++.+.+.| .+|||+|||+|++|+||++++.||
T Consensus 343 G~~~~g~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR 419 (517)
T PRK08008 343 GRPGFCYEAEIRD-DHN--RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR 419 (517)
T ss_pred ccCCCCcEEEEEC-CCC--CCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence 9999999999998 544 455677899999998 689999999999999888 689999999999999999999999
Q ss_pred ccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 515 KKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 515 ~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|+|++ +|++++|.+||++|.+||+|.|
T Consensus 420 ~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~ 448 (517)
T PRK08008 420 RCNMIKR-GGENVSCVELENIIATHPKIQD 448 (517)
T ss_pred ccceEEe-CCEEECHHHHHHHHHhCCceee
Confidence 9999997 7999999999999999999875
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=469.10 Aligned_cols=424 Identities=20% Similarity=0.197 Sum_probs=344.2
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|.++++++|+++|++.. + +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 112 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDE----L-----GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLA 112 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHH
Confidence 357999999999999999999853 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++++.++++++|++.+....+..... .......++...+.. ....+
T Consensus 113 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~ 179 (537)
T PRK13382 113 ANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTV 179 (537)
T ss_pred HHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccH
Confidence 99999999999999999999999999999999999776554422211 111222223222211 01234
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+.+...... . .....+++.++++|||||||.||+|.++|.++..........+ .+..+++++...|++|.++
T Consensus 180 ~~~~~~~~~-~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g 251 (537)
T PRK13382 180 EVLIAAHAG-Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWG 251 (537)
T ss_pred HHHhhccCc-C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhH
Confidence 444332211 1 1123467889999999999999999999998887776655544 5678899999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcc
Q 009090 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (544)
+...+.++..|+++++... ++..+++.++++++|++.++|.++..+++.....
T Consensus 252 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------------- 305 (537)
T PRK13382 252 FSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV-------------------------- 305 (537)
T ss_pred HHHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh--------------------------
Confidence 8777788899999888765 8999999999999999999999999876421110
Q ss_pred cCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccC
Q 009090 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439 (544)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G 439 (544)
.+..+ ++++|.+++||+++++++.+.|.+.++..+++.||+||++.+++.+........+++|
T Consensus 306 ---------~~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG 368 (537)
T PRK13382 306 ---------RNRYS--------GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAG 368 (537)
T ss_pred ---------cccCC--------ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCcc
Confidence 00011 1379999999999999999999999998999999999999877655433333457899
Q ss_pred cCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecccee
Q 009090 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (544)
Q Consensus 440 ~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i 519 (544)
+|.++++++++| +++ .+++.|+.|||+++|+.++.||+ ++.+. .+.+|||+|||++++++||++++.||.||+|
T Consensus 369 ~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i 442 (537)
T PRK13382 369 RPAEGTEIRILD-QDF--REVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMI 442 (537)
T ss_pred ccCcCcEEEEEC-CCC--CCCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEecccccee
Confidence 999999999999 544 45567789999999999999998 44443 3568999999999999999999999999999
Q ss_pred ecCCCceechHhHHHHhhcCCCccC
Q 009090 520 KISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 520 ~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++ +|++|+|.+||+.|.+||+|++
T Consensus 443 k~-~G~~v~~~eIE~~l~~~~~V~~ 466 (537)
T PRK13382 443 VS-GGENVYPIEVEKTLATHPDVAE 466 (537)
T ss_pred EE-CCEEECHHHHHHHHHhCCCEee
Confidence 96 8999999999999999999864
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-56 Score=465.87 Aligned_cols=416 Identities=23% Similarity=0.280 Sum_probs=344.0
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..+.+.|+++|+.+|+++|+++. + +.+||.||+++++++|++|++ .|+++||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46789999999999999999853 3 689999999999999999985 6999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++..+.+++..+++.+++++++++++....+...... .....++.+. ++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence 999999999999999999999999999999999988765544322211 1112222222 12
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+++.... ........++++++++|||||||.||+|.++|.++..........+ .+..+|+++..+|++|..|
T Consensus 133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 204 (496)
T PRK06839 133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGG 204 (496)
T ss_pred HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhh
Confidence 2222111 1112234568899999999999999999999999876655544444 6788999999999999999
Q ss_pred HHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.++......
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 259 (496)
T PRK06839 205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------- 259 (496)
T ss_pred HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence 875 4567899999988766 9999999999999999999999999886532110
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC-CccccCc
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGT 437 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~ 437 (544)
.. ..+++|.+++||+++++++.+.+++. |+++.+.||+||++..++..... .....++
T Consensus 260 ------------~~--------~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 318 (496)
T PRK06839 260 ------------TT--------NLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS 318 (496)
T ss_pred ------------cC--------CCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence 01 11389999999999999999999987 99999999999999765544332 2344578
Q ss_pred cCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccc
Q 009090 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517 (544)
Q Consensus 438 ~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d 517 (544)
+|+|+++++++|++ +++.. ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|+++++|++++.||.+|
T Consensus 319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d 395 (496)
T PRK06839 319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKE 395 (496)
T ss_pred CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccc
Confidence 99999999999998 55543 6778999999999999999999999998888999999999999999999999999999
Q ss_pred eeecCCCceechHhHHHHhhcCCCccC
Q 009090 518 LIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 518 ~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+. +|.+|+|.+||++|.++|+|.|
T Consensus 396 ~i~~-~G~~v~p~~iE~~l~~~~~v~~ 421 (496)
T PRK06839 396 MIIS-GGENIYPLEVEQVINKLSDVYE 421 (496)
T ss_pred eEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 9996 8999999999999999999865
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=465.92 Aligned_cols=432 Identities=22% Similarity=0.275 Sum_probs=350.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHH
Q 009090 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (544)
Q Consensus 36 ~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~ 115 (544)
..|...+++.++|+++++++|+++|++.. + +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus 15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~ 85 (542)
T PRK06155 15 PLPPSERTLPAMLARQAERYPDRPLLVFG----G-----TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL 85 (542)
T ss_pred cCCccccCHHHHHHHHHHHCCCCeEEEeC----C-----ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence 34567888999999999999999999864 2 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 116 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
+++|||+++|++++|+++.++.+++.++++.+++++++++.+....+....... .....++.++..... .
T Consensus 86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~--- 155 (542)
T PRK06155 86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASV------S--- 155 (542)
T ss_pred HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCcccc------c---
Confidence 999999999999999999999999999999999999999987766553332211 223344444432110 0
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
....|..................++++++++|||||||.||+|.++|.++..........+ .+.+++++++..|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl 230 (542)
T PRK06155 156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL 230 (542)
T ss_pred cccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence 0001111100000111122334678999999999999999999999999988776655555 68899999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 276 ~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
+|..++...+.++..|+++++.+. ++..++..++++++|++.++|+++..|.+......
T Consensus 231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------- 290 (542)
T PRK06155 231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES-------------------- 290 (542)
T ss_pred HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence 999998877888999999998876 89999999999999999999998887754321100
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 434 (544)
...+++|.++.+| +++.+.+.+++.+++++++.||+||++.++..... ...
T Consensus 291 -------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~ 341 (542)
T PRK06155 291 -------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR 341 (542)
T ss_pred -------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence 0113788877666 57889999999999999999999999887665432 234
Q ss_pred cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC---CccccccCChhhhhhcccCCccccCceEEEccCCcEEE
Q 009090 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~---~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~ 511 (544)
.+++|.+.++++++|++ +++ .+++.|+.|||+++|+ .++.||+++++.+.+.|.++||+|||+|++++||++++
T Consensus 342 ~~~vG~~~~~~~~~i~d-~~~--~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i 418 (542)
T PRK06155 342 PGSMGRLAPGFEARVVD-EHD--QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF 418 (542)
T ss_pred CCCcCccCCCceEEEEC-CCC--CCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence 47899999999999998 443 4566778999999998 68999999999999889999999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.+|+|++ +|.+++|.+||++|.+||+|++
T Consensus 419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~ 450 (542)
T PRK06155 419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAA 450 (542)
T ss_pred EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeE
Confidence 9999999996 8999999999999999999875
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=466.98 Aligned_cols=448 Identities=23% Similarity=0.304 Sum_probs=355.5
Q ss_pred CcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCC
Q 009090 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (544)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~ 99 (544)
.++.+||+.+..... +...|+.++|.++++++|+++|+++. .+ + +.+||.||.+++.++|..|.+.|++
T Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~~l~~~~~~la~~L~~~g~~ 78 (546)
T PLN02330 10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VT--G--KAVTYGEVVRDTRRFAKALRSLGLR 78 (546)
T ss_pred ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CC--C--CcccHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888655422 34688999999999999999999753 21 2 5799999999999999999999999
Q ss_pred CCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEe
Q 009090 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (544)
Q Consensus 100 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (544)
+||+|+++++|+.+++++++||+++|++++|+++..+.+++.++++.++++++|+++.....+.... .. ++.+
T Consensus 79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~~-~i~~ 151 (546)
T PLN02330 79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------LP-VIVL 151 (546)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------Cc-EEEe
Confidence 9999999999999999999999999999999999999999999999999999999988766553221 11 2222
Q ss_pred cCCchHHHHHHhhCCceeeeHHHHHhccccc--ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhh
Q 009090 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257 (544)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~ 257 (544)
+... ......|.+++...... ........++++++++|||||||.||+|.++|.++...+......+
T Consensus 152 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~- 220 (546)
T PLN02330 152 GEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV- 220 (546)
T ss_pred cCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence 2211 01233466665433221 1122334578899999999999999999999999987664321111
Q ss_pred cccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHH
Q 009090 258 QFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (544)
Q Consensus 258 ~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 335 (544)
.......++.+.+.|++|.+++.. ++.++..|+++++.+. ++..++..++++++|.+.++|.++..+++...
T Consensus 221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---- 294 (546)
T PLN02330 221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI---- 294 (546)
T ss_pred --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----
Confidence 112234578999999999999874 5667899999998876 99999999999999999999999988764211
Q ss_pred hhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEe
Q 009090 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQG 414 (544)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~ 414 (544)
...+++.. .++|.++++|+++++++.++|.+.+ ++++++.
T Consensus 295 ---------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~ 335 (546)
T PLN02330 295 ---------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA 335 (546)
T ss_pred ---------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence 00111110 1579999999999999999999998 8999999
Q ss_pred eccccccCceeeccCCC----ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc
Q 009090 415 YGLTETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490 (544)
Q Consensus 415 YG~tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~ 490 (544)
||+||++.+........ .....++|.|++++++++++ ++.+ .+++.|+.|||+++|+.++.||+++++.+.+.+
T Consensus 336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 413 (546)
T PLN02330 336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTI 413 (546)
T ss_pred ccccccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhc
Confidence 99999986654332111 12336899999999999998 3333 556778899999999999999999999888777
Q ss_pred -cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 491 -~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.|
T Consensus 414 ~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~ 467 (546)
T PLN02330 414 DEDGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVED 467 (546)
T ss_pred cCCCceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchhe
Confidence 6899999999999999999999999999997 7999999999999999999875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=459.88 Aligned_cols=408 Identities=19% Similarity=0.216 Sum_probs=340.2
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
++.+.|+++++++|+++|+++. + .++||.||.++++++|.+|.+.|. +|++|+++++|++++++++|||+
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~ 71 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKEN----D-----RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAA 71 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEecC----C-----cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6789999999999999999754 3 589999999999999999999885 89999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (544)
++|++++|+++.++.+++.++++.++++++|++......+... ...++..+. +.+
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~~ 126 (487)
T PRK07638 72 MAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WKR 126 (487)
T ss_pred HcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hhh
Confidence 9999999999999999999999999999999987654433210 011222211 111
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH
Q 009090 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (544)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 282 (544)
..... ...........+++++++|||||||.||+|.++|++++..+......+ .+.++|+++...|++|..++.
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~ 200 (487)
T PRK07638 127 MIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY 200 (487)
T ss_pred hhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence 11111 011111222456789999999999999999999999998887766555 678899999999999988777
Q ss_pred HHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccC
Q 009090 283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361 (544)
Q Consensus 283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (544)
..+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------ 250 (487)
T PRK07638 201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR------------------------------ 250 (487)
T ss_pred HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC------------------------------
Confidence 77778999999998876 89999999999999999999999988764200
Q ss_pred cCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCccccCccCc
Q 009090 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (544)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (544)
...+.+.++++|+++++++.+++++.+ ++.+++.||+||++.++............++|+
T Consensus 251 -------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 311 (487)
T PRK07638 251 -------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGR 311 (487)
T ss_pred -------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCc
Confidence 002456678899999999999999998 688999999999998776655443445578999
Q ss_pred CccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceee
Q 009090 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (544)
Q Consensus 441 ~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~ 520 (544)
|+++++++|++ +++ .+++.|+.|||+++|+.++.||++++..+.+.+.+|||+|||+|++|++|++++.||.+|+|+
T Consensus 312 ~~~~~~~~i~d-~~g--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~ 388 (487)
T PRK07638 312 PFHNVQVRICN-EAG--EEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMIL 388 (487)
T ss_pred ccCCcEEEEEC-CCC--CCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEE
Confidence 99999999998 544 456678999999999999999999998888777899999999999999999999999999999
Q ss_pred cCCCceechHhHHHHhhcCCCccC
Q 009090 521 ISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 521 ~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+ +|.+|+|.+||++|.+||+|+|
T Consensus 389 ~-~G~~v~~~eiE~~l~~~~~v~~ 411 (487)
T PRK07638 389 F-GGINIFPEEIESVLHEHPAVDE 411 (487)
T ss_pred e-CCEEECHHHHHHHHHhCCCeee
Confidence 7 8999999999999999999875
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=464.67 Aligned_cols=437 Identities=29% Similarity=0.398 Sum_probs=365.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|.++++.+|+++|+.+. + +.+||.||+++++++|+.|.+.|+++|++|+++++|+.++++++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~ 73 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY 73 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35678999999999999999999865 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|+++.++.+++..+++.+++++++++.+....+.+... .....+.++..++.... .......
T Consensus 74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~ 146 (521)
T PRK06187 74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG 146 (521)
T ss_pred HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence 9999999999999999999999999999999999999887666544332 22334455554443210 1112344
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
++.++...... .........+++++++|||||||.||+|.+||+++..........+ ++..+|+++...|++|.
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~ 220 (521)
T PRK06187 147 EYEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHV 220 (521)
T ss_pred cHHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHH
Confidence 56666543321 2223345678899999999999999999999999998887766655 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
+++...+.++..|+++++++. ++..+++.++++++|.++++|+++..+.+.....
T Consensus 221 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------ 276 (521)
T PRK06187 221 HAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------ 276 (521)
T ss_pred hhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC------------------------
Confidence 998877779999999999876 8999999999999999999999999886543221
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCc-----
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM----- 432 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~----- 432 (544)
..++ +++|.+++||+++++++.+++.+.+++++++.||+||+++++........
T Consensus 277 -------------~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 335 (521)
T PRK06187 277 -------------FVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQW 335 (521)
T ss_pred -------------ccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccccc
Confidence 0111 38999999999999999999999999999999999999887666544333
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEE
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~ 512 (544)
....++|.|.++++++|++ +++...+...|+.|||+++|+.+..||+++++.+.+.|.++||+|||+|+++++|.+++.
T Consensus 336 ~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~ 414 (521)
T PRK06187 336 TKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYIT 414 (521)
T ss_pred ccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEe
Confidence 2457899999999999999 655544443388999999999999999999999999999999999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.+|++++ +|.+++|.+||++|.++++|++
T Consensus 415 GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~ 445 (521)
T PRK06187 415 DRIKDVIIS-GGENIYPRELEDALYGHPAVAE 445 (521)
T ss_pred ecccceEEc-CCeEECHHHHHHHHHhCCCceE
Confidence 999999997 7999999999999999999864
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=464.51 Aligned_cols=428 Identities=19% Similarity=0.202 Sum_probs=343.1
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+.+++++++|
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 557999999999999999999753 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++++++..+.+++.++++.+++++++++..... ..........+....++.......
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 160 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------ 160 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence 9999999999999999999999999999999999865321 111111111122233333221100
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
.......+... ..........++++++++|||||||.||+|.+||.++...+......+ .+..+|++++.+|++
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 161 EAELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred cchhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 00111111111 111122345678999999999999999999999999998887766655 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.++..|+++++.+. ++..++..++++++|++.++|.++..+++...+..
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 295 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR------------------- 295 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence 9999764 5667889999988765 88999999999999999999999988765322110
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
. ..+++|.+++||+++++++.+++.+.++.++++.||+||++............
T Consensus 296 ------------------~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 349 (527)
T TIGR02275 296 ------------------Y--------DLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI 349 (527)
T ss_pred ------------------C--------CccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence 0 11389999999999999999999999999999999999965433222111222
Q ss_pred ccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
..+++|+|+ ++.++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|++++
T Consensus 350 ~~~~~G~~~~~~~~v~i~d-~~g--~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~ 426 (527)
T TIGR02275 350 IFTTQGRPMSPDDEVRVVD-DHG--NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV 426 (527)
T ss_pred ccccCCCCCCCCceEEEEC-CCC--CCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence 336889998 488999998 544 355677899999999999999999999998888 689999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.+|+|++ +|++++|.+||++|.+||+|++
T Consensus 427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~ 458 (527)
T TIGR02275 427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHD 458 (527)
T ss_pred Eecccceeec-CCEEECHHHHHHHHHhCCCceE
Confidence 9999999996 8999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=468.29 Aligned_cols=437 Identities=22% Similarity=0.288 Sum_probs=331.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...|+.++|..+++.+|+++|+.+. + .++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|
T Consensus 12 ~~~~~~~~l~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~l 82 (579)
T PLN03102 12 VPLTPITFLKRASECYPNRTSIIYG----K-----TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHF 82 (579)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEC----C-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3467999999999999999999764 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccccc----ccccEEEEecCCchHHHHHHhhCCc
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
||+++|++++|+++.++.+++.++|+.++++++|++++....+........ .....++.++...... ....
T Consensus 83 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 157 (579)
T PLN03102 83 AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSS 157 (579)
T ss_pred HHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcc
Confidence 999999999999999999999999999999999998876654433221100 0011233333211000 0001
Q ss_pred eeeeHHHHHhcccccccc----cCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEE
Q 009090 196 KPYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (544)
...+++++.......... .....++++++++|||||||.||+|.++|.++........... .+...+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~ 232 (579)
T PLN03102 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLW 232 (579)
T ss_pred cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEe
Confidence 233455555432211111 1123568999999999999999999999999754443322221 4567788999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009090 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (544)
Q Consensus 272 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
.+|++|..++...+.++..|+++++.+. ++..+++.++++++|++.++|.++..|.+......
T Consensus 233 ~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 296 (579)
T PLN03102 233 TLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL---------------- 296 (579)
T ss_pred cCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------
Confidence 9999999998777778888888888765 88899999999999999999999998865321100
Q ss_pred HHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC
Q 009090 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
. ..++++.+++||+++++.+.++++. +|..+++.||+||+++.++.....
T Consensus 297 ---------------------~--------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~ 346 (579)
T PLN03102 297 ---------------------S--------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQ 346 (579)
T ss_pred ---------------------C--------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccc
Confidence 0 0125788999999999999999876 599999999999998654432111
Q ss_pred C-------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCcccc
Q 009090 431 E-------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT 497 (544)
Q Consensus 431 ~-------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~T 497 (544)
. ....+..+.+.+++ ++.+.+.....+.+.++.|||+++|+.++.||+++++.+.+.|.+|||+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~T 424 (579)
T PLN03102 347 DEWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNT 424 (579)
T ss_pred cccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceec
Confidence 0 00112333344444 44442222223332346799999999999999999999999999999999
Q ss_pred CceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 498 GDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|++|+||++++.||.+|+|++ +|++|+|.+||++|.+||.|.+
T Consensus 425 GDlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 470 (579)
T PLN03102 425 GDVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLE 470 (579)
T ss_pred CceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999999999999999999997 8999999999999999999875
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=475.29 Aligned_cols=440 Identities=21% Similarity=0.218 Sum_probs=336.5
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..|+.+.+..+ .+|+++|+++. +.++..+++||.||.+++.++|+.|++.|+++||+|+++++|++++++++||
T Consensus 85 ~~n~~~~~~~~--~~~~~~Al~~~----~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA 158 (655)
T PRK03584 85 RLNYAENLLRH--RRDDRPAIIFR----GEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLA 158 (655)
T ss_pred EeeHHHHhhcc--CCCCCeEEEEE----CCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34555555432 58999999886 3455668999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------HhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
|+++|++++|+++.++.+++.++|+.++++++|+++.... .+.... ........++.+...... ...
T Consensus 159 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~~~ 234 (655)
T PRK03584 159 TASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPA---AAA 234 (655)
T ss_pred HHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCc---ccc
Confidence 9999999999999999999999999999999999875321 111111 112233344444322100 000
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH-HhhhhhhhhcccCCCCCCcEEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l 270 (544)
........|+++................+++++|+|||||||.||||+++|.+++.. .......+ .+.++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 309 (655)
T PRK03584 235 AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFF 309 (655)
T ss_pred cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 011123456666542222222233456789999999999999999999999987543 44433333 678899999
Q ss_pred EecChHHHHHHHHHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 271 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
+..++.|+... ..+.++..|+++++..+ ++..+++.++++++|++..+|+++..+.+...
T Consensus 310 ~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------- 374 (655)
T PRK03584 310 WYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL-------------- 374 (655)
T ss_pred EcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC--------------
Confidence 99999887543 35568999999999753 68999999999999999999999987753100
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc--CCceEEeeccccccCc
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGP 423 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~YG~tE~~~~ 423 (544)
.+ ....++ ++||.+++||+++++++.+++.+.+ ++.+.+.||+||+++.
T Consensus 375 --------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~ 425 (655)
T PRK03584 375 --------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSC 425 (655)
T ss_pred --------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcc
Confidence 00 011122 3899999999999999999999988 4789999999998654
Q ss_pred eeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhh--hcc---cCCccc
Q 009090 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGWFH 496 (544)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~--~v~~gy~~~~~~~~--~~~---~~g~~~ 496 (544)
.....+......+++|.|.+|++++|+| +++... .|+.|||+|+|| +++.||+++++.++ ..+ .+|||+
T Consensus 426 ~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~ 501 (655)
T PRK03584 426 FVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWR 501 (655)
T ss_pred cccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEee
Confidence 4433222233458899999999999999 554433 578999999995 78999999987543 222 268999
Q ss_pred cCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 502 TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~e 548 (655)
T PRK03584 502 HGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLD 548 (655)
T ss_pred cCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcce
Confidence 9999999999999999999999997 8999999999999999999975
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=466.16 Aligned_cols=436 Identities=24% Similarity=0.305 Sum_probs=341.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|+++++++|+++|+++. ++. +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 85 (534)
T PRK05852 13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL 85 (534)
T ss_pred hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence 45678999999999999999999864 321 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|+++.++.+++.++|+.++++++|++............ ......+.+...... .......
T Consensus 86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~ 156 (534)
T PRK05852 86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLSV 156 (534)
T ss_pred HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------ccccccc
Confidence 9999999999999999999999999999999999998653321111000 011111111110000 0000000
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.+..... . ...........++.++++|||||||.||+|.++|+++...+......+ .+..+|++++..|++|.
T Consensus 157 ~~~~~~~-~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~ 229 (534)
T PRK05852 157 HLDAATE-P-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHG 229 (534)
T ss_pred ccccccC-C-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchh
Confidence 0100000 0 000111112356789999999999999999999999998888776666 78899999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.++.. .+.++..|++++++.. ++..+++.++++++|.++++|.++..+.+......
T Consensus 230 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------- 289 (534)
T PRK05852 230 HGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP-------------------- 289 (534)
T ss_pred HHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc--------------------
Confidence 99876 5567888888887543 78899999999999999999999988865322110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC---
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--- 431 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~--- 431 (544)
.....+++|.++++|+++++++.+++.+.++.++++.||+||++..++......
T Consensus 290 -----------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 346 (534)
T PRK05852 290 -----------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ 346 (534)
T ss_pred -----------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccccc
Confidence 000114899999999999999999999999999999999999987665433211
Q ss_pred -ccccCccCcC--ccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCc
Q 009090 432 -MCMVGTAGPV--SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508 (544)
Q Consensus 432 -~~~~~~~G~~--~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~ 508 (544)
.....+.|.+ .+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus 347 ~~~~~~~~g~~g~~~g~~~~i~d-~~g--~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~ 423 (534)
T PRK05852 347 TENPVVSTGLVGRSTGAQIRIVG-SDG--LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGD 423 (534)
T ss_pred ccCcccccccCCCCCCCeEEEEC-CCC--CCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCc
Confidence 1111234444 6999999998 544 455678899999999999999999999999999999999999999999999
Q ss_pred EEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 509 l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++.||.+|+|+. +|.+++|.+||++|.+||+|+|
T Consensus 424 l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~ 458 (534)
T PRK05852 424 LSIRGRIKELINR-GGEKISPERVEGVLASHPNVME 458 (534)
T ss_pred EEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 9999999999996 8999999999999999999875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-55 Score=462.15 Aligned_cols=437 Identities=22% Similarity=0.320 Sum_probs=346.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++++|++.++.+. .++.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la 83 (539)
T PRK07008 9 PLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG 83 (539)
T ss_pred CCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 457999999999999998887643 123357899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|..+.+++..+++.+++++++++.+....+.+... .......++...+.... ........++
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 157 (539)
T PRK07008 84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHL-----PAGSTPLLCY 157 (539)
T ss_pred HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCcc-----ccCCcccccH
Confidence 99999999999999999999999999999999999876554433221 12233344433322110 0011234566
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHh--hhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
+++...... ........++++++++|||||||.||+|.+||+++..... .+...+ ++..+|+++...|++|.
T Consensus 158 ~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (539)
T PRK07008 158 ETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHV 231 (539)
T ss_pred HHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHh
Confidence 666543321 1122344678899999999999999999999999864332 222222 57789999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
.++...+.++..|+++++.+. ++..+.+.++++++|++.++|.++..+++.....
T Consensus 232 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~----------------------- 288 (539)
T PRK07008 232 NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA----------------------- 288 (539)
T ss_pred hhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc-----------------------
Confidence 877666777899999998754 8899999999999999999999998876532211
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~----- 431 (544)
..++ +++|.++++|+++++++.+++++.+++++++.||+||++..+..+....
T Consensus 289 --------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~ 346 (539)
T PRK07008 289 --------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQL 346 (539)
T ss_pred --------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccC
Confidence 0111 3899999999999999999999999999999999999997655432111
Q ss_pred -----ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC
Q 009090 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN 506 (544)
Q Consensus 432 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~ 506 (544)
.....++|+|.|+++++|++ +++...+.+.++.|||+++|+.++.||++++. ..+.+|||+|||+|++|+|
T Consensus 347 ~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~d 422 (539)
T PRK07008 347 PLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDAD 422 (539)
T ss_pred CchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCC
Confidence 11235789999999999999 55555544444679999999999999999983 3456899999999999999
Q ss_pred CcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 507 g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++++.||.+|+|++ +|.+++|.+||++|..||+|+|
T Consensus 423 g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~ 459 (539)
T PRK07008 423 GFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAE 459 (539)
T ss_pred CcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeE
Confidence 999999999999996 8999999999999999999875
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=473.06 Aligned_cols=440 Identities=19% Similarity=0.189 Sum_probs=328.9
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..|+.+.+.. +.++++|+++. +.++..+++||.||.+++.++|+.|++.|+++||+|+++++|++++++++||
T Consensus 86 ~~n~~~~~~~---~~~~~~a~~~~----~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA 158 (652)
T TIGR01217 86 RLNYAENLLR---AAGTEPALLYV----DETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA 158 (652)
T ss_pred eeeHHHHHhc---cCCCCeEEEEE----CCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 3445554443 35789999886 3455568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh---------hHhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
|+++|++++|+++.++.+++.++|++++++++|+++... ..+.... ...+..+.++.+......... .
T Consensus 159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~--~ 235 (652)
T TIGR01217 159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRETE--A 235 (652)
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcccc--c
Confidence 999999999999999999999999999999999987542 2221111 122233444444321100000 0
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH-HHhhhhhhhhcccCCCCCCcEEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~-~~~~~~~~~~~~~~~~~~~d~~l 270 (544)
........|+++................+++++|+|||||||.||||+++|.+++. ........+ ++.++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 310 (652)
T TIGR01217 236 PKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLF 310 (652)
T ss_pred ccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEE
Confidence 00012345677654321112222344668999999999999999999999998654 333333333 678899999
Q ss_pred EecChHHHHHHHHHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 271 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
+..|+.|+... ..+.++..|++++++.+ ++..+++.++++++|++...|.++..+.+.-.
T Consensus 311 ~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------------- 375 (652)
T TIGR01217 311 YYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV-------------- 375 (652)
T ss_pred EeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC--------------
Confidence 99999997643 34478999999999863 67889999999999998777766655422100
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC--CceEEeeccccccCc
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGP 423 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~i~~~YG~tE~~~~ 423 (544)
.+ ....++ ++||.+++||+++++++.+++.+.++ ..+.+.||+||+++.
T Consensus 376 --------------------~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~ 426 (652)
T TIGR01217 376 --------------------HP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSC 426 (652)
T ss_pred --------------------Cc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhcc
Confidence 00 011222 38999999999999999999999885 457789999997543
Q ss_pred eeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC--CccccccCChhhhh--hc-c--cCCccc
Q 009090 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFH 496 (544)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~--~v~~gy~~~~~~~~--~~-~--~~g~~~ 496 (544)
.....+......+++|.|.+|+++++++ +++... .|+.|||+++|| +++.|||++++.++ +. | .+|||+
T Consensus 427 ~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~ 502 (652)
T TIGR01217 427 FAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR 502 (652)
T ss_pred ccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEE
Confidence 3322222233347899999999999998 555433 378999999996 68899999998654 22 2 268999
Q ss_pred cCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 503 tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~e 549 (652)
T TIGR01217 503 HGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRE 549 (652)
T ss_pred cCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcce
Confidence 9999999999999999999999996 8999999999999999999975
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=464.46 Aligned_cols=447 Identities=22% Similarity=0.309 Sum_probs=352.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
+...|+.++|++++..+|++.|+++. +. .++.+||.||.+++.++|++|.+ .|+++||+|+++++|+.+++++
T Consensus 7 ~~~~~~~~~l~~~a~~~~~~~a~~~~----~~--~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~ 80 (576)
T PRK05620 7 DVPLSLTRILEYGSTVHGDTTVTTWG----GA--EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEV 80 (576)
T ss_pred cCCCcHHHHHHHHHHhCCCceEEEEc----CC--ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence 44568999999999999999998753 21 24789999999999999999996 7999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
++||+++|++++|++|..+.+++.++++.++++++|+++.....+..... .......++..+.................
T Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T PRK05620 81 LFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKV 159 (576)
T ss_pred HHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccccc
Confidence 99999999999999999999999999999999999999877665533322 12333444444322111000001112234
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
.+|+++.+... .........++++++++|||||||.||+|.++|+++.......... ....+..++++++.+|++|
T Consensus 160 ~~~~~l~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h 235 (576)
T PRK05620 160 YSYEALLDGRS-TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTT---DSLAVTHGESFLCCVPIYH 235 (576)
T ss_pred ccHHHHhhcCC-CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhh---hhcCCCCCCeEEEeCChHH
Confidence 56777775432 2222334567899999999999999999999999986554432111 0125778999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+++...+.++..|+++++.+. ++..+.+.++++++|+++++|.++..++........
T Consensus 236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 295 (576)
T PRK05620 236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP-------------------- 295 (576)
T ss_pred hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc--------------------
Confidence 9998877888999999988764 899999999999999999999999887643211100
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC----
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
...++|.+++||+.+++.+.+.|++.+++++++.||+||++..+....+..
T Consensus 296 -------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 350 (576)
T PRK05620 296 -------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSG 350 (576)
T ss_pred -------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccc
Confidence 002799999999999999999999999999999999999998765543321
Q ss_pred ---ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhh----------------hhcc-c
Q 009090 432 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI-I 491 (544)
Q Consensus 432 ---~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~----------------~~~~-~ 491 (544)
.....++|++.+++++++++ + +...+.+.++.|||+++|+.++.||+++++.+ ...+ .
T Consensus 351 ~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~ 428 (576)
T PRK05620 351 EARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA 428 (576)
T ss_pred ccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccccc
Confidence 11224789999999999998 4 44344445678999999999999999999877 2223 4
Q ss_pred CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 492 ~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|||+|++++||.+++.||.+|+|+. +|.+++|.+||++|.+||.|+|
T Consensus 429 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~ 480 (576)
T PRK05620 429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVE 480 (576)
T ss_pred CCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceE
Confidence 789999999999999999999999999996 8999999999999999999874
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=463.36 Aligned_cols=444 Identities=28% Similarity=0.374 Sum_probs=354.6
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC
Q 009090 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (544)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n 110 (544)
.++-.-++....++.++|++.++++|+++|+++. ++. +.+||.||.++++++|..|.+.|+++||+|+++++|
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~ 77 (559)
T PRK08315 5 VRGPTDVPLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPN 77 (559)
T ss_pred ccCCCcCChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3344445566778999999999999999999875 332 579999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh-----Hhhccccc------------ccccc
Q 009090 111 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCR------------SAQRL 173 (544)
Q Consensus 111 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~~ 173 (544)
++++++++|||+++|++++|++|..+.+++.++++.+++++++++++... .+...... .....
T Consensus 78 ~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (559)
T PRK08315 78 VPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPEL 157 (559)
T ss_pred ChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCc
Confidence 99999999999999999999999999999999999999999999875421 11000000 00112
Q ss_pred cEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH
Q 009090 174 RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF 248 (544)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~ 248 (544)
+.++..+... ......|+++....... .........+++++++|||||||.||+|.+||+++...
T Consensus 158 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~ 227 (559)
T PRK08315 158 RRVIFLGDEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNN 227 (559)
T ss_pred eeEEeecccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHH
Confidence 2233322210 01123455544322110 11122346788999999999999999999999999988
Q ss_pred HhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHH
Q 009090 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEK 325 (544)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~ 325 (544)
+..+...+ .+..+|+++...|++|..++.. .+.++..|+++++... ++..+++.++++++|+++++|.++..
T Consensus 228 ~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 302 (559)
T PRK08315 228 GYFIGEAM-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIA 302 (559)
T ss_pred HHHHHHhc-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHH
Confidence 88776665 7889999999999999999875 5667889999986543 89999999999999999999999877
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHH
Q 009090 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV 405 (544)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~ 405 (544)
++..... ...+ ++++|.++++|+++++++.+.+.+
T Consensus 303 ~~~~~~~-------------------------------------~~~~--------~~~lr~~~~~G~~~~~~~~~~~~~ 337 (559)
T PRK08315 303 ELDHPDF-------------------------------------ARFD--------LSSLRTGIMAGSPCPIEVMKRVID 337 (559)
T ss_pred HHhCccc-------------------------------------CCCC--------chhhheeEecCCCCCHHHHHHHHH
Confidence 6532110 0011 138999999999999999999999
Q ss_pred hcCC-ceEEeeccccccCceeeccCCC--ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCC
Q 009090 406 TCCA-FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482 (544)
Q Consensus 406 ~~~~-~i~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~ 482 (544)
.++. .+++.||+||++.+++...... .....++|+|+++++++++| ++.+ .+++.|+.|||+|+|+.++.||+++
T Consensus 338 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~ 415 (559)
T PRK08315 338 KMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-ETVPRGEQGELCTRGYSVMKGYWND 415 (559)
T ss_pred HcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccC-CcCCCCCceEEEEECchhhhhhcCC
Confidence 8865 4999999999998766554332 23347899999999999999 4422 4566789999999999999999999
Q ss_pred hhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 483 ~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.+...| .++||+|||+|++++||.++++||.+|++++ +|++++|.+||++|.++|+|.|
T Consensus 416 ~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~ 477 (559)
T PRK08315 416 PEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQD 477 (559)
T ss_pred hhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceE
Confidence 99998888 7899999999999999999999999999997 7999999999999999999864
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=460.00 Aligned_cols=433 Identities=25% Similarity=0.323 Sum_probs=354.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|...++++|+++|+++. + +.+||.||.+++.++|..|.+.|+++||+|+++++|+.+++++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999865 3 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++..+.+++.++++.+++++++++.+....+.+................... ........
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 151 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGR--------EAPGGWLD 151 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeeccccc--------ccccchhh
Confidence 9999999999999999999999999999999999998876655432211110100010000000 00112334
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
++++...... .........+++++++|||||||.||+|.+||.++..........+ .+.++++++..+|++|..
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~ 225 (523)
T PRK08316 152 FADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCA 225 (523)
T ss_pred HHHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhh
Confidence 4444432211 1123345778999999999999999999999999998877766555 688999999999999999
Q ss_pred HHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....
T Consensus 226 g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 280 (523)
T PRK08316 226 QLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF------------------------- 280 (523)
T ss_pred hHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------------------------
Confidence 9875 4456889999999865 999999999999999999999999877542110
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC-cccc
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMV 435 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-~~~~ 435 (544)
...++ +++|.+++||+.++.++.+.+++.+ +.++++.||+||++.++....+.. ....
T Consensus 281 ------------~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 340 (523)
T PRK08316 281 ------------DTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRP 340 (523)
T ss_pred ------------ccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCcccccccc
Confidence 11111 3899999999999999999999988 789999999999998776654432 2344
Q ss_pred CccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeec
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~ 515 (544)
+++|++.++++++|++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||.+++.||.
T Consensus 341 ~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~ 417 (523)
T PRK08316 341 GSAGRPVLNVETRVVD-DDG--NDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRK 417 (523)
T ss_pred CCcccCCCCcEEEEEc-CCC--CCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEeccc
Confidence 7899999999999998 544 4456678999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCceechHhHHHHhhcCCCccC
Q 009090 516 KNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 516 ~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+|++ +|++++|.+||+.|.++|+|.+
T Consensus 418 ~~~i~~-~G~~i~~~~iE~~l~~~~~v~~ 445 (523)
T PRK08316 418 KDMIKT-GGENVASREVEEALYTHPAVAE 445 (523)
T ss_pred ccEEEe-CCeEECHHHHHHHHHhCCChhe
Confidence 999997 8999999999999999999864
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=461.61 Aligned_cols=430 Identities=26% Similarity=0.292 Sum_probs=355.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
..-+|+.+.+..+++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFL----G-----NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 45789999999999999999999864 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|+++..+.+++.++++.+++++++++......+... ....+....++...+... ....
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~ 153 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSD----------DSVL 153 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCc----------cccc
Confidence 99999999999999999999999999999999999988765544222 112233444444432110 1224
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC-CCCcEEEEecChHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAH 277 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~ 277 (544)
+++++...... .........+++++++|||||||.||+|.++|+++...+......+ .+ ..++++++..|++|
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 154 GYEDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFH 227 (542)
T ss_pred CHHHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHH
Confidence 55565543221 1222344567899999999999999999999999988877665544 44 57899999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.+|+...+.++..|+++++.+. ++..+++.++++++|.++++|.++..+........
T Consensus 228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------------------- 287 (542)
T PRK07786 228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-------------------- 287 (542)
T ss_pred HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------
Confidence 9998778888999999998652 89999999999999999999999988764321100
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC-c
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-M 432 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-~ 432 (544)
...++|.+++||+++++++.+++++.+ +..+++.||+||++.+.+...... .
T Consensus 288 --------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~ 341 (542)
T PRK07786 288 --------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAI 341 (542)
T ss_pred --------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccc
Confidence 001689999999999999999999998 789999999999998766543322 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEE
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~ 512 (544)
....++|+|++++.++|++ +++ ..++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.
T Consensus 342 ~~~~~~G~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~ 418 (542)
T PRK07786 342 RKLGSVGKVIPTVAARVVD-ENM--NDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVV 418 (542)
T ss_pred ccCCCccccCCCceEEEEC-CCC--CCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEE
Confidence 3447899999999999998 544 4556778999999999999999999999999999999999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.+|+|++ +|.+++|.+||++|.+||+|++
T Consensus 419 GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~ 449 (542)
T PRK07786 419 DRKKDMIIS-GGENIYCAEVENVLASHPDIVE 449 (542)
T ss_pred ecccceEEe-CCEEECHHHHHHHHHhCCCccE
Confidence 999999997 8999999999999999999864
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=513.15 Aligned_cols=439 Identities=19% Similarity=0.153 Sum_probs=344.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCC---CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
..++.++|+++++++|+++|+++. +.. ....+++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~ 311 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA 311 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence 468999999999999999999864 211 12346899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh---hHhhcccccc---cccccEEEEecCCchHHHHHHh
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
+|||+++|++++|++|.++.+++.++|+.+++++++++.... ..+....... ......+. +.+.... .
T Consensus 312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~ 385 (1389)
T TIGR03443 312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSL-----V 385 (1389)
T ss_pred HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-ecccccc-----c
Confidence 999999999999999999999999999999999999876421 1110000000 00011111 1110000 0
Q ss_pred hCCceeeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEE
Q 009090 192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (544)
.........++..... ..........++++++++|||||||.||||+++|+++.+.+..+...+ ++.++|++
T Consensus 386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 459 (1389)
T TIGR03443 386 -GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF 459 (1389)
T ss_pred -ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0000000001110000 001111234678999999999999999999999999999888777666 78899999
Q ss_pred EEecChHHHHHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 270 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
+...|++|..++...+.+++.|+++++++. ++..+.+.++++++|+++++|+++..|.....
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------- 525 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT-------------- 525 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence 999999999888888889999999999764 67899999999999999999999887643100
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCce
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT 424 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~ 424 (544)
...+++|.+++||+++++...+.+.+.+ ++.+++.||+||++.++
T Consensus 526 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 571 (1389)
T TIGR03443 526 ----------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV 571 (1389)
T ss_pred ----------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence 0113899999999999999999988876 78999999999998776
Q ss_pred eeccCCC----------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc---
Q 009090 425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--- 491 (544)
Q Consensus 425 ~~~~~~~----------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--- 491 (544)
+...... .....++|+|+++++++|++ +++...+++.|+.|||+|+|++++.||+++|+.+.+.|.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~ 650 (1389)
T TIGR03443 572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW 650 (1389)
T ss_pred EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence 6532211 01235789999999999999 655567788889999999999999999999999988872
Q ss_pred --------------------------CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 492 --------------------------~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||+|||+|++++||.|+++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~ 728 (1389)
T TIGR03443 651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRE 728 (1389)
T ss_pred ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhe
Confidence 479999999999999999999999999997 8999999999999999999864
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=469.56 Aligned_cols=428 Identities=19% Similarity=0.235 Sum_probs=330.3
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCC---CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
...|+.++++++++++|+++|+++. +. .++.++.+||.||.++++++|++|.+. +++||+|+++++|++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~ 107 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA 107 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence 3478999999999999999999875 32 234567899999999999999999986 9999999999999999999
Q ss_pred HHHHHHhcCCEEeec-CCCCC--hhHHHHHHHhcCceEEEEccchhhHhhccccccc-ccccEEEEecCCchHHHHHHhh
Q 009090 117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 192 (544)
++|||+++|++++|+ ++.++ .+++.++++.++++++|++++....+........ .....++.+++...
T Consensus 108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 179 (612)
T PRK12476 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD-------- 179 (612)
T ss_pred HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence 999999999999999 57666 7899999999999999998776554322111100 01122333322100
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCC-CCCCcEEEE
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLS 271 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~ 271 (544)
.. ..........++++++++|||||||.||||.++|+++...+......+ . +.+++++++
T Consensus 180 -------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~ 240 (612)
T PRK12476 180 -------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVS 240 (612)
T ss_pred -------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEE
Confidence 00 001112234678999999999999999999999999987766654444 4 678899999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEecC-----ChhhHHHHhh--hhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHH
Q 009090 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (544)
Q Consensus 272 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
++|++|.+|+...+.+++.|+++++..+ ++..+++.++ ++++++++.+|.++..++......
