Citrus Sinensis ID: 009129
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M390 | 570 | Peptide transporter PTR1 | yes | no | 0.987 | 0.940 | 0.767 | 0.0 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.983 | 0.936 | 0.767 | 0.0 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.976 | 0.905 | 0.621 | 0.0 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.965 | 0.888 | 0.565 | 1e-179 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.904 | 0.900 | 0.525 | 1e-160 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.983 | 0.895 | 0.477 | 1e-136 | |
| Q8VZR7 | 583 | Probable peptide/nitrate | no | no | 0.952 | 0.886 | 0.421 | 1e-125 | |
| Q3E9B5 | 609 | Putative peptide/nitrate | no | no | 0.930 | 0.829 | 0.423 | 1e-124 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.970 | 0.894 | 0.427 | 1e-122 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.952 | 0.882 | 0.435 | 1e-121 |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/538 (76%), Positives = 474/538 (88%), Gaps = 2/538 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGM TNLVNYL+ +LNQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y
Sbjct: 33 FILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKP-SCDKDACHPTGAQTAVTFVALYLIALG 126
+GR+WTIA+F IY GMTLLTL+ASV GLKP +C+ D CHP +QTAV FVALY+IALG
Sbjct: 93 LGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALG 152
Query: 127 TGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGW 186
TGGIKPCVSSFGADQFDE D+ E+ KKSSFFNWFY SIN+GAL+A++VLVWIQMNVGWGW
Sbjct: 153 TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212
Query: 187 GFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE 246
GFG+P VAM IAV FFF GSR YR+Q+PGGSPLTRI QVIVA+FRK +V VP DKSLL+E
Sbjct: 213 GFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFE 272
Query: 247 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK-GSADPWRLCTVTQVEELKAIIRL 305
TAD+E NI+GSRKL T KFFDKAAVE+Q+D +K G +PWRLC+VTQVEELK+II L
Sbjct: 273 TADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITL 332
Query: 306 LPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDI 365
LPVWA+GIVFATVYSQMSTMFVLQGNTMDQHMG NF+IPSASLSLFDT+SV+FW P+YD
Sbjct: 333 LPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQ 392
Query: 366 VIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425
I+P ARK T +ERGFTQLQRMGIGL++SIF+M+ AG+LEVVRL+ VK +N YD + I M
Sbjct: 393 FIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHM 452
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTI 485
+IFWQ+PQY ++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLST+LVT+
Sbjct: 453 SIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTV 512
Query: 486 VTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
V K+T KNGK GWIPDNLNRGHLDYF++LL LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 513 VMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVGRAH 570
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/537 (76%), Positives = 468/537 (87%), Gaps = 3/537 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I G ECCERLAYYGMSTNL+NYL+KQ+N NV+AS +V+NWSGTCY TPLIGAF+AD+Y
Sbjct: 34 FILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAY 93
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GR+WTIASF +IY GMTLLT++ASV GL P+C + CH T QTA+TF+ALYLIALGT
Sbjct: 94 LGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGT 153
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFD+TD+ E+E KSSFFNWFY IN+GA++ASSVLVWIQMNVGWGWG
Sbjct: 154 GGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWG 213
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
G+P VAMAIAVVFFF+GS YR+QKPGGSPLTR++QVIVAS RKS V +P D+SLLYE
Sbjct: 214 LGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYEN 273
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSA--DPWRLCTVTQVEELKAIIRL 305
D E +I GSRKLE T FFDKAAVET++D KG+A W+LCTVTQVEELKA+IRL
Sbjct: 274 QDAESSIIGSRKLEHTKILTFFDKAAVETESDN-KGAAKSSSWKLCTVTQVEELKALIRL 332
Query: 306 LPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDI 365
LP+WA+GIVFA+VYSQM T+FVLQGNT+DQHMGPNFKIPSASLSLFDTLSV+FWAP+YD