T Consensus 241 ~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~----------- 309 (612)
T PRK12476 241 WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP----------- 309 (612)
T ss_pred eCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh-----------
Confidence 9999999998776666556666655542 7888999994 589999999999887765421000
Q ss_pred HHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc---CC---ceEEeeccc
Q 009090 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLT 418 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~i~~~YG~t 418 (544)
.....+++ +++| +++||+++++++.++|.+.| |+ .+++.||+|
T Consensus 310 ----------------------~~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~T 358 (612)
T PRK12476 310 ----------------------AEGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIA 358 (612)
T ss_pred ----------------------hhhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchh
Confidence 00001122 3789 99999999999999999987 43 489999999
Q ss_pred cccCceeeccCCCc--------------------------cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec
Q 009090 419 ETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG 472 (544)
Q Consensus 419 E~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~ 472 (544)
|++..++...+... ...+++|+|+++++++|++ ++. ..+++.|+.|||+++|
T Consensus 359 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~-g~~~~~g~~GEl~v~g 436 (612)
T PRK12476 359 EATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDT-GAELPDGEVGEIWLHG 436 (612)
T ss_pred hhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCC-CcCCCCCCEEEEEEcC
Confidence 98866543322110 0125789999999999999 442 2456678999999999
Q ss_pred CCccccccCChhhhhhccc-------------------CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHH
Q 009090 473 KTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533 (544)
Q Consensus 473 ~~v~~gy~~~~~~~~~~~~-------------------~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE 533 (544)
++++.||+++++.+.+.|. ++||+|||+|+++ ||+|+++||.+|+|++ +|++|+|.|||
T Consensus 437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE 514 (612)
T PRK12476 437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIE 514 (612)
T ss_pred CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHH
Confidence 9999999999999988873 2499999999985 9999999999999998 89999999999
Q ss_pred HHhhc-CCCccC
Q 009090 534 NVYCV-APIIED 544 (544)
Q Consensus 534 ~~l~~-~~~V~~ 544 (544)
++|.+ ||.|.|
T Consensus 515 ~~l~~~~p~V~~ 526 (612)
T PRK12476 515 ATVAEASPMVRR 526 (612)
T ss_pred HHHHHhcccccC
Confidence 99985 799864
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=461.41 Aligned_cols=432 Identities=24% Similarity=0.325 Sum_probs=347.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
.....|+.++|...++++|+++|++.. + +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++
T Consensus 3 ~~~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~ 73 (528)
T PRK07470 3 SRRVMNLAHFLRQAARRFPDRIALVWG----D-----RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73 (528)
T ss_pred cccCCCHHHHHHHHHHHCCCceEEEEC----C-----ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 345678999999999999999998754 3 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
++||+++|++++|+++..+.+++.++++.+++++++++........... ........++.+.... ..
T Consensus 74 ~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~ 140 (528)
T PRK07470 74 MFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR-AASPDLTHVVAIGGAR------------AG 140 (528)
T ss_pred HHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHH-hhCCcCceEEEeCCCc------------cc
Confidence 9999999999999999999999999999999999999987654332211 1112333444433211 12
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
.+++++...............++++++++|||||||.||+|.++|.++...+....... .......|+++..+|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~ 217 (528)
T PRK07470 141 LDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSH 217 (528)
T ss_pred ccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchh
Confidence 34555544321222223345678999999999999999999999999876554322211 113567899999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.+++...+ .++.|++.++.+. ++..+++.++++++|++.++|.++..+.+....
T Consensus 218 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------- 274 (528)
T PRK07470 218 GAGIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV---------------------- 274 (528)
T ss_pred HHHHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc----------------------
Confidence 99886543 5677777776643 889999999999999999999999887542110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC----
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD---- 430 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~---- 430 (544)
... ..+++|.+++||+++++...+++.+.++..+++.||+||+++.+......
T Consensus 275 ---------------~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~ 331 (528)
T PRK07470 275 ---------------DRY--------DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDA 331 (528)
T ss_pred ---------------CCC--------CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccc
Confidence 001 12489999999999999999999998899999999999998876654321
Q ss_pred ---CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCC
Q 009090 431 ---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507 (544)
Q Consensus 431 ---~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g 507 (544)
.....+++|.|.+++++++++ +++. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||
T Consensus 332 ~~~~~~~~~~~G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g 408 (528)
T PRK07470 332 EDGPDARIGTCGFERTGMEVQIQD-DEGR--ELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARG 408 (528)
T ss_pred cccccceeeccCcccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCC
Confidence 122346889999999999998 5443 4567789999999999999999999999988899999999999999999
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.||.||+|++ +|++++|.+||++|.++|+|.+
T Consensus 409 ~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~ 444 (528)
T PRK07470 409 FLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSE 444 (528)
T ss_pred eEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceE
Confidence 99999999999997 7999999999999999999864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=477.35 Aligned_cols=404 Identities=21% Similarity=0.224 Sum_probs=331.1
Q ss_pred ccHHHHHHHHHHc--CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 42 ~tl~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
.|+.++|..+++. +||++|++.. ..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3788999998886 7999998642 259999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.++++++|++.+....+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999987654332110 000 0
Q ss_pred HHHHHhcc-cccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhh-hhhhcccCCCCCCcEEEEecChHH
Q 009090 200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 200 ~~~l~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
..++.... ...+.......++++++++|||||||.||+|.++|+++...+..+. ..+ .+..+|+++...|++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 198 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF 198 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence 00111000 0011112234568899999999999999999999999988775543 223 6788999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.+++.. .+.++..|+++++.+. ++..+...+.++++|+++++|.++..+++....
T Consensus 199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------- 256 (705)
T PRK06060 199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------- 256 (705)
T ss_pred hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence 888753 5668999999999874 788889999999999999999999887642210
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCcc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
...+++|.+++||+++++++.++|.+.+ ++++++.||+||++.++....... .
T Consensus 257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~ 310 (705)
T PRK06060 257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W 310 (705)
T ss_pred -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence 0113899999999999999999999988 589999999999987655443322 2
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEe
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~G 513 (544)
..+++|+|.+++++++++ +++ .+++.|+.|||||+|+.++.||+++++.+.. .+|||+|||+|++++||++++.|
T Consensus 311 ~~~~iG~p~~~~~v~i~d-~~g--~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G 385 (705)
T PRK06060 311 RLGTLGRVLPPYEIRVVA-PDG--TTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC 385 (705)
T ss_pred CcCcccccCCCcEEEEEC-CCC--CCCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence 347899999999999998 443 4566788999999999999999999876432 57999999999999999999999
Q ss_pred eccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 514 RKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 514 R~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|.||+|++ +|++|+|.+||++|.+||+|.+
T Consensus 386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~ 415 (705)
T PRK06060 386 RADDTEVI-GGVNVDPREVERLIIEDEAVAE 415 (705)
T ss_pred ccCceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 99999998 7999999999999999999864
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=452.74 Aligned_cols=403 Identities=31% Similarity=0.464 Sum_probs=313.5
Q ss_pred HHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCE
Q 009090 48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (544)
Q Consensus 48 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 127 (544)
|+++|+++||++|+++. ++ +++||+||+++++++|..|++.|+++||+|+++++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 68999999999999861 12 79999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCChhHHHHHHHhcCceEEEE----ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHH
Q 009090 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF 203 (544)
Q Consensus 128 ~v~i~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 203 (544)
++|++|.++.+++.++|+.++++++|+ +......+...... ......++.++..... ..+.+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQ-EDPSSSIIILDRDDLP-------------KKEAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTT-STTTEEEEEESHSSCT-------------TCHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhcc-cccccccccccccccc-------------ccccc
Confidence 999999999999999999999999997 22222222121111 1122334444322110 00111
Q ss_pred HhcccccccccCC-CCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHH-
Q 009090 204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR- 281 (544)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~- 281 (544)
.......... .. ..++++++++|||||||.||+|.++|+++++.+..+. +... ..++ |++++.+|++|.+|+
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence 1000000000 00 0568999999999999999999999999999988764 1111 1233 699999999999999
Q ss_pred HHHHHHHHcCcEEEEecC-C---hhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
...+.++..|+++++++. . +..+++.++++++|+++++|.++..+++..+.. ...
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~-------------------- 271 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI-------------------- 271 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence 568889999999999987 2 477899999999999999999999987621111 000
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-ceEEeeccccccCceeecc-CCCcccc
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV 435 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~-~~~~~~~ 435 (544)
.. ..++++|.++++|+++++++.+++++.++. +|++.||+||++.+++... .......
T Consensus 272 ------------~~--------~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 331 (417)
T PF00501_consen 272 ------------SK--------KDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP 331 (417)
T ss_dssp ------------TT--------TTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred ------------cc--------cccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence 00 012379999999999999999999999987 9999999999999988664 3333455
Q ss_pred CccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC-CccccCceEEEccCCcEEEEee
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR 514 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~-g~~~TGDlg~~~~~g~l~~~GR 514 (544)
+++|.|+|+++++|++ ++ +..+++.|+.|||+|+|+.++.||+++++.+.+.|.+ |||+|||+|++|+||+++++||
T Consensus 332 ~~~G~~~~~~~~~ivd-~~-~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR 409 (417)
T PF00501_consen 332 GSVGKPLPGVEVKIVD-PN-TGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR 409 (417)
T ss_dssp TSEBEESTTEEEEEEC-TT-TSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred cccccccccccccccc-cc-ccccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence 7899999999999998 44 2345577889999999999999999999999999965 8999999999999999999999
Q ss_pred ccceeec
Q 009090 515 KKNLIKI 521 (544)
Q Consensus 515 ~~d~i~~ 521 (544)
.||+||+
T Consensus 410 ~~~~i~~ 416 (417)
T PF00501_consen 410 SDDMIKV 416 (417)
T ss_dssp GSCEEEE
T ss_pred eCCEEEe
Confidence 9999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=463.43 Aligned_cols=444 Identities=24% Similarity=0.330 Sum_probs=345.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..++.++|+++++++|+++|++.. + +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 458999999999999999998753 3 5799999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEec--CCchHHHHH--------
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM-------- 189 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------- 189 (544)
||+++|++++|+++..+.+++.++++.++++++++++.....+....... ....++... +........
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--GIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--CceEEEeechhhccccccchhccccccc
Confidence 99999999999999999999999999999999999875544332211110 011111100 000000000
Q ss_pred -----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccC---
Q 009090 190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED--- 261 (544)
Q Consensus 190 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~--- 261 (544)
.........+|+++................+++++++|||||||.||+|.++|+++...+......+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 000001224566555433222222334567899999999999999999999999998777665544311100
Q ss_pred -CCCC-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHh
Q 009090 262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (544)
Q Consensus 262 -~~~~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 336 (544)
.... +++++..+|++|.+++.. ++..+..|.+.++... ++..++..++++++|++.++|.++..+.+...
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 0222 357789999999999875 4455778887776543 88899999999999999999999988754211
Q ss_pred hchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeec
Q 009090 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416 (544)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG 416 (544)
....++ +++|.+++||+++++.+.++|++.+++++++.||
T Consensus 327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 366 (562)
T PRK12492 327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG 366 (562)
T ss_pred --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence 001111 3899999999999999999999988999999999
Q ss_pred cccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCcc
Q 009090 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495 (544)
Q Consensus 417 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~ 495 (544)
+||++.+++..........+++|+|+++++++|++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus 367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~ 443 (562)
T PRK12492 367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDG--NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF 443 (562)
T ss_pred ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCC--CCCCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence 99999877765544444457899999999999998 544 445678899999999999999999999998888 58999
Q ss_pred ccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 496 ~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|+++++|++++.||.+|+|++ +|++++|.+||+.|.+||+|++
T Consensus 444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~ 491 (562)
T PRK12492 444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVAN 491 (562)
T ss_pred ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 99999999999999999999999997 7999999999999999999864
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=461.56 Aligned_cols=435 Identities=27% Similarity=0.373 Sum_probs=349.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|++.++++|+++|+++. +.. +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 15 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 87 (558)
T PRK12583 15 LLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQ 87 (558)
T ss_pred cccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 34568999999999999999999875 322 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh-----Hhhcccc------------cccccccEEEEecC
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDC------------RSAQRLRVMVCFTS 181 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~ 181 (544)
|||+++|++++++++..+.+++.++++.++++++|+++.... .+..... ...+....++....
T Consensus 88 ~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (558)
T PRK12583 88 FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP 167 (558)
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC
Confidence 999999999999999999999999999999999999764321 1111000 00112222332222
Q ss_pred CchHHHHHHhhCCceeeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhh
Q 009090 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256 (544)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~ 256 (544)
... .....|+++....... ........++++++++|||||||.||+|.++|+++...+......+
T Consensus 168 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~ 237 (558)
T PRK12583 168 APP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237 (558)
T ss_pred CCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 110 1122344443322110 1112234678899999999999999999999999988887766655
Q ss_pred hcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHH
Q 009090 257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333 (544)
Q Consensus 257 ~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~ 333 (544)
++..+|++++..|++|.+|... .+.++..|++++++.. ++..+++.++++++|+++++|.++..++.....
T Consensus 238 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~- 311 (558)
T PRK12583 238 -----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR- 311 (558)
T ss_pred -----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc-
Confidence 7788999999999999999875 5567888999887654 889999999999999999999998776532110
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceE
Q 009090 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLV 412 (544)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~ 412 (544)
...++ +++|.+++||+++++++.+++.+.++ ..++
T Consensus 312 ------------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~ 347 (558)
T PRK12583 312 ------------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQ 347 (558)
T ss_pred ------------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCccee
Confidence 00111 38999999999999999999999886 4799
Q ss_pred EeeccccccCceeeccCCC--ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc
Q 009090 413 QGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490 (544)
Q Consensus 413 ~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~ 490 (544)
+.||+||++.+++...... .....++|.|.+++.+++++ ++ ..+++.|+.|||+++|+.++.||+++++.+...+
T Consensus 348 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 424 (558)
T PRK12583 348 IAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PD--GATVPRGEIGELCTRGYSVMKGYWNNPEATAESI 424 (558)
T ss_pred ccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CC--CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhc
Confidence 9999999998876654322 22347899999999999999 54 3556778899999999999999999999998887
Q ss_pred -cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 491 -~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.++||+|||+|++++||++++.||.+|+|++ +|.+|+|.+||++|.+||+|.|
T Consensus 425 ~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~ 478 (558)
T PRK12583 425 DEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVAD 478 (558)
T ss_pred CCCCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeE
Confidence 7899999999999999999999999999997 8999999999999999999864
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=459.19 Aligned_cols=429 Identities=22% Similarity=0.305 Sum_probs=345.8
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
.++.++|++.++++||++|+++. ++ +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999998753 32 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh-----hHhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
+++|++++|+++..+.+++.++++.++++++++++... ..+.... ........++..+..... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQ-NQLPQLQQIVGVDKLAPA---------TS 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHH-hhCCCCcEEEEeCCcCCC---------cC
Confidence 99999999999999999999999999999999976421 1111111 111233344444332110 01
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
..++.++....... ........+++++++|||||||.||+|.++|.++......+...+ .+.++|++++..|++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG 238 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence 22444444332111 112234678999999999999999999999999988877665554 678899999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|..+..+++.....
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------- 297 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------- 297 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence 9999875 5567888999998876 8999999999999999998887776655422110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-cc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC 433 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~ 433 (544)
. ..++++|.+++||+++++++.+.+.+. ++++++.||+||++.+.+...... ..
T Consensus 298 ----------------~--------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~ 352 (547)
T PRK06087 298 ----------------P--------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR 352 (547)
T ss_pred ----------------C--------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence 0 012489999999999999999988875 999999999999988766554332 22
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEE
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~ 512 (544)
...++|.+.+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|+++++|.+++.
T Consensus 353 ~~~~~G~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~ 429 (547)
T PRK06087 353 FMHTDGYAAAGVEIKVVD-EAR--KTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429 (547)
T ss_pred cCCcCCccCCCceEEEEc-CCC--CCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence 235789999999999988 544 455678899999999999999999999988877 6899999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.+|+|++ +|++++|.+||++|.++|+|++
T Consensus 430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~ 460 (547)
T PRK06087 430 GRKKDIIVR-GGENISSREVEDILLQHPKIHD 460 (547)
T ss_pred ecchhhhhc-CCEEECHHHHHHHHHhCCCeeE
Confidence 999999996 8999999999999999999864
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-55 Score=475.35 Aligned_cols=421 Identities=21% Similarity=0.291 Sum_probs=329.0
Q ss_pred CcccHHHHHHHHHHcCCC-CCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+..|+.++|.++++++|+ ++|+... + ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~----~----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV----N----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC----C----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457899999999999998 5776421 1 25799999999999999999987 599999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcc-cccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP-DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
|||+++|++++|+++.++.+++.++++.++++++|++.+........ ......... ++...+... .
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------D 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------h
Confidence 99999999999999999999999999999999999987764421100 000111111 122221100 0
Q ss_pred eeHHHH--H-hcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecC
Q 009090 198 YSWDEF--L-HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 198 ~~~~~l--~-~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (544)
..+.+. . ..............++++++++|||||||.||||++||.++...+......+ ++..+|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 001100 0 0000001111234678999999999999999999999999998887766555 6789999999999
Q ss_pred hHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 275 ~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
++|.+++.. .+.++..|+++++.+. ++..+.+.+.++++|+++++|+++..+.+..
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------- 473 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------- 473 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence 999999875 5678999999998864 6678889999999999999999887653210
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 431 (544)
...+ .++||.+++||+++++++.+.|++.+|+++++.||+||++++++...+..
T Consensus 474 ------------------~~~~--------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~ 527 (718)
T PRK08043 474 ------------------NPYD--------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA 527 (718)
T ss_pred ------------------Cccc--------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence 0011 13899999999999999999999999999999999999988776554332
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccC--Chhh-------hhhc-ccCCccccCceE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDL-------TRES-IIDGWFHTGDIG 501 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~--~~~~-------~~~~-~~~g~~~TGDlg 501 (544)
...+++|+|.|++++++++ +++ .++.|||+++|+.++.||++ +++. +.+. +.+|||+|||+|
T Consensus 528 -~~~~svG~p~pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg 599 (718)
T PRK08043 528 -AKPGTVGRILPGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV 599 (718)
T ss_pred -cCCCCCCCcCCCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence 3458999999999999998 332 13569999999999999998 3442 1222 257999999999
Q ss_pred EEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCcc
Q 009090 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (544)
Q Consensus 502 ~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~ 543 (544)
++|+||++++.||.+|+|++ +|++|+|.|||+++.+|+.|.
T Consensus 600 ~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~ 640 (718)
T PRK08043 600 RFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDK 640 (718)
T ss_pred EEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccc
Confidence 99999999999999999997 799999999999999998764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=453.29 Aligned_cols=419 Identities=22% Similarity=0.316 Sum_probs=342.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.++|+++++++|+++|+++. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 457889999999999999998764 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++..+.+++.++++.+++++++++++....... ....+..+..... ++
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hh
Confidence 99999999999999999999999999999999998766433210 0111222211100 01
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
..+.... ..........++++++++|||||||.||+|.++|+++...+......+ .+..+++++...|++|.++
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~ 204 (497)
T PRK06145 131 RRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA 204 (497)
T ss_pred HHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence 1111100 011112234678999999999999999999999999886655444433 6788999999999999998
Q ss_pred HHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
+.. .+.+++.|+++++.+. ++..+++.++++++|.+.++|.++..+++.....
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------------------------- 259 (497)
T PRK06145 205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------------------------- 259 (497)
T ss_pred HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-------------------------
Confidence 865 4567899999988776 9999999999999999999999998876431110
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCC-CccccC
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVG 436 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~-~~~~~~ 436 (544)
..++ +++|.+++||+++++++.+++.+.+ +.++++.||+||+++.++..... .....+
T Consensus 260 ------------~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 319 (497)
T PRK06145 260 ------------RFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319 (497)
T ss_pred ------------cccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence 0111 3799999999999999999999988 67899999999999876554332 223347
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecc
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~ 516 (544)
++|.|.+++++++.+ +++ ..++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+|++++||++++.||.+
T Consensus 320 ~~G~~~~~~~~~i~~-~~~--~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~ 396 (497)
T PRK06145 320 STGRALAHVEIRIAD-GAG--RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK 396 (497)
T ss_pred CcccCCCCceEEEEC-CCC--CCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence 899999999999998 544 34566789999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceechHhHHHHhhcCCCccC
Q 009090 517 NLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 517 d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++ +|.+++|.+||++|.++|+|.+
T Consensus 397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~ 423 (497)
T PRK06145 397 DMIIS-GGENIASSEVERVIYELPEVAE 423 (497)
T ss_pred ceEEe-CCeEECHHHHHHHHHhCCCeeE
Confidence 99997 8999999999999999999864
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=465.70 Aligned_cols=445 Identities=18% Similarity=0.156 Sum_probs=332.5
Q ss_pred CCcccH-HHHHHHHHHcCCCCCceEeecccCCC--CCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHH
Q 009090 39 SDLNTA-WDIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (544)
Q Consensus 39 ~~~~tl-~~~l~~~a~~~p~~~a~~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~ 115 (544)
....|+ ..+|+++++++|+++|+++. +.. +++++++||.||.+++.++|+.|++.|+++||+|+++++|+++++
T Consensus 171 g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~v 247 (728)
T PLN03052 171 GAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAV 247 (728)
T ss_pred CCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 333444 44677766778999999986 321 335689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhh-----cccccccccccEEEEecCCchHHHHHH
Q 009090 116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-----SPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (544)
Q Consensus 116 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (544)
+++|||+++|++++|++|.++.+++.+++++++++++|+++.....-. ........ ..++.+....... .
T Consensus 248 ia~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~-~-- 322 (728)
T PLN03052 248 IIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV-R-- 322 (728)
T ss_pred HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc-c--
Confidence 999999999999999999999999999999999999999875432100 00000000 1222222111000 0
Q ss_pred hhCCceeeeHHHHHhcccc----cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCC
Q 009090 191 VQTGIKPYSWDEFLHLGKV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD 266 (544)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~ 266 (544)
........+|++++..... .........++++++|+|||||||.||||+++|.+++..+......+ ++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~ 397 (728)
T PLN03052 323 VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKG 397 (728)
T ss_pred cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCC
Confidence 0000123457776543211 11111223568999999999999999999999999877665544333 67889
Q ss_pred cEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHH
Q 009090 267 DVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (544)
Q Consensus 267 d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
|++++..|+.|+++....+.++..|++++++.+ ++..+++.++++++|++.++|+++..+.+..
T Consensus 398 d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-------------- 463 (728)
T PLN03052 398 DIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-------------- 463 (728)
T ss_pred cEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC--------------
Confidence 999999999999998777789999999999976 5578999999999999999999998875421
Q ss_pred HHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCc
Q 009090 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGP 423 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~ 423 (544)
....++++ +||.++++|++++++...++.+.++ .++.+.||+||+++.
T Consensus 464 -----------------------~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~ 512 (728)
T PLN03052 464 -----------------------CMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGG 512 (728)
T ss_pred -----------------------CcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcc
Confidence 01122333 8999999999999999998888775 579999999999875
Q ss_pred eeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCc--cccccCChhhhhhccc-----CC--c
Q 009090 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRESII-----DG--W 494 (544)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v--~~gy~~~~~~~~~~~~-----~g--~ 494 (544)
+....+......+++|.|.+|++++|+| +++...+.+..+.|||+++++.. ..+|+++.. ....|. .| |
T Consensus 513 ~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~ 590 (728)
T PLN03052 513 FVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKIL 590 (728)
T ss_pred cccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEE
Confidence 4443332233457899999999999999 65554433222469999986532 345666532 222231 23 8
Q ss_pred cccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhh-cCCCccC
Q 009090 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIED 544 (544)
Q Consensus 495 ~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~-~~~~V~~ 544 (544)
|+|||+|++|+||+++++||.||+|++ +|++|.|.|||++|. .||+|.|
T Consensus 591 ~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~e 640 (728)
T PLN03052 591 RRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLE 640 (728)
T ss_pred EecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcce
Confidence 999999999999999999999999997 899999999999995 8998865
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=461.03 Aligned_cols=411 Identities=19% Similarity=0.240 Sum_probs=317.6
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
+.+.+.|+.+++++|+++|+++. +++.++++||+||.++++++|.+|.+. ++||+|+++++|++++++++|||
T Consensus 2 ~~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~ 74 (525)
T PRK05851 2 NELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGA 74 (525)
T ss_pred chHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHH
Confidence 45889999999999999999754 334578999999999999999999987 89999999999999999999999
Q ss_pred HhcCCEEeecCCC-------CChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCC
Q 009090 122 NALSLICVPLYDT-------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (544)
Q Consensus 122 ~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (544)
+++|+++++++.. ...+++.++++.++++++|++......+..... . +...+
T Consensus 75 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------- 133 (525)
T PRK05851 75 WLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------- 133 (525)
T ss_pred HHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence 9999986533211 123456677899999999998766544322110 0 00000
Q ss_pred ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCC-CCcEEEEec
Q 009090 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFL 273 (544)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~ 273 (544)
+...... ..........++++++++|||||||.||||.+||.++...+..+...+ ++. .+|++++++
T Consensus 134 -----~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~ 201 (525)
T PRK05851 134 -----LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL 201 (525)
T ss_pred -----ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence 0000000 000011224678999999999999999999999999999888776665 677 899999999
Q ss_pred ChHHHHHHHHHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 009090 274 PLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (544)
Q Consensus 274 p~~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (544)
|++|.+++...+.+++.|+++++.+. ++..+++.+.++++|++...|.++..+.+....
T Consensus 202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~---------------- 265 (525)
T PRK05851 202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR---------------- 265 (525)
T ss_pred CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc----------------
Confidence 99999999877888999999999763 577899999999999875554444433221100
Q ss_pred HHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHh---cCC---ceEEeeccccccC
Q 009090 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCG 422 (544)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~i~~~YG~tE~~~ 422 (544)
....++ ++||.+++||+++++++.++|.+. +|. .+++.||+||++.
T Consensus 266 --------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 317 (525)
T PRK05851 266 --------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC 317 (525)
T ss_pred --------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence 000112 389999999999999999988875 354 4999999999987
Q ss_pred ceeeccCCC--------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhh
Q 009090 423 PTTVCFPDE--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488 (544)
Q Consensus 423 ~~~~~~~~~--------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~ 488 (544)
.+....+.. ....+++|+|+++++++|+| +++ ..+++.|+.|||+++|++++.||+++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~-~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-- 393 (525)
T PRK05851 318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDG-AAGVAGREIGEIEIRGASMMSGYLGQAPID-- 393 (525)
T ss_pred EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCC-CccCCCCCeEEEEEecCchhhccccCCccC--
Confidence 665433211 12236799999999999998 443 344667889999999999999999998643
Q ss_pred cccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 489 ~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|||+|||+|+++ +|.++++||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 394 --~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~ 445 (525)
T PRK05851 394 --PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVRE 445 (525)
T ss_pred --CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCccc
Confidence 47899999999996 8999999999999998 8999999999999999999975
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=454.47 Aligned_cols=430 Identities=23% Similarity=0.272 Sum_probs=352.5
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
++.++|+.+++++|+++|+.+. + +++||.||.+++.++|++|++.|+++||+|+++++|+.+++++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH----D-----RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999864 3 489999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (544)
++|++++|+++.++.+++.++++.++++++|++.+....+...... ......++.+.+.... .........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHA-----SEGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCcccc-----cCCccccccHHH
Confidence 9999999999999999999999999999999988765544332221 1233444444432211 001223345666
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH
Q 009090 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (544)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 282 (544)
+...... ........+++++++|||||||.||+|.+||.++...+......+ .+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~ 218 (515)
T TIGR03098 146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN 218 (515)
T ss_pred hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence 5543211 122334567899999999999999999999999998888776655 678899999999999999988
Q ss_pred HHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccC
Q 009090 283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361 (544)
Q Consensus 283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (544)
..+.++..|+++++.+. ++..+.+.++++++|++.++|.++..+.+....
T Consensus 219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 269 (515)
T TIGR03098 219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------- 269 (515)
T ss_pred HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence 88889999999998876 899999999999999999999999887542100
Q ss_pred cCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCccccCccCc
Q 009090 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP 440 (544)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 440 (544)
...++++|.++++|+++++++.+.+++.+ +..+++.||+||++..............+++|+
T Consensus 270 -----------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~ 332 (515)
T TIGR03098 270 -----------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK 332 (515)
T ss_pred -----------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence 00123899999999999999999999988 688999999999986655443332344579999
Q ss_pred CccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc------------CCccccCceEEEccCCc
Q 009090 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV 508 (544)
Q Consensus 441 ~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~------------~g~~~TGDlg~~~~~g~ 508 (544)
+.+++++++++ +++. +++.++.|||+++|+.++.||+++++.+.+.|. ++||+|||+|+++++|+
T Consensus 333 ~~~~~~~~i~~-~~~~--~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 409 (515)
T TIGR03098 333 AIPNAEVLVLR-EDGS--ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF 409 (515)
T ss_pred ecCCCEEEEEC-CCCC--CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence 99999999998 4443 456678999999999999999999988766552 34899999999999999
Q ss_pred EEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 509 l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++.||.+|+|++ +|.+++|.+||++|.+||.|+|
T Consensus 410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~ 444 (515)
T TIGR03098 410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAE 444 (515)
T ss_pred EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeE
Confidence 9999999999997 7999999999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-54 Score=456.89 Aligned_cols=447 Identities=23% Similarity=0.317 Sum_probs=348.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
+...+++.++|..+++++|+++|+++. + ..+||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus 19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~ 89 (557)
T PRK07059 19 ASQYPSLADLLEESFRQYADRPAFICM----G-----KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA 89 (557)
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEc----C-----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence 345678999999999999999999864 3 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCch-HHHHH-------
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKEM------- 189 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------- 189 (544)
++||+++|++++|++|.++.+++.++++.++++++|+++.....+...... .....++....... .....
T Consensus 90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (557)
T PRK07059 90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR 167 (557)
T ss_pred HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence 999999999999999999999999999999999999987664433222111 11122221110000 00000
Q ss_pred --H----hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcc-cCC
Q 009090 190 --A----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF-EDK 262 (544)
Q Consensus 190 --~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~-~~~ 262 (544)
. .........+++++..............++++++++|||||||.||+|.++|.+++..+......+... ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~ 247 (557)
T PRK07059 168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK 247 (557)
T ss_pred cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence 0 000012234555544332222223445778999999999999999999999999987665433222110 001
Q ss_pred -CCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhc
Q 009090 263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (544)
Q Consensus 263 -~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (544)
......+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|.++..+.+...
T Consensus 248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~------- 320 (557)
T PRK07059 248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD------- 320 (557)
T ss_pred CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence 113457888999999988764 5567788888777654 78899999999999999999999988764211
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccc
Q 009090 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~t 418 (544)
....++ +++|.++.||+++++.+.+.|.+.+++++++.||+|
T Consensus 321 ------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t 362 (557)
T PRK07059 321 ------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS 362 (557)
T ss_pred ------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeeccccc
Confidence 011122 278999999999999999999998999999999999
Q ss_pred cccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCcccc
Q 009090 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497 (544)
Q Consensus 419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~T 497 (544)
|++.++............++|.|++++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+...| .+|||+|
T Consensus 363 E~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~T 439 (557)
T PRK07059 363 ETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDG--NDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT 439 (557)
T ss_pred cccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCC--CCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceec
Confidence 999877665544344457899999999999998 544 456677899999999999999999999998877 6899999
Q ss_pred CceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 498 GDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|+++++|++++.||.+|+|++ +|++++|.+||++|.+||+|.+
T Consensus 440 GDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~ 485 (557)
T PRK07059 440 GDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLE 485 (557)
T ss_pred CcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeE
Confidence 999999999999999999999997 7999999999999999999864
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=498.09 Aligned_cols=435 Identities=24% Similarity=0.298 Sum_probs=350.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
+....++.+.|.++++++|+++|+++. ++ +++||+||.++++++|+.|.+ ++++||+|+++++|+++++++
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~ 681 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALA 681 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHH
Confidence 356678999999999999999999743 22 479999999999999999987 589999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccc-ccccccEEEEecCCchHHHHHHhhCCce
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
++||+++|++++|+++..+.+++.++++++++++++++++....+...... .......++..++..... ..
T Consensus 682 ~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 753 (1146)
T PRK08633 682 NLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------SK 753 (1146)
T ss_pred HHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------ch
Confidence 999999999999999999999999999999999999998776655321100 111222333333211100 00
Q ss_pred eeeHHHHHhccccc-----ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEE
Q 009090 197 PYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (544)
Q Consensus 197 ~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (544)
...+.+........ ........++++++++|||||||.||+|.+||+++...+......+ ...++|++++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~ 828 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILS 828 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 00111111110000 0001345678999999999999999999999999999888776665 6788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 009090 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (544)
Q Consensus 272 ~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (544)
.+|++|.+|+.. .+.++..|+++++.+. ++..+.+.++++++|++.++|.+++.+.+....
T Consensus 829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------- 892 (1146)
T PRK08633 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL---------------- 892 (1146)
T ss_pred cCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc----------------
Confidence 999999999876 6678999999988764 889999999999999999999999887642110
Q ss_pred HHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeecc
Q 009090 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (544)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 428 (544)
+.. ..+++|.+++||+++++++.+++++.+|.++++.||+||++++++...
T Consensus 893 ---------------------~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 943 (1146)
T PRK08633 893 ---------------------HPL--------MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL 943 (1146)
T ss_pred ---------------------Ccc--------cCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEec
Confidence 001 123899999999999999999999999999999999999988776553
Q ss_pred CCC---------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC----Ccc
Q 009090 429 PDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWF 495 (544)
Q Consensus 429 ~~~---------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~----g~~ 495 (544)
++. ....+++|+|.|+++++++| +++ ..+++.|+.|||+++|+.++.||+++++.+.+.+.+ |||
T Consensus 944 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633 944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PET-FEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred CcccccccccccCCCCCCccccCCCCEEEEEc-CCC-CccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence 321 12357899999999999998 433 355678899999999999999999999999988876 999
Q ss_pred ccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCc
Q 009090 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542 (544)
Q Consensus 496 ~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V 542 (544)
+|||+|++|+||++++.||.||+|++ +|++|+|.|||++|.+||++
T Consensus 1022 ~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~ 1067 (1146)
T PRK08633 1022 VTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGG 1067 (1146)
T ss_pred ECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCC
Confidence 99999999999999999999999997 89999999999999999953
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-54 Score=451.13 Aligned_cols=423 Identities=25% Similarity=0.344 Sum_probs=345.1
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
.+++.+++..++ .+|+++|+... ++ +.+||.||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999 99999998753 33 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++..+.+++..+++.++++++++++.....+...... .....++..+.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence 999999999999999999999999999999999998776554332211 11122333322111 011
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.+..... ..........++++++++|||||||.||+|.++|+++...+......+ .+.++|++++..|++|..+
T Consensus 138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 211 (504)
T PRK07514 138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG 211 (504)
T ss_pred HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence 1111110 111222345678999999999999999999999999999887766555 6788999999999999999
Q ss_pred HHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
+.. .+.++..|+++++.+. ++..+++.+ .++|.+.++|.++..+++...
T Consensus 212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~--------------------------- 262 (504)
T PRK07514 212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR--------------------------- 262 (504)
T ss_pred HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence 875 5567999999998876 888898888 479999999999988754210
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCcc
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~ 438 (544)
.... ..+++|.+++||+++++++.+.|++.++.++++.||+||++....... .......++
T Consensus 263 ----------~~~~--------~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~ 323 (504)
T PRK07514 263 ----------LTRE--------AAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPY-DGERRAGTV 323 (504)
T ss_pred ----------CCcc--------cccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCc-cccccCccc
Confidence 0001 113899999999999999999999999999999999999986554332 222334789
Q ss_pred CcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccc
Q 009090 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN 517 (544)
Q Consensus 439 G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d 517 (544)
|.|.+++++++++ +++ ..+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|
T Consensus 324 G~~~~~~~v~i~d-~~~-~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~ 401 (504)
T PRK07514 324 GFPLPGVSLRVTD-PET-GAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD 401 (504)
T ss_pred ccCCCCcEEEEEE-CCC-CCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence 9999999999998 433 3566788899999999999999999999998888 589999999999999999999999999
Q ss_pred eeecCCCceechHhHHHHhhcCCCccC
Q 009090 518 LIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 518 ~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++ +|.+++|.+||++|.++++|.|
T Consensus 402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~ 427 (504)
T PRK07514 402 LIIS-GGYNVYPKEVEGEIDELPGVVE 427 (504)
T ss_pred eEEe-CCeEECHHHHHHHHHhCCCeeE
Confidence 9997 8999999999999999998864
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=452.80 Aligned_cols=449 Identities=24% Similarity=0.307 Sum_probs=346.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
.+....++.++|+++++.+|+++|++.. + +.+||.||.++++++|++|.+.|+++||+|+++++|+.++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~ 86 (541)
T TIGR03205 16 ATIARGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPI 86 (541)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence 3345669999999999999999998754 3 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh--hHhhcccccccccccEEEEecCCchHHHHH---Hh
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQKEM---AV 191 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 191 (544)
+++||+++|++++|++|..+.+++.++++.++++++|+++... ....+.... .....++..+......... ..
T Consensus 87 ~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (541)
T TIGR03205 87 NFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPI 164 (541)
T ss_pred HHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEeccccccccccccccc
Confidence 9999999999999999999999999999999999999986321 111111100 1122222222211000000 00
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (544)
.......+++++...... ........++++++++|||||||.||+|.++|.++.....................+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (541)
T TIGR03205 165 PADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVIC 243 (541)
T ss_pred CCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEE
Confidence 011123456665543211 1122334678999999999999999999999999876544221110000112234578999
Q ss_pred ecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 009090 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (544)
Q Consensus 272 ~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (544)
..|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.++..+.+...
T Consensus 244 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------ 305 (541)
T TIGR03205 244 VLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS------------------ 305 (541)
T ss_pred eccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc------------------
Confidence 999999988775 5557889999888765 89999999999999999999999887753210
Q ss_pred HHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccC
Q 009090 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (544)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~ 429 (544)
....++ +++|.+++||+++++++.+++.+.++.++++.||+||++.+++....
T Consensus 306 -------------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 358 (541)
T TIGR03205 306 -------------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPP 358 (541)
T ss_pred -------------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCC
Confidence 000111 38999999999999999999999889999999999999987766544
Q ss_pred CCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcE
Q 009090 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 430 ~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l 509 (544)
......+++|.+.+++++++++.++ ...+++.|+.|||+++|+.++.||+++++.+.+.|.++||+|||+++++++|++
T Consensus 359 ~~~~~~~~~G~~~~~~~~~v~~~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l 437 (541)
T TIGR03205 359 EGPDKPGSIGLMLPGIELDVVSLDD-PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYF 437 (541)
T ss_pred CCCCCCCCcceeccCceeEEEecCC-CCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceE
Confidence 3333447899999999999876333 334566788999999999999999999999999898999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.+|+|++ +|++++|.+||+++.+|++|.+
T Consensus 438 ~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~ 471 (541)
T TIGR03205 438 FLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQE 471 (541)
T ss_pred EEEccccCeEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 999999999997 8999999999999999999864
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-54 Score=453.23 Aligned_cols=425 Identities=23% Similarity=0.269 Sum_probs=346.8
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
+..|+.++|.++++++|+++|+++. + +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG----D-----TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3568999999999999999999864 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccch-hhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
||+++|++++|++|..+.+++.++++.++++.+++++.. ........ ........++.+.....
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------- 145 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALL-ARVPSLKHVLTLGPVPD-------------- 145 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHh-hhcCCceEEEEeCCccc--------------
Confidence 999999999999999999999999999999999998763 22221111 11122333444333211
Q ss_pred eHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 199 SWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 199 ~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
..++..... ..........++++++++|||||||.||+|.++|.++...+......+ .+..++++++..|++
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~ 219 (524)
T PRK06188 146 -GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLS 219 (524)
T ss_pred -hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCch
Confidence 011111000 001111122456699999999999999999999999999888776665 778899999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 277 HILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 277 ~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
|..++. .+.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++.....
T Consensus 220 ~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------- 276 (524)
T PRK06188 220 HAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR---------------------- 276 (524)
T ss_pred hhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc----------------------
Confidence 988864 4567889999999887 8999999999999999999999998876532110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC----
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
.. .++++|.+++||++++++..+.+.+.++..+++.||+||++..+.......
T Consensus 277 ---------------~~--------~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 333 (524)
T PRK06188 277 ---------------TR--------DLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPD 333 (524)
T ss_pred ---------------CC--------CCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccc
Confidence 01 123899999999999999988888888989999999999977665543322
Q ss_pred -ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEE
Q 009090 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510 (544)
Q Consensus 432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~ 510 (544)
.....++|+|++++++++++ +++ .+++.|+.|||+++|+.++.||++++..+...+.+|||+|||+|++++||+++
T Consensus 334 ~~~~~~~~G~p~~g~~v~i~~-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~ 410 (524)
T PRK06188 334 DPKRLTSCGRPTPGLRVALLD-EDG--REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYY 410 (524)
T ss_pred ccccCCccccccCCcEEEEEc-CCC--CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEE
Confidence 22346899999999999998 543 45667889999999999999999999999988999999999999999999999
Q ss_pred EEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 511 ~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+.||.+|+|++ +|++++|.+||++|.+||+|.+
T Consensus 411 ~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~ 443 (524)
T PRK06188 411 IVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQ 443 (524)
T ss_pred EEeccccceec-CCEEECHHHHHHHHHhCCCeeE
Confidence 99999999997 8999999999999999999864
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=453.61 Aligned_cols=436 Identities=19% Similarity=0.208 Sum_probs=341.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|.++++++|+++|++.. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+.++++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 44558999999999999999999743 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh-----HhhcccccccccccEEEEecCCchHHHHHHhhC
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (544)
+||+++|++++|+++..+.+++.++++.++++++|++++... .+...........+.++.++...... .
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 151 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------P 151 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------C
Confidence 999999999999999999999999999999999999876421 11111111112233444433111000 0
Q ss_pred CceeeeHHHHHhccccccc---ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEE
Q 009090 194 GIKPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (544)
......+.++......... ......++++++++|||||||.||+|.++|+++...+..+...+ ++..+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l 226 (540)
T PRK06164 152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL 226 (540)
T ss_pred CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0000011111110000000 01223568899999999999999999999999999888777666 678999999
Q ss_pred EecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 009090 271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (544)
Q Consensus 271 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (544)
+.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+... .
T Consensus 227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~---------------- 289 (540)
T PRK06164 227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E---------------- 289 (540)
T ss_pred EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c----------------
Confidence 99999999999878888999999998876 89999999999999999999999998865410 0
Q ss_pred HHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcC-CCCCHHHHHHHHHhcCCceEEeeccccccCceeecc
Q 009090 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (544)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 428 (544)
. ...+++|.+.++| .+...++.+++.+. ++++++.||+||++.+++...
T Consensus 290 ---------------------~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~ 339 (540)
T PRK06164 290 ---------------------R--------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP 339 (540)
T ss_pred ---------------------c--------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence 0 0113788877665 55566677777765 899999999999988766554
Q ss_pred CCC--ccccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEc
Q 009090 429 PDE--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504 (544)
Q Consensus 429 ~~~--~~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~ 504 (544)
... .....+.|.+. +++++++++ +++ ..+++.|+.||||++|+.++.||+++++.+.+.| .+|||+|||+|+++
T Consensus 340 ~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~ 417 (540)
T PRK06164 340 ATDPVSVRIEGGGRPASPEARVRARD-PQD-GALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTR 417 (540)
T ss_pred CCCCCcceeccCccccCCCeEEEEec-CCC-CcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEc
Confidence 332 12224567765 799999998 333 3566788999999999999999999999999888 68999999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++|.+++.||.+|+|++ +|++++|.+||++|.+||+|.|
T Consensus 418 ~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~ 456 (540)
T PRK06164 418 GDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAA 456 (540)
T ss_pred CCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCcee
Confidence 99999999999999997 7999999999999999999874
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=452.50 Aligned_cols=427 Identities=20% Similarity=0.230 Sum_probs=342.6
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.++|+.+++ |+++|+++. + +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG----E-----RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 5689999999887 999999853 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh----hHhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++++.+.....++.++++.+++++++++.... ................++..... .
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence 999999888777777788899999999999999986531 11111111112233333332221 1
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
...+.++..... .........++++++++|||||||.||+|.+||.++...+......+ .+..+|++++.+|++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 233 (536)
T PRK10946 160 EHSLDDAINHPA-EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA 233 (536)
T ss_pred CccHHHHhhCcc-cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence 123334333221 11222344678999999999999999999999999999888766655 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.++..|+++++.+. ++..++..++++++|++.++|.++..+++........
T Consensus 234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~----------------- 296 (536)
T PRK10946 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR----------------- 296 (536)
T ss_pred ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence 9888763 5667899999988765 8889999999999999999999999887543211000
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
...+++|.+++||+++++.+.+.+.+.+++++++.||+||++............
T Consensus 297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 350 (536)
T PRK10946 297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER 350 (536)
T ss_pred --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence 011389999999999999999999999999999999999965443322222223
Q ss_pred ccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
...++|.|+ |++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .++||+|||+|++|++|++++
T Consensus 351 ~~~~~G~p~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~ 427 (536)
T PRK10946 351 IFTTQGRPMSPDDEVWVAD-ADG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV 427 (536)
T ss_pred ccccCCcccCCCceEEEEC-CCC--CCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence 347899998 799999988 444 456678999999999999999999999999888 689999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.+|++++ +|++++|.+||++|.+||+|.+
T Consensus 428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~ 459 (536)
T PRK10946 428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIH 459 (536)
T ss_pred eccccceeec-CCEEEcHHHHHHHHHhCCCcce
Confidence 9999999996 8999999999999999999874
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=498.45 Aligned_cols=414 Identities=21% Similarity=0.273 Sum_probs=346.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|.++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++++.+++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA----R-----YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++.+++.++++.+++++++++......+... ... .+...+
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~-------------------- 581 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYN-------------------- 581 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeecc--------------------
Confidence 999999999999999999999999999999999988765443211 000 111111
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
...... .........++++++++|||||||.||||+++|+++.+.+......+ ++.++|+++...|++|..+
T Consensus 582 -~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 582 -APLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred -cccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 000000 00111223578999999999999999999999999999988877766 7889999999999999998
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.++..|+++++.+. ++..+.+.++++++|++.++|+++..+++.......
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~--------------------- 712 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA--------------------- 712 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence 8888889999999999763 789999999999999999999999887653211100
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~----- 431 (544)
....+++|.+++||+++++++.+.|.+.+++++++.||+||++..++......
T Consensus 713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 770 (1296)
T PRK10252 713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA 770 (1296)
T ss_pred ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence 00113899999999999999999999988999999999999987766543322
Q ss_pred -ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-c------CCccccCceEEE
Q 009090 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQI 503 (544)
Q Consensus 432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~------~g~~~TGDlg~~ 503 (544)
.....++|+|+++++++|+| +.+ .+++.|+.|||+|+|+.++.||+++++.+.+.| . ++||+|||+|++
T Consensus 771 ~~~~~~~iG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 771 VRGSSVPIGYPVWNTGLRILD-ARM--RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred cCCCCCCcccccCCCEEEEEC-CCC--CCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 12235799999999999998 443 456778999999999999999999999999888 2 249999999999
Q ss_pred ccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 504 ~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||.++++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~ 887 (1296)
T PRK10252 848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQ 887 (1296)
T ss_pred cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccc
Confidence 999999999999999998 7999999999999999999975
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=453.47 Aligned_cols=444 Identities=24% Similarity=0.328 Sum_probs=335.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.+.|+..+..+|+++|+++. + .++||.||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 89 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG 89 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 346899999999999999999753 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccc------cccccEEEEecCCchHHHHHHhhCC
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS------AQRLRVMVCFTSLTAEQKEMAVQTG 194 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (544)
|+++|++++|+++..+.+++.++|+.++++++|+++............. ......++.................
T Consensus 90 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
T PLN02479 90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALG 169 (567)
T ss_pred HHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccc
Confidence 9999999999999999999999999999999999887654432211100 0011223333221100000000011
Q ss_pred ceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecC
Q 009090 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (544)
.....|++++...............+++++++|||||||.||+|.+||+++..........+ .+..++++++..|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p 244 (567)
T PLN02479 170 KGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLP 244 (567)
T ss_pred cCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecc
Confidence 23345666654321111111122334678899999999999999999999876655443333 5778899999999
Q ss_pred hHHHHHHHHHHH-HHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 275 LAHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 275 ~~~~~g~~~~~~-~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
++|..++...+. .+..|.++++...++..+.+.++++++|++.++|.++..|.+.......
T Consensus 245 ~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 306 (567)
T PLN02479 245 MFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI------------------ 306 (567)
T ss_pred hhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc------------------
Confidence 999998765444 4666777666656999999999999999999999999988653211000
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC---
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--- 430 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~--- 430 (544)
...+++|.++++|+++++.+.++|.+. +.++++.||+||+++.+......
T Consensus 307 --------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~ 359 (567)
T PLN02479 307 --------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEW 359 (567)
T ss_pred --------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccc
Confidence 011378999999999999999999876 88999999999986554332100
Q ss_pred -------CccccCccCcCccCce-EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEE
Q 009090 431 -------EMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502 (544)
Q Consensus 431 -------~~~~~~~~G~~~~~~~-v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~ 502 (544)
......+.|.+.++.+ +++++.+.....+.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|+
T Consensus 360 ~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~ 439 (567)
T PLN02479 360 DSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGV 439 (567)
T ss_pred cccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEE
Confidence 0111135677778775 77877222333332223679999999999999999999999999999999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++|+++++||.+|+|++ +|++|+|.+||++|.+||.|++
T Consensus 440 ~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~ 480 (567)
T PLN02479 440 KHPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLE 480 (567)
T ss_pred EcCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccce
Confidence 9999999999999999997 8999999999999999999875
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=449.60 Aligned_cols=440 Identities=23% Similarity=0.294 Sum_probs=344.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
-+...++.++|+++++++|++++++.. .++..+++||.||.++++++|++|.+.|+++||+|+++++|+.+++++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~ 80 (542)
T PRK06018 6 QDWPLLCHRIIDHAARIHGNREVVTRS-----VEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEA 80 (542)
T ss_pred hcCCCCHHHHHHHHHHhCCCceEEEee-----ccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHH
Confidence 345679999999999999999999742 123457899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
++||+++|++++|+++..+.+++.++++.++++.++++.+....+.+.... ......++...+.... ........
T Consensus 81 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 155 (542)
T PRK06018 81 WYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHM----PQTTLKNA 155 (542)
T ss_pred HHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEecccccc----cccCcccc
Confidence 999999999999999999999999999999999999998776555433221 2233344433321100 00000122
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHH-HHH-hhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
..+.+++.... .........++++++++|||||||.||+|.+||++.+ ... ......+ ++..+|+++...|+
T Consensus 156 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~ 229 (542)
T PRK06018 156 VAYEEWIAEAD-GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPL 229 (542)
T ss_pred ccHHHHhccCC-cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCH
Confidence 34555554321 1122233466789999999999999999999999743 222 2222222 57889999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 276 AHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 276 ~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
+|..++...+.++..|+++++... ++..+++.++++++|++.++|+++..+++......
T Consensus 230 ~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 290 (542)
T PRK06018 230 FHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------- 290 (542)
T ss_pred HHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-------------------
Confidence 999988777778899999988753 78899999999999999999999988865332110
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC--
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-- 431 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-- 431 (544)
.++ +++|.++++|+++++++.++|++ ++.++++.||+||++.+++......
T Consensus 291 ------------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~ 343 (542)
T PRK06018 291 ------------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPF 343 (542)
T ss_pred ------------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCcccc
Confidence 011 38999999999999999999999 8999999999999997765432110
Q ss_pred --------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEE
Q 009090 432 --------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (544)
Q Consensus 432 --------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~ 502 (544)
.....++|+|.+++++++++ +++...+.+.+..|||+++|+.++.||++.. ...+ .+|||+|||+|+
T Consensus 344 ~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~ 419 (542)
T PRK06018 344 SKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVAT 419 (542)
T ss_pred ccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEE
Confidence 01125789999999999998 6655555544468999999999999999842 2223 679999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++|++++.||.+|+|++ +|.+++|.+||+++.+||+|+|
T Consensus 420 ~~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~ 460 (542)
T PRK06018 420 IDAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAE 460 (542)
T ss_pred EcCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCccee
Confidence 9999999999999999996 8999999999999999999875
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-54 Score=534.21 Aligned_cols=414 Identities=19% Similarity=0.260 Sum_probs=349.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|+.+++++|+++|+++. + +++||+||.++++++|+.|++.|+++|++|+++++|++++++++
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence 34479999999999999999999875 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++++.++++++|++......+.... ...++.++...
T Consensus 3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~------~~~~~~~~~~~--------------- 3221 (3956)
T PRK12467 3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDRLD--------------- 3221 (3956)
T ss_pred HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc------CCceeeecchh---------------
Confidence 999999999999999999999999999999999999877654431110 11112221110
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
........+.....++++++++|||||||.||||+++|+++.+.+......+ +++++|+++.+.|+.|.
T Consensus 3222 ------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 3290 (3956)
T PRK12467 3222 ------LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFD 3290 (3956)
T ss_pred ------hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHh
Confidence 0000111222345788999999999999999999999999999998877776 78999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+....+.++..|+++++.+. ++..+.+.++++++|++..+|+++..+++....
T Consensus 3291 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 3347 (3956)
T PRK12467 3291 GAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG----------------------- 3347 (3956)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-----------------------
Confidence 988888899999999999874 789999999999999999999999887542110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCc--
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-- 432 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~-- 432 (544)
...++||.+++||+++++++.+.|.+.+ ++.+++.||+||++..++.......
T Consensus 3348 ------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 3403 (3956)
T PRK12467 3348 ------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAV 3403 (3956)
T ss_pred ------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccc
Confidence 0123899999999999999999998877 5789999999999987765433221
Q ss_pred --cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCC-------ccccCceEE
Q 009090 433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQ 502 (544)
Q Consensus 433 --~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g-------~~~TGDlg~ 502 (544)
....++|+|++|++++|+| +++ .+++.|+.|||+|+|+.+++||+++|+.|.+.| .++ ||+|||+|+
T Consensus 3404 ~~~~~~~iG~p~~~~~~~v~d-~~~--~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467 3404 CEAPYAPIGRPVAGRSIYVLD-GQL--NPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred cCCCCCCCccccCCCEEEEEC-CCC--CCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhe
Confidence 1236799999999999998 443 567788999999999999999999999999998 443 699999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++||.+++.||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 3481 ~~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~ 3521 (3956)
T PRK12467 3481 YRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVRE 3521 (3956)
T ss_pred ecCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccce
Confidence 9999999999999999998 7999999999999999999975
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-53 Score=444.05 Aligned_cols=428 Identities=22% Similarity=0.237 Sum_probs=347.4
Q ss_pred CcccHHHHHHHH-HHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~-a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+.+...++++++ ++.+||++|++.. + ..+||.||.++++++|++|.+.|+++|++|+++++|+.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~ 72 (508)
T TIGR02262 2 KYNAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAF 72 (508)
T ss_pred cchHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 356677888887 6779999998753 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|+++..+.+++.++++.++++++|++.+....+.+... ..+....++....... ...
T Consensus 73 ~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~ 140 (508)
T TIGR02262 73 LGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEV 140 (508)
T ss_pred HHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------ccc
Confidence 9999999999999999999999999999999999999876655433221 1223334444332211 122
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhh-hhhhhcccCCCCCCcEEEEecChHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
++.++..... .........++++++++|||||||.||+|.++|+++...+... ...+ ++..+|+++...|++|
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 214 (508)
T TIGR02262 141 QLAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFF 214 (508)
T ss_pred cHHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHH
Confidence 3444433221 1122234467899999999999999999999999998776542 2222 6788999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.+++.. ...++..|+++++.+. ++..++..++++++|.+.++|.++..++......
T Consensus 215 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~--------------------- 273 (508)
T TIGR02262 215 AYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP--------------------- 273 (508)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc---------------------
Confidence 999865 5557889999988765 7899999999999999999999887764321000
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 434 (544)
...++++|.++++|+++++++.+.|++.+++++++.||+||++.++..+..... .
T Consensus 274 ------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~ 328 (508)
T TIGR02262 274 ------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-R 328 (508)
T ss_pred ------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-C
Confidence 001138999999999999999999999999999999999999987665533322 3
Q ss_pred cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEee
Q 009090 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514 (544)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR 514 (544)
.+++|.|.+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+...|.++||+|||+++++++|.+++.||
T Consensus 329 ~~~~G~~~~g~~v~i~d-~~~--~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR 405 (508)
T TIGR02262 329 YGTSGKPVPGYRLRLVG-DGG--QDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGR 405 (508)
T ss_pred CCCcCCCCCCcEEEEEC-CCC--CCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEecc
Confidence 36899999999999998 544 455677899999999999999999999999989999999999999999999999999
Q ss_pred ccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 515 KKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 515 ~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|+|++ +|.+++|.+||+.|.++|+|.+
T Consensus 406 ~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~ 434 (508)
T TIGR02262 406 TDDMLKV-SGIYVSPFEIESALIQHPAVLE 434 (508)
T ss_pred ccceeee-CCEEECHHHHHHHHHhCCCeeE
Confidence 9999997 7999999999999999999864
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=450.20 Aligned_cols=442 Identities=23% Similarity=0.332 Sum_probs=340.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..+++.++|...++.+|+++|+++. + +.+||.||.+++.++|++|.+.|+++||+|+++++|+.++++++|
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999864 3 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEec--CCc--hHHHH-------
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLT--AEQKE------- 188 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~------- 188 (544)
||+++|++++|++|..+.+++.++++.++++++++++.....+...... .....++... ... +....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence 9999999999999999999999999999999999988654443222110 0111111110 000 00000
Q ss_pred ---HHhh--CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC
Q 009090 189 ---MAVQ--TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM 263 (544)
Q Consensus 189 ---~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~ 263 (544)
.... .......|+.+.... ...........+++++++|||||||.||+|.++|+++..........+ ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~ 246 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---YNCK 246 (563)
T ss_pred cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---cCCC
Confidence 0000 000000122221111 011111112357899999999999999999999999876543322211 0012
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHH
Q 009090 264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341 (544)
Q Consensus 264 ~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~ 341 (544)
..+++++++.|++|.+++.. ...++..|+++++.+. ++..+++.++++++|++.++|+++..+++....
T Consensus 247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------- 317 (563)
T PRK06710 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL--------- 317 (563)
T ss_pred CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc---------
Confidence 34568899999999998865 4457889999998776 899999999999999999999999887542110
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeecccccc
Q 009090 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421 (544)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~ 421 (544)
...++ +++|.+++||+++++++.+++.+.++.++++.||+||++
T Consensus 318 ----------------------------~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 361 (563)
T PRK06710 318 ----------------------------KEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESS 361 (563)
T ss_pred ----------------------------ccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCc
Confidence 00111 279999999999999999999998899999999999998
Q ss_pred CceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceE
Q 009090 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (544)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg 501 (544)
.++...........+++|.+.+++.+++++ +++ ..+++.|+.|||+++|+.++.||+++++.+...+.+|||+|||+|
T Consensus 362 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~ 439 (563)
T PRK06710 362 PVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LET-GEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG 439 (563)
T ss_pred cccccCcccccccCCccCCCCCCCeEEEEE-CCC-CccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceE
Confidence 765544332333347899999999999998 333 356677889999999999999999999999988899999999999
Q ss_pred EEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 502 ~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++++|.+++.||.+|+|++ +|.+|+|.+||++|.+||+|.+
T Consensus 440 ~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~ 481 (563)
T PRK06710 440 YMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQE 481 (563)
T ss_pred EEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceee
Confidence 99999999999999999997 7999999999999999999874
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=446.51 Aligned_cols=411 Identities=21% Similarity=0.238 Sum_probs=332.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.+.|..+++++|+++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD----D-----GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC----C-----CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4678999999999999999998753 2 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+.+|++++|+++.++.+++.++++.++++.+++++.....+.... ..++.++....
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~--------------- 161 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA--------------- 161 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence 99999999999999999999999999999999999887665442211 11222211100
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHH--HhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF--VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~--~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
... .....+...++.++++|||||||.||+|.++|...... .......+ .+..+|+++...|++|
T Consensus 162 --~~~------~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h 228 (516)
T PRK13383 162 --GAE------ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFH 228 (516)
T ss_pred --hhh------cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcc
Confidence 000 00011123456789999999999999999999743211 11111122 5778999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
.+|+...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+......
T Consensus 229 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 286 (516)
T PRK13383 229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR---------------------- 286 (516)
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc----------------------
Confidence 9999877778999999988765 89999999999999999999999988764321100
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccC
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 436 (544)
.. ...+++|.+++||+++++++.++|.+.++..+++.||+||++..+...........+
T Consensus 287 -------------~~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 345 (516)
T PRK13383 287 -------------AR--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPE 345 (516)
T ss_pred -------------cc--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCC
Confidence 00 011389999999999999999999999999999999999998766554433334457
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecc
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~ 516 (544)
++|+|.++++++|++ +++ .+++.|+.|||+++|+.++.+|++++. ..+.+|||+|||+|++|++|++++.||.+
T Consensus 346 ~~G~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~ 419 (516)
T PRK13383 346 TVGKPVAGCPVRILD-RNN--RPVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGRED 419 (516)
T ss_pred cccCCCCCcEEEEEC-CCC--CCCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEecccc
Confidence 899999999999998 444 356677899999999999999998753 33468999999999999999999999999
Q ss_pred ceeecCCCceechHhHHHHhhcCCCccC
Q 009090 517 NLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 517 d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++ +|.+++|.+||++|.+||+|.+
T Consensus 420 ~~i~~-~G~~v~~~eiE~~l~~~~~v~~ 446 (516)
T PRK13383 420 DMIIS-GGENVYPRAVENALAAHPAVAD 446 (516)
T ss_pred ceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 99997 8999999999999999999864
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=448.38 Aligned_cols=415 Identities=20% Similarity=0.213 Sum_probs=327.8
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEecCchhHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl-~~gd~V~l~~~n~~~~~~~~lA 120 (544)
.|+.++|..++ +|+++|+++. + ..+||.||.++++++|..|.+.|+ .+||+|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57888888764 7999999764 3 479999999999999999999999 8999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++.+++.++++.++++++|++++....+.+.. ..... ++.++.. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence 9999999999999999999999999999999999887665443221 11222 2222211 12
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.+++..... ..+.....++++++++|||||||.||+|.++|.++......+...+ ++..+|+++..+|++|..+
T Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 205 (540)
T PRK13388 132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA 205 (540)
T ss_pred hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence 233221111 1111234678999999999999999999999999988877766665 7888999999999999998
Q ss_pred HHHHH-HHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 281 RVIEE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 281 ~~~~~-~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
+...+ .++..|+++++.+. ++..+++.++++++|++..+|..+..++......
T Consensus 206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~------------------------- 260 (540)
T PRK13388 206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERP------------------------- 260 (540)
T ss_pred hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCc-------------------------
Confidence 87644 47889999988765 8899999999999999999999887765321000
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCcc
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~ 438 (544)
. ....+++.+ + |+.+++.+.+.|.+.+++++++.||+||++.++.... ....+++
T Consensus 261 -----------~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v 315 (540)
T PRK13388 261 -----------D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI 315 (540)
T ss_pred -----------c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence 0 000256643 3 6677888888898888999999999999987665432 1234789
Q ss_pred CcCccCceEEEee---------cCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhcccCCccccCceEEEccCCc
Q 009090 439 GPVSVYSELRLEE---------VPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508 (544)
Q Consensus 439 G~~~~~~~v~i~~---------~~~~~~~~~~~g~~Gei~v~-~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~ 508 (544)
|+|.+++++.-.+ +++++....+.++.|||+++ |+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus 316 G~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~ 395 (540)
T PRK13388 316 GRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGW 395 (540)
T ss_pred CCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCc
Confidence 9999997653110 01112112234568999998 9999999999999999989899999999999999999
Q ss_pred EEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 509 l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++.||.+|+|++ +|++|+|.+||++|.+||+|.+
T Consensus 396 l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~ 430 (540)
T PRK13388 396 IYFAGRTADWMRV-DGENLSAAPIERILLRHPAINR 430 (540)
T ss_pred EEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceE
Confidence 9999999999997 8999999999999999999864
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=448.48 Aligned_cols=443 Identities=24% Similarity=0.344 Sum_probs=344.5
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..++.++|.++++++|+++|+++. + +.+||.||.+++.++|+.|. +.|+++||+|+++++|+.++++++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 457999999999999999999754 3 58999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCc--h-HH----------
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A-EQ---------- 186 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~---------- 186 (544)
||+++|++++|++|.++.+++.++++.++++++++++.....+....... ....++...... . ..
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999887655443322111 112222211000 0 00
Q ss_pred -HH-HHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCC
Q 009090 187 -KE-MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (544)
Q Consensus 187 -~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (544)
.. ...........+.+................++++++++|||||||.||+|.++|.++...+......+.... .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence 00 000000112334444433222222233456789999999999999999999999999887765444331100 122
Q ss_pred C-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchH
Q 009090 265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (544)
Q Consensus 265 ~-~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~ 340 (544)
. ++.+++..|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.++..+.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------- 322 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--------- 322 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence 3 467788899999999865 4556677777766553 88999999999999999999999988764211
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccc
Q 009090 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~ 420 (544)
...++++ ++|.+++||+++++.+.+.|++.+++.+++.||+||+
T Consensus 323 ----------------------------~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 366 (560)
T PRK08751 323 ----------------------------FDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET 366 (560)
T ss_pred ----------------------------cCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence 1112222 8999999999999999999999889999999999999
Q ss_pred cCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCc
Q 009090 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD 499 (544)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGD 499 (544)
+..++.+........+++|.+.+++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus 367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 443 (560)
T PRK08751 367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAG--TVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443 (560)
T ss_pred CCceecccccccccCCCcCccCCCceEEEEC-CCC--CCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence 9877665433333447899999999999998 544 345677899999999999999999999988887 679999999
Q ss_pred eEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 500 lg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+++++|++++.||.+|+|++ +|++++|.+||++|..||+|.+
T Consensus 444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~ 487 (560)
T PRK08751 444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLE 487 (560)
T ss_pred eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeee
Confidence 9999999999999999999997 7999999999999999999864
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-53 Score=444.59 Aligned_cols=413 Identities=20% Similarity=0.277 Sum_probs=330.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
...++.++|++++. ++++++++. + +++||.||.++++++|++|.+. |++++++|+++++|++++++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 35678999988875 788888753 3 5899999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|+++..+.+++.++++.++++++|++++....+.... ... .++..+. .
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~ 130 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P 130 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence 999999999999999999999999999999999999987765432221 111 2222221 1
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.|.+++..............++++++++|||||||.||+|.+||+++......+...+ ++..+|+++...|++|.
T Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~ 205 (529)
T PRK07867 131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS 205 (529)
T ss_pred cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence 2333332211111222345678999999999999999999999999988887776665 67889999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 279 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
.++.. .+.++..|+++++.+. ++..+++.++++++|++.++|..+..++......
T Consensus 206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~----------------------- 262 (529)
T PRK07867 206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP----------------------- 262 (529)
T ss_pred HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc-----------------------
Confidence 99876 4457889999988765 8999999999999999999999988765321100
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccC
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 436 (544)
. ...+++|. ++||+.+++.+ .+|.+.+|+++++.||+||+++.+...+. ...+
T Consensus 263 ---------~-------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~ 315 (529)
T PRK07867 263 ---------D-------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG 315 (529)
T ss_pred ---------c-------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence 0 00126774 56888887765 66777789999999999999866543321 2336
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCC------------CCeEEE-ecCCccccccCChhhhhhcccCCccccCceEEE
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~------------~Gei~v-~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (544)
++|.+.++ +++++ ++.+ .+++.++ .|||++ +|+.++.||+++++.+.+.|.+|||+|||+|++
T Consensus 316 ~~g~~~~~--~~i~~-~~~~-~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~ 391 (529)
T PRK07867 316 ALGPLPPG--VAIVD-PDTG-TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR 391 (529)
T ss_pred CcCCCCCC--EEEEE-CCCC-CCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence 89999998 66666 3222 2344455 899999 999999999999999998899999999999999
Q ss_pred ccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 504 ~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++|++++.||.+|+|++ +|++++|.+||++|.+||+|+|
T Consensus 392 ~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 431 (529)
T PRK07867 392 DADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATE 431 (529)
T ss_pred eCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeE
Confidence 999999999999999998 8999999999999999999875
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=443.74 Aligned_cols=402 Identities=24% Similarity=0.298 Sum_probs=324.8
Q ss_pred HHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEE
Q 009090 49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC 128 (544)
Q Consensus 49 ~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 128 (544)
+.+++.+||++|+++. .++ +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4677889999998752 012 589999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc
Q 009090 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 208 (544)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (544)
+|+++.++.+++.++++.++++++|+++....... . ..+++++.....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence 99999999999999999999999999865432100 0 001111111110
Q ss_pred c-cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHH
Q 009090 209 V-NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY 286 (544)
Q Consensus 209 ~-~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~ 286 (544)
. ..........+++++++|||||||.||+|.++|+++...+..+...+ ....+|++++.+|++|.+++.. ...
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 0 01111233567899999999999999999999999988777665544 5778999999999999999876 445
Q ss_pred HHHcCcEEEEecC-ChhhHHHHhh--hhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcC
Q 009090 287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (544)
Q Consensus 287 ~l~~G~~~~~~~~-~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (544)
++..|+++++.++ ++..++..+. ++++|+++++|.++..+.....
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 245 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG-------------------------------- 245 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence 6888999988766 7788887775 4899999999999987753210
Q ss_pred CcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC--CccccCccCcC
Q 009090 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV 441 (544)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~ 441 (544)
....+ .+++|.+++||++++....+.+.+. ++++++.||+||++.+....... .....+++|.+
T Consensus 246 -----~~~~~--------~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~ 311 (488)
T PRK09088 246 -----FDAAA--------LRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP 311 (488)
T ss_pred -----cCccc--------cccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence 00001 1389999999999999988887765 89999999999998754332211 12244789999
Q ss_pred ccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceee
Q 009090 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (544)
Q Consensus 442 ~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~ 520 (544)
.|+++++|++ +++ .+++.|+.|||+++|++++.||+++++.+.+.+ .+|||+|||+|+++++|.+++.||.+|+|+
T Consensus 312 ~~~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~ 388 (488)
T PRK09088 312 TPTVQTRVVD-DQG--NDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI 388 (488)
T ss_pred CCCcEEEEEC-CCC--CCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence 9999999998 443 345677899999999999999999999988877 589999999999999999999999999999
Q ss_pred cCCCceechHhHHHHhhcCCCccC
Q 009090 521 ISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 521 ~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+ +|.+++|.+||++|.++|+|++
T Consensus 389 ~-~G~~i~~~~iE~~l~~~~~v~~ 411 (488)
T PRK09088 389 S-GGENVYPAEIEAVLADHPGIRE 411 (488)
T ss_pred e-CCEEECHHHHHHHHHhCCCcce
Confidence 7 8999999999999999999864
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=447.61 Aligned_cols=442 Identities=22% Similarity=0.314 Sum_probs=343.1
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
+.++.++|+.+++++|+++|++.. + +.+||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 3 479999999999999999984 899999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCch--HHHHH--------
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEM-------- 189 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------- 189 (544)
||+++|++++|++|..+.+++.++++.+++++++++++....+.+.... .....++....... .....
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999987654433221111 01111111110000 00000
Q ss_pred -H----hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCC
Q 009090 190 -A----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264 (544)
Q Consensus 190 -~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 264 (544)
. ........++.+................++++++++|||||||.||+|.++|.++...+......+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence 0 00000111222222222111122233467899999999999999999999999998766543322210 0134
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHH
Q 009090 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341 (544)
Q Consensus 265 ~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~ 341 (544)
.++.++..+|++|.+++.. .+.++..|+++++... ++..++..++++++|.+.++|.++..+.+....
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--------- 319 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF--------- 319 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence 4678889999999998765 5556788888777643 788899999999999999999999887642110
Q ss_pred HHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeecccccc
Q 009090 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421 (544)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~ 421 (544)
...++ +++|.+++||+++++.+.++|++.+|+++++.||+||++
T Consensus 320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 00111 389999999999999999999998899999999999999
Q ss_pred CceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceE
Q 009090 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (544)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg 501 (544)
..+..+..+.....+++|.|.|++++++++ +++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|
T Consensus 364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 440 (560)
T PRK08974 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDG--NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA 440 (560)
T ss_pred ceeeccCCCCcccCCccccCcCCCEEEEEC-CCC--CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence 877766554444457899999999999998 443 45677889999999999999999999999888889999999999
Q ss_pred EEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 502 ~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++++|.+++.||.+|+|++ +|.+++|.+||++|.+||+|++
T Consensus 441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~ 482 (560)
T PRK08974 441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLE 482 (560)
T ss_pred EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeE
Confidence 99999999999999999997 7999999999999999999864
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=448.43 Aligned_cols=445 Identities=21% Similarity=0.273 Sum_probs=344.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
.+....++.++|+++++.+|+++|+.+. + +.+||.||.+++.++|..|.+.|+++|++|+++++|++++++
T Consensus 28 ~~~~~~~l~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~ 98 (567)
T PRK06178 28 YPHGERPLTEYLRAWARERPQRPAIIFY----G-----HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHI 98 (567)
T ss_pred CCcCcccHHHHHHHHHHHCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHH
Confidence 3345578999999999999999999764 3 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCch--HHHHHHh---
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEMAV--- 191 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--- 191 (544)
+++||+++|++++|++|..+.+++.++++.++++++++++.....+.+..... ....++....... .......
T Consensus 99 ~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 176 (567)
T PRK06178 99 VFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDS 176 (567)
T ss_pred HHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccc
Confidence 99999999999999999999999999999999999999988766554433211 2222322211100 0000000
Q ss_pred --hCCceeeeHHHHHhccc--ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCc
Q 009090 192 --QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (544)
Q Consensus 192 --~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 267 (544)
........+.++..... ..........++++++++|||||||.||+|.+||.++........... ..+..+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d 252 (567)
T PRK06178 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDS 252 (567)
T ss_pred cccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCc
Confidence 00000111222222111 111122335678999999999999999999999999887665443221 2567899
Q ss_pred EEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 268 ~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
+++..+|++|.+|+.. ++.+++.|+++++.++ ++..++..++++++|.+.++|..+..+.+...
T Consensus 253 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~-------------- 318 (567)
T PRK06178 253 VFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR-------------- 318 (567)
T ss_pred EEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--------------
Confidence 9999999999999864 6668999999999886 89999999999999999999988877643210
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEE--EcCCCCCHHHHHHHHHhcCCceEE-eeccccccC
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCG 422 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~~~~i~~-~YG~tE~~~ 422 (544)
....++ +++|.+. .+++.+++++.+.|++.+|..++. .||+||++.
T Consensus 319 -----------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~ 367 (567)
T PRK06178 319 -----------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHT 367 (567)
T ss_pred -----------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccc
Confidence 000111 2566654 345899999999999998877664 799999987
Q ss_pred ceeeccC---CC---ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccc
Q 009090 423 PTTVCFP---DE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH 496 (544)
Q Consensus 423 ~~~~~~~---~~---~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~ 496 (544)
.+..... .. ...++++|.|+||++++++| ++ ...+++.|+.|||+++|+.++.||+++++.+...|.+|||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d-~~-~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~ 445 (567)
T PRK06178 368 CDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICD-FE-TGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLH 445 (567)
T ss_pred cceeccccccCccccccCCcccccccCCcEEEEEc-CC-CCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCcee
Confidence 6544321 11 12346799999999999998 33 33556678899999999999999999999999888899999
Q ss_pred cCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|++++||+++++||.+|+|++ +|.+++|.+||+++.++|+|.|
T Consensus 446 TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~ 492 (567)
T PRK06178 446 TGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLG 492 (567)
T ss_pred ecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 9999999999999999999999997 7999999999999999999874
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=452.67 Aligned_cols=429 Identities=19% Similarity=0.249 Sum_probs=333.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
.+....++.++|.++++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+.++++
T Consensus 32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~----~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~ 102 (600)
T PRK08279 32 TPDSKRSLGDVFEEAAARHPDRPALLFE----D-----QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLA 102 (600)
T ss_pred CCCCcccHHHHHHHHHHhCCCCcEEEeC----C-----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 4466789999999999999999999864 3 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
+++||+++|++++|+++.++.+++.++++.++++++|++++....+.+..... .....++..++.... .
T Consensus 103 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 171 (600)
T PRK08279 103 AWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------D 171 (600)
T ss_pred HHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------c
Confidence 99999999999999999999999999999999999999987766553322211 112222222211000 0
Q ss_pred eeeHHHHHhccccc----ccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEe
Q 009090 197 PYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (544)
Q Consensus 197 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (544)
...|.++....... .........+++++++|||||||.||+|.+||+++...+..+...+ .+.++|+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~ 246 (600)
T PRK08279 172 PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCC 246 (600)
T ss_pred cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEe
Confidence 11233333221111 1122334678999999999999999999999999999988877665 78899999999
Q ss_pred cChHHHHHHHHHHH-HHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009090 273 LPLAHILDRVIEEY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (544)
Q Consensus 273 ~p~~~~~g~~~~~~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
+|++|.+++...+. ++..|+++++.+. ++..+++.++++++|++.++|.++..+++......
T Consensus 247 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~---------------- 310 (600)
T PRK08279 247 LPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT---------------- 310 (600)
T ss_pred cCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc----------------
Confidence 99999999886554 5778888888776 88999999999999999999999887754211000
Q ss_pred HHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-ceEEeeccccccCceeeccC
Q 009090 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFP 429 (544)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~ 429 (544)
....++|.+ +|+.+++++.++|.+.++. .+++.||+||++..+. ..
T Consensus 311 -----------------------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~-~~- 357 (600)
T PRK08279 311 -----------------------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI-NV- 357 (600)
T ss_pred -----------------------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeec-cc-
Confidence 001256654 4778999999999999876 5999999999875433 22
Q ss_pred CCccccCccCcCcc----CceE---------EEeecCCCCCCCCCCCCCCeEE--EecCCccccccCChhhhhhcc----
Q 009090 430 DEMCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI---- 490 (544)
Q Consensus 430 ~~~~~~~~~G~~~~----~~~v---------~i~~~~~~~~~~~~~g~~Gei~--v~~~~v~~gy~~~~~~~~~~~---- 490 (544)
....+++|.+.+ +..+ .+.+ .++....++.|+.|||+ +.++.++.|| ++++.+.+.|
T Consensus 358 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~ 433 (600)
T PRK08279 358 --FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV 433 (600)
T ss_pred --CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence 122356776555 3322 2222 23333456778899998 6799999999 8888877665
Q ss_pred ---cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 491 ---~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.++||+|||+|++++||++++.||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 434 ~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~ 489 (600)
T PRK08279 434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEE 489 (600)
T ss_pred cCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcce
Confidence 2579999999999999999999999999998 7999999999999999999875
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=440.75 Aligned_cols=410 Identities=18% Similarity=0.217 Sum_probs=335.3
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
++.+.|++.++.+|+++|+... + +.+||.||.+++.++|..|.+.|+++||+|+++++|+.++++++|||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ----G-----QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5788999999999999998753 3 589999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (544)
++|++++|+++.++.+++.++++..++++++++.+....... .. ++.++. ...
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence 999999999999999999999999999999998765332211 11 111111 011
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH
Q 009090 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282 (544)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 282 (544)
+..... .........++++++++|||||||.||+|.++|.++...+......+ ....+++++...|++|..++.
T Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~ 198 (502)
T TIGR01734 125 AETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM 198 (502)
T ss_pred hhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence 111110 01111234678899999999999999999999999998887766554 678899999999999999888
Q ss_pred HHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 009090 283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (544)
Q Consensus 283 ~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (544)
..+.++..|+++++.+. ++..+++.+.+++++.+.++|.+++.++......
T Consensus 199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~------------------------- 253 (502)
T TIGR01734 199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN------------------------- 253 (502)
T ss_pred HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-------------------------
Confidence 78889999999998764 7889999999999999999999987664321100
Q ss_pred ccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCC----Ccc
Q 009090 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC 433 (544)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~----~~~ 433 (544)
....++++.++++|+++++++.+++.+.+ ++.+++.||+||+++........ ...
T Consensus 254 --------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01734 254 --------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY 313 (502)
T ss_pred --------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence 01124899999999999999999999988 78999999999987654433211 122
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc----CCccccCceEEEccCCcE
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~g~l 509 (544)
...++|.+.++++++|++ +++ .+++.|+.|||+++|+.++.||+++++.+...|. .+||+|||+|++|++ ++
T Consensus 314 ~~~~vg~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l 389 (502)
T TIGR01734 314 PRLPIGFAKPDMNLFIMD-EEG--EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL 389 (502)
T ss_pred CccccccccCCCEEEEEC-CCC--CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence 235799999999999998 443 4556778999999999999999999998887762 359999999999966 99
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.+|+|++ +|++|+|.+||++|.++|+|+|
T Consensus 390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~ 423 (502)
T TIGR01734 390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIES 423 (502)
T ss_pred EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccE
Confidence 999999999997 8999999999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=530.91 Aligned_cols=415 Identities=20% Similarity=0.258 Sum_probs=346.5
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+.+++++|+++|+++. + +.+||+||.++++++|+.|++.|+++|++|+++++|++++++++|
T Consensus 2001 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316 2001 RGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3458999999999999999999865 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.+++++++++.+....+... .... .+.++..
T Consensus 2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~----------------- 2128 (5163)
T PRK12316 2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD----------------- 2128 (5163)
T ss_pred HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch-----------------
Confidence 9999999999999999999999999999999999988765433110 0111 1111110
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
..+... ....+.....++++++++|||||||.||||+++|+++.+.+......+ .++++|+++.+.|++|..
T Consensus 2129 -~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 2200 (5163)
T PRK12316 2129 -AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDG 2200 (5163)
T ss_pred -hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHH
Confidence 000000 011122345789999999999999999999999999999998877766 788999999999999998
Q ss_pred HHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
++..++.++..|+++++.+. ++..+.+.++++++|++..+|+++..+.+.....
T Consensus 2201 ~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------- 2257 (5163)
T PRK12316 2201 AHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD----------------------- 2257 (5163)
T ss_pred HHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc-----------------------
Confidence 88888899999999977654 7889999999999999999999999876532110
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCc-c-
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-C- 433 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~-~- 433 (544)
...++||.+++||+++++++.+.|.+.+ +..+++.||+||++..++....... .
T Consensus 2258 -----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 2314 (5163)
T PRK12316 2258 -----------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC 2314 (5163)
T ss_pred -----------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccccc
Confidence 0012799999999999999999999876 6789999999999877655432221 1
Q ss_pred --ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--------CCccccCceEEE
Q 009090 434 --MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQI 503 (544)
Q Consensus 434 --~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~ 503 (544)
...++|+|+++++++|+| +++ .+++.|+.|||+|+|+++++||+++|+.+.+.|. ++||+|||+|++
T Consensus 2315 ~~~~~~iG~p~~~~~~~i~d-~~~--~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~ 2391 (5163)
T PRK12316 2315 GAAYVPIGRALGNRRAYILD-ADL--NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391 (5163)
T ss_pred CCCcCCcccccCCCEEEEEC-CCC--CCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEE
Confidence 125799999999999998 443 4677889999999999999999999999999882 259999999999
Q ss_pred ccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 504 ~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||.++++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 2392 ~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~ 2431 (5163)
T PRK12316 2392 RADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVRE 2431 (5163)
T ss_pred cCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccce
Confidence 999999999999999998 7999999999999999999974
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=519.25 Aligned_cols=416 Identities=20% Similarity=0.222 Sum_probs=347.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + +.+||+||.++++++|+.|++.|+++|++|++++++++++++++|
T Consensus 1572 ~~~~~~~~~~~~a~~~p~~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~l 1642 (3956)
T PRK12467 1572 LARLVHQLIEDQAAATPEAVALVFG----E-----QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLL 1642 (3956)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHH
Confidence 3468999999999999999999864 3 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.++++++|++......+... ... .++..+...
T Consensus 1643 avlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1700 (3956)
T PRK12467 1643 AILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED---------------- 1700 (3956)
T ss_pred HhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc----------------
Confidence 9999999999999999999999999999999999987655433110 011 122222110
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
.+.... ..........++++++++|||||||.||||+++|+++.+.+......+ ++..+|+++.+.|+.|..
T Consensus 1701 --~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1772 (3956)
T PRK12467 1701 --DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDV 1772 (3956)
T ss_pred --chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHH
Confidence 000000 111122345678999999999999999999999999999988876666 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
+++.++.++..|+++++.+. ++..+.+.++++++|++.++|+++..|.+.... .
T Consensus 1773 ~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~--------------------- 1830 (3956)
T PRK12467 1773 SVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-V--------------------- 1830 (3956)
T ss_pred HHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-c---------------------
Confidence 98888889999999999864 789999999999999999999999988653110 0
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCC----
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD---- 430 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~---- 430 (544)
...+++|.+++||+++++++.+.|.+.+ +..++|.||+||++..++.....
T Consensus 1831 ------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~ 1886 (3956)
T PRK12467 1831 ------------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDL 1886 (3956)
T ss_pred ------------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEecccccc
Confidence 0113899999999999999999988877 57899999999999776654322
Q ss_pred CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--------CCccccCceEE
Q 009090 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ 502 (544)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--------~g~~~TGDlg~ 502 (544)
......++|+|+++++++|+| ++ ..+++.|+.|||+|+|+++++||+++|+.+.+.|. ++||+|||+|+
T Consensus 1887 ~~~~~~~iG~p~~~~~~~vld-~~--~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~ 1963 (3956)
T PRK12467 1887 EGRDSVPIGQPIANLSTYILD-AS--LNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLAR 1963 (3956)
T ss_pred ccCCCCCcccccCCCEEEEEC-CC--CCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEE
Confidence 112236899999999999988 43 34667789999999999999999999999999882 24999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++||.++++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 1964 ~~~dG~l~~~GR~D~qVki-~G~rIel~eIE~~l~~~p~V~~ 2004 (3956)
T PRK12467 1964 YRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLREQGGVRE 2004 (3956)
T ss_pred ECCCCCEEEecccCceEEe-CeEEechHHHHHHHHhCCCcce
Confidence 9999999999999999998 7999999999999999999974
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=437.77 Aligned_cols=447 Identities=25% Similarity=0.305 Sum_probs=334.2
Q ss_pred CcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCC
Q 009090 22 GPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101 (544)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~g 101 (544)
.+.||+... .++ .++.+.|+..++.+|+++|++.. + ..+||.||.+++.++|.+|.+.|+++|
T Consensus 6 ~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~~L~~~~~~~a~~L~~~g~~~g 68 (545)
T PRK08162 6 QGLDRNAAN--YVP------LTPLSFLERAAEVYPDRPAVIHG----D-----RRRTWAETYARCRRLASALARRGIGRG 68 (545)
T ss_pred cccCccccc--ccc------CCHHHHHHHHHHHCCCCeEEEEC----C-----eEEEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455666663 332 57889999999999999999764 3 579999999999999999999999999
Q ss_pred CEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecC
Q 009090 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (544)
Q Consensus 102 d~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (544)
|+|+++++|++++++++|||+++|++++|+++..+.+++.++++.++++.++++.+....+.+... ..... ..+.++.