Sbjct: 333 LPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDK 392
Query: 366 VIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425
+IVPFARK TGHERGFTQLQR+GIGL+ISIFSMV+AGILEV RLN V+ +N Y+ ETIPM
Sbjct: 393 LIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPM 452
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTI 485
TIFWQVPQYF+VGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT +A GNYLST LVT+
Sbjct: 453 TIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTL 512
Query: 486 VTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRA 542
VTKVT G+ GWI NLN GHLDYF+WLL LS LNFLVYLWIAKW+TYKK TG A
Sbjct: 513 VTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/539 (62%), Positives = 419/539 (77%), Gaps = 9/539 (1%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I GNECCERLAYYG++ NL+ YL +L+QGNV+A+ NVT W GTCY+TPLIGA LAD+
Sbjct: 49 PFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADA 108
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CDKDAC-HPTGAQTAVTFVALYLIA 124
Y GR+WTIA FS IY +GM+ LTL+ASV LKP+ C D C T AQ A+ F LYLIA
Sbjct: 109 YWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIA 168
Query: 125 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW 184
LGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY SINIGALV+SS+LVWIQ N GW
Sbjct: 169 LGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGW 228
Query: 185 GWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL 244
G GFGIP V M +A+ FF G+ LYR QKPGGSP+TRI QV+VASFRKS+V VP D +LL
Sbjct: 229 GLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLL 288
Query: 245 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGS-ADPWRLCTVTQVEELKAII 303
YET D+ I GSRK+E T ++ DKAAV ++ + G ++ WRLCTVTQVEELK +I
Sbjct: 289 YETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILI 348
Query: 304 RLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIY 363
R+ P+WASGI+F+ VY+QMSTMFV QG M+ +G +F++P A+L FDT SVI W P+Y
Sbjct: 349 RMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLY 407
Query: 364 DIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIET- 422
D IVP ARK TG ++GFT++QRMGIGL +S+ M AA I+E++RL++ N+ +E+
Sbjct: 408 DRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMA--NDLGLVESG 465
Query: 423 --IPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLST 480
+P+++ WQ+PQYFI+G AEVF FIGQLEFFYDQ+PDAMRSLCSAL+L T A+GNYLS+
Sbjct: 466 APVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSS 525
Query: 481 LLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKAT 539
L++T+VT TT+NG+ GWI DNLN GHLDYF+WLL LS++N VY + A + KKA+
Sbjct: 526 LILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKAS 584
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 627 bits (1618), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/538 (56%), Positives = 401/538 (74%), Gaps = 14/538 (2%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I GNECCERLAYYG++ NL+ Y +L++ NV+A+++V W GTCYITPLIGA +ADS
Sbjct: 60 PFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADS 119
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA----CHP-TGAQTAVTFVALY 121
Y GR+WTIASFS IY +GM LLTL+AS+ LKP+ C P T Q AV F LY
Sbjct: 120 YWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLY 179
Query: 122 LIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181
LIALGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY SINIG+ ++S++LVW+Q N
Sbjct: 180 LIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQEN 239
Query: 182 VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADK 241
VGWG GF IP V M +++ FF G+ LYR QKPGGSP+TR+ QV+VA++RK + +P D
Sbjct: 240 VGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDI 299
Query: 242 SLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGS-ADPWRLCTVTQVEELK 300
S LYET ++ I GSRK++ T +KF DKAAV ++ + G+ ++PW+LCTVTQVEE+K
Sbjct: 300 SFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVK 359
Query: 301 AIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWA 360
+IR+ P+WASGIV++ +YSQ+ST+FV QG +M++ + +F+IP AS +FDTL V+