T Consensus 69 ~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 146 (545)
T PRK08162 69 DTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDV 146 (545)
T ss_pred CEEEEECCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEec
Confidence 999999999999999999999999999999999999999999999999999999877655433221 11111 1122221
Q ss_pred CchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccC
Q 009090 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261 (544)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~ 261 (544)
..... .........+++++.................++++++|||||||.||+|.++|+++...+......+
T Consensus 147 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~----- 218 (545)
T PRK08162 147 DDPEY---PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW----- 218 (545)
T ss_pred Ccccc---ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----
Confidence 11000 0001112334555554321111111122445789999999999999999999998766654433333
Q ss_pred CCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec-CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchH
Q 009090 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (544)
Q Consensus 262 ~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~ 340 (544)
.+..++++++.+|++|..++...+...+.|++.++.. .++..+++.++++++|++.++|.++..|++.......
T Consensus 219 ~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~----- 293 (545)
T PRK08162 219 GMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA----- 293 (545)
T ss_pred CCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc-----
Confidence 5678889999999999998876554444455554444 4999999999999999999999999988653211000
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccc
Q 009090 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~ 420 (544)
...+.+.++++|+.+++++.+.+++. ++++++.||+||+
T Consensus 294 ----------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~ 332 (545)
T PRK08162 294 ----------------------------------------GIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTET 332 (545)
T ss_pred ----------------------------------------CCccceEEEECCCCCCHHHHHHHHHh-CCceeeccccccc
Confidence 00145567889999999999998875 8999999999999
Q ss_pred cCceeeccCCC----------ccccCccCcCcc-CceEEEeecCCCCCCCCCC-C-CCCeEEEecCCccccccCChhhhh
Q 009090 421 CGPTTVCFPDE----------MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDD-P-PCGEVCVRGKTLFSGYYKNPDLTR 487 (544)
Q Consensus 421 ~~~~~~~~~~~----------~~~~~~~G~~~~-~~~v~i~~~~~~~~~~~~~-g-~~Gei~v~~~~v~~gy~~~~~~~~ 487 (544)
++.+..+.... .....+.|.+.+ +..+++++ ++.. .+++. | +.|||+++|+.++.||+++++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~ 410 (545)
T PRK08162 333 YGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLD-PDTM-QPVPADGETIGEIMFRGNIVMKGYLKNPKATE 410 (545)
T ss_pred CcceeecccccccccCCccchhhccCCCCcccCCcceEEEEc-CCCC-cccCCCCCceeEEEEecCcchhhhcCChhhhH
Confidence 76555442211 011234565544 33577777 3332 33332 3 469999999999999999999999
Q ss_pred hcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 488 ~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
..|.+|||+|||+|++|+||++++.||.+|++++ +|++|+|.+||++|.+||+|.+
T Consensus 411 ~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~ 466 (545)
T PRK08162 411 EAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLV 466 (545)
T ss_pred HHhhCCCcccCceEEEcCCccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccE
Confidence 9999999999999999999999999999999996 8999999999999999999864
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=435.73 Aligned_cols=419 Identities=18% Similarity=0.199 Sum_probs=322.6
Q ss_pred HHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEe
Q 009090 50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV 129 (544)
Q Consensus 50 ~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 129 (544)
.+|+++|+++|+++. ++. +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 467789999999764 221 5899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc
Q 009090 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209 (544)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (544)
|+++.++++++.++++.++++++++++.......... ......+....... ...++++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVG----ADLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhh----hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 9999999999999999999999999765432211110 01111111111100 1122333322110
Q ss_pred cccccCCCCCCCeEEEEecCCCCCCCceeee--ccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHH
Q 009090 210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF 287 (544)
Q Consensus 210 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 287 (544)
......++.++++|||||||.||+|.+ +|.++.......... ......+..+|+++..+|++|.+++......
T Consensus 142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~ 216 (501)
T PRK13390 142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAI-ARAFYDISESDIYYSSAPIYHAAPLRWCSMV 216 (501)
T ss_pred ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhh-HHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence 011122357999999999999999995 455544322111000 0011257789999999999999987655556
Q ss_pred HHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcc
Q 009090 288 FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366 (544)
Q Consensus 288 l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (544)
+..|+++++.+. ++..+++.++++++|++.++|.++..+.+......
T Consensus 217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------- 264 (501)
T PRK13390 217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR-------------------------------- 264 (501)
T ss_pred HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc--------------------------------
Confidence 778999988776 89999999999999999999999988764211100
Q ss_pred hHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCce
Q 009090 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446 (544)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~ 446 (544)
...++ +++|.++++|+++++++.+.+++.++.++++.||+||+++++...........+++|+|.++ +
T Consensus 265 ---~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~ 332 (501)
T PRK13390 265 ---TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-D 332 (501)
T ss_pred ---ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-e
Confidence 00111 37899999999999999999999889999999999999876554433323344789999999 7
Q ss_pred EEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc---CCccccCceEEEccCCcEEEEeeccceeecCC
Q 009090 447 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 523 (544)
Q Consensus 447 v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~---~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~ 523 (544)
+++++ +++ .+++.|+.|||+++|++++.||+++++.+.+.+. ++|++|||+|++|+||++++.||.||+|++ +
T Consensus 333 ~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~ 408 (501)
T PRK13390 333 LHICD-DDG--NELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-G 408 (501)
T ss_pred EEEEC-CCC--CCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-C
Confidence 99988 444 3567889999999999999999999999988763 679999999999999999999999999997 7
Q ss_pred CceechHhHHHHhhcCCCccC
Q 009090 524 GEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 524 g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|.+|+|.+||++|.+||+|+|
T Consensus 409 G~~v~p~eIE~~l~~~~~v~~ 429 (501)
T PRK13390 409 GVNIYPQETENALTMHPAVHD 429 (501)
T ss_pred CeeeCHHHHHHHHHhCCCeeE
Confidence 999999999999999999875
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=433.50 Aligned_cols=410 Identities=18% Similarity=0.212 Sum_probs=337.2
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.++|+++++.+|+++++... + +++||.||.++++++|..|.+.|+.+|++|+++++|+.+++++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357889999999999999998753 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++++..++++++++++..... ... .. ..+
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~---------------------~~~ 121 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PV---------------------ITL 121 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cE---------------------Eeh
Confidence 999999999999999999999999999999999987651100 001 11 111
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
+++.... ...........++++++++|||||||.||+|.++|+++...+......+ .+..+++++...|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD 196 (503)
T ss_pred HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence 1211110 0111112234678899999999999999999999999998887766555 67889999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.++...+.++..|+++++.+. ++..+++.++++++|.+..+|.+++.+.......
T Consensus 197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~--------------------- 255 (503)
T PRK04813 197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN--------------------- 255 (503)
T ss_pred HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence 988777788999999998875 7889999999999999999999987754321100
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC--
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-- 431 (544)
....+++|.++++|+++++.+.+++.+.+ +..+++.||+||++..+.......
T Consensus 256 ------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~ 311 (503)
T PRK04813 256 ------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM 311 (503)
T ss_pred ------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence 01124899999999999999999999998 788999999999986554432211
Q ss_pred --ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--CC--ccccCceEEEcc
Q 009090 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP 505 (544)
Q Consensus 432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--~g--~~~TGDlg~~~~ 505 (544)
.....++|++.++++++|++ +++ .+++.|+.|||+++|+.++.||+++++.+...|. +| ||+|||+|++ +
T Consensus 312 ~~~~~~~~~g~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~ 387 (503)
T PRK04813 312 LDQYKRLPIGYAKPDSPLLIID-EEG--TKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E 387 (503)
T ss_pred cccCCCCcccccCCCCEEEEEC-CCC--CCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence 22335799999999999998 444 3456678999999999999999999999988772 34 9999999999 8
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++++.||.+|+|++ +|++++|.+||+.+.++|+|++
T Consensus 388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~ 425 (503)
T PRK04813 388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVES 425 (503)
T ss_pred CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcce
Confidence 9999999999999997 8999999999999999999874
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=443.74 Aligned_cols=428 Identities=22% Similarity=0.290 Sum_probs=332.7
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch
Q 009090 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (544)
Q Consensus 33 ~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~ 112 (544)
.+|.+..+++++.++|+..++.+|+.. ++ +.+...++.+||.||++++.++|.+|.+.|+++||+|+++++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~ 85 (579)
T PRK09192 12 SLPRRYADFPTLVEALDYAALGEAGMN-FY-----DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG 85 (579)
T ss_pred cccccccchhhHHHHHHHhhccCCceE-EE-----ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence 456666788999999999999988654 33 233333578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCEEeecCCCCC-------hhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchH
Q 009090 113 QWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE 185 (544)
Q Consensus 113 ~~~~~~lA~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (544)
+++++++||+++|++++|+++..+ .+++.++++.++++++|+++.....+....... .. .
T Consensus 86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~--~~--~--------- 152 (579)
T PRK09192 86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN--PL--L--------- 152 (579)
T ss_pred hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc--cc--c---------
Confidence 999999999999999999976443 578999999999999999987665443321100 00 0
Q ss_pred HHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhh-hhhcccCCCC
Q 009090 186 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMT 264 (544)
Q Consensus 186 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~ 264 (544)
...++.++.... ..........++++++++|||||||.||+|.++|+++...+..... .+ ++.
T Consensus 153 ----------~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~ 216 (579)
T PRK09192 153 ----------HVLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVR 216 (579)
T ss_pred ----------ceeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCC
Confidence 011233332211 1111222346789999999999999999999999999988776654 44 678
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhc
Q 009090 265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338 (544)
Q Consensus 265 ~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~ 338 (544)
++|+++.++|++|.+++.. ++.++..|+++++.+. ++..+++.+.++++++++..|..+..+.......
T Consensus 217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----- 291 (579)
T PRK09192 217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----- 291 (579)
T ss_pred CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----
Confidence 8999999999999999885 4456888999877652 6888999999999998777665554433211000
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceE
Q 009090 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLV 412 (544)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~ 412 (544)
....+++ +++|.+++||+++++.+.+.|.+.++ ..++
T Consensus 292 -----------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~ 334 (579)
T PRK09192 292 -----------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM 334 (579)
T ss_pred -----------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence 0111223 38999999999999999999888763 2489
Q ss_pred EeeccccccCceeeccCCCc---------------------------cccCccCcCccCceEEEeecCCCCCCCCCCCCC
Q 009090 413 QGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 465 (544)
Q Consensus 413 ~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~ 465 (544)
+.||+||++..++....... ....++|.+.|+++++|++ +++ ..++.++.
T Consensus 335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~--~~~~~g~~ 411 (579)
T PRK09192 335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAG--MPLPERVV 411 (579)
T ss_pred cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCC--CCCCCCCE
Confidence 99999999876654432110 0124789999999999998 543 34566789
Q ss_pred CeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCcc
Q 009090 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543 (544)
Q Consensus 466 Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~ 543 (544)
|||+++|+.++.||+++ +.+.+.+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.+||++|.+||+|.
T Consensus 412 Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~ 487 (579)
T PRK09192 412 GHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR 487 (579)
T ss_pred EEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence 99999999999999999 5555555 7899999999999 89999999999999998 899999999999999999986
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=430.25 Aligned_cols=387 Identities=27% Similarity=0.313 Sum_probs=317.7
Q ss_pred HcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecC
Q 009090 53 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY 132 (544)
Q Consensus 53 ~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~ 132 (544)
...++++|+++. + +++||.||.++++++|..|. ++|+|+++++|+++++++++||+++|++++|++
T Consensus 11 ~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 76 (471)
T PRK07787 11 AAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVP 76 (471)
T ss_pred cccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 356788888753 3 68999999999999999996 579999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccccc
Q 009090 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212 (544)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (544)
+..+.+++.++++.+++++++++.+... ...... .+... ..++.
T Consensus 77 ~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~-~~~~~--------------~~~~~----------- 120 (471)
T PRK07787 77 PDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHV-PVRLH--------------ARSWH----------- 120 (471)
T ss_pred CCCChHHHHHHHHhcCCCEEEecCCccc----------ccccce-eeecc--------------ccccc-----------
Confidence 9999999999999999999999763110 000000 00000 00010
Q ss_pred ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcC
Q 009090 213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRG 291 (544)
Q Consensus 213 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G 291 (544)
......++++++++|||||||.||+|.++|+++...+..+...+ .+..+++++..+|++|..|+.. .+.++..|
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 195 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG 195 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence 11123578999999999999999999999999999887776665 6788999999999999999886 56679999
Q ss_pred cEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHH
Q 009090 292 ASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370 (544)
Q Consensus 292 ~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (544)
+++++.+. ++..+++.++ +++|++.++|.++..+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-------------------------------------- 236 (471)
T PRK07787 196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-------------------------------------- 236 (471)
T ss_pred CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc--------------------------------------
Confidence 99998765 8999999999 9999999999999887642100
Q ss_pred HHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEe
Q 009090 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE 450 (544)
Q Consensus 371 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~ 450 (544)
...++++|.+++||+++++++.++|++.++..+++.||+||++..++.... ....++++|+|.++++++|+
T Consensus 237 --------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~ 307 (471)
T PRK07787 237 --------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLV 307 (471)
T ss_pred --------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEE
Confidence 001137999999999999999999999899999999999999876544432 23334789999999999999
Q ss_pred ecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeec-cceeecCCCceec
Q 009090 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVA 528 (544)
Q Consensus 451 ~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~-~d~i~~~~g~~v~ 528 (544)
+ +++...+.+.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||. +|+++. +|++++
T Consensus 308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~ 385 (471)
T PRK07787 308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIG 385 (471)
T ss_pred C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEEC
Confidence 8 55443332222479999999999999999999999888 5899999999999999999999996 899996 899999
Q ss_pred hHhHHHHhhcCCCccC
Q 009090 529 LEYLENVYCVAPIIED 544 (544)
Q Consensus 529 ~~~iE~~l~~~~~V~~ 544 (544)
|.+||++|..+|.|+|
T Consensus 386 ~~eIE~~l~~~~~v~~ 401 (471)
T PRK07787 386 AGEIETALLGHPGVRE 401 (471)
T ss_pred HHHHHHHHHhCCCcce
Confidence 9999999999999875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=523.21 Aligned_cols=414 Identities=20% Similarity=0.239 Sum_probs=347.4
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++++|+++|+++. + +++||+||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la 580 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA 580 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 568999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++.+++.++++.++++++|++......+... ....++..+.... +
T Consensus 581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~---------------~ 639 (5163)
T PRK12316 581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA------AGVQVLDLDRPAA---------------W 639 (5163)
T ss_pred HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc------cCceEEEecCcch---------------h
Confidence 999999999999999999999999999999999987654432110 0112222221100 0
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.... ..........++++++++|||||||.||||+++|+++.+.+......+ ++..+|+++...|++|..+
T Consensus 640 ---~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~ 710 (5163)
T PRK12316 640 ---LEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS 710 (5163)
T ss_pred ---hccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence 0000 111122334678999999999999999999999999999998877766 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.++..|+++++.+. ++..+.+.++++++|++.++|++++.|++....
T Consensus 711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------ 766 (5163)
T PRK12316 711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV------------------------ 766 (5163)
T ss_pred HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc------------------------
Confidence 9888899999999999853 889999999999999999999999987542110
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccC-CCccc
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM 434 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~-~~~~~ 434 (544)
...+++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++.... .....
T Consensus 767 -----------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 823 (5163)
T PRK12316 767 -----------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD 823 (5163)
T ss_pred -----------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence 0113899999999999999999997766 6899999999999865544332 22233
Q ss_pred cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------CCccccCceEEEccCC
Q 009090 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (544)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~g 507 (544)
..++|+|++|++++|+| +++ .+++.|+.|||+|+|++++.||+++|+.+.+.|. ++||+|||+|++++||
T Consensus 824 ~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG 900 (5163)
T PRK12316 824 SVPIGRPIANLACYILD-ANL--EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG 900 (5163)
T ss_pred CCCCccccCCCEEEEEC-CCC--CCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence 46899999999999998 544 4667889999999999999999999999998882 3499999999999999
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.++++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~ 936 (5163)
T PRK12316 901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVRE 936 (5163)
T ss_pred CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcce
Confidence 99999999999998 7999999999999999999975
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=420.44 Aligned_cols=386 Identities=25% Similarity=0.319 Sum_probs=321.4
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEcc
Q 009090 78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (544)
Q Consensus 78 Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (544)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCc
Q 009090 157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK 236 (544)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK 236 (544)
.....+..... ..+..... +...................+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 77655432211 11111110 0000000000011111145788999999999999999
Q ss_pred eeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhC
Q 009090 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK 312 (544)
Q Consensus 237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~ 312 (544)
+|.+||+++...+..+...+ .+..+|++++..|++|.+++...+.++..|+++++++. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999988877765 67889999999999999998888899999999998876 2678999999999
Q ss_pred CcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcC
Q 009090 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392 (544)
Q Consensus 313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 392 (544)
+|.+.++|.+++.+.+... ...+++|.++++|
T Consensus 212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence 9999999999999876422 0113899999999
Q ss_pred CCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCCCcc----ccCccCcCccCceEEEeecCCCCCCCCCCCCCCe
Q 009090 393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC----MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 467 (544)
Q Consensus 393 ~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~----~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Ge 467 (544)
+++++++.++|++.++ +.+++.||+||+++++......... ...++|.+.++++++|++ ++ ..+++.|+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~--~~~~~~g~~Ge 320 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DD--LRPVPVGVVGE 320 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CC--CCCCCCCCceE
Confidence 9999999999999997 8999999999999877533222211 157899999999999998 54 34566788999
Q ss_pred EEEecCCccccccCChhhhhhcccC-------C--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhc
Q 009090 468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 468 i~v~~~~v~~gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~ 538 (544)
|+++|+.++.||+++++.+.+.|.. | ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||++|.+
T Consensus 321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR 399 (408)
T ss_pred EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence 9999999999999999998888732 2 9999999999999999999999999997 8999999999999999
Q ss_pred CCCccC
Q 009090 539 APIIED 544 (544)
Q Consensus 539 ~~~V~~ 544 (544)
||+|+|
T Consensus 400 ~~~v~~ 405 (408)
T TIGR01733 400 HPGVRE 405 (408)
T ss_pred Ccchhh
Confidence 999975
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=472.56 Aligned_cols=427 Identities=20% Similarity=0.214 Sum_probs=333.0
Q ss_pred CCcccHHHHHHHHHHcCC-CCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p-~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
+...++.+.|.+.++++| ++.++.+. ++ +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 345678888888888886 45665432 22 579999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhc-ccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
++||+++|++++|+++..+.+++.++++++++++++++++....... ...........++..++..... ..
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~ 770 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GL 770 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------Ch
Confidence 99999999999999999999999999999999999998765443210 0001111122333333211000 00
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
...+.+..... ..........++++++++|||||||.||+|.+||+++...+......+ ...++|++++.+|++
T Consensus 771 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~ 844 (1140)
T PRK06814 771 ADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF 844 (1140)
T ss_pred HHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence 00011111111 001111134678999999999999999999999999998888776665 788999999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.++..|+++++.+. +...+.+.++++++|++..+|++++.+.+...
T Consensus 845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~---------------------- 902 (1140)
T PRK06814 845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH---------------------- 902 (1140)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------
Confidence 9999854 6668999999998864 66778899999999999999999887654210
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
.. +.+++|.+++||+++++++.+.+.+.+++++++.||+||++..+..+.+.. .
T Consensus 903 -----------------~~--------~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~ 956 (1140)
T PRK06814 903 -----------------PY--------DFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-N 956 (1140)
T ss_pred -----------------cc--------cccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-C
Confidence 00 113899999999999999999999999999999999999998776654333 3
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhh-hcccCCccccCceEEEccCCcEEEE
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~-~~~~~g~~~TGDlg~~~~~g~l~~~ 512 (544)
..+++|+|.|++++++.+. ++ .++.|||+++|+.++.||+++++... +...+|||+|||+|++|+||++++.
T Consensus 957 ~~~~vG~p~~g~~~~~~~~-~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~ 1029 (1140)
T PRK06814 957 KAGTVGRLLPGIEYRLEPV-PG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIK 1029 (1140)
T ss_pred CCCcCCccCCCCeEEEeec-CC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEE
Confidence 3478999999999999872 21 24679999999999999998764332 2236899999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 1030 GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~ 1060 (1140)
T PRK06814 1030 GRAKRFAKI-AGEMISLAAVEELAAELWPDAL 1060 (1140)
T ss_pred ecccCeeee-CCEEECHHHHHHHHHhcCCccc
Confidence 999999997 8999999999999999998764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=440.52 Aligned_cols=426 Identities=18% Similarity=0.212 Sum_probs=319.5
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCC---CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
++.++|++++..+|+++|+++. +. .++..+.+||.||.+++.++|++|.+.| .+||+|+++++|++++++++|
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l 77 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL 77 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence 6889999999999999999875 31 1233478999999999999999999999 689999999999999999999
Q ss_pred HHHhcCCEEeecCC---CCChhHHHHHHHhcCceEEEEccchhhHhhcccccc-cccccEEEEecCCchHHHHHHhhCCc
Q 009090 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 120 A~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
||+++|++++|+++ ..+.+++.++|+.+++++++++++....+....... ......++..+..
T Consensus 78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (578)
T PRK05850 78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------- 144 (578)
T ss_pred HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence 99999999999987 457889999999999999999987665543211100 0011111111110
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhh-hcccCCCCCCcEEEEecC
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~d~~l~~~p 274 (544)
. +.. ..........++++++++|||||||.||+|.++|++++..+......+ .........+++++++.|
T Consensus 145 ---~---~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 215 (578)
T PRK05850 145 ---D---LDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP 215 (578)
T ss_pred ---c---ccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence 0 000 000111234668999999999999999999999999988776554322 100011356889999999
Q ss_pred hHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHH-HHHHHHHhhchHHHHHHHH
Q 009090 275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE-GIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 275 ~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 347 (544)
++|.+|+.. .+.+++.|+++++.+. ++..+++.++++++++. .+|.++..+.. .....
T Consensus 216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~-------------- 280 (578)
T PRK05850 216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD-------------- 280 (578)
T ss_pred CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence 999999875 6678999999998863 68899999999999855 55655433321 11000
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceEEeecccccc
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC 421 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~YG~tE~~ 421 (544)
....+++ +++|.+++||+++++++.++|.+.|+ ..+++.||+||++
T Consensus 281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 332 (578)
T PRK05850 281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT 332 (578)
T ss_pred --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence 0001112 37999999999999999999988773 3689999999987
Q ss_pred CceeeccCCCc------------------------cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 009090 422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (544)
Q Consensus 422 ~~~~~~~~~~~------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~ 477 (544)
..+........ ....++|.|. +.++++++ ++ +..+++.|+.|||+++|+.++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~-~~~~~~~g~~Gel~v~g~~~~~ 409 (578)
T PRK05850 333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PD-TCIECPAGTVGEIWVHGDNVAA 409 (578)
T ss_pred hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CC-CCcCCCCCCEEEEEEecCcccc
Confidence 65543321110 0001334443 57899988 43 3355678899999999999999
Q ss_pred cccCChhhhhhccc------------CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCc
Q 009090 478 GYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542 (544)
Q Consensus 478 gy~~~~~~~~~~~~------------~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V 542 (544)
||+++++.+.+.|. +|||+|||+|+++ ||++++.||.+|+|++ +|++|+|.+||++|.+||.+
T Consensus 410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~ 484 (578)
T PRK05850 410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG 484 (578)
T ss_pred cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC
Confidence 99999999998872 4799999999997 9999999999999997 89999999999999999874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=518.84 Aligned_cols=418 Identities=17% Similarity=0.169 Sum_probs=347.9
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + ..+||+||.++++++|+.|.+.|+++|++|++++++++++++++|
T Consensus 3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691 3718 LEQSYVRLFEAQVAAHPQRIAASCL---D------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred cccCHHHHHHHHHHhCCCceEEEcC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4569999999999999999999876 4 369999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccccc-ccccEEEEecCCchHHHHHHhhCCceee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
||+++|++++|++|.++.+++.++++.++++++|++............... .....++..++
T Consensus 3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691 3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence 999999999999999999999999999999999999876443221111000 01111111111
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
................+++.+|++|||||||.||||+++|+++.+.+......+ .++++|+++...++.+.
T Consensus 3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691 3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence 100000111122345678999999999999999999999999999998877766 78999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.+....+.++..|+++++++. ++..+.+.++++++|++..+|+++..+++....
T Consensus 3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 3980 (4334)
T PRK05691 3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------- 3980 (4334)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------
Confidence 999889999999999999875 688999999999999999999999877532110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC--
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-- 431 (544)
..++||.+++|||++++++.+.|.+.+ ++.+++.||+||++..++......
T Consensus 3981 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691 3981 --------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred --------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence 013899999999999999999988775 789999999999998776543322
Q ss_pred -ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--------CCccccCceEE
Q 009090 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ 502 (544)
Q Consensus 432 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--------~g~~~TGDlg~ 502 (544)
......+|+|+++++++|+| +. ..+++.|..|||+|+|+.+++||+++|+.|.+.|. ++||||||+|+
T Consensus 4035 ~~~~~~~iG~p~~~~~~~v~d-~~--~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691 4035 TRGSYLPIGSPTDNNRLYLLD-EA--LELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred ccCCcCCCCCccCCCEEEEEC-CC--CCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence 11224699999999999998 43 34566778999999999999999999999999982 36999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++||.++++||.|++||+ +|++|.+.|||++|.++|+|++
T Consensus 4112 ~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~ 4152 (4334)
T PRK05691 4112 RRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVRE 4152 (4334)
T ss_pred ecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccE
Confidence 9999999999999999998 7999999999999999999864
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=428.72 Aligned_cols=421 Identities=20% Similarity=0.202 Sum_probs=330.3
Q ss_pred HHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEE
Q 009090 49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC 128 (544)
Q Consensus 49 ~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 128 (544)
..+++++|+++|+++. ++. +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4678899999999864 222 579999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccc
Q 009090 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK 208 (544)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (544)
+++++.++.+++.++++.++++.++++........+.... .......+....... ......+.+.....
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~- 145 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQ-CPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL- 145 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhc-CCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence 9999999999999999999999999998776544332211 122222333221110 00122233332211
Q ss_pred ccccccCCCCCCCeEEEEecCCCCCCCceeee--ccHhHHHHH---hhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH
Q 009090 209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI 283 (544)
Q Consensus 209 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~--sh~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~ 283 (544)
+ .......++.++++|||||||.||+|.+ +|.++.... ..+...+ .+..++++++..|++|..++..
T Consensus 146 --~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~ 217 (511)
T PRK13391 146 --P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA 217 (511)
T ss_pred --C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence 1 1111234567899999999999999995 466654332 2222222 5678899999999999998887
Q ss_pred HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCc
Q 009090 284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362 (544)
Q Consensus 284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (544)
.+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+......
T Consensus 218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------- 269 (511)
T PRK13391 218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------- 269 (511)
T ss_pred HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence 7778999999998876 89999999999999999999999887754211100
Q ss_pred CCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCc
Q 009090 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442 (544)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~ 442 (544)
+.. ..+++|.+++||+++++++.+++++.+|..+++.||+||++.++...........+++|.+.
T Consensus 270 -------~~~--------~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~ 334 (511)
T PRK13391 270 -------DKY--------DLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM 334 (511)
T ss_pred -------ccC--------CccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence 001 12389999999999999999999998899999999999999876654433334457899999
Q ss_pred cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-c-CCccccCceEEEccCCcEEEEeeccceee
Q 009090 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520 (544)
Q Consensus 443 ~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~-~g~~~TGDlg~~~~~g~l~~~GR~~d~i~ 520 (544)
++ ++++++ +++ .+++.|+.|||+++|+ ++.||+++++.+.+.+ . ++||+|||+|+++++|.+++.||.+|+++
T Consensus 335 ~g-~~~i~d-~~~--~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~ 409 (511)
T PRK13391 335 FG-DLHILD-DDG--AELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII 409 (511)
T ss_pred cc-eEEEEC-CCC--CCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence 99 688887 443 4456778999999999 8889999999988877 3 38999999999999999999999999999
Q ss_pred cCCCceechHhHHHHhhcCCCccC
Q 009090 521 ISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 521 ~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+ +|.+++|.+||++|.+||.|.+
T Consensus 410 ~-~G~~v~~~eie~~l~~~~~v~~ 432 (511)
T PRK13391 410 S-GGVNIYPQEAENLLITHPKVAD 432 (511)
T ss_pred e-CCEEECHHHHHHHHHhCCCcce
Confidence 7 8999999999999999998864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=513.76 Aligned_cols=413 Identities=21% Similarity=0.254 Sum_probs=346.1
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + .++||+||.++++++|+.|++.|+++|++|++++++++++++++|
T Consensus 1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4568999999999999999999865 3 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.++++++|++......+.... .. ..+..+...
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE-----GV-SAIALDSLH---------------- 1257 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc-----Cc-eEEeecccc----------------
Confidence 99999999999999999999999999999999999877654331110 00 111111110
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
... .....+.....++++++++|||||||.||||.++|+++.+.+......+ .+.++|+++...|+.|..
T Consensus 1258 ~~~-----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1327 (4334)
T PRK05691 1258 LDS-----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDV 1327 (4334)
T ss_pred ccc-----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 000 0001112234678999999999999999999999999999888776666 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
++..++.++..|+++++.+. ++..+.+.++++++|++.++|+++..+.+....
T Consensus 1328 s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 1384 (4334)
T PRK05691 1328 SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----------------------- 1384 (4334)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-----------------------
Confidence 88888899999999999853 788999999999999999999999887542110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccC-CCcc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMC 433 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~-~~~~ 433 (544)
...++||.+++||+++++++.++|.+.+ ++.+++.||+||++..++.... ....
T Consensus 1385 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 1440 (4334)
T PRK05691 1385 ------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDG 1440 (4334)
T ss_pred ------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccC
Confidence 0113899999999999999999999887 6889999999999877664322 1222
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc--------CCccccCceEEEcc
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILP 505 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~--------~g~~~TGDlg~~~~ 505 (544)
...++|+|+++++++|+| +++ .+++.|+.|||+|+|+.+++||+++|+.+.+.|. .+||+|||+|++++
T Consensus 1441 ~~~~iG~p~~~~~~~i~d-~~~--~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691 1441 ERSPIGRPLGNVLCRVLD-AEL--NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred CCCcccceeCCCEEEEEC-CCC--CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence 346899999999999998 443 5567789999999999999999999999999882 14999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.++++||.|++||+ +|++|+|.|||++|.+||+|++
T Consensus 1518 dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~ 1555 (4334)
T PRK05691 1518 DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQ 1555 (4334)
T ss_pred CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcce
Confidence 9999999999999998 7999999999999999999874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=424.25 Aligned_cols=378 Identities=25% Similarity=0.311 Sum_probs=314.4
Q ss_pred cHHHHH-HHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 43 TAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 43 tl~~~l-~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
++.+.. .++++++|+++|++.. + +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~ 73 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 444444 5668899999999743 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHH
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (544)
+++|++++|+++..+.+++..+++.+++++++++++... ... .... .+.
T Consensus 74 ~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~~ 122 (458)
T PRK09029 74 LQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HLQ 122 (458)
T ss_pred HHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------ccc
Confidence 999999999999999999999999999999998765422 100 0000 000
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHH
Q 009090 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (544)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 281 (544)
. ..........++++++++|||||||.||+|.+||+++...+......+ ....+|+++...|++|.+++
T Consensus 123 ~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~ 191 (458)
T PRK09029 123 L------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQ 191 (458)
T ss_pred c------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhh
Confidence 0 001112234678899999999999999999999999999888776665 67889999999999999998
Q ss_pred HHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccC
Q 009090 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361 (544)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (544)
...+.++..|+++++.+. ..+...+ .++|.+..+|+++..+.....+
T Consensus 192 ~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------- 238 (458)
T PRK09029 192 GIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------- 238 (458)
T ss_pred HHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------
Confidence 777778999999998764 4456666 4789999999998877542111
Q ss_pred cCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcC
Q 009090 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441 (544)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~ 441 (544)
..++|.+++||+++++.+.+++.+. +.++++.||+||++...+...... ..++|+|
T Consensus 239 --------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~---~~~~G~~ 294 (458)
T PRK09029 239 --------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRADG---LAGVGSP 294 (458)
T ss_pred --------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCCC---CCCCCCC
Confidence 0278999999999999999998875 999999999999987655443321 2569999
Q ss_pred ccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeec
Q 009090 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521 (544)
Q Consensus 442 ~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~ 521 (544)
.+++++++++ |||+++|+.++.||+++++.+.....+|||+|||+|++| ||++++.||.+|+|++
T Consensus 295 ~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~ 359 (458)
T PRK09029 295 LPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFS 359 (458)
T ss_pred CCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceee
Confidence 9999999976 899999999999999998887665678999999999999 9999999999999997
Q ss_pred CCCceechHhHHHHhhcCCCccC
Q 009090 522 SQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 522 ~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|.+|+|.+||++|.+||+|.|
T Consensus 360 -~G~~v~p~eiE~~l~~~~~v~~ 381 (458)
T PRK09029 360 -GGEGIQPEEIERVINQHPLVQQ 381 (458)
T ss_pred -CCEEeCHHHHHHHHhcCCCcce
Confidence 7999999999999999999875
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=430.62 Aligned_cols=419 Identities=19% Similarity=0.237 Sum_probs=329.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.+.+..+|..+|+.+++... ++ .+.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la 73 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG 73 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 356888899999999999988654 33 26899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHH-------HHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhC
Q 009090 121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (544)
|+++|++++++++..+.+++ .++++.++++.+++++........... .
T Consensus 74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~---------------------- 128 (545)
T PRK07768 74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE---K---------------------- 128 (545)
T ss_pred HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc---c----------------------
Confidence 99999999999988776554 456777899999998765432211100 0
Q ss_pred CceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCC-cEEEEe
Q 009090 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF 272 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~ 272 (544)
......++++..... .......++++++++|||||||.||+|.++|+++...+..+...+ ++..+ |+++++
T Consensus 129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~ 200 (545)
T PRK07768 129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW 200 (545)
T ss_pred CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence 011234444443221 122344678999999999999999999999999998887766555 56665 899999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 273 ~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+|++|..++.. +..++..|+++++.++ ++..+.+.+++++++++...|.++..+.+.+.+...
T Consensus 201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~----------- 269 (545)
T PRK07768 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK----------- 269 (545)
T ss_pred CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-----------
Confidence 99999999875 4557999999988764 677889999999999988877777665443221100
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHh---cCC---ceEEeeccccc
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET 420 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~i~~~YG~tE~ 420 (544)
....++ +++|.++++|+++++++.+++.+. +|. .+++.||+||+
T Consensus 270 ----------------------~~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~ 319 (545)
T PRK07768 270 ----------------------PGAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA 319 (545)
T ss_pred ----------------------ccCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 001112 389999999999999999998875 454 49999999999
Q ss_pred cCceeeccCCC-------------------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCc
Q 009090 421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475 (544)
Q Consensus 421 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v 475 (544)
+..+.....+. ....+++|+|.+++++++++ +++ .+++.++.|||+++|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~--~~~~~g~~Gel~v~~~~~ 396 (545)
T PRK07768 320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDG--QVLPPRGVGVIELRGESV 396 (545)
T ss_pred ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCC--CCCCCCCEEEEEEccCcc
Confidence 87654433221 11235899999999999998 554 445677899999999999
Q ss_pred cccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 476 ~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+.||++.+........+|||+|||+|+++++|.++++||.+|+|++ +|.+++|.+||+.|.+||+|.+
T Consensus 397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~ 464 (545)
T PRK07768 397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRP 464 (545)
T ss_pred cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCccccc
Confidence 9999987655544446889999999999999999999999999998 7999999999999999999874
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=422.73 Aligned_cols=432 Identities=21% Similarity=0.233 Sum_probs=335.8
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
|+.++|+++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999999864 3 589999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (544)
++|++++|+++.++.+++.++++.+++++++++.+....+.+... .....+.++.+++.... .......++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 147 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGN------DLLPGAVDYED 147 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCccc------ccCCccccHHH
Confidence 999999999999999999999999999999999876655544322 22344455555433211 00112345666
Q ss_pred HHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhc----ccC------CCCCCcEEEEe
Q 009090 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FED------KMTVDDVYLSF 272 (544)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~----~~~------~~~~~d~~l~~ 272 (544)
+....... .... ....+.++++|||||||.||+|+++|+++...+......+.. ... ....+++++..
T Consensus 148 ~~~~~~~~-~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPE-RDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCc-CCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 65443211 1111 223455789999999999999999999987665443221100 000 11567899999
Q ss_pred cChHHHHHHHHHHHHHHcCcEEEEec--C-ChhhHHHHhhhhCCcEEEeccHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 009090 273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL 348 (544)
Q Consensus 273 ~p~~~~~g~~~~~~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 348 (544)
.|++|..++...+.+++.|+++++.+ . ++..+++.++++++|.+.++|..+.. +.+.+. .
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~--------------- 289 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A--------------- 289 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence 99999999988888999999999998 4 89999999999999999999876643 222111 0
Q ss_pred HHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeec
Q 009090 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC 427 (544)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~ 427 (544)
.....++++|.+++||+++++++.++|++.+ +..+++.||+||++.+....
T Consensus 290 ----------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 341 (533)
T PRK07798 290 ----------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT 341 (533)
T ss_pred ----------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence 0001124899999999999999999999988 78999999999997655543
Q ss_pred cCCCccccCccC--cCccCceEEEeecCCCCCCCCCCCCC--CeEEEecCCccccccCChhhhhhccc--C--CccccCc
Q 009090 428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPC--GEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGD 499 (544)
Q Consensus 428 ~~~~~~~~~~~G--~~~~~~~v~i~~~~~~~~~~~~~g~~--Gei~v~~~~v~~gy~~~~~~~~~~~~--~--g~~~TGD 499 (544)
..... ...| .+.++..+++++ +++. +++.|+. |+++ +++.++.||+++++.+.+.|. + +||+|||
T Consensus 342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~--~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD 414 (533)
T PRK07798 342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGN--PVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGD 414 (533)
T ss_pred CCCCC---ccCCCCccCCCceEEEEC-CCCC--CCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCc
Confidence 22222 2233 788899999998 5554 4445555 6665 566899999999999988873 2 5999999
Q ss_pred eEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 500 lg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++|++|++++.||.+|+|++ +|++|+|.+||++|.++|+|.|
T Consensus 415 ~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~ 458 (533)
T PRK07798 415 RARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVAD 458 (533)
T ss_pred EEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCcccee
Confidence 9999999999999999999996 8999999999999999999864
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-51 Score=419.54 Aligned_cols=352 Identities=19% Similarity=0.224 Sum_probs=288.4
Q ss_pred eeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEc
Q 009090 77 KTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (544)
Q Consensus 77 ~Ty~el~~~~~~la~~L~~~gl-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~ 155 (544)
+.|.||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999988 579999999999999999999999999999999999999999999999999999987
Q ss_pred cchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCC
Q 009090 156 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDP 235 (544)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~p 235 (544)
++..... .... . . ......++++++++|||||||.|
T Consensus 100 ~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG~P 135 (452)
T PRK07445 100 DQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSGQI 135 (452)
T ss_pred Ccccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCCCC
Confidence 6532100 0000 0 0 00113467899999999999999
Q ss_pred ceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCc
Q 009090 236 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPT 314 (544)
Q Consensus 236 K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t 314 (544)
|+|.+||+++...+......+ .+.+ ++.++++|++|.+|+...+.++..|+++++.+. ...........++++
T Consensus 136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t 209 (452)
T PRK07445 136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF 209 (452)
T ss_pred cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence 999999999988877765554 4444 467889999999999877788999999998864 233333444578899
Q ss_pred EEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCC
Q 009090 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394 (544)
Q Consensus 315 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~ 394 (544)
++.++|.++..+.+... . .++++|.+++||++
T Consensus 210 ~~~~vP~~l~~l~~~~~---~---------------------------------------------~l~~l~~i~~gG~~ 241 (452)
T PRK07445 210 FLSLVPTQLQRLLQLRP---Q---------------------------------------------WLAQFRTILLGGAP 241 (452)
T ss_pred EEEehHHHHHHHHhhCh---h---------------------------------------------hhhcceEEEECCcc
Confidence 99999999998764100 0 01389999999999
Q ss_pred CCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecC
Q 009090 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (544)
Q Consensus 395 l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~ 473 (544)
+++++.+.++.. ++++++.||+||++..++...+.. .....++|+|.|+++++|+ .++.|||+++|+
T Consensus 242 l~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~-----------~g~~Gel~v~g~ 309 (452)
T PRK07445 242 AWPSLLEQARQL-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP-----------ANQTGNITIQAQ 309 (452)
T ss_pred CCHHHHHHHHhc-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc-----------CCCcceEEEeCC
Confidence 999999988764 899999999999986654433332 2234689999999999987 235799999999
Q ss_pred CccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 474 ~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.++.||++++.. .+|||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~ 374 (452)
T PRK07445 310 SLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQD 374 (452)
T ss_pred ccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999986421 4789999999999999999999999999996 8999999999999999999975
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=412.67 Aligned_cols=446 Identities=21% Similarity=0.258 Sum_probs=354.8
Q ss_pred CCCCC-CCCCcccHHHHH-HHHHHc-CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 009090 32 NGFPS-VDSDLNTAWDIF-SMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (544)
Q Consensus 32 ~~~~~-~~~~~~tl~~~l-~~~a~~-~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~ 108 (544)
++.+. ++....++...+ +++.+. .++.++++++ +...+....+||.|+.+++.++|..|.+.|+++||+|++++
T Consensus 52 ~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~m 128 (626)
T KOG1175|consen 52 NPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYM 128 (626)
T ss_pred CCCccccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 34443 455555655544 444333 4888999887 43333334499999999999999999988999999999999
Q ss_pred cCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccccc--------c----cccEE
Q 009090 109 ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--------Q----RLRVM 176 (544)
Q Consensus 109 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--------~----~~~~~ 176 (544)
|+.++++++++||.++|++..++...++++++...|+.++++++++.+............+. . .....
T Consensus 129 Pm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~ 208 (626)
T KOG1175|consen 129 PMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLD 208 (626)
T ss_pred cCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhccccccccccee
Confidence 99999999999999999999999999999999999999999999998865433211111100 0 00011
Q ss_pred EEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHh-HHHHHhhhhhh
Q 009090 177 VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLF 255 (544)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~ 255 (544)
+.+... .....|+.+..... ...++.....+|+.+|+|||||||.||++.+++.. ++..+......
T Consensus 209 ~~~~~~------------~~d~~~~~~~~~a~-~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~ 275 (626)
T KOG1175|consen 209 LIVSRR------------NRDLFWSLELKKAS-PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYH 275 (626)
T ss_pred eEEecc------------cccccHHHHhhhcC-CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhccee
Confidence 111111 11335565555443 23336677899999999999999999999988875 55555555444
Q ss_pred hhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHH
Q 009090 256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (544)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~ 331 (544)
+ ++.++|++++.....|+.+.+. .+.+++.|+++++..+ ++..+++.+.++++|.++..|+.++.|.+...
T Consensus 276 ~-----d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~ 350 (626)
T KOG1175|consen 276 F-----DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ 350 (626)
T ss_pred c-----cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence 4 8899999999999999999987 5558999999999875 78999999999999999999999997754322
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-c
Q 009090 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-F 410 (544)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~ 410 (544)
+. ....+| ++||.+.++||++.++..+++.+.++. +
T Consensus 351 ~~-----------------------------------~~~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~p 387 (626)
T KOG1175|consen 351 ED-----------------------------------VTSYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDP 387 (626)
T ss_pred cc-----------------------------------cccccc--------ceEEEEeecCccCCcchHHHHHHhcCccc
Confidence 22 111222 289999999999999999999999987 6
Q ss_pred eEEeeccccccCceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--C-CccccccCChhhh
Q 009090 411 LVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLT 486 (544)
Q Consensus 411 i~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~-~v~~gy~~~~~~~ 486 (544)
|++.||+||+|+.+..+.+.. ..++++.+.|.+++.+.|+| +++...+... +.|+|+++. | +.+++|++|++..