Sbjct: 360 TLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIR-SFEIPPASFGVFDTLIVLISI 418
Query: 361 PIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDI 420
PIYD +VPF R+ TG +G T LQRMGIGL +S+ S+ AA I+E VRL + +
Sbjct: 419 PIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQ------- 471
Query: 421 ETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLST 480
+ + M+IFWQ+PQY ++G AEVF FIG++EFFYD++PDAMRS+CSAL+L AVG+YLS+
Sbjct: 472 DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSS 531
Query: 481 LLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 538
L++T+V T GK GW+PD+LN+GHLDYF+WLL L ++N VY I T KKA
Sbjct: 532 LILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTKKKA 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 564 bits (1453), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/535 (52%), Positives = 371/535 (69%), Gaps = 44/535 (8%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I NECCERLAYYG++ NL+ Y +L++ NV+A+ +V W GTCYITPLIGA +AD+
Sbjct: 50 PFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADA 109
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CDKDACHP-TGAQTAVTFVALYLIA 124
Y GR+WTIA FS IY GM LTL+ASV GLKP+ C C P T Q+ V F LYLIA
Sbjct: 110 YWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIA 169
Query: 125 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW 184
LGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY +INIGA V+S+VLVWIQ N GW
Sbjct: 170 LGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGW 229
Query: 185 GWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL 244
GF IP V M +A + FF G+ LYR QKP GSP+T + QV+VA++RKSN+ VP D
Sbjct: 230 ELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDS--- 286
Query: 245 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR 304
TD + +PW+LCTVTQVEE+K ++R
Sbjct: 287 ---------------------------------TDEGDANTNPWKLCTVTQVEEVKILLR 313
Query: 305 LLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYD 364
L+P+WASGI+F+ ++SQ+ T+FV QG M + +G F+IP A+L +FDT SV+ PIYD
Sbjct: 314 LVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIG-LFEIPPATLGMFDTASVLISVPIYD 372
Query: 365 IVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDI-ETI 423
VIVP R+ TG +GFT+LQRMGIGL +S+ S+ A I+E VRL + + + + + +
Sbjct: 373 RVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIV 432
Query: 424 PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV 483
P+ IFWQ+PQYF++G A VF F+G++EFFY+Q+PD+MRSLCSA +L T +GNYLS+L++
Sbjct: 433 PLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLII 492
Query: 484 TIVTKVTTKNGKLGWIP-DNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK 537
T+V ++ GK WIP DN+N GHLDYF+WLL L +N V+++ + +T+ K
Sbjct: 493 TLVAYLS---GKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTHMK 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/542 (47%), Positives = 357/542 (65%), Gaps = 8/542 (1%)
Query: 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAF 62
L + P I NE CE+LA G N+++YL QL+ A+N +TN++GT +TPL+GAF
Sbjct: 27 LITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAF 86
Query: 63 LADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CD-KDACH-PTGAQTAVTFVA 119
+ADS+ GRFWTI SIIY +GMTLLT++A + L+P C ++ C AQ ++ +VA
Sbjct: 87 IADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVA 146
Query: 120 LYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179
L L ALG+GGI+PCV +FGADQFDE+D + K ++FNW+Y + L+A +VLVWIQ
Sbjct: 147 LLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQ 206
Query: 180 MNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 239
NVGWG G GIP VAM ++V+ F G +LYR P GSP TR++QV VA+FRK + + +
Sbjct: 207 DNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVS 266
Query: 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADP--WRLCTVTQVE 297
D SLLY + + I KL T F DKAA+ T+ D +K P WRL TV +VE
Sbjct: 267 DPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVE 326
Query: 298 ELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVI 357
ELK++IR+ P+ ASGI+ T Y+Q T + Q TM++H+ +F+IP+ S+S+F T++++
Sbjct: 327 ELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAML 386
Query: 358 FWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNY 417
YD V V ARK TG ERG T L RMGIG +ISI + + AG +EV R ++ +
Sbjct: 387 TTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGL 446
Query: 418 YDIE--TIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475
D +P++ W +PQY + G AE F IG LEFFYDQAP++MRS +AL +++G
Sbjct: 447 LDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIG 506
Query: 476 NYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534
NY+STLLVT+V K + K W+PD NLNRG L+YFYWL+T+L +N + YLW AK +T
Sbjct: 507 NYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYT 566
Query: 535 YK 536
YK
Sbjct: 567 YK 568
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/529 (42%), Positives = 346/529 (65%), Gaps = 12/529 (2%)
Query: 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR 70
G E ER+A+YG+++NLVNYL K+L++ +++ NV NWSG +ITP+ GA++ADSY+GR
Sbjct: 36 GYEAFERMAFYGIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGR 95
Query: 71 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGG 129
FWT + S+IY LGM LLT+ +V L+P+C+ C+ + Q +++LY IA+G GG
Sbjct: 96 FWTFTASSLIYVLGMILLTMAVTVKSLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGG 155
Query: 130 IKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFG 189
KP +S+FGADQFD E+++K SFFNW+ S +GAL A+ LV+IQ N+GWG G+G
Sbjct: 156 TKPNISTFGADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYG 215
Query: 190 IPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETA 248
IP V + +++V F+ G+ YR + L + ++QV +A+F+ + P D LYE
Sbjct: 216 IPTVGLLVSLVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELD 275
Query: 249 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV 308
G ++ T F+F DKAA++T + RV CTVT+VE K ++ L+ +
Sbjct: 276 SHYYKSNGKHQVHHTPVFRFLDKAAIKTSS-RVP--------CTVTKVEVAKRVLGLIFI 326
Query: 309 WASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIV 368
W ++ +T+++Q++T+FV QG T+D+ +G NF+IP+ASL F TLS++ P+YD V
Sbjct: 327 WLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFV 386
Query: 369 PFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYD-IETIPMTI 427
PF RK TG+ RG T LQR+G+G I I ++ A +EV R+ ++K + + +PM+I
Sbjct: 387 PFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSI 446
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FW +PQY ++G +VF IG LEFFYDQ+P+ M+SL + + + +GN+L++ LVT++
Sbjct: 447 FWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMID 506
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536
K+T+K G WI +NLN LDY+Y L ++S++N +++W A + YK
Sbjct: 507 KITSKGGGKSWIGNNLNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYK 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/527 (42%), Positives = 347/527 (65%), Gaps = 22/527 (4%)
Query: 12 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF 71
N+ LA++G+ NLV +L + + QGN A+NNV+ W+GT Y+ L+GAFL+DSY GR+
Sbjct: 72 NQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRY 131
Query: 72 WTIASFSIIYCLGMTLLTLTASVSGLKP-SC---DKDACHPTGAQTAVTFVALYLIALGT 127
T F +I+ +G+ LL+ + +KP C D + P+ A+ ++++YL+A G
Sbjct: 132 LTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGY 191
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GG +P +++FGADQ D+ ++ K++FF++FY ++N+GAL ++++LV+ + W G
Sbjct: 192 GGHQPTLATFGADQLDD----DKNSKAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEG 247
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
F + + +A+V F + +R YR KP G+PL R+ QV VA+ RK +VV P D LYE
Sbjct: 248 FLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSVVRPGDPHELYEL 307
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
E I+GSRK+ ++KF F D+AAV T+ DR ++ WRLC+VTQVEE K +++LLP
Sbjct: 308 EGPESAIKGSRKIFHSTKFLFLDRAAVITENDRNGTRSNAWRLCSVTQVEEAKCVMKLLP 367
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
+W I+++ +++QM+++FV QG+ M+ ++G F IP+AS+S+FD SV IY +I
Sbjct: 368 IWLCTIIYSVIFTQMASLFVEQGDVMNAYVG-KFHIPAASMSVFDIFSVFVSTGIYRHII 426
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
P+ R T+L RMGIGL+I I +MVAAG+ E+ RL V + +TI
Sbjct: 427 FPYVRP--------TELMRMGIGLIIGIMAMVAAGLTEIQRLKRVVPGQ----KESELTI 474
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