T Consensus 388 v~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf 465 (626)
T KOG1175|consen 388 IYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERF 465 (626)
T ss_pred hhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHh
Confidence 999999999999999988887 67779999999999999999 5555444333 789999997 4 7899999999955
Q ss_pred hhcc---cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 487 RESI---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 487 ~~~~---~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
...+ ..|||+|||.|++|+||++++.||.||+|++ +|.++.+.|||++|.+||.|.|
T Consensus 466 ~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaE 525 (626)
T KOG1175|consen 466 RAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAE 525 (626)
T ss_pred hhhhcccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhh
Confidence 5554 3799999999999999999999999999998 7999999999999999999976
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=423.31 Aligned_cols=410 Identities=21% Similarity=0.229 Sum_probs=323.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhcccccccccccEEEEecCCchHH-HHH----HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecC
Q 009090 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ-KEM----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229 (544)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TS 229 (544)
+......+.+... ....++......... ... .........+|+++..... .......+++++++|||
T Consensus 90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS 161 (509)
T ss_pred ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence 8876655432221 111111111110000 000 0001112345555543211 11233568999999999
Q ss_pred CCCCCCceeeeccHhHHHH---HhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHH
Q 009090 230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR 305 (544)
Q Consensus 230 GtTG~pK~v~~sh~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~ 305 (544)
||||.||+|.++|...... .......+ ++..+++++...|++|..+....+.++..|+++++.+. ++..++
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 236 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL 236 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence 9999999999877654333 22222233 67889999999999999887777777888999988766 899999
Q ss_pred HHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcc
Q 009090 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385 (544)
Q Consensus 306 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (544)
+.++++++|++.++|.++..+++..... .... ..+++
T Consensus 237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~--------~~~~l 273 (509)
T PRK12406 237 QLIERHRITHMHMVPTMFIRLLKLPEEV-----------------------------------RAKY--------DVSSL 273 (509)
T ss_pred HHHHHcCCeEEEccHHHHHHHHhCchhh-----------------------------------cccC--------CCCce
Confidence 9999999999999999998876421110 0001 12389
Q ss_pred cEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCC
Q 009090 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 465 (544)
Q Consensus 386 r~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~ 465 (544)
|.+++||+++++++.+++.+.++..+++.||+||++.+++.........++++|.+.+++++++++ +++ .+++.|+.
T Consensus 274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~--~~~~~g~~ 350 (509)
T PRK12406 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDG--RPLPQGEI 350 (509)
T ss_pred eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCC--CCCCCCCc
Confidence 999999999999999999999999999999999999877655444444557899999999999999 544 45567789
Q ss_pred CeEEEecCCccc-cccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 466 Gei~v~~~~v~~-gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+++|+.++. +|+++++.+...+.++||+|||+|+++++|.+++.||.+|+|++ +|.+|+|.+||++|.++|+|.+
T Consensus 351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~ 429 (509)
T PRK12406 351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD 429 (509)
T ss_pred eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 999999998875 89999998888788999999999999999999999999999997 8999999999999999999864
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=419.62 Aligned_cols=406 Identities=21% Similarity=0.242 Sum_probs=323.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
+.+||.||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 009090 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD 234 (544)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 234 (544)
++.....+.............++...... .....|++...... .......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence 98776554332211111233333332111 01223444433211 1122355678999999999999
Q ss_pred CceeeeccHhHHHHHh--hhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhh
Q 009090 235 PKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMEL 311 (544)
Q Consensus 235 pK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~ 311 (544)
||+|.++|.++..... ........ ......++++++..|++|..++...+.++..|+++++.+. ++..+++.++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 233 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGF-GMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY 233 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhh-cccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence 9999999877553321 11111100 1123467899999999999998887788999999988876 899999999999
Q ss_pred CCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEc
Q 009090 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391 (544)
Q Consensus 312 ~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~ 391 (544)
++|++.++|.++..+++..... ...+++ +++|.++++
T Consensus 234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~ 270 (502)
T PRK08276 234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIHA 270 (502)
T ss_pred CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEec
Confidence 9999999999998876421100 011122 389999999
Q ss_pred CCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEe
Q 009090 392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR 471 (544)
Q Consensus 392 G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~ 471 (544)
|++++.++.+++.+.++..+++.||+||++.+++..........+++|.|. +.++++++ +++ .+++.|+.|||+++
T Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~--~~~~~g~~Gel~v~ 346 (502)
T PRK08276 271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDG--NELPPGEIGTVYFE 346 (502)
T ss_pred CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCC--CCCcCCCceEEEEE
Confidence 999999999999999898999999999999877665544334457899999 88999988 443 45667789999999
Q ss_pred cCCccccccCChhhhhhccc-CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 472 GKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 472 ~~~v~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+.++.||+++++.+...+. ++||+|||+|+++++|.+++.||.+|++++ +|.+++|.+||++|.+||+|.|
T Consensus 347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~ 419 (502)
T PRK08276 347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVAD 419 (502)
T ss_pred CCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999999999884 599999999999999999999999999997 8999999999999999999874
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=434.61 Aligned_cols=464 Identities=19% Similarity=0.265 Sum_probs=365.7
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecC
Q 009090 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 110 (544)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n 110 (544)
+..++++ +...|+.++|.+.++++|+++|+... ...++++++||+|+.+++.++|.+|.+.|+++||+|+++++|
T Consensus 417 ~~~~~~~-~~~~Tl~dll~~~a~~~pd~~al~~~----~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N 491 (1452)
T PTZ00297 417 PREYNPL-AGVRSLGEMWERSVTRHSTFRCLGQT----SESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEA 491 (1452)
T ss_pred hhcCCCc-ccCCCHHHHHHHHHHHCCCCeEEEEe----ccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 3455555 44569999999999999999998632 123456789999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHH-HH
Q 009090 111 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-EM 189 (544)
Q Consensus 111 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 189 (544)
+++|+++.+||+++|++++|+++ +.+++.++|+.++++++|++.+....+.+... ..++.++.+++...... ..
T Consensus 492 ~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 492 SRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred CHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccc
Confidence 99999999999999999999975 36799999999999999999888776654332 25778888754211000 00
Q ss_pred HhhCCceeeeHHHHHhccccccc-ccCCCCCCCeEEEEe---cCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCC
Q 009090 190 AVQTGIKPYSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (544)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~---TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~ 265 (544)
.........+|+++...+..... ......++|++.|+| ||||||.||||++||+|++..+..+..... .....+
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~ 644 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFK 644 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCC
Confidence 00112345679999876632111 122346788999986 999999999999999999999887654210 012457
Q ss_pred CcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 266 ~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
+|++++.+|++|+++....+.+++.|+++... ++..+.+.+++++||+++++|.+++++.+.+.+.....+.++++++
T Consensus 645 ~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf 722 (1452)
T PTZ00297 645 KHLMVHFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLF 722 (1452)
T ss_pred CCEEEEechHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 89999999999999977777789999998743 7899999999999999999999999999988888888888999999
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCC--CCCHHHHHHHHHhcCCceEEeeccccccCc
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGP 423 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 423 (544)
+++.+.+.+.+..+. ....+++.+.|++.++.+|.++|.+++||+ +++..+.. ++++...||+||+.
T Consensus 723 ~~A~~~k~~~~~~g~---~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~-- 791 (1452)
T PTZ00297 723 ERAFQLRSRLINIHR---RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF-- 791 (1452)
T ss_pred HHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee--
Confidence 999998777665442 345688999999999999999999999983 55533332 67788999999943
Q ss_pred eeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEE
Q 009090 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (544)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (544)
+.+.++... ..|.|+|++++||.++++.+.. +..|||++++ +++|+.|.+. .+||+
T Consensus 792 -~~~~~~~~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~-------- 847 (1452)
T PTZ00297 792 -FLPSEGVFC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK-------- 847 (1452)
T ss_pred -eecCCCCcc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc--------
Confidence 334443332 2399999999999984443322 2369999964 5788888874 36775
Q ss_pred ccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 504 ~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||+|+|.||.+|+|+.++|++|.|+.||+++..+|.|.+
T Consensus 848 -~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~q 887 (1452)
T PTZ00297 848 -RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVND 887 (1452)
T ss_pred -cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccE
Confidence 6999999999999999999999999999999999999864
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=410.86 Aligned_cols=370 Identities=26% Similarity=0.352 Sum_probs=308.0
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccc
Q 009090 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (544)
Q Consensus 78 Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (544)
||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++..+++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCce
Q 009090 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG 237 (544)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 237 (544)
..... +. ...+..+................+++++++|||||||.||+
T Consensus 81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32110 00 00111111111011111223456789999999999999999
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCChhhHHHHhhhhCCcEEE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~ 317 (544)
|.++|.++...+......+ +..++|+++...|++|..++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 9999999998888776665 788999999999999999987777889999999998653 3899999999999999
Q ss_pred eccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCH
Q 009090 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397 (544)
Q Consensus 318 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~ 397 (544)
++|.++..+.+.... .+++|.++++|+++++
T Consensus 203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence 999999887642110 0279999999999999
Q ss_pred HHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 009090 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (544)
Q Consensus 398 ~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~ 477 (544)
++.++++.. +..+++.||+||++..++...........++|.+.+++++++.. ++. ++.|||+++|+.++.
T Consensus 234 ~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~ 304 (436)
T TIGR01923 234 PLIEEAQQY-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK 304 (436)
T ss_pred HHHHHHHHh-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence 999988764 99999999999998876655443322223589999999999854 222 157999999999999
Q ss_pred cccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 478 gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+++++.+...+.+|||+|||+|++++||.+++.||.+|++++ +|.+++|.+||++|.++|.|.|
T Consensus 305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~ 370 (436)
T TIGR01923 305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQE 370 (436)
T ss_pred hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeE
Confidence 99998888877778899999999999999999999999999997 7999999999999999999864
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=417.56 Aligned_cols=379 Identities=19% Similarity=0.150 Sum_probs=278.4
Q ss_pred ecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh------hHhhcccccccccccEEEEecC
Q 009090 108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS 181 (544)
Q Consensus 108 ~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 181 (544)
++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++... ..+..... . .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence 5899999999999999999999999999999999999999999999986421 11111110 0 01112222111
Q ss_pred CchHHHHHHhhCCceeeeHHHHHhcccc------cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhh
Q 009090 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255 (544)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~ 255 (544)
.... .........+|+++...... .........++++++|+|||||||.||||.+||++++.........
T Consensus 79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 0000 00000012345555422110 0111112356899999999999999999999999988766544333
Q ss_pred hhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHH
Q 009090 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333 (544)
Q Consensus 256 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~ 333 (544)
+ ++..+|++++..|++|..++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.....
T Consensus 155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~ 229 (499)
T PLN03051 155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA 229 (499)
T ss_pred c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence 3 67789999999999999987767778999999998864 7889999999999999999999998875421000
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc--CCce
Q 009090 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL 411 (544)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~i 411 (544)
....++ ++||.+++||+++++++.+++++.+ +..+
T Consensus 230 -----------------------------------~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 230 -----------------------------------MEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred -----------------------------------cccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 001112 3899999999999999998888743 4789
Q ss_pred EEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCc--cccccCChhhhhhc
Q 009090 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES 489 (544)
Q Consensus 412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v--~~gy~~~~~~~~~~ 489 (544)
++.||+||++..+...........+++|+|.++++++|+| +++...+.+.++.|||+++||.+ +.||++++ .+ +.
T Consensus 267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~ 343 (499)
T PLN03051 267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV 343 (499)
T ss_pred EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence 9999999987544332222222347899999999999999 55554444333689999999976 57999765 33 33
Q ss_pred ccCC----------ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhc-CCCccC
Q 009090 490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIED 544 (544)
Q Consensus 490 ~~~g----------~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~-~~~V~~ 544 (544)
+.+| ||+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+ ||+|.|
T Consensus 344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~ 408 (499)
T PLN03051 344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAE 408 (499)
T ss_pred eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcce
Confidence 4344 6899999999999999999999999997 8999999999999996 999975
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=437.70 Aligned_cols=423 Identities=14% Similarity=0.147 Sum_probs=310.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|+++++++|+++|+++. + +.+||.||.++++++|+.|++.|+++||+|+++++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45568999999999999999999864 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
+||+++|++++|++|. .++.++++.++++++|++++....+... ...++.++........ ........
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~--~~~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLD--LPDDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccccc--CCcchhhh
Confidence 9999999999999984 6899999999999999987766554221 1233333321100000 00000001
Q ss_pred eHHHHHhcccccc--cccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 199 SWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 199 ~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
.++++.......+ .......++++++|+|| ||||.||++.++|.+...........+ .+..+|++++..|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence 1111110000000 01112236889999999 578888888888877655444333333 678899999999999
Q ss_pred HHHHHHHHHHH-HHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 277 ~~~g~~~~~~~-l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
|.+++...+.+ +..|+++++.+. ++..+++.++++++|+++++|+++..|++....
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~---------------------- 714 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF---------------------- 714 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence 99998865554 555666666554 899999999999999999999999887642100
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCCCcc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
... ..+++|.++ | +.+++++.++|.+.++ +++++.||+||++..... .. ..
T Consensus 715 ---------------~~~--------~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~-~~--~~ 766 (994)
T PRK07868 715 ---------------VLH--------GNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN-VS--GA 766 (994)
T ss_pred ---------------ccC--------CCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeecccccccccc-cC--CC
Confidence 000 113788876 3 3499999999999986 789999999998765432 21 23
Q ss_pred ccCccCcCccCc-eEEEeec---------CCCCC-CCCCCCCCCeEEEecCCccccccCChhhh--hhcc--cCCccccC
Q 009090 434 MVGTAGPVSVYS-ELRLEEV---------PEMGY-SPLDDPPCGEVCVRGKTLFSGYYKNPDLT--RESI--IDGWFHTG 498 (544)
Q Consensus 434 ~~~~~G~~~~~~-~v~i~~~---------~~~~~-~~~~~g~~Gei~v~~~~v~~gy~~~~~~~--~~~~--~~g~~~TG 498 (544)
..+++|+|+|++ +++|... ++.+. ..++.|+.|||+++++... +|+.+ ...| .+|||+||
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI-----DPTASVKRGVFAPADTWISTE 841 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC-----ChhhhhHhcccccCCEEEecc
Confidence 447999999998 7777531 11221 3456788999999997542 34332 2234 37999999
Q ss_pred ceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 499 Dlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++|+||+|+++||.||+|++ +|.+|+|.|||++|.+||+|+|
T Consensus 842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~ 886 (994)
T PRK07868 842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDL 886 (994)
T ss_pred ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeE
Confidence 99999999999999999999997 7889999999999999999975
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=365.24 Aligned_cols=430 Identities=19% Similarity=0.185 Sum_probs=333.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|..+++++|+++|+++. +. .+++||+|+.++++++|+.|...|++.||+|+++|+|.+++++++
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 45789999999999999999999987 32 258999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
||++++|++.+.|++++..+.|.|.|+.++++.+|++.+....+.+...........+...+... ...
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~------------~~~ 214 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTS------------VPD 214 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCC------------CCc
Confidence 99999999999999999999999999999999999999998877666332222222222222111 122
Q ss_pred eHHHHHhccc---ccc---cccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEe
Q 009090 199 SWDEFLHLGK---VNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (544)
Q Consensus 199 ~~~~l~~~~~---~~~---~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (544)
..++|...-+ ..+ .........++++.+|||||||.||+.+++|......+..+...+ +++.+|+++..
T Consensus 215 g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~ 289 (649)
T KOG1179|consen 215 GIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTT 289 (649)
T ss_pred hHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEc
Confidence 2334443222 122 222344678899999999999999999999999888888777766 89999999999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009090 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (544)
Q Consensus 273 ~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
+|++|+.|.+. +..++..|+|+++-.. ++.++++.-.+|.+|++...-.+.+.|+.......+
T Consensus 290 lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e--------------- 354 (649)
T KOG1179|consen 290 LPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE--------------- 354 (649)
T ss_pred chhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh---------------
Confidence 99999999886 6668999999999887 999999999999999999999998888764322111
Q ss_pred HHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCc-eEEeeccccccCceeeccC
Q 009090 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP 429 (544)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~YG~tE~~~~~~~~~~ 429 (544)
..+++|.++-.| +.++..+.|.++||.. |.+.||+||+....... .
T Consensus 355 ------------------------------r~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d 401 (649)
T KOG1179|consen 355 ------------------------------RQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-D 401 (649)
T ss_pred ------------------------------cCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeeee-c
Confidence 113788877555 9999999999999865 99999999987544332 2
Q ss_pred CCccccCccCcCc------cCceEEEeec--------CCCCCCCCCCCCCCeEEEe--cCCc---cccccCChhhhhhc-
Q 009090 430 DEMCMVGTAGPVS------VYSELRLEEV--------PEMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES- 489 (544)
Q Consensus 430 ~~~~~~~~~G~~~------~~~~v~i~~~--------~~~~~~~~~~g~~Gei~v~--~~~v---~~gy~~~~~~~~~~- 489 (544)
+ ..+.+|+.. --.++--+|. .++-..+++.||.|.+.-+ ...- +.||.++.+.+.+.
T Consensus 402 ~---~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl 478 (649)
T KOG1179|consen 402 G---RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKL 478 (649)
T ss_pred C---ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhh
Confidence 1 113333311 1122222221 2233356778899966433 2223 78999977666443
Q ss_pred ----cc--CCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 490 ----II--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 490 ----~~--~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|. |-||.|||+-..|+.|++||.+|..|++.+ .|++|+..|+|.+|..+..++|
T Consensus 479 ~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~d 538 (649)
T KOG1179|consen 479 LRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQD 538 (649)
T ss_pred HHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccc
Confidence 43 449999999999999999999999999999 7999999999999988776654
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=385.23 Aligned_cols=333 Identities=15% Similarity=0.125 Sum_probs=284.2
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE
Q 009090 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (544)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~ 154 (544)
+++||.||.++++++|+.|. .|+++|++|+++++|+.+++++++||+++|++++|+++..+.+++..+++.++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 58999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCC
Q 009090 155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD 234 (544)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~ 234 (544)
++.... . . ......++++++++|||||||.
T Consensus 86 ~~~~~~----------------~--~--------------------------------~~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 86 GESDFT----------------K--L--------------------------------EAVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred cCcccc----------------c--c--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence 753110 0 0 0001246789999999999999
Q ss_pred CceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhC
Q 009090 235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK 312 (544)
Q Consensus 235 pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~ 312 (544)
||+|.+||+++...+..+...+ ....+|+++...|++|.+|+.. .+.++..|+++++.+. ++..+++.+++++
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~ 190 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP 190 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence 9999999999998888776655 6778899999999999999865 6668999999998876 8999999999999
Q ss_pred CcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcC
Q 009090 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392 (544)
Q Consensus 313 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 392 (544)
+|+++++|.++..+.+.... ..+++.++++|
T Consensus 191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G 221 (414)
T PRK08308 191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG 221 (414)
T ss_pred CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence 99999999999887542110 01678999999
Q ss_pred CCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec
Q 009090 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG 472 (544)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~ 472 (544)
+++++++.+.+++. +.++++.||+||++.+.... .....+++|+|+|++++++.+ + .++.|||++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~---~~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~ 288 (414)
T PRK08308 222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP---DMKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM 288 (414)
T ss_pred CCCCHHHHHHHHHh-CChhhhccCccccCCeeecC---CCCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence 99999999999887 67899999999998644322 122347899999999999865 2 23579999985
Q ss_pred CCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 473 ~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
. ++||+|||+|++++||++++.||.+|+|++ +|++|+|.+||++|.++|+|.|
T Consensus 289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~ 341 (414)
T PRK08308 289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQE 341 (414)
T ss_pred C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence 2 579999999999999999999999999997 7999999999999999999864
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=332.01 Aligned_cols=409 Identities=22% Similarity=0.242 Sum_probs=331.6
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.+.|...+..+|+++|++.. + ..+||.|+..+++++|+.|.+.|+.++++|+++++.+.+++++++|
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~----~-----~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ 296 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRG----G-----QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA 296 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence 478999999999999999888753 2 5799999999999999999999999999999999889999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
++++|+.++|++|.++.+.+..+++.+++..+++............ . +..+...
T Consensus 297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~----------------- 350 (642)
T COG1020 297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLP-----G----LALDDAL----------------- 350 (642)
T ss_pred HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCC-----c----ccccccc-----------------
Confidence 9999999999999999999999999999999998833221110000 0 1111100
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.... ..........+++.+|++|||||||.||||..+|+++.+........+ .....|+++...++.+...
T Consensus 351 ---~~~~-~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~ 421 (642)
T COG1020 351 ---SEIP-DTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDAS 421 (642)
T ss_pred ---ccCC-ccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchh
Confidence 0000 000011234568999999999999999999999999999777766655 7888999999999987777
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
....+.++..|+.+++.+. ++..+.+.+.++++|++..+|..+..+......... .+
T Consensus 422 ~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-~~------------------ 482 (642)
T COG1020 422 VFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL-IS------------------ 482 (642)
T ss_pred HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-cC------------------
Confidence 7788899999999999875 899999999999999999999998887653110000 00
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc--CCceEEeeccccccCceeeccCCCccc
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM 434 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~ 434 (544)
..+.+|.+++||+.++.++...+.... ...+.+.||.||+..............
T Consensus 483 ------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~ 538 (642)
T COG1020 483 ------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE 538 (642)
T ss_pred ------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC
Confidence 001489999999999999999888765 468999999999776555443222111
Q ss_pred -cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCC-ccccCceEEEccCCcEEEE
Q 009090 435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG-WFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 435 -~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g-~~~TGDlg~~~~~g~l~~~ 512 (544)
...+|+|+++..++|++ ....+++.+..||+++.|.++..||+++++.+.+.|... +|+|||++++..||.+.++
T Consensus 539 ~~~piG~p~~n~~~~ild---~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~l 615 (642)
T COG1020 539 SRVPIGRPVANTQLYILD---QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYL 615 (642)
T ss_pred CCCCcceeeCCCeEEEEC---CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEe
Confidence 35899999999999988 344666677889999999999999999999999999654 9999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAP 540 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~ 540 (544)
||.|+++|+ .|+++.+.+||..+.++|
T Consensus 616 gr~D~qvki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 616 GRKDSQVKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred ccccceeEe-ceEecCcHHHHHHHhcCC
Confidence 999999998 699999999999999876
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=289.81 Aligned_cols=246 Identities=25% Similarity=0.357 Sum_probs=202.2
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEE
Q 009090 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG 295 (544)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~ 295 (544)
...++++++++|||||||.||+|.++|+++...+...... +...++++...|++|..++...+.++..|++++
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v 103 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV 103 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence 3457899999999999999999999999998887765433 234578899999999999887778888999888
Q ss_pred Eec--C--ChhhHHHHhhhhC--CcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHH
Q 009090 296 YYH--G--DLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369 (544)
Q Consensus 296 ~~~--~--~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (544)
+.. . ++..+.+.+++++ .++...+|..+..++.....
T Consensus 104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~------------------------------------- 146 (358)
T PRK07824 104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA------------------------------------- 146 (358)
T ss_pred ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence 732 2 8899999999998 45556677766554321000
Q ss_pred HHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEE
Q 009090 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL 449 (544)
Q Consensus 370 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i 449 (544)
. ...+++|.+++||+++++++.+++.+. ++++++.||+||++..+. ..|.|.+++++++
T Consensus 147 -~--------~~~~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i 205 (358)
T PRK07824 147 -T--------AALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRV 205 (358)
T ss_pred -c--------CCcccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCcC-----------cCceeCCCCEEEe
Confidence 0 011389999999999999999998864 999999999999876432 3578999999998
Q ss_pred eecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceec
Q 009090 450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528 (544)
Q Consensus 450 ~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~ 528 (544)
.+ |||+++|+.++.||+++++.. .| .+|||+|||+|++ ++|.+++.||.||+|++ +|++|+
T Consensus 206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~ 267 (358)
T PRK07824 206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL 267 (358)
T ss_pred cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence 43 999999999999999988643 33 6789999999999 89999999999999997 899999
Q ss_pred hHhHHHHhhcCCCccC
Q 009090 529 LEYLENVYCVAPIIED 544 (544)
Q Consensus 529 ~~~iE~~l~~~~~V~~ 544 (544)
|.+||++|.+||+|++
T Consensus 268 p~eIE~~l~~~~~V~~ 283 (358)
T PRK07824 268 PQVVEAALATHPAVAD 283 (358)
T ss_pred HHHHHHHHHhCCCcce
Confidence 9999999999999975
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=256.72 Aligned_cols=470 Identities=14% Similarity=0.125 Sum_probs=331.0
Q ss_pred ccccCCCCCCCCCCcCcceeccccCCCCCCC---------CCCc----ccHHHHHHHHHHcCCCCCceEeecccCCCCCC
Q 009090 7 QVEEGKEGKDGKPSVGPVYRNLLASNGFPSV---------DSDL----NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGP 73 (544)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~ 73 (544)
+.++.+|.+=++ .|..++|.-++..++.. +++. .++.++|++.++++|+++|+... ++.+.+
T Consensus 724 pi~~~~~~gi~~--As~~~~nivs~~rlq~s~~~d~~~~~d~~~~~kl~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~ 798 (1363)
T KOG3628|consen 724 PIPREKQPGIWS--ASVMVGNIVSGKRLQQSGGRDRGNIVDNDSERKLLTILEILQWRAAKTPDHIAFTTL---NARGAT 798 (1363)
T ss_pred CCchhhcccccc--HHHHHHhhhcchhhhhcccccccccccchhhhHHHHHHHHHHHHhhcCCCceEEEEe---ccCCcc
Confidence 445555555554 77777777777655532 2222 78999999999999999999987 877778
Q ss_pred ceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCCh------hHHHHHHHh
Q 009090 74 YVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP------GAVNFILDH 146 (544)
Q Consensus 74 ~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~------~~l~~~l~~ 146 (544)
..++||.+|.+++.+++.+|.++ -+++||.|++++++++|++++++||+.+|.+++|+.|.... .++..+++.
T Consensus 799 ~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~ 878 (1363)
T KOG3628|consen 799 KKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKV 878 (1363)
T ss_pred cceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHH
Confidence 89999999999999999999977 68999999999999999999999999999999999876432 478899999
Q ss_pred cCceEEEEccchhhHhhccccccccc---ccEEEEecCCchHHHHHHhhCCceeeeHHHHHhccccc--ccccCCCCCCC
Q 009090 147 AEIDFVFVQDKKVKELLSPDCRSAQR---LRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN--EMEILPPQPFN 221 (544)
Q Consensus 147 ~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 221 (544)
.++..|+++.+....+.+.......+ +..++..++... .|.......... ..++.......
T Consensus 879 ~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~--------------t~~k~~~~~~k~~~~~~~g~~~k~~ 944 (1363)
T KOG3628|consen 879 YKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE--------------TIRKRKKNIKKLNTPTPPGLNNKET 944 (1363)
T ss_pred hhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch--------------hhhhhhhhhhccCCCCCccccCCCc
Confidence 99999999988766554433221111 122222222110 122211111111 12223346678
Q ss_pred eEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEEEecC-
Q 009090 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG- 299 (544)
Q Consensus 222 ~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~- 299 (544)
+|++.+.--++|.--++.+||..+++.++...+.+ .+.+...++...+.+...|+. .++..++.|...+++++
T Consensus 945 ~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~ 1019 (1363)
T KOG3628|consen 945 PALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPM 1019 (1363)
T ss_pred eEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHH
Confidence 99999999999999999999999999999999988 677788888888888888877 48888999999888775
Q ss_pred ----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHH
Q 009090 300 ----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375 (544)
Q Consensus 300 ----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (544)
++.-|+..++++++.-++.+-..+..+.+.+...-+....
T Consensus 1020 ~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~------------------------------------ 1063 (1363)
T KOG3628|consen 1020 DLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSK------------------------------------ 1063 (1363)
T ss_pred HhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhh------------------------------------
Confidence 8999999999999999999888888776644433221110
Q ss_pred HHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc---CC---ceEEeeccccccCceeeccCC-------------------
Q 009090 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCGPTTVCFPD------------------- 430 (544)
Q Consensus 376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~i~~~YG~tE~~~~~~~~~~~------------------- 430 (544)
..... +...++..-+.....+.+.|.+.+ |. .+--.|+.-=--.+|.....+
T Consensus 1064 -~gnn~--s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~ 1140 (1363)
T KOG3628|consen 1064 -RGNNT--SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVR 1140 (1363)
T ss_pred -hhccc--ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhcccee
Confidence 00000 113344445555555666555554 21 133333332221122111000
Q ss_pred -------CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhh-hhhcc----------cC
Q 009090 431 -------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL-TRESI----------ID 492 (544)
Q Consensus 431 -------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~-~~~~~----------~~ 492 (544)
........|...+++++.|++ + ++..++.+|+.||||+.|.+.+.+|++..+. ....| ..
T Consensus 1141 ~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-P-Etk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~ 1218 (1363)
T KOG3628|consen 1141 LVEVGAPHSLLLYDSGKLPVYTDIAIVN-P-ETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGK 1218 (1363)
T ss_pred eeecCCCCccccccCCcccccceeEEeC-C-ccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccc
Confidence 001113458888999999999 4 4557888999999999999888877654222 11112 13
Q ss_pred CccccCceEEEcc------C----CcEEEEeeccceeecCCCceechHhHHHHhh-cCCCc
Q 009090 493 GWFHTGDIGQILP------N----GVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPII 542 (544)
Q Consensus 493 g~~~TGDlg~~~~------~----g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~-~~~~V 542 (544)
+|.||||+|++.. + .-||++|-.++.+.+ +|-+.+|.+||+.+. .||.|
T Consensus 1219 sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I 1278 (1363)
T KOG3628|consen 1219 SYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSI 1278 (1363)
T ss_pred cceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccc
Confidence 5999999999842 2 479999999999999 799999999999886 56665
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=261.22 Aligned_cols=260 Identities=20% Similarity=0.206 Sum_probs=194.9
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEEE
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGY 296 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~ 296 (544)
..++++++++||||||.||++.++|.++..........+.. .+..++|++++..++.+..+.. ..+.+...|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 45678889999999999999999999987664443332211 1567889988876654333322 34446778988887
Q ss_pred ecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHH
Q 009090 297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375 (544)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (544)
.+. ++..+++.|++++||+++++|+++..|++.........
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~-------------------------------------- 192 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP-------------------------------------- 192 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence 665 78899999999999999999999999876443211000
Q ss_pred HHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccC--ceeeccCCCccccCccCcCc--cCceEEEee
Q 009090 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG--PTTVCFPDEMCMVGTAGPVS--VYSELRLEE 451 (544)
Q Consensus 376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~--~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~ 451 (544)
...++|.++++|+++++++.+.+++.||+++++.||+||+++ +...+.. ...|.++ ++..++|+|
T Consensus 193 -----~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd 261 (422)
T TIGR02155 193 -----AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIID 261 (422)
T ss_pred -----ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc------cCCCceEecCeeEEEEEC
Confidence 002799999999999999999999999999999999999853 2222211 1123333 356667777
Q ss_pred cCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC-C-----cEEEEeeccceeecCCCc
Q 009090 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGE 525 (544)
Q Consensus 452 ~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-g-----~l~~~GR~~d~i~~~~g~ 525 (544)
++ +..++++|+.|||++++. +...|+.+||+|||+|+++++ | .+++.||.+|+|++ +|.
T Consensus 262 -~~-~g~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~ 326 (422)
T TIGR02155 262 -PH-TGEVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGV 326 (422)
T ss_pred -CC-CCCCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCE
Confidence 33 335567889999999973 234456789999999999876 4 46899999999998 799
Q ss_pred eechHhHHHHhhcCCCcc
Q 009090 526 YVALEYLENVYCVAPIIE 543 (544)
Q Consensus 526 ~v~~~~iE~~l~~~~~V~ 543 (544)
+|+|.+||++|.+||+|.
T Consensus 327 ~v~p~eie~~l~~~~~v~ 344 (422)
T TIGR02155 327 NVFPTQLEEVILKMDELS 344 (422)
T ss_pred EECHHHHHHHHHhCcCcC
Confidence 999999999999999985
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=253.02 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=176.3
Q ss_pred CCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC--CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 009090 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY 296 (544)
Q Consensus 220 ~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~ 296 (544)
+..++++|||||||.||+|.+||+++.+.+..+...+ ++ ...+++++.+|++|.+|+.. .+.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 4578999999999999999999999998887766654 44 33468999999999999764 5667889999988
Q ss_pred ecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHH
Q 009090 297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375 (544)
Q Consensus 297 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (544)
... ++..+++.++.+ |+++++|.+++.+.+.. .
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~---------------------------------------- 203 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y---------------------------------------- 203 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c----------------------------------------
Confidence 765 777788777653 89999999998875420 0
Q ss_pred HHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-ceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCC
Q 009090 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454 (544)
Q Consensus 376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~ 454 (544)
..+++|. +++|+++++++.+.+++. +. .+++.||+||++++++...+ .+.|.+.|+.++++ + +
T Consensus 204 -----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~-~--~ 267 (386)
T TIGR02372 204 -----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA-D--T 267 (386)
T ss_pred -----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC-C--C
Confidence 0126775 678999999999999886 64 69999999999876554321 34567777766543 1 1
Q ss_pred CCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHH
Q 009090 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534 (544)
Q Consensus 455 ~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~ 534 (544)
+. + .|+ ..|++|||+|++|++|++++.||.||+|++ +|++|+|.+||+
T Consensus 268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~ 315 (386)
T TIGR02372 268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD 315 (386)
T ss_pred cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence 00 0 011 125889999999999999999999999997 899999999999
Q ss_pred HhhcCCCccC
Q 009090 535 VYCVAPIIED 544 (544)
Q Consensus 535 ~l~~~~~V~~ 544 (544)
+|.+||+|.|
T Consensus 316 ~l~~~p~V~~ 325 (386)
T TIGR02372 316 ILERNPRVRA 325 (386)
T ss_pred HHHcCCCceE
Confidence 9999999875
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=228.77 Aligned_cols=258 Identities=18% Similarity=0.148 Sum_probs=185.5
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY 296 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~ 296 (544)
..++++.+++||||||.||+|.+||.++..........+.. .++.++|+++...+..+..+... ...+...|++++.
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~ 161 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP 161 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence 45678899999999999999999999988776554443322 25778899999988877665544 4456778887653
Q ss_pred ecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHH
Q 009090 297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376 (544)
Q Consensus 297 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (544)
. +.....++.++++++|.+.++|..+..+++.+.+.....
T Consensus 162 ~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~--------------------------------------- 201 (445)
T TIGR03335 162 E-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP--------------------------------------- 201 (445)
T ss_pred C-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc---------------------------------------
Confidence 3 344567889999999999999998887765433221000
Q ss_pred HHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCc--cCceEEEeecCC
Q 009090 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS--VYSELRLEEVPE 454 (544)
Q Consensus 377 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~~~~ 454 (544)
...++|.+++||+++++++.+++.+.||+++++.||+||++. +..+.. ..|.++ +...+.|+| +
T Consensus 202 ----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~-------~~g~h~~~d~~~vEIvD-p- 267 (445)
T TIGR03335 202 ----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQA-------VAGLHVPEDLVHLDVYD-P- 267 (445)
T ss_pred ----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecC-------CCCccccCCceEEEEEc-C-
Confidence 002799999999999999999999999999999999999863 332211 123333 356778887 4
Q ss_pred CCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc-C----C----cEEEEeeccceeecCCCc
Q 009090 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQGE 525 (544)
Q Consensus 455 ~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~----g----~l~~~GR~~d~i~~~~g~ 525 (544)
++..++++|+.|||++++-..... ++.++==-|+|||++++.. + | ++...||.||++++ .|.
T Consensus 268 ~~~~~vp~Ge~GELvvT~L~~~~~--------r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~ 338 (445)
T TIGR03335 268 RHQRFLPDGECGRIVLTTLLKPGE--------RCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGV 338 (445)
T ss_pred CCCCCCcCCCceEEEEEecCCCCc--------cCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCE
Confidence 344567889999999997432100 0000011399999999732 2 2 24456999999999 799
Q ss_pred eechHhHHHHhhcCC
Q 009090 526 YVALEYLENVYCVAP 540 (544)
Q Consensus 526 ~v~~~~iE~~l~~~~ 540 (544)
+++|.+||++|.+++
T Consensus 339 ~~~p~~ie~~l~~~~ 353 (445)
T TIGR03335 339 PFNRVDVERAVFQRE 353 (445)
T ss_pred EeCHHHHHHHHhccC
Confidence 999999999999953
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=199.54 Aligned_cols=221 Identities=15% Similarity=0.043 Sum_probs=161.8
Q ss_pred HHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCchhHHHHHHHHHhcCC
Q 009090 48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL 126 (544)
Q Consensus 48 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~ 126 (544)
+.+.++++|+++|+++. ++..++.+++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56788899999999864 3322223679999999999999999998 6999999999999999999999999999999
Q ss_pred EEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecC--CchHHHHHHhhCCceeeeHHHHH
Q 009090 127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS--LTAEQKEMAVQTGIKPYSWDEFL 204 (544)
Q Consensus 127 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 204 (544)
+++|++ .+++++++++++....... . +.++.+.. ..... .........+|.+..
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 134 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRRV---AGELPPGVIDFAPEV 134 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccCC---CCCCCCcccchhhhh
Confidence 999994 6789999999887665421 1 12222211 00000 000011223555554
Q ss_pred hcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-
Q 009090 205 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI- 283 (544)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~- 283 (544)
........+.....++|+++++||||+ +|.+++... ..+ ++.++|+++ ..|++|.+|+..
T Consensus 135 ~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~ 195 (227)
T TIGR03089 135 RVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLAT 195 (227)
T ss_pred hccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHH
Confidence 422111111113456899999999986 666655554 222 688999999 999999999875
Q ss_pred HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCc
Q 009090 284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPT 314 (544)
Q Consensus 284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t 314 (544)
.+.++..|+++++.+. ++..+++.++++++|
T Consensus 196 ~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 196 LLAPLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 6678999999999876 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=190.27 Aligned_cols=262 Identities=22% Similarity=0.218 Sum_probs=197.0
Q ss_pred CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcE
Q 009090 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGAS 293 (544)
Q Consensus 215 ~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~ 293 (544)
.....++...+-.||||||.|+.+.+++.++..++..+.+.+... +...+|++....-. .+..|+.....+--.|++
T Consensus 85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~ 162 (438)
T COG1541 85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGAT 162 (438)
T ss_pred ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEE
Confidence 334556677789999999999999999999999998888877433 56777777655442 122333344445556777
Q ss_pred EEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHH
Q 009090 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (544)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (544)
++-... +....+++++.+++|++.++|+.+..|++.+++.+. . .+.
T Consensus 163 vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~-~-------------------------------~~~- 209 (438)
T COG1541 163 VIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI-D-------------------------------PDK- 209 (438)
T ss_pred EEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC-C-------------------------------hhh-
Confidence 665554 899999999999999999999999999988776631 0 011
Q ss_pred hHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCce-eeccCCCccccCccCc--CccCceEEE
Q 009090 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGP--VSVYSELRL 449 (544)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~-~~~~~~~~~~~~~~G~--~~~~~~v~i 449 (544)
.++|.+++|+|++++++.+.+.+.||+..++.||+||..+.. ..+.... |- ..+...+.|
T Consensus 210 ----------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-------glhi~eD~~~~Ei 272 (438)
T COG1541 210 ----------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-------GLHIWEDHFIFEI 272 (438)
T ss_pred ----------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-------CCCcchhhceeee
Confidence 289999999999999999999999999999999999997774 3332221 22 223455566
Q ss_pred eecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC----C-----cEEEEeeccceee
Q 009090 450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----G-----VVKIIDRKKNLIK 520 (544)
Q Consensus 450 ~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----g-----~l~~~GR~~d~i~ 520 (544)
+| +.+...+++|+.|||.++.-. ++.++==-|+|||++.+.++ | ...+.||.||+++
T Consensus 273 ~d--P~t~e~l~dge~GelV~T~L~------------~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~ 338 (438)
T COG1541 273 VD--PETGEQLPDGERGELVITTLT------------KEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLI 338 (438)
T ss_pred ec--CCcCccCCCCCeeEEEEEecc------------ccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEE
Confidence 66 345567788899999998722 11111124999999999763 2 3468899999999
Q ss_pred cCCCceechHhHHHHhhcCCCcc
Q 009090 521 ISQGEYVALEYLENVYCVAPIIE 543 (544)
Q Consensus 521 ~~~g~~v~~~~iE~~l~~~~~V~ 543 (544)
+ .|.+|+|..||++|.+.+++.
T Consensus 339 ~-~G~~vfp~~ie~~l~~~~~~~ 360 (438)
T COG1541 339 V-RGVNVFPSQIERVLLQIPEVT 360 (438)
T ss_pred E-CCEEeCHHHHHHHHhcccCCC
Confidence 9 599999999999999999875
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-22 Score=210.89 Aligned_cols=438 Identities=19% Similarity=0.121 Sum_probs=268.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
..+.++...+...+...|...+..+.+. ....+.....||.+....++.+++.|...|...|+.|++++..+.++++..
T Consensus 33 ~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v 111 (1032)
T KOG1178|consen 33 QFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSV 111 (1032)
T ss_pred hhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeee
Confidence 4566778899999999999998887765 456677789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCC----hhHHHHH---HHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 119 EACNALSLICVPLYDTLG----PGAVNFI---LDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~----~~~l~~~---l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
++++++|..+++++|.++ ++.+..+ +...... +........+ .........
T Consensus 112 ~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~--i~~~l~i~~~---~~~~~~~~~----------------- 169 (1032)
T KOG1178|consen 112 FAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELE--IVRRLNIIDI---LLNSLFPKL----------------- 169 (1032)
T ss_pred eehhhcceEEEEecCCCcccccchHHHhhhhhheeccce--ehhhhhhHHH---Hhhcccccc-----------------
Confidence 999999999999999998 3322211 1111111 1111100000 000000000
Q ss_pred hCCceeeeHHHHHhcc-ccccc-ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEE
Q 009090 192 QTGIKPYSWDEFLHLG-KVNEM-EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (544)
.....++.++.. ..... ......++..+++.||||+||.||+|..+|..+.+...+....+ .....+++
T Consensus 170 ----sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~ 240 (1032)
T KOG1178|consen 170 ----SVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRF 240 (1032)
T ss_pred ----chhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchh
Confidence 000001111111 11111 22234667789999999999999999999999999998877665 56666654
Q ss_pred EEecChHHHHHHHHHHHH-HHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHH
Q 009090 270 LSFLPLAHILDRVIEEYF-FRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (544)
Q Consensus 270 l~~~p~~~~~g~~~~~~~-l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
-.....+..........+ +..|+.+..+.. ++..+...+.+++++..+.+|++.+.++.........+.
T Consensus 241 ~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~------ 314 (1032)
T KOG1178|consen 241 TFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLE------ 314 (1032)
T ss_pred hhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhh------
Confidence 222222111222233344 555555555433 578999999999999999999998888764332100000
Q ss_pred HHHHHHHHHHHHhcccCcCCcchH-HHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccC
Q 009090 345 FDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCG 422 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~ 422 (544)
+.. ...+ ..--+.|+....+|++....+...+...+ ......-|++++..+
T Consensus 315 ---------------------~~~~~~dl------~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~ 367 (1032)
T KOG1178|consen 315 ---------------------HAFSLSDL------LTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTG 367 (1032)
T ss_pred ---------------------hhhhcccc------cccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCcc
Confidence 000 0000 00003789999999999999888666655 222333399998887
Q ss_pred ceeeccCCC---ccccCccCcCccC-------ceEEEeecCCCCC--CCCCCCCCCeEEEecCCccccccCChhhhhh--
Q 009090 423 PTTVCFPDE---MCMVGTAGPVSVY-------SELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE-- 488 (544)
Q Consensus 423 ~~~~~~~~~---~~~~~~~G~~~~~-------~~v~i~~~~~~~~--~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~-- 488 (544)
.+....-.. ......+..+..+ ....+.. ..++. ..++-++.|.....+..+..| +..++....
T Consensus 368 ~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~ 445 (1032)
T KOG1178|consen 368 LVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNF 445 (1032)
T ss_pred ceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcc
Confidence 666543211 0000111111111 1111111 11111 111111112222222333333 222222111
Q ss_pred cc----cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 489 SI----IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 489 ~~----~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+ .+.+|+|||+|+.-++|.+.+.||.|++||+ +|.++...+|++++..||.|++
T Consensus 446 ~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~ 504 (1032)
T KOG1178|consen 446 LTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKE 504 (1032)
T ss_pred cccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhh
Confidence 11 2348999999999899999999999999998 7999999999999999998864
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=181.87 Aligned_cols=431 Identities=15% Similarity=0.121 Sum_probs=292.1
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEecCc--hhHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWVE 116 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~gl~~gd~V~l~~~n~--~~~~~ 116 (544)
.+..+..++++.-.+++...|.++. | ++|....+||..+..++++.|+ .|.+.|+.++|+|.+++..+ +++++
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i---d-~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i 167 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI---D-KKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI 167 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE---c-CCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence 5566778888888899999999998 5 4555899999999999999999 67788999999999999876 89999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
..++|..+|.+++|+++..+.+++..+++....++++................ ++ .....+......+
T Consensus 168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--s~----------~k~v~~w~t~~~k 235 (1363)
T KOG3628|consen 168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--SL----------AKAVAWWKTNDFK 235 (1363)
T ss_pred hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--cH----------HHHHHhhhccccc
Confidence 99999999999999999999999999999999999999887766553322000 00 0000000000000
Q ss_pred -eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhh---------------hccc
Q 009090 197 -PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL---------------DQFE 260 (544)
Q Consensus 197 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~---------------~~~~ 260 (544)
.+.++ ....++..-. .++|.||++++|.--|++.+|+ ++.+.+.+...+ ....
T Consensus 236 ~~~~~~---------k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 236 GNYTKD---------KIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred ceeehh---------hccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 11111 1111222223 7899999999999999999998 555544433222 1111
Q ss_pred CCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHH
Q 009090 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335 (544)
Q Consensus 261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~ 335 (544)
.+....+.++.........|+++ .+.++++|.+...++. .+..+...+-+++.++++.....++.....
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~n------ 378 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYN------ 378 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCccccc------
Confidence 23355677777777777888886 6678999999998876 788899999999999999876666554321
Q ss_pred hhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc----CCc-
Q 009090 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----CAF- 410 (544)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----~~~- 410 (544)
++..+.. .++|++....+.+++|.+++....++.+..+-....+ |..
T Consensus 379 ---------------------------y~~~p~a-~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~ 430 (1363)
T KOG3628|consen 379 ---------------------------YQEDPKA-TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN 430 (1363)
T ss_pred ---------------------------ccCCccc-ccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence 1121111 1233333444567999999999999988554333332 211
Q ss_pred -----------------eEEeeccccccCceeeccCCCc-----------------------------cccCccCcCccC
Q 009090 411 -----------------LVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY 444 (544)
Q Consensus 411 -----------------i~~~YG~tE~~~~~~~~~~~~~-----------------------------~~~~~~G~~~~~ 444 (544)
...+=++.|.+......+.... .....+|..+|+
T Consensus 431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g 510 (1363)
T KOG3628|consen 431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG 510 (1363)
T ss_pred cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence 1222233455544443332100 122355667777
Q ss_pred ceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------------CCccccCceEEEccCCcEEE
Q 009090 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------DGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 445 ~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------------~g~~~TGDlg~~~~~g~l~~ 511 (544)
.-.-.+- +++....|..+++|||||.++++..+||.-+..+...|. ..|.|||-+|++.+++ +|+
T Consensus 511 ~~t~~vv-~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gk-i~v 588 (1363)
T KOG3628|consen 511 DATLAVV-NPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGK-IYV 588 (1363)
T ss_pred ceEEEEe-CCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCe-EEE
Confidence 3333333 677888888999999999999999999998888877762 1389999999997544 555
Q ss_pred Eeeccc-eeecCCCceechHhHHH
Q 009090 512 IDRKKN-LIKISQGEYVALEYLEN 534 (544)
Q Consensus 512 ~GR~~d-~i~~~~g~~v~~~~iE~ 534 (544)
+|-.+| +..+ .|...+..+|-+
T Consensus 589 l~~k~d~llq~-~~~~h~~d~iv~ 611 (1363)
T KOG3628|consen 589 LGLKEDGLLQV-SGWRHNADDIVA 611 (1363)
T ss_pred EEechhhhhhh-hhhhhhhhhhHh
Confidence 555554 4444 477666555433
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=144.57 Aligned_cols=239 Identities=16% Similarity=0.154 Sum_probs=148.3
Q ss_pred EEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEe--cChHHHHHHHHHHHHHHc-CcEEEEe--
Q 009090 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF--LPLAHILDRVIEEYFFRR-GASVGYY-- 297 (544)
Q Consensus 223 ~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~--~p~~~~~g~~~~~~~l~~-G~~~~~~-- 297 (544)
..+..||||||.|-.+..+..............+... +...++++... .+. +.+.. +.. ...+-..
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~--g~~~g~r~a~~~~~~~-~ly~~------~~~~~~~~~~~~l 172 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD--GLFAKHRIAFFLRADN-NLYQS------VNNRWISLDFFDL 172 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc--ccccCCcEEEEEccCh-hHHHH------HHhccceeeecCC
Confidence 4566899999999999999987655444333322221 23344444333 222 11111 111 1111111
Q ss_pred cCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHH
Q 009090 298 HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377 (544)
Q Consensus 298 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (544)
..+.+.+++.|.+++|+++.+.|+.+..|++...+....
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~----------------------------------------- 211 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT----------------------------------------- 211 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-----------------------------------------
Confidence 237889999999999999999999999998765432110
Q ss_pred HHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCC
Q 009090 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457 (544)
Q Consensus 378 ~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~ 457 (544)
.++|.++++||.+++++.+.+++.||++|++.||+|| |.+++.+..+.... -.-.--+|..++| ++ +
T Consensus 212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~lHl----~ed~~~vE~~ivD-~~-~- 278 (430)
T TIGR02304 212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGTLHL----NEDLVHIEKQYLD-EH-K- 278 (430)
T ss_pred -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCCEEE----ccccEEEEeeEEC-CC-C-
Confidence 1689999999999999999999999999999999999 65655554332211 0000012222444 22 1
Q ss_pred CCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC----C----cE-EEEeeccceeec--CCCce
Q 009090 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----G----VV-KIIDRKKNLIKI--SQGEY 526 (544)
Q Consensus 458 ~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----g----~l-~~~GR~~d~i~~--~~g~~ 526 (544)
.+...|++- .+. +++==-|+|||++.+.++ | .+ .+.||.+|++++ .+|..
T Consensus 279 -------~~~~ViT~L------~n~------~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~ 339 (430)
T TIGR02304 279 -------RFVPIITDF------TRT------TQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDE 339 (430)
T ss_pred -------ceEEEEecC------CCc------cceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCe
Confidence 134455541 111 011113999999988543 3 23 378999999984 34555
Q ss_pred e--chHhHHHHhh-cCCCcc
Q 009090 527 V--ALEYLENVYC-VAPIIE 543 (544)
Q Consensus 527 v--~~~~iE~~l~-~~~~V~ 543 (544)
+ +|..++.++. ..++|.
T Consensus 340 v~v~p~~~~~~i~~~~~~i~ 359 (430)
T TIGR02304 340 QTVFPDFIRRVILFTLPLIV 359 (430)
T ss_pred EEeCHHHHHHHHHhcCCCCc
Confidence 5 8888988744 567764
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=98.34 Aligned_cols=236 Identities=17% Similarity=0.215 Sum_probs=139.9
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH---HHH--HHHHHHHHcCc
Q 009090 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI---LDR--VIEEYFFRRGA 292 (544)
Q Consensus 218 ~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~---~g~--~~~~~~l~~G~ 292 (544)
.++++..++.||||||.+.-+.+.+..+......+...+......-...-.++...|-... ++. ...+.....+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 4456778889999999987677777666666655555443221111222334444444321 111 11222333444
Q ss_pred EEEEecC--ChhhHHHHh----hhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcc
Q 009090 293 SVGYYHG--DLNALRDDL----MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366 (544)
Q Consensus 293 ~~~~~~~--~~~~~~~~i----~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (544)
.-++-.. +...++..+ .+.++..+++.|.++-.++..+++......
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------- 218 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------- 218 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence 4333222 555555544 467889999999877776665444322111
Q ss_pred hHHHHHhHHHHHHHhCCcccEEEEcC------CCCCH-HHHHHHHHhcCC----ceEEeeccccccCceeeccCCCcccc
Q 009090 367 PLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCMV 435 (544)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~~-~~~~~~~~~~~~----~i~~~YG~tE~~~~~~~~~~~~~~~~ 435 (544)
+ .+..+.+-.|| +.++. +..+.+.+.||+ .+++.||+||.....+.+.....
T Consensus 219 -------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~--- 281 (365)
T PF04443_consen 219 -------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF--- 281 (365)
T ss_pred -------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc---
Confidence 0 01334455554 45654 566778888887 69999999998866555532222
Q ss_pred CccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC--------C
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------G 507 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~--------g 507 (544)
...|+ +.+.| ..+..+++.|+.|-|.+-++... .| -+..-|.|+|.+..+ .
T Consensus 282 ----~~p~w--V~iRD--p~tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g~ 340 (365)
T PF04443_consen 282 ----HVPPW--VIIRD--PETLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKGK 340 (365)
T ss_pred ----cCCCe--EEEEC--CCCCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccCC
Confidence 12233 55555 34577888899999988776443 12 233669999988654 2
Q ss_pred cEEEEeecccee
Q 009090 508 VVKIIDRKKNLI 519 (544)
Q Consensus 508 ~l~~~GR~~d~i 519 (544)
++.++||.+..=
T Consensus 341 ~f~vlGR~~~ae 352 (365)
T PF04443_consen 341 YFEVLGRADGAE 352 (365)
T ss_pred EEEEEeCCCCCc
Confidence 799999988654
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-09 Score=101.37 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=44.2
Q ss_pred ccCCccccCceEEE-ccCCcEEEEeeccceeecCCC---ceechHhHHHHhhcCCCccC
Q 009090 490 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 490 ~~~g~~~TGDlg~~-~~~g~l~~~GR~~d~i~~~~g---~~v~~~~iE~~l~~~~~V~~ 544 (544)
+.+|||+|||+|++ |+||++++.||.+ +| ++|+|. ||++|.+||+|.|
T Consensus 206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~e 257 (365)
T PRK09188 206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSD 257 (365)
T ss_pred ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccE
Confidence 47899999999998 6999999999997 57 799999 9999999999975
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=84.66 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=74.9
Q ss_pred CcccEEEEcCCCCCHHHHHHHHHhcC-Cc-eEEeeccccccCceeeccCCCccccCccCcCccCc-eEEEeecCCCC---
Q 009090 383 GRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEMG--- 456 (544)
Q Consensus 383 ~~lr~i~~~G~~l~~~~~~~~~~~~~-~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~~~~~~~--- 456 (544)
++|++|.+-+..-...-.+.+++.+| ++ +...|++||+.. .....++. ..+.+.++. =...++.++..
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i-~i~~~~~~-----~~~~l~~~~~ffEFip~~~~~~~~ 340 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFI-GIPLDPED-----PGYVLAPDSGFFEFIPVDEDEQNP 340 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEE-EEES-CCC-------EEE-TTSSEEEEEE-STT----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEE-EEecCCCC-----CceEeecCCeEEEEEeccCCcccc
Confidence 58897776555555566677777775 33 447899999633 22221111 111222222 23334422221
Q ss_pred ---C-----CCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc--CC--cEEEEeeccceeecCCC
Q 009090 457 ---Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG 524 (544)
Q Consensus 457 ---~-----~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~--~g--~l~~~GR~~d~i~~~~g 524 (544)
. ..+..|+.-||.++.. .|.|+ |+.||++++.. ++ .+.|+||.+.++.+ .|
T Consensus 341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g 403 (528)
T PF03321_consen 341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG 403 (528)
T ss_dssp ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence 1 1133455668888763 33333 99999999953 45 79999999999998 69
Q ss_pred ceechHhHHHHhhcC
Q 009090 525 EYVALEYLENVYCVA 539 (544)
Q Consensus 525 ~~v~~~~iE~~l~~~ 539 (544)
++++-.++++++.+.
T Consensus 404 Ekl~e~~v~~av~~~ 418 (528)
T PF03321_consen 404 EKLSEEQVQEAVARA 418 (528)
T ss_dssp --EEHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHH
Confidence 999999999998764
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0029 Score=66.25 Aligned_cols=141 Identities=14% Similarity=0.059 Sum_probs=81.1
Q ss_pred HHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccCcCccCceE-EEeecCCC
Q 009090 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL-RLEEVPEM 455 (544)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v-~i~~~~~~ 455 (544)
..+=+++|+|.+-..--...-...++..+ |++++ ..|++||+-...=..+..... .......|+... ..++++++
T Consensus 289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~ 366 (606)
T PLN02247 289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKN 366 (606)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCC
Confidence 34447899988754444555556666555 56655 579999953322212111111 111222333222 22221211
Q ss_pred CC---------------------------CCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEc----
Q 009090 456 GY---------------------------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL---- 504 (544)
Q Consensus 456 ~~---------------------------~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~---- 504 (544)
.. ..+..|+.-||.|+.- .|.|+ ||.||+.++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLYR-------------YrlGDvv~V~GF~n 430 (606)
T PLN02247 367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLYR-------------YRVGDILMVTGFYN 430 (606)
T ss_pred cccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecC
Confidence 10 0233445567777652 22222 9999998874
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhc
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~ 538 (544)
.--.+.|++|.+.+..+ .|+|.+-.++-+++.+
T Consensus 431 ~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 431 NAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ 463 (606)
T ss_pred CCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence 23479999999999998 7999999988877765
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.001 Score=70.20 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=37.7
Q ss_pred cccCceEEEcc----CCcEEEEeeccceeecCCCceechHhHHHHhhc
Q 009090 495 FHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 495 ~~TGDlg~~~~----~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~ 538 (544)
|+.||+.++.. -=.+.|+||.+.++.+ .|+++.-.+++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceec-ccccCCHHHHHHHHHH
Confidence 99999999953 2368999999999998 7999999999998876
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.002 Score=67.38 Aligned_cols=140 Identities=16% Similarity=0.059 Sum_probs=80.8
Q ss_pred HHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccC-cCccCceE-EEeecCC
Q 009090 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSEL-RLEEVPE 454 (544)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~~v-~i~~~~~ 454 (544)
..+=+++|+|.+-..--...-...++..+ |++++ ..|++||+-...=..+.... ..+. ...|+... ..+++++
T Consensus 300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p---~~~sy~L~p~~~yFEFip~~~ 376 (612)
T PLN02620 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKP---SEVSYTLIPTMAYFEFLPVHR 376 (612)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCc---ccceeeecCCcEEEEEeeccC
Confidence 34447899888755444555555565555 66655 57999995432212221111 1122 22233222 2222111
Q ss_pred C-C---------------------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEc----cCCc
Q 009090 455 M-G---------------------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGV 508 (544)
Q Consensus 455 ~-~---------------------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~----~~g~ 508 (544)
+ + ...+..|+.-||.|+.. .|.|+ ||.||+.++. .--.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~ 440 (612)
T PLN02620 377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQ 440 (612)
T ss_pred cccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCce
Confidence 0 0 01133455567777652 22222 9999998874 2347
Q ss_pred EEEEeeccceeecCCCceechHhHHHHhhc
Q 009090 509 VKIIDRKKNLIKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 509 l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~ 538 (544)
+.|++|.+-+..+ .|+|.+-.++-.++.+
T Consensus 441 ~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 441 FSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred EEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 9999999999998 7999999988877764
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.28 Score=49.44 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=75.2
Q ss_pred ceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch--hHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceE
Q 009090 74 YVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (544)
Q Consensus 74 ~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 151 (544)
..-+|+.|+..-+..+|+.|...|..+||+|.+...-+. .-+...+|+.++|+.++|+.+.. -+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcE
Confidence 446899999999999999999999999999999877332 22678899999999999998843 466778899999999
Q ss_pred EEEccchhhHhhc
Q 009090 152 VFVQDKKVKELLS 164 (544)
Q Consensus 152 vi~~~~~~~~~~~ 164 (544)
|.+..+++..+.+
T Consensus 186 I~~tps~~l~lae 198 (438)
T COG1541 186 IAATPSYLLYLAE 198 (438)
T ss_pred EEEChHHHHHHHH
Confidence 9999988655433
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=86.20 E-value=5 Score=41.15 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch--hHHHHHHHHHhcCCEEeecCCCCChhHHHHH
Q 009090 68 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI 143 (544)
Q Consensus 68 ~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~ 143 (544)
.|.+|..+ .+|..++...+..++..+...|+++||++......+. ......+++..+|+.++++.+.. .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 45566544 4567777666666777777789999999887665443 22334677889999999887654 5778899
Q ss_pred HHhcCceEEEEccchhhHhh
Q 009090 144 LDHAEIDFVFVQDKKVKELL 163 (544)
Q Consensus 144 l~~~~~~~vi~~~~~~~~~~ 163 (544)
|+..++.++++.......+.
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~ 182 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLL 182 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHH
Confidence 99999999999988766554
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=85.81 E-value=6.4 Score=40.77 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=66.5
Q ss_pred CCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh--HHHHHHHHHhcCCEEeecCCCCChhHHHHH
Q 009090 68 DGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFI 143 (544)
Q Consensus 68 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~ 143 (544)
.|.+|.. ..+|..++...+...+..+...|+++||++.+..+.+.. .....+++..+|+.++|... ......+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 3445543 457889998888888888888899999999998876543 23456788899998876643 2345678
Q ss_pred HHhcCceEEEEccchhh
Q 009090 144 LDHAEIDFVFVQDKKVK 160 (544)
Q Consensus 144 l~~~~~~~vi~~~~~~~ 160 (544)
++..++..+++......
T Consensus 172 i~~~~~t~l~~~ps~ll 188 (445)
T TIGR03335 172 IESYRPTGIVASVFKLL 188 (445)
T ss_pred HHHhCCCEEEECHHHHH
Confidence 89999999887665543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 544 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 4e-21 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-19 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 6e-19 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 6e-17 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-17 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-15 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-15 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-15 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 7e-15 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-15 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-14 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 5e-14 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-13 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 1e-13 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-13 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-13 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-13 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-13 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-12 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-12 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-11 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-10 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-10 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-10 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 3e-10 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-09 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 5e-09 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-08 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-08 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 7e-07 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 2e-06 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 3e-06 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 3e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 9e-06 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-05 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-05 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 4e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 4e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 233 bits (598), Expect = 2e-70
Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)
Query: 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
D + + P TY ++ + L A G
Sbjct: 12 DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64
Query: 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
G RV + N ++ L + VP+ L V+FIL + V
Sbjct: 65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123
Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
+R V I S E L +E +
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
+ IMYTSGT+G PKGVV THE++ + S +D + D L LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222
Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
+ + RG ++ D + ++E + + VP +
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269
Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
N + + R I+GGAP+
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297
Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
+ + VQGY LTE+CG T+ ++ + G+AG ++++++ +
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
GEV ++ L Y+ P+ TR++ +GWF TGDIG+I G +
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407
Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
I DR K++I IS G ENVY
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 1e-67
Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
++ + + P + L T+ E+ V + + L A G P RV
Sbjct: 6 EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+ N V A+ A + L + +N L AE+ +
Sbjct: 59 VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
V +G + + + G+ P
Sbjct: 99 RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154
Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
I YTSGT+G PK ++ + V + Q + +V L +PL H+
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211
Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
V+ G V + + + T L P
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
LA A +L LR V GA + V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288
Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
E + V YG TE + P GT +SE+R+ V G
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341
Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
GE+ V + F GY P T E + DGW+ T D+ P G V+I+ R
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401
Query: 516 KNLIKISQGEYVALEYLENVYC 537
++I IS G EN++
Sbjct: 402 DDMI-ISGG--------ENIHP 414
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 2e-66
Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
Q+ + G + TY+ +Y E + L A RVG
Sbjct: 5 FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
+Y N Q + + AC ++ + L P + + ++ +F L
Sbjct: 53 LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
+ + +T S + + + + +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
M+TSGT+G K V T G L D +LS LP+ HI +
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223
Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
G +V + + + + T ++ VP+ + ++
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
++ L+ ++ GGA LS + E L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
+ + +G+TETC P+ T G S ++++
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348
Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
GE+ ++G + +GY D + +G+F+TGDI +I G V I DR+K+LI
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401
Query: 521 ISQGEYVALEYLENVYC 537
IS G EN+Y
Sbjct: 402 ISGG--------ENIYP 410
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-65
Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)
Query: 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
D++ + +P R T+++ ++ S L G G RV
Sbjct: 10 DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
I NC + +E + A + I +P+ L + F+L V +++++
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119
Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
S ++ G + F L + I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165
Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
++T+ G P+G +++ + S + +T DV L LPL H+ +
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220
Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
+ G + D D+ K T++A + I L++ P
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
A L LR V P + +E F
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291
Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
A +G +ET G +T + +AG + + + +P E+G
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
E+ +RG T+F GY+ N T+ + +GW HTGD+G+ +G + R +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399
Query: 516 KNLIKISQGEYVALEYLENVYC 537
K LI + G ENVY
Sbjct: 400 KELI-KTGG--------ENVYP 412
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y E+ ++ + L A G + G RV + + A + +PL
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
N E+D+ D +++VC S +A + G
Sbjct: 84 ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125
Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
S + + ++ I+YTSGT+G KG +L+H+ +A+
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184
Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
+ + T DDV + LP+ H L F RG+ + D + + D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238
Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
LM + T+L GVP +
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253
Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
LL ++ G +RL ISG APL + E+ T A L + YG+TET T
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310
Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
D + G GP R+ PE G L G + V+G +F GY++ P+
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367
Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
T+ DG+F TGD+G+I G V I+ R K+L+ I+ G NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-62
Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)
Query: 33 GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
GFPS+ + D + +K+ + + + + E+ E
Sbjct: 10 GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63
Query: 88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
++ S + G G VG+ N +V + A ++ VP +N +
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114
Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
E++ + D + +V + L K + +TG++ S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159
Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
E + G + + ++ I YT GT+G PKGV+LTH +A + +
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
++ D + +P+ H + + G V + L +++ + K T
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274
Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
VP P + L +
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296
Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
L++ +G P++ + E L++ Q +G+TE C T P
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
+ T G EL++ + E G + + GE+ +RG +F GY+K +E
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407
Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
+F TGD+G I G + DR K +IK
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 1e-61
Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
P + +A +++Y + F + G +Y E E+ + AL
Sbjct: 15 KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
+ G R+ + NC ++ + A + + P + + L ++ VF
Sbjct: 70 QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129
Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
KV + ++ ++ +V S + D F+
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176
Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
+ + + IM +SG++G PKGV LTHE I T S + + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234
Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
L+ +P H + G V D L + K T + VP
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291
Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
+F L K +L + DL
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
L + SGGAPLS EV E R + QGYGLTET + P+ G +G V
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368
Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
+ ++ + + L P GEVCV+G L GY NP+ T+E I +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
DIG I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 7e-60
Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)
Query: 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
P + TA + ++++Y G F D + TY E +E +++ A+
Sbjct: 12 APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67
Query: 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
+ G R+ + N Q+ + + + P D + ++ ++ VF
Sbjct: 68 KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127
Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
V +K+ + + ++ ++ S T Q S F+ HL
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174
Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
P+ F+ I IM +SG++G PKGV L H T S + F +++
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232
Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
D LS +P H + G V + + L + K VP
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289
Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
+F K L + DL
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
L + SGGAPLS EV E + + QGYGLTET + P+ G G V
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366
Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
+ E ++ V + G L GE+CVRG + SGY NP+ T I DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
DI + I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 2e-59
Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)
Query: 83 YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
Y E+ A A RV ++ + A+ A + VPL G +
Sbjct: 51 YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109
Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
IL + V PD L + + +
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150
Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
+ ++YTSGT+G PKG V+ +AT + +
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192
Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
T +DV + LPL H+ L I R G+ + T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251
Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
++ + +A+ L A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269
Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
RL++SG A L E T + + YG+TET T D GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327
Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
ELRL + LD GE+ VRG LF+ Y PD T + DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382
Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
+F TGD+ P+G V+I+ RK +LI S G +
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 3e-58
Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY E+ E + SALR G P R+ + + A ++ V L P
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
++L H+ V + + ++ SA+ + + + +A
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
++E + + +I +Y+SG++G PKG V TH A +L+
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
+ +DV S L F GA+ +A+ L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
+ GVP LY +L
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291
Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
+ AR +R+ S G L E+ E F C ++ G G TE +
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349
Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
GT G PV Y E+ L VP E+G ++ ++G + Y+ N +
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398
Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
+R + + W +GD LPNG R +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 1e-57
Identities = 85/487 (17%), Positives = 155/487 (31%), Gaps = 115/487 (23%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
+Y+E+ + + +LR G +PG + N + A L + V
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
F +E++ + + L++ + + + E + + +
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
++ + ++ + P + + GT+G PK + TH S
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218
Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
+ T YL +P AH + F G +V D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262
Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
A L + + A VP W+
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291
Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
+ + LA L+L+ GGA LS + C L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336
Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
E T ++ T G P+ E+ + +P E+G +
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386
Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
RG F GYYK+P + +G++ +GD+ I P G + + R+K+ I GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445
Query: 529 LEYLENV 535
E +EN+
Sbjct: 446 AEEIENL 452
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 2e-56
Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)
Query: 34 FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
P + +L ++ + +P ++G G TY +V ++
Sbjct: 13 LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63
Query: 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
S L G + G + ++ + P++V A + I P + +
Sbjct: 64 SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123
Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
+ Q +++ D ++V +C S + E + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168
Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
E + P ++ + Y+SGT+G PKGV+LTH+ + T V+ + +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227
Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
LP+ HI L+ ++ + ++ +L + + K ++ VP
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
P + ++ K SP D K L LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302
Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
SGGAPL E+ + A L QGYG+TE +C G G V
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
+E+++ V PE G + L P GE+C+RG + GY +P+ T +I +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417
Query: 500 IGQILPNGVVKIIDRKKNLIK 520
IG I + + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 3e-54
Identities = 76/522 (14%), Positives = 156/522 (29%), Gaps = 124/522 (23%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
I ++ VQ +P + G +Y E+ + + L G G
Sbjct: 31 PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
+ N ++ A ++ + + E++ F++ + K L
Sbjct: 82 TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131
Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
+ + + + + + + +++ ++
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
+ + G++G PK + TH S + + L LP H
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244
Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
F G V + + + + + + VP
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292
Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
+ W+ + + L
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
+L+ GGA + + V C L Q +G+ E D + T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366
Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
S E+++ EVP E+ G + RG F GYY++P+ + D
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
++++GD+ Q P+G ++++ R K+ I GE +A E +E +
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKL 457
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 1e-52
Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)
Query: 34 FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
P + + + D ++ ++ L ++G G TY +V+ QI +
Sbjct: 52 LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104
Query: 93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
G V + NCP++V + A + P + + +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164
Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
+ K+K L ++ + ++ + + E + + E
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211
Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
E++ + + + Y+SGT+G PKGV+LTH+ + V+ V +D +
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268
Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
DDV L LP+ HI L+ ++ A + ++N L + + K T+ VP
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326
Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
P I A+ K S + K L
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344
Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
+R+V SG APL E+ + A L QGYG+TE + G
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403
Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
G V +E+++ V P+ G L GE+C+RG + GY NP T E+I DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
W HTGDIG I + + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 4e-52
Identities = 103/518 (19%), Positives = 173/518 (33%), Gaps = 120/518 (23%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T D+ KY R + G W +Y+E+ ++ + + G +
Sbjct: 26 TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
RV + N ++ E + A L + V +EI + F + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
+ PD S R + + ++ ++ I +EFL L ++ +++ +
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
++ + + G++G K + TH+ S + VYL+ LP+AH
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235
Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
+ S G L L DD L K T+ A VP
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
+ + WM+ L+ L ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302
Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
GGA S E V C L Q +G+ E D +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354
Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
P+S Y E R+ + + G + RG GYYK + S DG++ T
Sbjct: 355 KPMSPYDESRV--WDDHD-RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411
Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
GDI ++ +G + + R K+ I GE VA E +EN
Sbjct: 412 GDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENH 448
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-46
Identities = 124/500 (24%), Positives = 179/500 (35%), Gaps = 125/500 (25%)
Query: 72 GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
G TY EVY+ +++ LRA G G RV G N + +EA A + +
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
L P + +IL+HAE + D + L+ + ++ V E E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
A+ P E C + YT+GT+G PKGVV +H +
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204
Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
+ S VD ++ DV L +P+ H+ L GA
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248
Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
L+ L+EL T AGVP V
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277
Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP---LSTEVEEF-LRVTC 407
W+ + RL RLV+ G A L E + V
Sbjct: 278 ---WLAL------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR- 321
Query: 408 CAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGY 457
QGYGLTET F +++ + G LR+ + E
Sbjct: 322 -----QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 375
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
P D GEV ++G + GYY N + TR ++ DG+F TGDI G V+I DR K
Sbjct: 376 VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLK 435
Query: 517 NLIKISQGEYVA-LEYLENV 535
+LIK S GE+++ ++ LEN
Sbjct: 436 DLIK-SGGEWISSVD-LENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-29
Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)
Query: 78 TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
++E+ E Q + L + G + G RV + P+W + C LI +P +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
+ + L ++ + D+ ++E+ ++ +C S LR+ + + + +
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182
Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
W F L + I +TSGTSG PK ++ ++
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
+ + D+ + +IL ++E + GA + D +
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291
Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
L + G P V+ R L + L YK
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321
Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
L+ ++ G L E E + T + + YG TET G T
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363
Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
+ G G S Y ++ + + G + L G++ +R K +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419
Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
NPD T +I ++ GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 84/507 (16%), Positives = 144/507 (28%), Gaps = 129/507 (25%)
Query: 52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
+ P + + + G + T+ ++Y L + L G+ G RV I
Sbjct: 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92
Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
++V A I VPL G +L + + V ++
Sbjct: 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146
Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
+ +A + G P S + L L N + + +
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189
Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
YTSG++ P GVV++H+ + + + + + +S+LP H
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242
Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345
V P +L G P V ++ RP R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVLTSPVSFLQ------RPA--RWM 275
Query: 346 DALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGAPLSTE 398
+ + N + +L A R + G + ++SG +
Sbjct: 276 HLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSERVQAA 326
Query: 399 -VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMCMVGTA 438
++ F F + Y L E P TV F E G A
Sbjct: 327 TIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHA 382
Query: 439 GPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
P + L + D GE+ V G + +GY++ PD +
Sbjct: 383 KPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQKPDES 441
Query: 487 RESII------------DGWFHTGDIG 501
+ W TGD G
Sbjct: 442 ERTFGGKIVTPSPGTPEGPWLRTGDSG 468
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
TY+++ + I + L+A GA+PG RV + A ++A C I VP+Y
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101
Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
I+ +++ V + +K+ + + + + + + E E+ +
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+P + +I + YTSG++ PKGV+++H + ++ +
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
M + + S+LP H + G ++ +M
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241
Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
P F + PL + KYK ++ N Y D
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273
Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
R + + G +G P+ E +E F + AF G YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329
Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
E T+ E S + V P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389
Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
P D GE+ V+ ++ GY+ P+ TR + + TGD+G L
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447
Query: 506 NGVVKIIDRKKNLIKI 521
+ + R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
V + N A+D+ + + P + W D ++ T+K++ + +
Sbjct: 51 VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106
Query: 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
G G V + + + M + L I VP L + + ++ A + +
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166
Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
++V E +C + V G W +F +
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209
Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
I + T + ++SGT+G PK V +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
L+ + G PL+ EV FL T L++G+G TET FP G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396
Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
P Y ++E + G + GE+ + LF Y K+P+ T E+ DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIG 501
++HTGD+
Sbjct: 453 YYHTGDMA 460
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 3e-14
Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)
Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
D+ D +K D + + + F+ T M Q P + ++
Sbjct: 6 DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65
Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
+ + P + + + GT+G PK VV I +S
Sbjct: 66 RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125
Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
L+ +P HI+ + +E R G D R L
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
A V + + + ++ L R + +P L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219
Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
L +V ++ L + GG L+ + +F+ + YG T G +
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279
Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
S + + V ++ G V V + + +
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336
Query: 486 TRESIIDGWFHTG 498
R + G+
Sbjct: 337 IRLPGVSGFAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 65/406 (16%), Positives = 114/406 (28%), Gaps = 106/406 (26%)
Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
M +TG Y + + L V E + F+ + D PK ++ E
Sbjct: 7 MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54
Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
VSG K ++ F+ ++ + E R S+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109
Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
Y + L +D V R+ + + +++AL ELRP
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164
Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
+K+ W+N+ + L L + R S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223
Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
L ++ LR LV L F + C ++ T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278
Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
+ + + L+ +P E K+L Y + DL RE +
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKISQGEYVALEYLE 533
I + + +G+ D+ +I+ S L LE
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 60/387 (15%), Positives = 117/387 (30%), Gaps = 107/387 (27%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---------FGPY-VWKTYKEVYEEV 86
V+ L + ++ + R +++ + F Y V + +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPY 137
Query: 87 LQIVSALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVP----LYDTLG----P 137
L++ AL P V I G + A++ C + + C + L P
Sbjct: 138 LKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
+L+ + ++ D R+ S+ AE + + KP
Sbjct: 196 ET---VLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIH------SIQAELRRLLKS---KP 242
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-CTIMYTSGTSGDPKGVVLTHETIATFVSG---VD 253
Y + L L V + FN+ C I+ T+ + F+S
Sbjct: 243 YE-NCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQ-----------VTDFLSAATTTH 288
Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
+ LD +T D+V S L LD ++ L +++ P
Sbjct: 289 ISLDHHSMTLTPDEV-KSLL--LKYLDCRPQD------------------LPREVLTTNP 327
Query: 314 TLLAGVPRVF---------------EKIHEGIKKALEELRP--LRRR-----IF--DALY 349
L+ + +K+ I+ +L L P R+ +F A
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 350 KYK---LAWMNMGYKQREASPLADLLA 373
L W ++ + + + + L
Sbjct: 388 PTILLSLIWFDV--IKSDVMVVVNKLH 412
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-11
Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I++TSGT+G PKGV ++H+ + +F + ++ + L+ P + D
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
SV M PTL G +P+ E +
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226
Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
++ +F + + + S + L G L+
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
+ A ++ YG TE TV +S E+ E V
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322
Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
P +D+ GE+ V G + GY NP+ T E+
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382
Query: 496 HTGDIGQILPNGV----------VKI 511
HTGDIG + + + +K
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
+Y+E+ EE +I L+ GA G V +Y + V + + +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544
Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
D P ++++L + + +++KE + + L +
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587
Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
+ + P + IMYTSGT+G PKG + TH I V
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
VD + D +LS A D +++ A + + D L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689
Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
D +++ ++ +F + + + ++ LR
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724
Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
++ GG S V + LR+ L+ YG TE
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757
Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
TV + + + ++P+ S L++ P
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801
Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
GE+C+ G + GY DLT+E I+ F TGD+ + LP+G ++ R
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861
Query: 517 NLIKI 521
+ +KI
Sbjct: 862 DQVKI 866
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
++YTSG++G PKGV ++ +++F + K + +L A D
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237
Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
I E F +R G G L+ L EL T VP + ++ E+
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
L + GG ++
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
++ + LV YG TE T+ S L + +G
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350
Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
P L GE+ + G + +GY PD I+G + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410
Query: 500 IGQILPNGV----------VKI 511
I ++ + VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I+YTSG++G+PKGV ++ + +F + F ++ ++L+ P + D
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
SV M+L P L +G + + K + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
F+ L K L S + L L + G L + L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
A + YG TE TV V+ E+ + + P
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323
Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
+D+ P GE+ + G ++ GY P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I ++SGT+G PK + TH I L L Q +L PL+ D
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220
Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
E + G D LR + E +F + + + L
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277
Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
LR+ + D L + R+ R
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
LV GYG TE T + + P+ +V
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351
Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
+ + E + GE+ G L GY + TR S ++ + TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402
Query: 500 IGQILPNGV----------VKI 511
+ G VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
I+YTSG++G+PKGV +T+ + +F + F + V+L+ P + D
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197
Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
SV M++ P+L+ G + I + + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227
Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
F +L + + S L + ++ + G L E + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282
Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
A ++ YG TE TV V+ + E + + P
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324
Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
+ + P GE+ + G ++ GY +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 8e-07
Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
++YTSGT+G+PKG +L H+ I+ F + +T D F ++ D +
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239
Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
E F GAS+ D + + + T++ P + E +
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
++ +I+ G+ S
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308
Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
V ++ + YG TE TT+C + + +
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345
Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
P +D+ GE+C+ G+ L GY+K P+LT + +D F
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 497 -----TGDIGQILPNGV----------VKI 511
TGD + L +G VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
+Y+E++ +V + + L G + G V IY P+ AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.78 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.71 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.57 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.71 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.56 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 89.58 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 85.92 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 80.07 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-67 Score=554.48 Aligned_cols=443 Identities=21% Similarity=0.256 Sum_probs=362.0
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCC--CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 009090 31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (544)
Q Consensus 31 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~ 108 (544)
..++|..+.+..++.++|+++++++|+++|+++. +. ..+..+++||+||.++++++|++|++.|+++||+|++++
T Consensus 8 ~~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 84 (549)
T 3g7s_A 8 KIGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84 (549)
T ss_dssp CCCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 3456666677889999999999999999999987 42 234457899999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHH
Q 009090 109 ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188 (544)
Q Consensus 109 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (544)
+|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++......+....... ....++..+..
T Consensus 85 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------ 156 (549)
T 3g7s_A 85 PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------ 156 (549)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------
T ss_pred CCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------
Confidence 9999999999999999999999999999999999999999999999988766654433221 23444444321
Q ss_pred HHhhCCceeeeHHHHHhcccccccccCCCC-CCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCc
Q 009090 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (544)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 267 (544)
..++.++....... ....... ++++++|+|||||||.||||.++|+++.+.+..+...+ ++.++|
T Consensus 157 --------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d 222 (549)
T 3g7s_A 157 --------VNSLSEVMDSGSED-FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMD 222 (549)
T ss_dssp --------SSCHHHHHHHSCSC-CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTC
T ss_pred --------CcCHHHHHhcCccc-cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCC
Confidence 23455555443222 1222333 48999999999999999999999999999998887776 788999
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+++..+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.......
T Consensus 223 ~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------- 291 (549)
T 3g7s_A 223 TIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK----------- 291 (549)
T ss_dssp EEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------
Confidence 99999999999998887778999999999876 999999999999999999999999998764332100
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHh----cC---CceEEeecccc
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTE 419 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~i~~~YG~tE 419 (544)
.. ..+++|.+++||+++++++.+++.+. ++ +.+++.||+||
T Consensus 292 ------------------------~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE 339 (549)
T 3g7s_A 292 ------------------------TY--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339 (549)
T ss_dssp ------------------------CC--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGG
T ss_pred ------------------------cC--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccc
Confidence 00 12489999999999999999999988 66 88999999999
Q ss_pred ccCceeeccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc---cCC--c
Q 009090 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--W 494 (544)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~---~~g--~ 494 (544)
++.+++...........++|+|+++++++|++ +++ ..+++.|+.|||+|+|+.++.||+++++.+.+.| .+| |
T Consensus 340 ~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~ 417 (549)
T 3g7s_A 340 ACPMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LED-GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKF 417 (549)
T ss_dssp GSSEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSS-CCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEE
T ss_pred cchhhhcCCccccCcCCCccccCCCCEEEEEe-CCC-CcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCce
Confidence 99988877665545568999999999999998 333 3466788999999999999999999999999998 678 9
Q ss_pred cccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 495 ~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|||+|++|+||++++.||.||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 418 ~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (549)
T 3g7s_A 418 FRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMD 466 (549)
T ss_dssp EEEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEE
T ss_pred EccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 999999999999999999999999997 8999999999999999999864
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=549.15 Aligned_cols=451 Identities=26% Similarity=0.343 Sum_probs=369.6
Q ss_pred CCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCC
Q 009090 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (544)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl 98 (544)
|.+..+|++......+| ...++.++|.++++++|+++|+++. ++ + +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 34556777766443333 3478999999999999999999864 22 2 689999999999999999999999
Q ss_pred CCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEE
Q 009090 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (544)
Q Consensus 99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (544)
++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... .. .++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence 99999999999999999999999999999999999999999999999999999999988766554433211 22 3344
Q ss_pred ecCCchHHHHHHhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhc
Q 009090 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258 (544)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~ 258 (544)
++.... ....+.++...... ..+.....++++++++|||||||.||||++||+++.+.+....... .
T Consensus 149 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~ 215 (536)
T 3ni2_A 149 VDSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-N 215 (536)
T ss_dssp SSCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-S
T ss_pred ecCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-c
Confidence 433211 24456666543322 2233456789999999999999999999999999988876543321 1
Q ss_pred ccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHh
Q 009090 259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (544)
Q Consensus 259 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 336 (544)
....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----- 290 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD----- 290 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC-----
T ss_pred ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc-----
Confidence 1125778999999999999999865 6678999999999876 99999999999999999999999988754211
Q ss_pred hchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEee
Q 009090 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY 415 (544)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~Y 415 (544)
....+ +++||.+++||+++++++.+++++.+ ++.+++.|
T Consensus 291 --------------------------------~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 291 --------------------------------LDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp --------------------------------GGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred --------------------------------cccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 11112 24899999999999999999999999 89999999
Q ss_pred ccccccCceeecc----CCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-
Q 009090 416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (544)
Q Consensus 416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~- 490 (544)
|+||++.+++.+. .......+++|+|+++++++|+| +++ ..+++.|+.|||+|+|+.++.||+++|+.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PET-GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCC-CcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999998766542 11233457899999999999998 433 3566788999999999999999999999999999
Q ss_pred cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 491 ~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.+|||+|||+|++|+||++++.||.||+||+ +|++|+|.+||++|.+||+|+|
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 461 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISD 461 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEE
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 7899999999999999999999999999998 7999999999999999999974
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-66 Score=545.97 Aligned_cols=432 Identities=25% Similarity=0.329 Sum_probs=350.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3468999999999999999999864 22 234789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++|+.++++++|++.+....+.... ........++.++.... .....
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~ 159 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLA 159 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEE
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------ccccc
Confidence 99999999999999999999999999999999999987765543322 12233444555443211 01335
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhh--hhhhhcccCCCCCCcEEEEecChHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
++++...... .....++++++++|||||||.||||++||+++....... ...+ .++++|++++.+|++|
T Consensus 160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH 230 (541)
T ss_dssp HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence 5555432211 134467899999999999999999999999998766542 2222 6789999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 289 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG--------------------- 289 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC---------------------
Confidence 9998777788999999999864 89999999999999999999999999876433211
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC----
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
..+++||.+++||+++++++.++| +.+|+++++.||+||++.+++......
T Consensus 290 ------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 344 (541)
T 1v25_A 290 ------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344 (541)
T ss_dssp ------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred ------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence 112489999999999999999999 667999999999999998877654331
Q ss_pred ------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-CCccccCceEEEc
Q 009090 432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504 (544)
Q Consensus 432 ------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~ 504 (544)
....+++|+|+|+++++|+| +++...+.+.++.|||+|+||.++.||+++|+.+.+.|. +|||+|||+|++|
T Consensus 345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d 423 (541)
T 1v25_A 345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423 (541)
T ss_dssp SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence 12347899999999999999 665544443447899999999999999999999999994 9999999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||++++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 424 ~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 462 (541)
T 1v25_A 424 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKE 462 (541)
T ss_dssp TTCCEEEEEESSCEEEE-TTEEEEHHHHHCC---------
T ss_pred CCceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceE
Confidence 99999999999999997 8999999999999999999975
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-66 Score=547.78 Aligned_cols=445 Identities=26% Similarity=0.310 Sum_probs=333.4
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhH
Q 009090 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (544)
Q Consensus 35 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~ 114 (544)
+..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4555667899999999999999999986320 22222 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCC
Q 009090 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (544)
Q Consensus 115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (544)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..... .......++..+.... .
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~ 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence 99999999999999999999999999999999999999999987766544332 2234455555543211 1
Q ss_pred ceeeeHHHHHhccccc-----cc-ccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcE
Q 009090 195 IKPYSWDEFLHLGKVN-----EM-EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 195 ~~~~~~~~l~~~~~~~-----~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (544)
....++.++....... .. +.....++++++++|||||||.||+|.++|+++...+......+ ....+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 1234455555432211 11 11122457899999999999999999999999988876654431 1125778999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 269 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
+++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999888888999999999876 9999999999999999999999999876421
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCc-eEEeeccccccCceee
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV 426 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~YG~tE~~~~~~~ 426 (544)
.....++ ++||.+++||+++++++.++|++.++.. +++.||+||+++.++.
T Consensus 300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 1111122 4899999999999999999999999875 9999999999988877
Q ss_pred ccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEcc
Q 009090 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (544)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (544)
...... ..+++|+|+|+++++|++ +++ ..+++.|+.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEe-CCC-CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 665443 448999999999999999 333 3566788999999999999999999999999999 799999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466 (550)
T ss_dssp TCCEEEC--------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999997 8999999999999999999975
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-66 Score=546.21 Aligned_cols=429 Identities=15% Similarity=0.181 Sum_probs=332.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..|+.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111111112233344444443211
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
...+.++...............++++++++|||||||.||||+++|+++...+......+ ++.++|++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222222445789999999999999999999999999999998887776 789999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 304 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------ 304 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence 9999874 6678999999999876 999999999999999999999999988764332111
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
++ ++||.+++||+++++++.+++++.+++.+++.||+||++..++........
T Consensus 305 -------------------~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 305 -------------------QI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -------------------HH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------cC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 11 389999999999999999999999999999999999988555443333333
Q ss_pred ccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
...++|+|+ ++++++|+| +++ .+++.|+.|||+|+||.++.||+++|+.+.+.| .+|||+|||+|++|+||++++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCC--CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999998 444 456778999999999999999999999999999 799999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 466 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMH 466 (544)
T ss_dssp EEEEC----------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccE
Confidence 9999999996 8999999999999999999975
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-65 Score=543.55 Aligned_cols=437 Identities=17% Similarity=0.169 Sum_probs=361.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
.|..++.+.++|+++|+++|+++|+++. + .++..+++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~-~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~ 126 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWC---D-DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEE---E-SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEE---c-CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 4466788889999999999999999986 3 34556899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchh--hHhhcccccccccc-cEEEEecCCchHHHHHHhhC
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 193 (544)
++|||+++|++++|+++.++.+++.++|+.++++++|++.+.. ..+..... ..... ..++.++...
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSC----------
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999999999987654 33322221 11222 3344443221
Q ss_pred CceeeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEE
Q 009090 194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 270 (544)
.....++.+............ ....++++++++|||||||.||+|.++|.+++..+......+ .+..+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 270 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY 270 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence 112445666554332211111 245789999999999999999999999999888776644443 678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+..|+.|..+.+. .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------- 334 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---------------- 334 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence 9999999888775 5667899999988742 8999999999999999999999998875420
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceee
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~ 426 (544)
... ..+++||.+++||+++++++.++|++.+|+++++.||+||++..++.
T Consensus 335 ----------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 335 ----------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred ----------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 011 12248999999999999999999999999999999999999877665
Q ss_pred ccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec-----CCccccccCChhhhhhcccCCccccCceE
Q 009090 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (544)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~-----~~v~~gy~~~~~~~~~~~~~g~~~TGDlg 501 (544)
.+.. ....+++|+|+|+++++|+| +++ .+++.|+.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|
T Consensus 385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g--~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg 460 (580)
T 3etc_A 385 FPWM-EPKPGSIGKPTPGYKIELMD-RDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460 (580)
T ss_dssp CTTS-CCCTTCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred CCCC-CCCCCccccCCCCCEEEEEC-CCC--CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence 5433 34458999999999999999 554 456778999999997 78999999999999999999999999999
Q ss_pred EEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 502 ~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|.|
T Consensus 461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~ 502 (580)
T 3etc_A 461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLE 502 (580)
T ss_dssp EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeee
Confidence 99999999999999999998 6999999999999999999964
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=539.34 Aligned_cols=426 Identities=23% Similarity=0.325 Sum_probs=354.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+...|+.++|+++++++|+++|+++. +. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 46789999999999999999999865 22 258999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987765543322111 11111111110 01
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.+.+..... ....+.....++++++++|||||||.||||++||+++.+.+......+ ++.++|+++..+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333222 112233455789999999999999999999999999999998877766 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
+++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 999876666669999999876 9999999999999999999999999886532211
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-ccccC
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~ 436 (544)
...++++|.+++||+++++++.++|.+. ++.+++.||+||+++.++...... ....+
T Consensus 280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 1123489999999999999999999987 999999999999998776654433 44558
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecc
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~ 516 (544)
++|+|.+++++++++ +++. +++.| .|||+|+|+.++.||+++|+.+.+.|.+|||+|||+|++|+||++++.||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 899999999999998 4443 34445 7999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceechHhHHHHhhcCCCccC
Q 009090 517 NLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 517 d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|+|++ +|++|+|.|||++|.+||+|+|
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 440 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSE 440 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeE
Confidence 99997 8999999999999999999974
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=542.00 Aligned_cols=425 Identities=20% Similarity=0.196 Sum_probs=349.6
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|++|.++.+++.++++.++++++|++++... ..........+..+.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111122333343333211
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
.+.++.... ..........++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345678999999999999999999999999999988877666 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 89999999999999999999999998875432110
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
..+++||.+++||+++++++.++|++.+|+.+++.||+||++..+.........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112489999999999999999999999999999999999965333221111122
Q ss_pred ccCccCcCccC-ceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEE
Q 009090 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 434 ~~~~~G~~~~~-~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~ 511 (544)
..+++|+|+++ .+++|+| +++ .+++.|+.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 4899998 443 456778999999999999999999999999999 699999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 457 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHD 457 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEE
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999996 8999999999999999999964
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-64 Score=530.79 Aligned_cols=418 Identities=21% Similarity=0.264 Sum_probs=342.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
++|+.++|+++++++|+++|+++. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999853 211 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEE--ccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|+++|++++|++|.++.+++.++++.++++++|+ +......+.... ...+ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665544331111 1111 22
Q ss_pred eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCC--CCCcEEEEe
Q 009090 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (544)
Q Consensus 199 ~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (544)
.++++..... ..........++++++++|||||||.||||.+||+++.+.+..+...+ ++ .++|++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111111345678999999999999999999999999998887766555 55 789999999
Q ss_pred cChHHHHHHH-HHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 009090 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (544)
Q Consensus 273 ~p~~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (544)
+|++|.+++. ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 9999999985 47778999999999876 8999999999999999999999999886532100
Q ss_pred HHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCC
Q 009090 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
... ..+++||.+++||+++++++.++|++.++..+++.||+||++ .+....
T Consensus 266 ------------------~~~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSS--------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ------------------TCC--------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ------------------ccc--------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 000 012489999999999999999999999999999999999993 333222
Q ss_pred CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEe-cCCccccccCChhhhhhcccCCccccCceEEEccCCcE
Q 009090 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~-~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l 509 (544)
....+++|.|.+++++++++.+.....+++.|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|++|+||++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 2234789999999999999933333366778899999999 99999999999999999999999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999999997 8999999999999999999974
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-64 Score=530.43 Aligned_cols=434 Identities=26% Similarity=0.313 Sum_probs=353.3
Q ss_pred cccHHH-HHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 41 ~~tl~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..++.+ +|..+++++ +++|+++. ++ + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 888889999 99999853 21 1 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeCCccc---------cccccc
Confidence 999999999999999999999999999999999999887655433221 1121234444433210 001234
Q ss_pred HHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEec
Q 009090 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (544)
|+++.........+.... .++++++++|||||||.||+|.+||+++...+......+. ...+.++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 666654321110111111 2389999999999999999999999999988877654410 12678899999999
Q ss_pred ChHHHHHHHHH-HHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 274 PLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 274 p~~~~~g~~~~-~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
|++|.+++... +.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+...
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 302 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-------------------- 302 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--------------------
Confidence 99999998764 4456 9999999876 99999999999999999999999988764210
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~ 430 (544)
....+ +++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++.....
T Consensus 303 -----------------~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 303 -----------------LNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp -----------------GGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred -----------------ccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 11111 24899999999999999999999999 68899999999999877765433
Q ss_pred CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcE
Q 009090 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (544)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l 509 (544)
....+++|+|.|+++++|+| ++ ...+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVID-LD-TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TT-TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEe-CC-cCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 33458999999999999998 32 23556778999999999999999999999999999 7999999999999999999
Q ss_pred EEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 510 ~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 468 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFD 468 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEE
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 999999999997 8999999999999999999964
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-63 Score=530.19 Aligned_cols=433 Identities=19% Similarity=0.229 Sum_probs=358.5
Q ss_pred CCCcccHHHHHHHHHHc-----CCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCc
Q 009090 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (544)
Q Consensus 38 ~~~~~tl~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~ 111 (544)
|...+++.++|++++++ +|+++|+++. +. ++..+++||+||.++++++|++|++. |+++||+|+++++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 44567889999999999 9999999876 32 33347899999999999999999998 999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHh
Q 009090 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 112 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
+++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+..... ..+..+.++.+++...
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc-------
Confidence 99999999999999999999999999999999999999999999887665533221 2233444555443110
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH--HHhhhhhhhhcccCCCCCCcEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~ 269 (544)
.....++++...... ........++++++|+|||||||.||||.++|+ ++. ..... ..+ ++.++|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 013356666543321 122234567899999999999999999999999 444 33332 333 67899999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEec---CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHH
Q 009090 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (544)
Q Consensus 270 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (544)
++..|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 99999999999874 677899999999986 28999999999999999999999998875420
Q ss_pred HHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCcee
Q 009090 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (544)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~ 425 (544)
... ..+++||.+++||+++++++.++|++.+|+.+++.||+||++..++
T Consensus 316 -----------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 316 -----------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp -----------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -----------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 000 1124899999999999999999999988999999999999997665
Q ss_pred eccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEe-----cCCccccccCChhhhhhcccCCccccCce
Q 009090 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (544)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~-----~~~v~~gy~~~~~~~~~~~~~g~~~TGDl 500 (544)
..... ....+++|+|.++++++|+| +++ .+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+
T Consensus 365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 365 VSKTM-KIKPGYMGTAASCYDVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp CCTTS-CCCTTCCCEECTTCCEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cCccc-ccCCCcccccCCCceEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 54332 33458999999999999999 544 45677899999999 99999999999999999999999999999
Q ss_pred EEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 501 g~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~ 483 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVE 483 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEE
T ss_pred EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 999999999999999999997 8999999999999999999964
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-64 Score=528.69 Aligned_cols=421 Identities=24% Similarity=0.308 Sum_probs=325.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 73 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45789999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++.+....+.... ........++..++.. .
T Consensus 74 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 138 (509)
T 3ivr_A 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------G 138 (509)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------S
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------c
Confidence 999999999999999999999999999999999999988766533332 2233445555544321 1
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.+.++...............++++++++|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 213 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHV 213 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcch
Confidence 1222222111222333456789999999999999999999999999999998877766 78999999999999999
Q ss_pred HHHHHHHHHHHc-CcEEEEecCChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 009090 279 LDRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (544)
Q Consensus 279 ~g~~~~~~~l~~-G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (544)
+++...+.++.. |+++++...++..+++.++++++|+++++|.++..+++...
T Consensus 214 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------------- 267 (509)
T 3ivr_A 214 TGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------
T ss_pred hHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------
Confidence 999877665544 54444444499999999999999999999999998865320
Q ss_pred cccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCCccccC
Q 009090 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVG 436 (544)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 436 (544)
..+ .+++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++++++........ .
T Consensus 268 -------------~~~--------l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~ 321 (509)
T 3ivr_A 268 -------------PAQ--------LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--K 321 (509)
T ss_dssp -------------GGG--------GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--T
T ss_pred -------------ccc--------hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--C
Confidence 011 1389999999987 8888888888 89999999999999887766543322 4
Q ss_pred ccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeec-
Q 009090 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK- 515 (544)
Q Consensus 437 ~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~- 515 (544)
++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus 322 ~~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 398 (509)
T 3ivr_A 322 SAGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAP 398 (509)
T ss_dssp SCCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-
T ss_pred cccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCC
Confidence 599999999999999 543 5667789999999999999999999999999999999999999999999999999999
Q ss_pred -cceeecCCCceechHhHHHHhhcCCCccC
Q 009090 516 -KNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 516 -~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+|++ +|++|+|.+||++|.+||+|++
T Consensus 399 ~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~ 427 (509)
T 3ivr_A 399 EKELIKT-GGENVYPAEVEGALKQHPAIAD 427 (509)
T ss_dssp ------------------------------
T ss_pred cceeEEE-CCEEECHHHHHHHHHhCCCcee
Confidence 999997 8999999999999999999975
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=529.92 Aligned_cols=420 Identities=23% Similarity=0.326 Sum_probs=345.5
Q ss_pred HHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcC
Q 009090 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (544)
Q Consensus 46 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G 125 (544)
++|+++++++|++.++... +.. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4788999999999999864 211 1 589999999999999999999999999999999999999999999999999
Q ss_pred CEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHh
Q 009090 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (544)
Q Consensus 126 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (544)
++++|+++.++.+++.++++.++++++|++.+....+....... . ..+..+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV--G-ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH--T-CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc--C-ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987655433222111 1 12222222110 01111111
Q ss_pred cccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-H
Q 009090 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (544)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~ 284 (544)
.. ..........++++++++|||||||.||+|.++|+++.+.+......+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233455789999999999999999999999999999988877766 7899999999999999998764 6
Q ss_pred HHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcC
Q 009090 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (544)
Q Consensus 285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (544)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678889999998876 9999999998 89999999999988764211
Q ss_pred CcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCcc
Q 009090 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (544)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (544)
... ...+++|.+++||+++++++.+.|.+.++..+++.||+||++..++.. .......+++|+|++
T Consensus 262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP-YDGDRVPGAVGPALP 327 (503)
T ss_dssp -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC-SSSCCCTTEEEEBCT
T ss_pred -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC-CCCCCcCCccccCCC
Confidence 011 112489999999999999999999999999999999999998775433 333444588999999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecC
Q 009090 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (544)
Q Consensus 444 ~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~ 522 (544)
+++++|+| +++ ..+++.|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus 328 ~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PET-GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCC-CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999998 333 3567788999999999999999999999999999 5999999999999999999999999999998
Q ss_pred CCceechHhHHHHhhcCCCccC
Q 009090 523 QGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 523 ~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|++|+|.|||++|.+||+|.|
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~ 426 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVE 426 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEE
T ss_pred CCEEECHHHHHHHHHhCCCeeE
Confidence 7999999999999999999964
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-64 Score=535.56 Aligned_cols=409 Identities=20% Similarity=0.215 Sum_probs=315.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
....++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.++++++|++.+....+. ....+. ..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~-~~~~~~-------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLY-VEDEAA-------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEE-CCC-----------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCccee-eecccc--------------
Confidence 999999999999999999999999999999999999976544321 111111 111100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
. ............++++++++|||||||.||||+++|+++.+.+... ..+ .+.++|+++...|++|.
T Consensus 200 ------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~ 266 (570)
T 4gr5_A 200 ------S-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWD 266 (570)
T ss_dssp -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSS
T ss_pred ------c-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHH
Confidence 0 0011112234578999999999999999999999999998776542 222 67899999999999987
Q ss_pred HHHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
.+...++.+++.|+++++.+. ++..+++.++++++|++.++|+++..|.+....
T Consensus 267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------- 323 (570)
T 4gr5_A 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------- 323 (570)
T ss_dssp THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence 776677788999999999863 889999999999999999999999988643110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC---
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--- 431 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~--- 431 (544)
..++||.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 378 (570)
T 4gr5_A 324 -------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL 378 (570)
T ss_dssp -------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred -------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence 113899999999999999999988887 789999999999998776554322
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cC--------CccccCceEE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ 502 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~--------g~~~TGDlg~ 502 (544)
.....++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.| .+ |||+|||+|+
T Consensus 379 ~~~~~~iG~p~~~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 379 SGTALPIGVPLAGKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TSSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred CCCccccceeeCCCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 22335799999999999999 543 556778999999999999999999999999988 33 6999999999
Q ss_pred EccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 503 ~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|++
T Consensus 456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~ 496 (570)
T 4gr5_A 456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQ 496 (570)
T ss_dssp ECTTSCEEEEEC------------------------------
T ss_pred ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcce
Confidence 9999999999999999997 8999999999999999999975
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-64 Score=527.93 Aligned_cols=433 Identities=21% Similarity=0.243 Sum_probs=344.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
+|..++++.++|+++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 44667889999999999 9999999753 2 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccc-cEEEEecCCchHHHHHHhhCCc
Q 009090 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
++|||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..... ..++..+..... ..
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cc
Confidence 999999999999999999999999999999999999999877654433221 11112 333333322100 00
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhH-HHHHhhhhhhhhcccCCCCCCcEEEEecC
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (544)
....++++..... .........++++++++|||||||.||+|.+||+++ ..........+ ++.++|++++..|
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 1224566554221 122233457899999999999999999999999999 56555544333 6789999999999
Q ss_pred hHHHHHHHH-HHHHHHcCcEEEEec-C-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 275 ~~~~~g~~~-~~~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++....
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------- 294 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL------------------- 294 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-------------------
Confidence 999999875 556899999999873 3 899999999999999999999999887532100
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~ 431 (544)
.... ..++|.+++||+++++++.++|++.+|+++++.||+||++.+++......
T Consensus 295 --------------~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 348 (529)
T 2v7b_A 295 --------------PARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA 348 (529)
T ss_dssp --------------CCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred --------------cccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence 0000 02799999999999999999999999999999999999987766654443
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEE
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~ 511 (544)
...+++|+|+++++++|+| +++ .+++.|+.|||+|+|+.++.||+++++.+.+.|.++||+|||+|++++||++++
T Consensus 349 -~~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~ 424 (529)
T 2v7b_A 349 -VEYGTTGRPVPGYEIELRD-EAG--HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY 424 (529)
T ss_dssp -CCTTSCCEECTTCEEEEEC-TTS--CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred -CccCCcccCCCCCEEEEEC-CCC--CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence 3447899999999999999 544 456678999999999999999999999999999999999999999999999999
Q ss_pred EeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 512 ~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
.||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~ 456 (529)
T 2v7b_A 425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLE 456 (529)
T ss_dssp EEEGGGCBC-----CBCHHHHHHHHTTSTTEEE
T ss_pred eCccCCeEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999997 8999999999999999999864
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-63 Score=532.21 Aligned_cols=407 Identities=19% Similarity=0.163 Sum_probs=341.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR----F-----GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC----C-----CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4679999999999999999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|++|.++.+++.++++.+++++++++........ ..... ..
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~~-------------------- 146 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-PV-------------------- 146 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-EG--------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-ee--------------------
Confidence 99999999999999999999999999999999997654432110 01000 00
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
..+. ............++++++++|||||||.||||+++|+++.+.+.. ...+ .+.++|+++...|++|..
T Consensus 147 -~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 147 -RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp -GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred -ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 0000 001111222346899999999999999999999999999887765 2333 688999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC---ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
++...+.++..|+++++.+. ++..+.+.++++++|+++++|+++..+.+...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 98888889999999999752 89999999999999999999999988764210
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC---c
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---~ 432 (544)
...++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 273 -----------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 273 -----------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp -----------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred -----------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 0113899999999999999888877766 889999999999998776543322 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccC--------CccccCceEEEc
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~~ 504 (544)
....++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++|+.+.+.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 3346899999999999999 4433 44667899999999999999999999999999943 799999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||+|+++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~ 446 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILD 446 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEE
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccE
Confidence 99999999999999998 7999999999999999999974
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-63 Score=536.42 Aligned_cols=445 Identities=17% Similarity=0.218 Sum_probs=359.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
..+++.++|+++++++|+++|+++. +..++..+++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578899999999999999999976 3334456899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh---------Hhhcccccc-cccccEEEEecCCchHHHHH
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (544)
||+++|++++|+++.++.+++.++|+++++++||+++.... .+....... ......++.++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876432 111111100 01234555554321000
Q ss_pred HhhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHh-hhhhhhhcccCCCCCCcE
Q 009090 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (544)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~ 268 (544)
.........|+++..... .........++++++|+|||||||.||||+++|++++..+. .....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 000012356777765432 11223345678999999999999999999999999876653 333334 6889999
Q ss_pred EEEecChHHHHHHH-HHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHH
Q 009090 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (544)
Q Consensus 269 ~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (544)
+++..|++|.+++. .++.+++.|+++++.++ ++..+++.++++++|+++++|+++..|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 99999999999985 47788999999999864 789999999999999999999999887642110
Q ss_pred HHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeecccc
Q 009090 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (544)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE 419 (544)
..... ++++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 371 -------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 00111 2348999999999999999999999887 89999999999
Q ss_pred ccCceeeccCC-CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---cCC
Q 009090 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (544)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~g 493 (544)
+++.++...+. .....+++|+|++|++++|+| +++ .+++.|+.|||+|+| |+++.||+++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99877665443 234558999999999999999 544 355667899999999 799999999999887776 389
Q ss_pred ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 494 ~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|+|
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~e 544 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAE 544 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEE
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999999999999999998 7999999999999999999974
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-63 Score=529.98 Aligned_cols=428 Identities=19% Similarity=0.210 Sum_probs=354.8
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999988 999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhh----HhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
||+++|++++|+++.++.+++.++++.+++++++++..... ...............+....+...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876531 111111112233344444333221
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
..+.+..... ..........++++++++|||||||.||||+++|+++.+.+......+ ++.++|+++++.|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 112233445778999999999999999999999999999998887777 78999999999999
Q ss_pred HHHHHHHH--HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 009090 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (544)
Q Consensus 276 ~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (544)
+|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.......
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 297 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES----------------- 297 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----------------
Confidence 99999874 7778999999999876 899999999999999999999999988764332100
Q ss_pred HHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCc
Q 009090 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (544)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~ 432 (544)
....++||.+++||+++++++.++|.+.+++.+++.||+||++..++.......
T Consensus 298 --------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 298 --------------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp --------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred --------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 001248999999999999999999999999999999999999865554333323
Q ss_pred cccCccCcCc-cCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEE
Q 009090 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (544)
Q Consensus 433 ~~~~~~G~~~-~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~ 510 (544)
....++|.|+ ++.+++|+| +++ .+++.|+.|||+|+|+.++.||+++|+.+.+.| .++||+|||+|++++||.++
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3335789887 788999998 444 566788999999999999999999999999999 78999999999999999999
Q ss_pred EEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 511 ~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~ 461 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIY 461 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEE
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeE
Confidence 99999999997 7999999999999999999864
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-63 Score=533.17 Aligned_cols=447 Identities=18% Similarity=0.236 Sum_probs=358.4
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCchhHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
..+++.++|+++++++|+++|+++. +..++..+++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3578999999999999999999986 333445689999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhH--------hhcccccccccccEEEEecCCchHHHHHH
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (544)
|||+++|++++|+++.++.+++.++|+++++++||+++..... .........+....++.++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 9999999999999999999999999999999999998765321 1111111122344555554321000 0
Q ss_pred hhCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhh-hhhhhhcccCCCCCCcEE
Q 009090 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (544)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (544)
........+|+++..... .........++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765332 122334456789999999999999999999999998766543 33333 68899999
Q ss_pred EEecChHHHHHHH-HHHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHH
Q 009090 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (544)
Q Consensus 270 l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (544)
++..|+.|++++. .++.++..|+++++.++ ++..+++.++++++|+++++|+++..|.+...
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------ 375 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------ 375 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence 9999999999985 46788999999999864 78899999999999999999999988753110
Q ss_pred HHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeeccccc
Q 009090 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (544)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE~ 420 (544)
...... ++++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 376 -----------------------~~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 376 -----------------------SYIENH--------SLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp -----------------------TSSSSC--------CCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred -----------------------cccccC--------CcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 000111 2248999999999999999999999987 899999999999
Q ss_pred cCceeeccC--CCccccCccCcCccCceEEEeecCCCCCCCCCC-CCCCeEEEec--CCccccccCChhhhhhcc---cC
Q 009090 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (544)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~-g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~ 492 (544)
++.++...+ ......+++|+|++|++++|+| ++++ .+++. |+.|||+++| |+++.||+++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g-~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTG-EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSST-TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCC-CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 987766544 2234558999999999999999 4222 33444 7889999999 589999999999888876 37
Q ss_pred CccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 493 g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||+|.|
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~e 553 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAE 553 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEE
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcce
Confidence 99999999999999999999999999998 7999999999999999999864
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-63 Score=522.74 Aligned_cols=408 Identities=20% Similarity=0.260 Sum_probs=339.0
Q ss_pred CcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHH
Q 009090 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (544)
Q Consensus 40 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~l 119 (544)
...++.++|+++++++|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999864 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeee
Q 009090 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (544)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (544)
||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ...+..+....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST----------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh----------------
Confidence 999999999999999999999999999999999999876544322111 11222222110
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHH
Q 009090 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (544)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (544)
+. .. ..........++++++++|||||||.||||++||+++.+.+..+...+ ++.++|++++..|++|..
T Consensus 167 ---~~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 236 (563)
T 1amu_A 167 ---IK-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 236 (563)
T ss_dssp ---TT-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred ---hc-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 00 00 011112334678999999999999999999999999998887766655 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
++...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+...
T Consensus 237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 290 (563)
T 1amu_A 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence 88777889999999998864 789999999999999999999988765210
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC--cc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC 433 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~--~~ 433 (544)
..+++|.+++||+++++++.+.|++ .+.+++.||+||++.+++...... ..
T Consensus 291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 343 (563)
T 1amu_A 291 -------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG 343 (563)
T ss_dssp -------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred -------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCC
Confidence 1148999999999999999999887 478999999999998766554332 22
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------CCccccCceEEEccC
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN 506 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~~ 506 (544)
...++|+|+++++++|+| +++ .+++.|+.|||+|+|++++.||+++|+.+.+.|. ++||+|||+|++|+|
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~d 420 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD 420 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred CCCcccceeCCCEEEEEC-CCc--CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCC
Confidence 346899999999999999 544 4566789999999999999999999999999883 249999999999999
Q ss_pred CcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 507 g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++++.||.||+|++ +|++|+|.+||++|.+||+|.|
T Consensus 421 G~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 421 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEE
T ss_pred CeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcce
Confidence 999999999999998 8999999999999999999864
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-63 Score=519.03 Aligned_cols=411 Identities=18% Similarity=0.222 Sum_probs=347.8
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEecCchhHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
.|+.++|+++|+++|+++|+++. + +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 37899999999999999999864 3 6899999999999999999985 888999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++|+.++++++|++.......... .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence 999999999999999999999999999999999975432211000 0123344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
+++...............++++++++|||||||.||+|.+||+++.+.+..+...+ ++..+|++++..|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554332222223345778999999999999999999999999999988877666 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999864 78999999999999999999999988754210
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
... ..++++|.++++|+++++++.+++.+.+ ++.+++.||+||+++.++......
T Consensus 254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000 1124899999999999999999999999 899999999999998776543222
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc--cCC--ccccCceEEEccCC
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~g 507 (544)
.....++|+|.++++++|+| +++ .+++.|+.|||+|+||.++.||+++|+.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 22335799999999999999 543 466778999999999999999999999999998 344 7999999999 599
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.||.||+|++ +|++|+|.+||++|.+||+|++
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 425 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRS 425 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEE
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcce
Confidence 99999999999998 8999999999999999999864
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-63 Score=521.55 Aligned_cols=412 Identities=18% Similarity=0.201 Sum_probs=342.5
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
.|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR----D-----AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC----C-----ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 3 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeHH
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (544)
+++|++++|+++.++.+++.++++.++++++|++....... .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999975432110 00 0111100 111
Q ss_pred HHHhc-ccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 202 ~l~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
++... ............++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 11111 11112223345789999999999999999999999999999988877766 7899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999987653211
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~---- 431 (544)
... ..++++|.+++||+++++++.++|.+.+ ++.+++.||+||+++.++......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 001 1224899999999999999999999999 889999999999998776554332
Q ss_pred ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc----CCccccCceEEEccCC
Q 009090 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (544)
Q Consensus 432 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~g 507 (544)
.....++|+|.+++++++++ +++ .+++.|+.|||+++||.++.||+++|+.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDG--TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSS--CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCC--CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346799999999999999 544 4566789999999999999999999999999883 459999999999 799
Q ss_pred cEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 508 ~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++++.||.||+|++ +|++|+|.+||++|.+||+|++
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~ 426 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEG 426 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEE
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999998 8999999999999999999864
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-63 Score=556.07 Aligned_cols=467 Identities=25% Similarity=0.332 Sum_probs=344.6
Q ss_pred ccCCCCCCCCCCcCcceeccccCCCCCCCCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHH
Q 009090 9 EEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQ 88 (544)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~ 88 (544)
++.-+..++++....+|++......+ +...|+.++|.++++++|+++|+++. +. + +++||+||.+++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~ 100 (979)
T 3tsy_A 32 SQVMEKQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQ 100 (979)
T ss_dssp -------------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHH
T ss_pred HHhhhhcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHH
Confidence 34445566777778888887543332 24589999999999999999999864 22 2 68999999999999
Q ss_pred HHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhccccc
Q 009090 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR 168 (544)
Q Consensus 89 la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 168 (544)
+|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++.+....+......
T Consensus 101 lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 180 (979)
T 3tsy_A 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND 180 (979)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT
T ss_pred HHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776554332211
Q ss_pred ccccccEEEEecCCchHHHHHHhhCCceeeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHH
Q 009090 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246 (544)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~ 246 (544)
. ...++.+++... .........+.++...... .........++++++|+|||||||.||+|+++|+++.
T Consensus 181 ~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~ 251 (979)
T 3tsy_A 181 D---GVVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLV 251 (979)
T ss_dssp S---CCEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHH
T ss_pred C---CceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHH
Confidence 1 123333333210 0011123455555433221 1223344678999999999999999999999999999
Q ss_pred HHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHH
Q 009090 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFE 324 (544)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (544)
..+....... .....+.++|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++.
T Consensus 252 ~~~~~~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 330 (979)
T 3tsy_A 252 TSVAQQVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVL 330 (979)
T ss_dssp HHHHHHHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred HHHHHHHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHH
Confidence 8876543321 11125778999999999999999865 5668999999999876 9999999999999999999999998
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHH
Q 009090 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404 (544)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~ 404 (544)
.+.+... ....+ +++||.+++||+++++++.++++
T Consensus 331 ~l~~~~~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~ 365 (979)
T 3tsy_A 331 AIAKSSE-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVN 365 (979)
T ss_dssp HHHHCGG-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHH
T ss_pred HHHhCcc-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHH
Confidence 8764211 11111 24899999999999999999999
Q ss_pred Hhc-CCceEEeeccccccCceeecc----CCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccc
Q 009090 405 VTC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479 (544)
Q Consensus 405 ~~~-~~~i~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy 479 (544)
+.+ ++.+++.||+||++.+++... .......+++|+|+++++++|+| ++. ..+++.|+.|||+|+|+.++.||
T Consensus 366 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~-~~~~~~g~~GEl~i~g~~v~~GY 443 (979)
T 3tsy_A 366 AKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDT-GDSLSRNQPGEICIRGHQIMKGY 443 (979)
T ss_dssp HHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTS-CCBCCTTCCEEEEEESTTSCSEE
T ss_pred HHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCC-CCCCCCCCccEEEEECCCccccc
Confidence 998 899999999999998766542 11223457899999999999999 432 35667789999999999999999
Q ss_pred cCChhhhhhcc-cCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 480 YKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 480 ~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+++|+.+.+.| .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|+|
T Consensus 444 ~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~ 508 (979)
T 3tsy_A 444 LNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITD 508 (979)
T ss_dssp TTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------
T ss_pred cCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999 7999999999999999999999999999998 7999999999999999999975
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=519.12 Aligned_cols=413 Identities=17% Similarity=0.165 Sum_probs=337.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|+++.++.+++.++++.++++++|++++....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876532211 00 1 1122
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 201 ~~l~~~~--~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
.++.... ...........++++++++|||||||.||+|++||+++.+.+....... ......+++++...|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223345789999999999999999999999999998776654431 1267889999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998864 88999999999999999999999887643110
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhc-CCceEEeeccccccCceeeccCCC--
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~-- 431 (544)
... ...+++|.+++||+++++++.+++.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 000 1124899999999999999999999998 899999999999998776543322
Q ss_pred --ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc----cCCccccCceEEEcc
Q 009090 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (544)
Q Consensus 432 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~ 505 (544)
.....++|+|.++++++|+| +++ .+++.|+.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDG--KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTS--CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCc--CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336899999999999999 544 456678999999999999999999999999988 356999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||++++.||.||+|++ +|++|+|.+||++|.+||+|.+
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~ 430 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVAS 430 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEE
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcce
Confidence 9999999999999997 7999999999999999999864
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-63 Score=517.35 Aligned_cols=421 Identities=22% Similarity=0.243 Sum_probs=337.0
Q ss_pred cHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHHH
Q 009090 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (544)
Q Consensus 43 tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~~ 122 (544)
|+.++|+++++++|+++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG----Q-----ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5899999999999999999986 89999999999999999999999
Q ss_pred hcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCce-eeeHH
Q 009090 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK-PYSWD 201 (544)
Q Consensus 123 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (544)
++|++++|+++.++.+++.++|+.++++++|++.+.......... ......+.......... ....... ....+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence 999999999999999999999999999999999876543322111 01111111000000000 0000000 00011
Q ss_pred HHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHH
Q 009090 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (544)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~ 281 (544)
.+...............++++++++|||||||.||+|.+||+++...+..+...+ ++.++|+++++.|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111123345789999999999999999999999999999988877766 78899999999999999999
Q ss_pred HHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 009090 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (544)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (544)
...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988653110
Q ss_pred CcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC-ccccCccC
Q 009090 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (544)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~G 439 (544)
...++|.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0017999999999999999999988 4999999999999987655543322 23457899
Q ss_pred cCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeecccee
Q 009090 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (544)
Q Consensus 440 ~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i 519 (544)
+|++++++++++ ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||++++.||.||+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999998 33 345799999999999999999998887 889999999999999999999999999999
Q ss_pred ecCCCceechHhHHHHhhcCCCccC
Q 009090 520 KISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 520 ~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
++ +|++|+|.+||++|.+||+|++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~ 425 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISD 425 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEE
T ss_pred EE-CCEEECHHHHHHHHHhCCCccE
Confidence 96 8999999999999999999974
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-62 Score=520.08 Aligned_cols=427 Identities=18% Similarity=0.234 Sum_probs=347.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
.+..|+.++|+++|+++|+++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35679999999999999999999876 42 23479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCC---hhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCc
Q 009090 119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (544)
|||+++|++++|++|..+ .+++.++++.+++++++++.+....+.............+..
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 145 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA----------------- 145 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE-----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce-----------------
Confidence 999999999999999884 578999999999999999988766653322111111111111
Q ss_pred eeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh
Q 009090 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (544)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 275 (544)
...+.+... ...........++++++|+|||||||.||||++||+++.+.+......+ ++.++|++++++|+
T Consensus 146 --~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 146 --IALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp --EEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred --eechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 111111110 0112233456789999999999999999999999999999998887766 78999999999999
Q ss_pred HHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 009090 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (544)
Q Consensus 276 ~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (544)
+|.+|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+.+...
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 281 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------- 281 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence 99999986 7778999999999864 7899999999999999999999998876532111
Q ss_pred HHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceEEeeccccccCc
Q 009090 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP 423 (544)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~YG~tE~~~~ 423 (544)
..... .++++|.+++||+++++++.++|.+.++ ..+++.||+||++++
T Consensus 282 ------------------~~~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 282 ------------------KKEGL--------DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp ------------------GGTTC--------CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred ------------------hccCC--------CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 01111 2248999999999999999999999873 369999999999988
Q ss_pred eeeccCC--------------------------CccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccc
Q 009090 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (544)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~ 477 (544)
++..... ......++|+|+++ ++|++ ++ +..+++.|+.|||+|+||.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PD-TLIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TT-TCCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CC-CCcCCCCCCEEEEEEeCCcccc
Confidence 7764321 11233678999988 78887 33 3466778899999999999999
Q ss_pred cccCChhhhhhcccC-------C--ccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHh-hcCCCcc
Q 009090 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE 543 (544)
Q Consensus 478 gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l-~~~~~V~ 543 (544)
||+++|+.+.+.|.+ | ||+|||+|++| ||+|+++||.||+|++ +|++|+|.|||++| ..+|+|.
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~ 485 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHV 485 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGG
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCcccc
Confidence 999999999999843 5 99999999999 9999999999999998 89999999999999 7888875
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-62 Score=510.33 Aligned_cols=409 Identities=26% Similarity=0.321 Sum_probs=332.7
Q ss_pred CCcccHHHHHHHHHHcCCC-CCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~ 117 (544)
..+.++.++|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578999999999999887 9999864 3 68999999999999998774 488999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCcee
Q 009090 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (544)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (544)
+|||+++|++++|++|.++.+++.++|+.++++++|++.+.... ........ +..+..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccc-cccccc---------------
Confidence 99999999999999999999999999999999999998652110 00111111 111110
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHH
Q 009090 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (544)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 277 (544)
...........++++++++|||||||.||||.++|+++.+.+..+...+ ++.++|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111122345678999999999999999999999999999998887777 7889999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 009090 278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (544)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (544)
..|+.. .+.++..|+++++.+. ++..+.+.+ ++++|+++++|+++..+.+.......
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 266 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------- 266 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------
Confidence 999875 7778999999999876 888899988 88999999999999988764321110
Q ss_pred HhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcccc
Q 009090 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (544)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~ 435 (544)
...++ +++|.+++||+++++++.+++.+.+++++++.||+||++..++..... ....
T Consensus 267 --------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~ 323 (505)
T 3nyq_A 267 --------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRA 323 (505)
T ss_dssp --------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCT
T ss_pred --------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCC
Confidence 00112 279999999999999999999999999999999999998776655443 3344
Q ss_pred CccCcCccCceEEEeecCCCCCCCC-CCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEEe
Q 009090 436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID 513 (544)
Q Consensus 436 ~~~G~~~~~~~v~i~~~~~~~~~~~-~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~G 513 (544)
+++|+|+++++++|+| +++...+. +.|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||.+++.|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence 8899999999999999 55544432 447899999999999999999999999999 69999999999999999999999
Q ss_pred ec-cceeecCCCceechHhHHHHhhcCCCccC
Q 009090 514 RK-KNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 514 R~-~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|. ||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~ 433 (505)
T 3nyq_A 403 RKATDLIKS-GGYKIGAGEIENALLEHPEVRE 433 (505)
T ss_dssp ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred CccCceEEe-CCEEECHHHHHHHHHHCcCccE
Confidence 98 599997 8999999999999999999974
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=514.81 Aligned_cols=425 Identities=17% Similarity=0.137 Sum_probs=318.9
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCC----CCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP 112 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~ 112 (544)
...+..|+.++|+++|+++|+++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 3456788999999999999999999876 32 22334789999999999999999999999 7999999999999
Q ss_pred hHHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhh
Q 009090 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 113 ~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (544)
++++++|||+++|++++|+++.++.+++.++|+.++++++|++++...... ......++.... .
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~--~-------- 154 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN--Q-------- 154 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC--H--------
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc--h--------
Confidence 999999999999999999999999999999999999999999876544321 011112222111 0
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhh---cccCCCCCCcEE
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVY 269 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~ 269 (544)
.+.+..... ..........++++++++|||||||.||||++||+++.+.+..+...+. .....+...+++
T Consensus 155 ------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (562)
T 3ite_A 155 ------SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF 227 (562)
T ss_dssp ------HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred ------hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence 122222111 1111223346788999999999999999999999999888776554321 111247788999
Q ss_pred EEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 009090 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (544)
Q Consensus 270 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (544)
++..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|++.++|+++..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------ 289 (562)
T 3ite_A 228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------ 289 (562)
T ss_dssp ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------
T ss_pred EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------
Confidence 999999998888777888999999988765 467889999999999999999987654210
Q ss_pred HHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeec
Q 009090 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (544)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 427 (544)
. ...++||.+++||+++++++.++|++.+++.+++.||+||++..++..
T Consensus 290 -----------------------~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 290 -----------------------P--------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp -----------------------G--------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred -----------------------c--------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 0 012489999999999999999999998899999999999999887776
Q ss_pred cCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCC--ccccCceEEEcc
Q 009090 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILP 505 (544)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~~ 505 (544)
.........++|+|++++++++++ ++ +..+++.|+.|||+|+|+.++.||+++|+.+...+.+| ||+|||+|++|+
T Consensus 339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~ 416 (562)
T 3ite_A 339 RILPDSDTRCIGHPLGDSVAHVLA-PG-SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA 416 (562)
T ss_dssp ECCTTSCTTEEEEECTTCEEEEEC-TT-SSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred eecCCCCCccccccCCCCeEEEEe-CC-CCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence 555544557899999999999998 33 33556788999999999999999999999888777777 999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~ 540 (544)
||++++.||.||+|++ +|++|+|.|||++|.+|+
T Consensus 417 dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~ 450 (562)
T 3ite_A 417 DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLS 450 (562)
T ss_dssp TSCEEEEEEC-------------------------
T ss_pred CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcC
Confidence 9999999999999997 899999999999999883
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=535.23 Aligned_cols=411 Identities=21% Similarity=0.262 Sum_probs=344.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..++.++|+.+++++|+++|+++. + +++||+||.++++++|++|++.|+++|++|+++++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS----G-----QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++.+++.++|+.++++++|++.+....+... ......+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654432111 1112223322210
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHH
Q 009090 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (544)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (544)
.+. ...........++++++++|||||||.||||+++|+++.+.. .....+ .++++|+++...|+.|..+
T Consensus 592 -~~~---~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -RFE---EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -GGG---SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred -ccc---cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 000 011112234578899999999999999999999999998763 333333 6789999999999999888
Q ss_pred HHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
...++.++..|+++++.+. ++..+.+.+.++++|+++++|+++..+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999874 889999999999999999999999887542100
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC-CceEEeeccccccCceeeccCCC---c
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M 432 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~~~~~~~---~ 432 (544)
.+ ++||.+++||+++++++.+.|.+.++ ..+++.||+||++.+++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 01 28999999999999999999988874 68999999999998877654322 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhccc-------CCccccCceEEEcc
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 505 (544)
....++|+|+++++++|+| +++ .+++.|+.|||+|+|+++++||+++|+.|.+.|. ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336799999999999999 443 5667789999999999999999999999999982 34999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.|+++||.||+||+ +|++|+|.|||++|.+||+|++
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~ 888 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKD 888 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCE
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCce
Confidence 9999999999999998 7999999999999999999974
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=479.06 Aligned_cols=404 Identities=16% Similarity=0.188 Sum_probs=313.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHH
Q 009090 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~ 116 (544)
..-...++.++|+++++++||++|+++....++.++.++++||+||.++++++|++|++.|+ +||+|+++++|++++++
T Consensus 19 ~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 19 SHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp -----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHH
T ss_pred CCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHH
Confidence 33457899999999999999999999871111345556899999999999999999999996 99999999999999999
Q ss_pred HHHHHHhcCCEEeecCC---CCChhHHHHHHHhcCceEEEEccchhhHhhcccccccc-cccEEEEecCCchHHHHHHhh
Q 009090 117 AMEACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 117 ~~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 192 (544)
++|||+++|++++|+++ .++.+++.++|+.++++++|++.+....+......... ....++..+...
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 168 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD--------- 168 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC---------
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc---------
Confidence 99999999999999998 77899999999999999999998877665443321110 011222221110
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCC------C
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------D 266 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~ 266 (544)
. ............++++++|+|||||||.||||++||+++.+.+......+ .+.. +
T Consensus 169 ------------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~ 230 (480)
T 3t5a_A 169 ------------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPN 230 (480)
T ss_dssp ------------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTT
T ss_pred ------------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCC
Confidence 0 00111223345778999999999999999999999999999888777665 4555 8
Q ss_pred cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchH
Q 009090 267 DVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340 (544)
Q Consensus 267 d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~ 340 (544)
|++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|.++..++.....
T Consensus 231 d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-------- 301 (480)
T 3t5a_A 231 SALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-------- 301 (480)
T ss_dssp EEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC--------
T ss_pred CeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC--------
Confidence 99999999999999775 6778999999999863 899999999999999 88899888776542110
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC------CceEEe
Q 009090 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQG 414 (544)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~ 414 (544)
....... .+++||.+++||+++++++.++|++.++ ..+++.
T Consensus 302 -------------------------~~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (480)
T 3t5a_A 302 -------------------------DDDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPS 348 (480)
T ss_dssp -------------------------TGGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEE
T ss_pred -------------------------ccccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccc
Confidence 0011111 2248999999999999999999999884 369999
Q ss_pred eccccccCceeeccCCC------------------------ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEE
Q 009090 415 YGLTETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470 (544)
Q Consensus 415 YG~tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v 470 (544)
||+||++.+++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|
T Consensus 349 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v 425 (480)
T 3t5a_A 349 YWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWV 425 (480)
T ss_dssp EEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEE
T ss_pred ccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEE
Confidence 99999998877765432 123358999999 9999999 442 35567789999999
Q ss_pred ecCCccccccCChhhhhhcc------------cCCccccCceEEEccCCcEEEEee
Q 009090 471 RGKTLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (544)
Q Consensus 471 ~~~~v~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~g~l~~~GR 514 (544)
+|+.++.||+++|+.+.+.| .+|||+|||+|++| ||+|+++||
T Consensus 426 ~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred eCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999999988 35699999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=325.54 Aligned_cols=242 Identities=19% Similarity=0.138 Sum_probs=204.3
Q ss_pred CCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 009090 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (544)
Q Consensus 219 ~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 298 (544)
.+++++|+|||||||.||||++||+++.+.+..+...+ +++++|++++++|++|.+|+...+.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46889999999999999999999999999998887777 8899999999999999999988888999999999886
Q ss_pred CChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHH
Q 009090 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (544)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (544)
.. ...++.++++++|++.++|+++..+++.... ..++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 52 2345678899999999999999888652110 0112
Q ss_pred HHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeecCCCCCC
Q 009090 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (544)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~ 458 (544)
++||.+++||+++++++.+++++. ++++++.||+||+++.++......... +++|.+.|++++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 389999999999999999999874 999999999999998877766554433 7889999999888744
Q ss_pred CCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHh--
Q 009090 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (544)
Q Consensus 459 ~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l-- 536 (544)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+|++ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999997 89999999999877
Q ss_pred -hcCCCccC
Q 009090 537 -CVAPIIED 544 (544)
Q Consensus 537 -~~~~~V~~ 544 (544)
.+||+|.+
T Consensus 272 ~~~~p~V~~ 280 (358)
T 4gs5_A 272 VFHHLNIGN 280 (358)
T ss_dssp HHHHHTCCC
T ss_pred hccCCCccE
Confidence 46788764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=326.37 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=214.1
Q ss_pred CCCC-CCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 009090 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (544)
Q Consensus 216 ~~~~-~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 293 (544)
...+ +++++++|||||||.||+|.++|+++...+..+...+.. .++.++|+++...|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 889999999999999999999999998777665433211 2678999999999987655554 46667899999
Q ss_pred EEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHH
Q 009090 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (544)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (544)
+++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------------ 202 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------------ 202 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------------
Confidence 998765 8999999999999999999999999987654332110
Q ss_pred hHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccccCccCcCccCceEEEeec
Q 009090 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
...+++|.+++||+++++++.+++++.||+++++.||+||+++.++...... ....+.+.++++++|+|
T Consensus 203 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d- 271 (436)
T 3qov_A 203 -------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---QNGMHFWEDCYLVEIID- 271 (436)
T ss_dssp -------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---CSSEEECTTTEEEEEEC-
T ss_pred -------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---CCeeEEccCceEEEEEE-
Confidence 0024899999999999999999999999999999999999965433222111 12356677899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccCC------c---EEEEeeccceeecCC
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ 523 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g------~---l~~~GR~~d~i~~~~ 523 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|+++++| + +++.||.||+|++ +
T Consensus 272 ~~~-g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 272 PET-GEPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTT-CSBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCC-CCCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 333 35677889999999983 2334578999999999999998 5 6999999999998 7
Q ss_pred CceechHhHHHHhhcCCCccC
Q 009090 524 GEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 524 g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|++|+|.+||++|.+||+|.+
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~ 358 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGS 358 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEE
T ss_pred CEEECHHHHHHHHHhCcCcCC
Confidence 999999999999999999863
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=321.58 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=213.9
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 009090 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (544)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (544)
...++++++++|||||||.||+|.+||+++...+..+...+.. .++.++|+++...|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4467889999999999999999999999988776554432211 267889999999998 6777777777889999999
Q ss_pred EEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHh
Q 009090 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (544)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (544)
++.+. ++..+++.++++++|+++++|+++..|++.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88766 99999999999999999999999999876543211000
Q ss_pred HHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCc-eeeccCCCccccCccCcCccCceEEEeec
Q 009090 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
..+++|.+++||+++++++.+++++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 0138999999999999999999999899999999999998543 332222111 1245567899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc-CCcE-----EEEeeccceeecCCCce
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~g~l-----~~~GR~~d~i~~~~g~~ 526 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.||+|++ +|++
T Consensus 277 ~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 277 PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 432 35677889999999982 33445789999999999998 6985 899999999998 8999
Q ss_pred echHhHHHHhhcCCCccC
Q 009090 527 VALEYLENVYCVAPIIED 544 (544)
Q Consensus 527 v~~~~iE~~l~~~~~V~~ 544 (544)
|+|.+||++|.+||+|.+
T Consensus 343 v~p~eiE~~l~~~p~V~~ 360 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAP 360 (437)
T ss_dssp ECHHHHHHHHTTCTTBCS
T ss_pred ECHHHHHHHHHhCcCcCc
Confidence 999999999999999964
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=321.77 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=213.0
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 009090 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (544)
Q Consensus 216 ~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (544)
...++++++++|||||||.||+|.++|+++......+...+.. .++.++|+++...|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467889999999999999999999999988776554432211 267899999999998 5777766677788999999
Q ss_pred EEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCcCCcchHHHHHh
Q 009090 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (544)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (544)
++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------------------------- 208 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------------------------- 208 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------------------------
Confidence 88766 9999999999999999999999999887653321100
Q ss_pred HHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCc-eeeccCCCccccCccCcCccCceEEEeec
Q 009090 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (544)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~ 452 (544)
+ ..+++|.+++||+++++++.+++++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 209 ~------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 209 P------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp G------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred c------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0 0138999999999999999999999999999999999998543 332221111 1244567899999998
Q ss_pred CCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC-CcE-----EEEeeccceeecCCCce
Q 009090 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (544)
Q Consensus 453 ~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-g~l-----~~~GR~~d~i~~~~g~~ 526 (544)
+++ ..+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 432 35667889999999983 233456899999999999999 986 899999999998 7999
Q ss_pred echHhHHHHhhcCCCccC
Q 009090 527 VALEYLENVYCVAPIIED 544 (544)
Q Consensus 527 v~~~~iE~~l~~~~~V~~ 544 (544)
|+|.+||++|.+||+|.+
T Consensus 345 v~p~eiE~~l~~~p~V~~ 362 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSG 362 (443)
T ss_dssp ECHHHHHHHHHTSTTEEE
T ss_pred ECHHHHHHHHHhCcCcCc
Confidence 999999999999999853
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=243.75 Aligned_cols=236 Identities=17% Similarity=0.167 Sum_probs=172.6
Q ss_pred CCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 009090 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (544)
Q Consensus 217 ~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~~ 295 (544)
..++++++++|||||||.||+|.++|+++...+..+...+.. .++.++|+++...|+ +|..++...+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EE
Confidence 367889999999999999999999999999988754433211 267889999999999 99999888777788999 44
Q ss_pred Eec-CChh-----------------------hHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 009090 296 YYH-GDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (544)
Q Consensus 296 ~~~-~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (544)
+.. .++. .+++.++++++|++.++|+++..|++.....
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------ 226 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------ 226 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh------------------
Confidence 443 3666 7777999999999999999999987642211
Q ss_pred HHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHH-Hhc-CCceEEeeccccccCceeeccC
Q 009090 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFP 429 (544)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~i~~~YG~tE~~~~~~~~~~ 429 (544)
..++ +++|.+++||+++++++.++++ +.| ++.+++.||+||+++++..++.
T Consensus 227 -------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 227 -------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp -------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred -------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 1112 2899999999999999999999 899 8999999999999877654321
Q ss_pred CCccccCccCcC------ccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEE
Q 009090 430 DEMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (544)
Q Consensus 430 ~~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 503 (544)
.++|.+ .++++++|+| +++ ..+++.|+.|||+|++.... .+ --+|+|||++..
T Consensus 280 ------~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 ------TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIR 338 (369)
T ss_dssp ------CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEE
T ss_pred ------ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEE
Confidence 148888 9999999998 422 35677889999999973211 11 123889999988
Q ss_pred ccC--C-------cEEEEeeccceeec
Q 009090 504 LPN--G-------VVKIIDRKKNLIKI 521 (544)
Q Consensus 504 ~~~--g-------~l~~~GR~~d~i~~ 521 (544)
.+. | .+..++|.++..++
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC--------
T ss_pred ecCCCCCcCcccccceeccccCCCcee
Confidence 543 2 23344555555554
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=98.09 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=83.0
Q ss_pred Cc---ccEEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccCc-CccCc-eEEEeecCCC
Q 009090 383 GR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEM 455 (544)
Q Consensus 383 ~~---lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~~~~ 455 (544)
++ +..+++||- ..-...++..+ +.+++ ..|++||+ .+.....+.. .+...+. .+|+. =...++.++.
T Consensus 297 Pnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 297 PNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp TTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTS--CGGGCCEEECTTSSEEEEEECSTT
T ss_pred CCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 57 444455552 33334455544 67777 99999995 2332222211 1112222 23333 2234442221
Q ss_pred C------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc----CCcEEEEeeccceeecCCCc
Q 009090 456 G------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGE 525 (544)
Q Consensus 456 ~------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~g~l~~~GR~~d~i~~~~g~ 525 (544)
. ...+..|+.+||.++..+ |.|+ |++||+.++.. ..++.|.||.+++|++ .|+
T Consensus 371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp CCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSC
T ss_pred CCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eee
Confidence 1 122446778999998752 3333 99999999975 3579999999999997 799
Q ss_pred eechHhHHHHhhcC
Q 009090 526 YVALEYLENVYCVA 539 (544)
Q Consensus 526 ~v~~~~iE~~l~~~ 539 (544)
++++.+||++|.+.
T Consensus 434 kl~~~~v~~al~~a 447 (581)
T 4eql_A 434 KTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH
Confidence 99999999999854
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-07 Score=95.22 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=82.1
Q ss_pred Cccc---EEEEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccC-cCccCc-eEEEeecCCC
Q 009090 383 GRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM 455 (544)
Q Consensus 383 ~~lr---~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~~ 455 (544)
+++| .+++|| + ..-...++..+ +.+++ ..|++||+. +.....+.. .++..+ ..+|+. =...++.++.
T Consensus 302 Pnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~ 375 (609)
T 4b2g_A 302 PNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHS 375 (609)
T ss_dssp TTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEGGGT
T ss_pred CCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEecccc
Confidence 5755 444455 2 22334555444 67777 999999963 333222211 111222 223333 1223332221
Q ss_pred ------C-------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEcc----CCcEEEEeeccce
Q 009090 456 ------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNL 518 (544)
Q Consensus 456 ------~-------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~g~l~~~GR~~d~ 518 (544)
. ...+..|+.+||.++.. .|.|+ |++||++++.. ...+.|.||.+++
T Consensus 376 ~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 376 SIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVL 439 (609)
T ss_dssp TSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCC
T ss_pred ccccccCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCe
Confidence 0 12345677899999764 34444 99999999974 3689999999999
Q ss_pred eecCCCceechHhHHHHhhc
Q 009090 519 IKISQGEYVALEYLENVYCV 538 (544)
Q Consensus 519 i~~~~g~~v~~~~iE~~l~~ 538 (544)
|++ .|+++++.+||+++.+
T Consensus 440 l~~-~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 440 LSI-DSDKTDEAELQKAVDN 458 (609)
T ss_dssp BCS-SSCCBCHHHHHHHHHH
T ss_pred EEc-cccCCCHHHHHHHHHH
Confidence 997 7999999999999874
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-07 Score=91.66 Aligned_cols=136 Identities=21% Similarity=0.159 Sum_probs=82.2
Q ss_pred hCCcccEE--EEcCCCCCHHHHHHHHHhc-CCceE-EeeccccccCceeeccCCCccccCccC-cCccCc-eEEEeecCC
Q 009090 381 LGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPE 454 (544)
Q Consensus 381 ~~~~lr~i--~~~G~~l~~~~~~~~~~~~-~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~~~ 454 (544)
.=+++++| +++|.. ..-...++..+ +.+++ ..|++||+ .+.....+.. .++..+ ..+|+. =...++.++
T Consensus 300 lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 300 LFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp HCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC--
T ss_pred hCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEeccc
Confidence 34778643 344432 22334555555 67777 89999996 3333222221 111222 233333 112333221
Q ss_pred CC--------CCCCCCCCCCeEEEecCCccccccCChhhhhhcccCCccccCceEEEccC----CcEEEEeeccceeecC
Q 009090 455 MG--------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKIS 522 (544)
Q Consensus 455 ~~--------~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----g~l~~~GR~~d~i~~~ 522 (544)
.. ...+..|+.+||.++..+ |.|+ |++||+.++..- ..+.|.||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~- 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI- 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-
Confidence 11 123556788999998742 3333 999999999642 479999999999998
Q ss_pred CCceechHhHHHHhhc
Q 009090 523 QGEYVALEYLENVYCV 538 (544)
Q Consensus 523 ~g~~v~~~~iE~~l~~ 538 (544)
.|+++++.+||+++.+
T Consensus 438 ~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 438 NIDKNTERDLQLSVES 453 (581)
T ss_dssp SSCCBCHHHHHHHHHH
T ss_pred eeeECCHHHHHHHHHH
Confidence 7999999999999875
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=1.5 Score=43.82 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=80.3
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEee
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (544)
.++.++.+.. ..|.+|.. ..+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3455554433 14555543 4679999988888888877788999999999888853 3344567888999999887
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
++. .+.+.+...++..++.+++........+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 755 478899999999999999998887766544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.56 E-value=1.5 Score=43.77 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CCCCceE-eecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEee
Q 009090 56 PGNRMLG-WRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (544)
Q Consensus 56 p~~~a~~-~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (544)
++.++.+ +. .|.+|.. ..+|...+...+..++..+...|+.++|+++..++.+ ...+...++++..|+.+++
T Consensus 91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 4455533 33 4666654 4678999988888888878788999999999888853 3345567888899999888
Q ss_pred cCCCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
+.+. +.+++...+++.++.+++........+.+
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 7654 78899999999999999998887766544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=1.4 Score=43.87 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=79.6
Q ss_pred CCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCc--hhHHHHHHHHHhcCCEEeecC
Q 009090 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (544)
Q Consensus 57 ~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~i~ 132 (544)
+.++.+.. -.|.+|.. ..+|...+...+..++..+...++.++|+++...+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44454433 14555543 4679999998888888888888999999999888753 334556788899999988775
Q ss_pred CCCChhHHHHHHHhcCceEEEEccchhhHhhc
Q 009090 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
+ ..++.+...+++.++.+++........+.+
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 194 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAE 194 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHH
Confidence 4 467889999999999999998887766544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=85.92 E-value=10 Score=38.39 Aligned_cols=121 Identities=8% Similarity=0.027 Sum_probs=83.5
Q ss_pred CCCCCceEeecccCCCCCCc--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh-HHHHHHHHHhcCCEEeec
Q 009090 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~i 131 (544)
.|+.+|++.. -.|.+|.. ..+|...+...+..... ..++.++|+++..+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4566666554 13455543 46788888777665544 3588999999888885432 344467888899998877
Q ss_pred CCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecC
Q 009090 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (544)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (544)
+ ..+++.+...+++.++.+++........+..........++.++.-.+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467899999999999999999988877765544333235555554433
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=8.1 Score=37.22 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=70.5
Q ss_pred CCCCCceEeecccCCCCCCce--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCch--hHHHHHHHHHhcCCEEee
Q 009090 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (544)
Q Consensus 55 ~p~~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~ 130 (544)
.++.++.+.. ..|.+|..+ .+|...+...+...+..+...|+.++|+++.++|-+. --+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455454433 145566544 5688888887776666677779999999999988632 234445566889995554
Q ss_pred cCCCCChh-----------------------HHHHHHHhcCceEEEEccchhhHhhc
Q 009090 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS 164 (544)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (544)
. ..++. ++..++++.++.++++.......+.+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 3 33444 67778999999999998887766643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 544 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-65 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 9e-59 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-53 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-45 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-38 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-37 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-31 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 221 bits (565), Expect = 3e-65
Identities = 85/528 (16%), Positives = 167/528 (31%), Gaps = 74/528 (14%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
D LN A + +Q+ + W + +Y+E++ +V + + L
Sbjct: 67 EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123
Query: 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
G + G V IY P+ AM AC + + ++ P AV + + V D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183
Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
+ V+ S + + V + ++ + W L E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243
Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
+ + I+YTSG++G PKGV+ T + + ++ + D+Y
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299
Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
+ + Y GA+ + G + + + + +L P
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358
Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
A M G K E + + L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376
Query: 386 RLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
R++ S G P++ E E+ +V + TET G P + + G+A
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
+ L V G P + G + + + + + ++ +
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
+GD + +G I R +++ +S G + +E+ P I +
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAE 540
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 202 bits (513), Expect = 9e-59
Identities = 119/527 (22%), Positives = 185/527 (35%), Gaps = 87/527 (16%)
Query: 33 GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
FPS D +LN WD + + ++ G TY EVY+ +++
Sbjct: 1 AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54
Query: 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
LRA G G RV G N + +EA A + + L P + +IL+HAE D
Sbjct: 55 GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113
Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
V + D + L+ + ++ V E
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159
Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
E + + C + YT+GT+G PKGVV +H + ++ DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216
Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
+P+ H+ + GA D +L + T AGVP V+
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271
Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
L + + LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291
Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
+ GG+ + + QGYGLTET F +++ +
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350
Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
G LR+ + E P D GEV ++G + GYY N + TR ++ DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409
Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
GDI G V+I DR K+LIK GE+++ LEN P +++
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKE 455
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 190 bits (482), Expect = 1e-53
Identities = 87/533 (16%), Positives = 173/533 (32%), Gaps = 81/533 (15%)
Query: 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
++ LN ++ K P + + + G+ TYKE+ EEV Q+ L S
Sbjct: 54 LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110
Query: 97 -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
G G V +Y P+ + + A + + I ++ ++ ++ + V
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170
Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
D+ + K ++ R +R ++ + + +V
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226
Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
P + ++YTSG++G PKGV + L ++ +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282
Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
V+ + + I Y G + + G + + D + E K T P
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342
Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
R L+R + + L
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361
Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
LR + S G P++ EV E+ +V Y TE+ + + G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419
Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESII--- 491
+A + + + P G G + V+ + +KN D ++ +
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
G++ TGD +G + I+ R +++ +S G ++ +E PI+ +
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAE 530
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 165 bits (418), Expect = 2e-45
Identities = 112/509 (22%), Positives = 186/509 (36%), Gaps = 70/509 (13%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
TA + ++++Y P F D + TY E +E +++ A++ G
Sbjct: 18 TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69
Query: 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
R+ + N Q+ + + + P D + ++ ++ VFV K
Sbjct: 70 NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129
Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
++++L+ ++L ++ + ++ Q+ + + + + +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185
Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
I IM +SG++G PKGV L H T S + F +++ D LS +P H
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243
Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
+ G V Y + L + K VP +F
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
K L L + SGGAPLS
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318
Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
E E + + QGYGLTET + P+ G G V + E ++ ++
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377
Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
++ GE+CVRG + SGY NP+ T I DGW H+GDI + I+DR
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIED 544
K+LIK G VA LE++ P I D
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFD 463
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 145 bits (367), Expect = 1e-38
Identities = 84/504 (16%), Positives = 143/504 (28%), Gaps = 75/504 (14%)
Query: 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
+ T ++ + + P + T+ E+ V + + L A G P
Sbjct: 1 MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53
Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
RV + N V A+ A + L + L L + ++ E+ + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113
Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
S R+ + PYS+ +E +P
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
I YTSGT+G PK S V Q + +V L +PL H++
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
+
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
+ + ++ + +A A A +K LR V GA + V
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
E + V YG TE + P + V + +
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346
Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
+ + + F GY P T E + DGW+ T D+ P G V+I+ R ++I
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 521 ISQGEYVALEYLENVYCVAPIIED 544
GE + +E V AP + +
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTE 429
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 143 bits (360), Expect = 1e-37
Identities = 81/509 (15%), Positives = 160/509 (31%), Gaps = 98/509 (19%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T +F V K P N + + + TY E+ + Q+ G
Sbjct: 24 TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
VGI + A VP+ + +ILD ++ + Q V +
Sbjct: 75 LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
+Q + ++E + +P + ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168
Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
++YTSGT+G+PKG +L H+ I+ + +T D F ++
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223
Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
GAS+ ++
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
+ + + ++ + + +L+ + +I+ G+ S +
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296
Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
+ + YG TET T + + + + ++ V E
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
GE+C+ G+ L GY+K P+LT + + + + TGD + L +G ++ + R
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIED 544
N +KI G V LE +E++ I +
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISE 441
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 125 bits (313), Expect = 3e-31
Identities = 86/506 (16%), Positives = 157/506 (31%), Gaps = 78/506 (15%)
Query: 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
T D+ KY R + G W +Y+E+ ++ + + G +
Sbjct: 26 TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
RV + N ++ E + A L + V + + + + AE + D
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
R Q K ++ I +EFL L ++ + P+
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
++ + + G++G K + TH+ + + + + + L
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
G V P
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
F + + K+ + + + L+++ GGA S E
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
++ L Q +G+ E T E +V T G P+S Y E R+ +
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372
Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
+ G + RG GYYK + S + G++ TGDI ++ +G + + R K+
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432
Query: 519 IKISQGEYVALEYLENVYCVAPIIED 544
I GE VA E +EN P + D
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHD 457
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 544 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 81.48 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.6e-63 Score=531.90 Aligned_cols=443 Identities=16% Similarity=0.216 Sum_probs=354.6
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA~ 121 (544)
|-..++|+++++.+||++|+++. ....++.+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 72 N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~ 148 (643)
T d1pg4a_ 72 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 148 (643)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence 34456788899999999999986 445566789999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHh---------hcc-cccccccccEEEEecCCchHHHHHHh
Q 009090 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL---------LSP-DCRSAQRLRVMVCFTSLTAEQKEMAV 191 (544)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (544)
+++|++++|+++.++++++.++|++++++++|+++...... ... ..........++......... .
T Consensus 149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~ 224 (643)
T d1pg4a_ 149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----D 224 (643)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----C
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----c
Confidence 99999999999999999999999999999999987542211 111 111223445555554432110 0
Q ss_pred hCCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhh-hhhhhhcccCCCCCCcEEE
Q 009090 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL 270 (544)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 270 (544)
........+.+..... ..........++++++|+|||||||.||||++||++++..... +...+ .+.++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~ 298 (643)
T d1pg4a_ 225 WQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 298 (643)
T ss_dssp CCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred cccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEE
Confidence 0011122333333322 2233444567899999999999999999999999997655443 33333 688999999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHH
Q 009090 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (544)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
+..|++|++++.. ++.+++.|++++++++ ++..+++.++++++|+++++|+++..|++....
T Consensus 299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~------------ 366 (643)
T d1pg4a_ 299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------ 366 (643)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch------------
Confidence 9999999999876 5567999999999764 788999999999999999999999887643111
Q ss_pred HHHHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeecccccc
Q 009090 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC 421 (544)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE~~ 421 (544)
.....+ +++||.++++|+++++++.+++.+.++ +++++.||+||++
T Consensus 367 -----------------------~~~~~d--------l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g 415 (643)
T d1pg4a_ 367 -----------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415 (643)
T ss_dssp -----------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred -----------------------hccccC--------CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhcc
Confidence 111112 248999999999999999999999984 6799999999999
Q ss_pred CceeeccCCC-ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---cCCcc
Q 009090 422 GPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWF 495 (544)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~g~~ 495 (544)
+.++...+.. ....+++|+|++|++++++| +++ .+++.++.|||+|+| |+++.||+++++.+.+.+ .+|||
T Consensus 416 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g--~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 492 (643)
T d1pg4a_ 416 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 492 (643)
T ss_dssp SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred ceEEecCCCccCCCCCccccccCCCEEEEEC-CCC--CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence 8777655443 44568999999999999999 554 345667899999999 578899999998887765 58999
Q ss_pred ccCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 496 ~TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+|||+|++|+||+++++||.||+|++ +|++|+|.|||++|.+||+|+|
T Consensus 493 ~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~e 540 (643)
T d1pg4a_ 493 FSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAE 540 (643)
T ss_dssp EEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEE
T ss_pred EcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 99999999999999999999999997 7999999999999999999975
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.4e-62 Score=515.15 Aligned_cols=435 Identities=25% Similarity=0.340 Sum_probs=355.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
+...||.++|+++|+++||++|+++. .+++++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~-----~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL-----HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC-----TTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe-----cCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 55668999999999999999999865 3466788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|++|.++.+++.++|+.+++++++++............ ........+........ ...
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPE----------GYL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCT----------TCE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeeccccc----------ccc
Confidence 9999999999999999999999999999999999999888776644332 33444444444332211 011
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
..... ...........++++++++|||||||.||+|+++|.+++.......... .......+++++.+|++|.
T Consensus 152 ~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 152 AYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp EHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSH
T ss_pred ccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhh
Confidence 11111 0112233455788999999999999999999999999986654433222 2256789999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (544)
+++...+..+..|+++++... ++..+...+.++++|++.++|.++..++.......
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~---------------------- 282 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 282 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc----------------------
Confidence 999888888888888877655 89999999999999999999999998876543321
Q ss_pred hcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCc----
Q 009090 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM---- 432 (544)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~---- 432 (544)
...++||.+++||++++++..+++++. +..+++.||+||++..+........
T Consensus 283 -----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~ 338 (534)
T d1v25a_ 283 -----------------------HRLKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESL 338 (534)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------ccccceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCcccccc
Confidence 123589999999999999999998865 9999999999999998877644321
Q ss_pred ------cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEcc
Q 009090 433 ------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (544)
Q Consensus 433 ------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (544)
...+++|+|+||++++|+| +++...+.+.++.|||+|+|+.++.||+++++.+.+.| .+|||+|||+|++++
T Consensus 339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~ 417 (534)
T d1v25a_ 339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 417 (534)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECC
Confidence 2336899999999999999 77777777778899999999999999999999999888 889999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||++++.||.+|+|++ +|++|+|.+||++|.+||+|+|
T Consensus 418 ~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~ 455 (534)
T d1v25a_ 418 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKE 455 (534)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC---------
T ss_pred CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcce
Confidence 9999999999999997 7999999999999999999975
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-61 Score=521.67 Aligned_cols=447 Identities=17% Similarity=0.220 Sum_probs=354.4
Q ss_pred ccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 42 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
|...++|+++|+++||++|+++. ..+++..+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++||
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA 135 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 135 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 55688999999999999999986 556677789999999999999999998 57999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhH--------hhcccccccccccEEEEecCCchHHHHHHhh
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (544)
|+++|++++|+++.++++++.++++.+++++++++...... .......................... ..
T Consensus 136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 212 (640)
T d1ry2a_ 136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AF 212 (640)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CC
T ss_pred hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---cc
Confidence 99999999999999999999999999999999998754321 11111112223333333322211000 00
Q ss_pred CCceeeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEe
Q 009090 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (544)
Q Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (544)
.......+...... ........+..++++++|+|||||||.||||+++|.+++.......... ..+.++|++++.
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~~ 287 (640)
T d1ry2a_ 213 HAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTA 287 (640)
T ss_dssp CSSSEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEEC
T ss_pred cccccccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceeec
Confidence 00111222222221 1223334455778999999999999999999999999877665544322 268899999999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEecC-----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 273 ~p~~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
+|++|++++.. ++.++..|+++++.++ ++..+++.++++++|++.++|.++..|.+...
T Consensus 288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------- 352 (640)
T d1ry2a_ 288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 352 (640)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccc---------------
Confidence 99999999875 6668999999988764 78899999999999999999999987643110
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcC---CceEEeeccccccCc
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGP 423 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~YG~tE~~~~ 423 (544)
...+..++ ++||.+++||+++++++.+++++.+| ..+++.||+||++..
T Consensus 353 --------------------~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~ 404 (640)
T d1ry2a_ 353 --------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 404 (640)
T ss_dssp --------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred --------------------cccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence 00111222 48999999999999999999999985 469999999999988
Q ss_pred eeeccCCC--ccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec--CCccccccCChhhhhhcc---cCCccc
Q 009090 424 TTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFH 496 (544)
Q Consensus 424 ~~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~--~~v~~gy~~~~~~~~~~~---~~g~~~ 496 (544)
+....... ....+++|+|+++++++|+| ++++....+.++.|||++++ |+++.||+++++.+.+.| .+|||+
T Consensus 405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~ 483 (640)
T d1ry2a_ 405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF 483 (640)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence 77655443 34558999999999999999 66666665666779999998 689999999999998887 459999
Q ss_pred cCceEEEccCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 497 TGDlg~~~~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|||+|++|+||+|+++||.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 484 TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~ 530 (640)
T d1ry2a_ 484 TGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAE 530 (640)
T ss_dssp EEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEE
T ss_pred cCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 9999999999999999999999997 8999999999999999999974
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=9.6e-61 Score=504.76 Aligned_cols=440 Identities=25% Similarity=0.304 Sum_probs=347.4
Q ss_pred CCCCcccHHHHHHHHHHcC---CCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchh
Q 009090 37 VDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (544)
Q Consensus 37 ~~~~~~tl~~~l~~~a~~~---p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~ 113 (544)
.|....|+++.|.++++++ |+++|+++. ..+ +++||+||.+++.++|++|+++|+++||+|+++++|+++
T Consensus 12 ~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~-----~~~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e 84 (541)
T d1lcia_ 12 YPLEDGTAGEQLHKAMKRYALVPGTIAFTDA-----HIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ 84 (541)
T ss_dssp SCCCSSCHHHHHHHHHHHHHTSTTCEEEEET-----TTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC-----CCC--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH
Confidence 3344679999999999888 555566532 222 679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhC
Q 009090 114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (544)
Q Consensus 114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (544)
+++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+.+... ..+....++..+.....
T Consensus 85 ~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 155 (541)
T d1lcia_ 85 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY-------- 155 (541)
T ss_dssp THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB--------
T ss_pred HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCccc--------
Confidence 999999999999999999999999999999999999999999988777655443 34556666665543211
Q ss_pred CceeeeHHHHHhccc------ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCc
Q 009090 194 GIKPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (544)
Q Consensus 194 ~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d 267 (544)
....++..+..... ....+.....++++++++|||||||.||+|++||++++.........+. .....+++
T Consensus 156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~~~~ 232 (541)
T d1lcia_ 156 -QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDT 232 (541)
T ss_dssp -TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTC
T ss_pred -cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--cccccccc
Confidence 11223333332211 1112233346788999999999999999999999999877666544331 12467899
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHH
Q 009090 268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (544)
Q Consensus 268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (544)
++++++|++|..+....+..+..++.++.... +.......+..+++|.+..+|.++..+++....
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-------------- 298 (541)
T d1lcia_ 233 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI-------------- 298 (541)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG--------------
T ss_pred cccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc--------------
Confidence 99999999999998888787777777777665 888999999999999999999998887642111
Q ss_pred HHHHHHHHHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCC-ceEEeeccccccCcee
Q 009090 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTT 425 (544)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~i~~~YG~tE~~~~~~ 425 (544)
... ..+++|.+++||+++++...+++.+.++. .+++.||+||+++.++
T Consensus 299 -----------------------~~~--------~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 347 (541)
T d1lcia_ 299 -----------------------DKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 347 (541)
T ss_dssp -----------------------GGS--------CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSE
T ss_pred -----------------------ccc--------ccccceEEEecccccccccccccccccCCceeeecCCccccCceEE
Confidence 111 12489999999999999999999999864 6899999999999888
Q ss_pred eccCCCccccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEc
Q 009090 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504 (544)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~ 504 (544)
....... ..+++|+|+|+++++|+| ++. ..+++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||+|+++
T Consensus 348 ~~~~~~~-~~~svG~p~~~~~~~i~d-~d~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~ 424 (541)
T d1lcia_ 348 ITPEGDD-KPGAVGKVVPFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 424 (541)
T ss_dssp ECCCC----CCCCBEECTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred ecCcccC-CCCccccccCCCEEEEEE-CCC-CcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEc
Confidence 8765544 348999999999999998 433 3566778999999999999999999999888877 68999999999999
Q ss_pred cCCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 505 ~~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
+||.+++.||.+|+|++ +|++|+|.+||++|.+||+|+|
T Consensus 425 ~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~ 463 (541)
T d1lcia_ 425 EDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 463 (541)
T ss_dssp TTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEE
T ss_pred CCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 99999999999999998 7999999999999999999975
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.9e-57 Score=476.45 Aligned_cols=409 Identities=20% Similarity=0.246 Sum_probs=339.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHH
Q 009090 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (544)
Q Consensus 39 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~ 118 (544)
++..||.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+.++++++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~ 90 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence 37789999999999999999999874 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceee
Q 009090 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (544)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (544)
|||+++|++++|+++.++.+++.++++.++++++|++......+...... . ........
T Consensus 91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~-~~~~~~~~---------------- 149 (514)
T d1amua_ 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----G-QVEIFEED---------------- 149 (514)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----S-EEEECCCS----------------
T ss_pred HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----c-cccccccc----------------
Confidence 99999999999999999999999999999999999998877665433211 1 11111111
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHH
Q 009090 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (544)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (544)
............+..++++++++|||||||.||+|.+||.++...+......+ ....++++++..|++|.
T Consensus 150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 219 (514)
T d1amua_ 150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 219 (514)
T ss_dssp -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred -----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccc
Confidence 00111112223445788999999999999999999999999999998887776 78999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
.++...+.++..|+++++... +...+.+.+..+.++.+..+|..+....
T Consensus 220 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 272 (514)
T d1amua_ 220 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------------------------- 272 (514)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC---------------------------
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc---------------------------
Confidence 999888888999999988764 6777888999999999999887643310
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCC--c
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--M 432 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~--~ 432 (544)
...++++|.++++|+++++++.+++.+ +..+++.||+||++.+++...... .
T Consensus 273 ------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~ 326 (514)
T d1amua_ 273 ------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 326 (514)
T ss_dssp ------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred ------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecccccccc
Confidence 011248999999999999999888766 778999999999999887665544 2
Q ss_pred cccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-------cCCccccCceEEEcc
Q 009090 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-------IDGWFHTGDIGQILP 505 (544)
Q Consensus 433 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-------~~g~~~TGDlg~~~~ 505 (544)
....+.|.+.++.++.+.+ ++. .+++.|+.|||+|+||.++.||++++..+.+.| .+|||+|||+|++|+
T Consensus 327 ~~~~~~~~~~~~~~v~~~d-~~~--~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~ 403 (514)
T d1amua_ 327 GHSVPIGAPIQNTQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 403 (514)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CcccccccceeeeeEeeec-ccc--eecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECC
Confidence 2335778899999999988 443 455567899999999999999999999988876 267999999999999
Q ss_pred CCcEEEEeeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 506 ~g~l~~~GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||+|+++||.+|+|++ +|++|+|.+||++|.+||+|+|
T Consensus 404 ~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~ 441 (514)
T d1amua_ 404 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISE 441 (514)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEE
T ss_pred CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 9999999999999997 7999999999999999999964
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=8.2e-56 Score=466.27 Aligned_cols=426 Identities=19% Similarity=0.174 Sum_probs=346.9
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
..|+.++|+++|+++||++|+++. + +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA 94 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC----C-----EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 369999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhc----ccccccccccEEEEecCCchHHHHHHhhCCce
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS----PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (544)
|+++|++++|++|.++.+++.++|+.++++++++++........ ............+...... .
T Consensus 95 ~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 162 (536)
T d1mdba_ 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------E 162 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------T
T ss_pred HHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------c
Confidence 99999999999999999999999999999999998754321111 0111111122222211111 1
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
..+++++. ..+.......++++++++|||||||.||+|++||.++...+......+ .+.++|++++..|++
T Consensus 163 ~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~ 233 (536)
T d1mdba_ 163 FLPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (536)
T ss_dssp SEEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ccchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----ccccccccccccccc
Confidence 11222211 223334456789999999999999999999999999999999888777 899999999999999
Q ss_pred HHHHHHH-HH-HHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 009090 277 HILDRVI-EE-YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (544)
Q Consensus 277 ~~~g~~~-~~-~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (544)
|.+++.. .+ ..+..|.+++..+. ++..+...+++++++.+..+|..+..+........
T Consensus 234 ~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 294 (536)
T d1mdba_ 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (536)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred cccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc-------------------
Confidence 9999864 33 34555677776655 89999999999999999999998887655322211
Q ss_pred HHHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCcc
Q 009090 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (544)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~ 433 (544)
...+++|.+++||+++++...+++.+.++......|+.+|.+..+.........
T Consensus 295 --------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (536)
T d1mdba_ 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (536)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------cccCcceeEEEeccccccccccchhhccCceeeecccccccccccccccccccc
Confidence 112489999999999999999999999999999999999988776666555555
Q ss_pred ccCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEecCCccccccCChhhhhhcc-cCCccccCceEEEccCCcEEEE
Q 009090 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (544)
Q Consensus 434 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~~~v~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~g~l~~~ 512 (544)
..+++|.|+++....++..+++ .+++.++.|||+++|+.++.||+++++.+...+ .+|||+|||+|++++||+|++.
T Consensus 349 ~~~~~g~p~~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~ 426 (536)
T d1mdba_ 349 IVNTQGKPMSPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVE 426 (536)
T ss_dssp HHHCCCEESSTTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred ccCCcccCCCCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecC
Confidence 5578999987666666652333 556677999999999999999999999888887 7799999999999999999999
Q ss_pred eeccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 513 GR~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
||.+|+|++ +|++|+|.+||++|.+||+|+|
T Consensus 427 GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~ 457 (536)
T d1mdba_ 427 GRAKDQINR-GGEKVAAEEVENHLLAHPAVHD 457 (536)
T ss_dssp EEGGGCEEC-SSCEECHHHHHHHHTTSTTEEE
T ss_pred CCcceEEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 999999997 7999999999999999999974
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=9.3e-53 Score=438.64 Aligned_cols=422 Identities=20% Similarity=0.226 Sum_probs=335.2
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccCCCCCCceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCchhHHHHHHH
Q 009090 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (544)
Q Consensus 41 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gl~~gd~V~l~~~n~~~~~~~~lA 120 (544)
++|+.++|+++|+++||++|+++. ++. +++||+||.+++.++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 579999999999999999999876 332 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHHhcCceEEEEccchhhHhhcccccccccccEEEEecCCchHHHHHHhhCCceeeeH
Q 009090 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (544)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (544)
|+++|++++|++|.++++++.++++.++++++|++......... ... .....++. +
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~--~~~-~~~~~~i~---------------------~ 129 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI--FQS-GSGARIIF---------------------L 129 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHH--HHT-TCCCEEEE---------------------H
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHH--hhh-cccccccc---------------------c
Confidence 99999999999999999999999999999999998764322111 111 11222222 2
Q ss_pred HHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChH
Q 009090 201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (544)
Q Consensus 201 ~~l~~~~~----~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (544)
.++..... ..+.......++++++++|||||||.||+|.++|.++...+......+ .......+.++..+|++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 22222111 122333456788999999999999999999999999998887765544 12446678999999998
Q ss_pred HHHHHHH-HHHHHHcCcEEEEecC-ChhhHHHHhhhhCCcEEEeccHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 009090 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (544)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
|..+... .+.+...++.+++.+. ++..+...+..++++....+|..+..+.........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 267 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS------------------- 267 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-------------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccc-------------------
Confidence 8887775 5556677777777665 999999999999999999999998877553322111
Q ss_pred HHhcccCcCCcchHHHHHhHHHHHHHhCCcccEEEEcCCCCCHHHHHHHHHhcCCceEEeeccccccCceeeccCCCccc
Q 009090 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (544)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~ 434 (544)
....++||.+++||++++++...++...++..+.+.||++|++..+..........
T Consensus 268 ------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~ 323 (503)
T d3cw9a1 268 ------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE 323 (503)
T ss_dssp ------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred ------------------------cccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 11124899999999999999999999999999999999999988777665544332
Q ss_pred cCccCcCccCceEEEeecCCCCCCCCCCCCCCeEEEec-CCccccccCChhhhhhcccCCccccCceEEEccCCcEEEEe
Q 009090 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513 (544)
Q Consensus 435 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~g~~Gei~v~~-~~v~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~g~l~~~G 513 (544)
.+.+.+.+.....+. ......++.|+.|++.+.+ +....+|+++++.+.+.|.+|||+|||+|++++||.|+++|
T Consensus 324 -~~~~~~~~~~~~~~~---~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G 399 (503)
T d3cw9a1 324 -MAPGFFSEVRIVRIG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG 399 (503)
T ss_dssp -EBCCTTCCEEEECTT---SCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred -ccccccccceeeeee---cccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence 333333333333322 2333455677889887776 55567899999999999999999999999999999999999
Q ss_pred eccceeecCCCceechHhHHHHhhcCCCccC
Q 009090 514 RKKNLIKISQGEYVALEYLENVYCVAPIIED 544 (544)
Q Consensus 514 R~~d~i~~~~g~~v~~~~iE~~l~~~~~V~~ 544 (544)
|.||+|++ +|++|+|.+||++|.+||+|+|
T Consensus 400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~ 429 (503)
T d3cw9a1 400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTE 429 (503)
T ss_dssp ESSCCEEE-TTEEECHHHHHHHHTTSTTEEE
T ss_pred CcCCeEEE-CCEEECHHHHHHHHHhCCCccE
Confidence 99999998 7999999999999999999974
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=81.48 E-value=2.2 Score=41.10 Aligned_cols=89 Identities=10% Similarity=0.020 Sum_probs=70.7
Q ss_pred eeeccHhHHHHHhhhhhhhhcccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--ChhhHHHHhhhhCCcE
Q 009090 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (544)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (544)
..+|+..+...+..+...+... ++.++|++...++..-.+ ....++++..|+..+.... +...+...++..++++
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~--Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~ 122 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred eEeeHHHHHHHHHHHHHHHHHc--CcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceE
Confidence 4689999999998888877543 688999999888764221 3356677888998888765 7899999999999999
Q ss_pred EEeccHHHHHHHHH
Q 009090 316 LAGVPRVFEKIHEG 329 (544)
Q Consensus 316 l~~~p~~~~~l~~~ 329 (544)
++.....+..+.+.
T Consensus 123 vi~~~~~~~~~~~~ 136 (541)
T d1lcia_ 123 VFVSKKGLQKILNV 136 (541)
T ss_dssp EEECGGGHHHHHHH
T ss_pred Eeeeccccccchhc
Confidence 99999887776553
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