WQ+PQY +VG +EVF ++GQLEFF QAPD +++L S+L + ++A+GNY+S+L+V IV
Sbjct: 475 LWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMALGNYVSSLMVNIVM 534
Query: 488 KVTTK-NGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWF 533
+T + GWIP+NLN GH+D FY+L+ L+ ++F+VYL AKW+
Sbjct: 535 AITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKWY 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/543 (42%), Positives = 352/543 (64%), Gaps = 16/543 (2%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
LI N+ LA++G+ NLV +L + + Q N A+NNV+ W+GT YI L+GAFL+DSY
Sbjct: 37 LILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSY 96
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS---CDKDACHPTGA-QTAVTFVALYLI 123
GR+ T A F + G+ +L+L+ L+PS + C P +T + ++++YLI
Sbjct: 97 WGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLI 156
Query: 124 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183
ALG GG +P +++FGADQFD D E K +FF++FYL++N+G+L +++VL + +
Sbjct: 157 ALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGE 216
Query: 184 WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243
W GF A + +V F G+ YR P SP +R QV+VA+ RK+ + V ++
Sbjct: 217 WPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELN 276
Query: 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK----GSA-DPWRLCTVTQVEE 298
LY D E G +K+ T F+F D+AA+ T D + GS DPWRLC+VTQVEE
Sbjct: 277 LY---DSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWRLCSVTQVEE 333
Query: 299 LKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIF 358
+K ++RLLP+W I+++ V++QM+++FV+QG M ++ NF+IP++S+S FD LSV F
Sbjct: 334 VKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNI-KNFRIPASSMSSFDILSVAF 392
Query: 359 WAPIYDIVIVPFARKLTGHER--GFTQLQRMGIGLLISIFSMVAAGILEVVRL-NIVKRN 415
+ Y + P +L ER G T+LQRMGIGL+I+I +M++AGI+E+ RL N +
Sbjct: 393 FIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPES 452
Query: 416 NYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475
+ ++IFWQVPQY ++G +EVF ++GQLEFF QAP ++S SAL + ++++G
Sbjct: 453 ATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLG 512
Query: 476 NYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535
NY+S+LLV+IV K++T + GWIP+NLN+GHL+ FY+LL L+ +F+VYL AKW+ Y
Sbjct: 513 NYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKY 572
Query: 536 KKA 538
K+
Sbjct: 573 IKS 575
|
Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/531 (43%), Positives = 350/531 (65%), Gaps = 14/531 (2%)
Query: 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW 72
E ER+AYYG+S+NLV Y+ +L+QG V +SNNVTNW GT ++TP++GA++AD++ GR+
Sbjct: 41 EVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYI 100
Query: 73 TIASFSIIYCLGMTLLTLTASVSGLKP----SCDKDACHPTGA-QTAVTFVALYLIALGT 127
T S IY LGM LLTL+ S+ GLKP + + + C Q AV F ALY +A+GT
Sbjct: 101 TFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGT 160
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GG KP +S+ GADQFDE D ++ K SFFNW+ SI G A++VLV++Q NVGW G
Sbjct: 161 GGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIG 220
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
+G+ + +A ++ F G+RLYR + P GSP T++ +VIVAS RK+ + +D + YE
Sbjct: 221 YGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYEL 280
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
E + + + STS +F ++A+++T GS WRLCT+T+VEE K ++++LP
Sbjct: 281 PPMEYASKRAFPIHSTSSLRFLNRASLKT------GSTHKWRLCTITEVEETKQMLKMLP 334
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
V V + + +Q+ T+F+ QG T+D+ + NF IP ASL F T S++ IYD V
Sbjct: 335 VLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVF 394
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRN--NYYDIETIPM 425
V F RKLTG+ RG T LQRMGIG+++ I M+ A I E RL + + + IP+
Sbjct: 395 VKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPL 454
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTI 485
+IF +PQY ++G A+ F I +LEFFYDQAP++M+SL ++ + T++AVG ++S++L++
Sbjct: 455 SIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSS 514
Query: 486 VTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536
V+++T K G+ GWI +NLN LD +Y +L++LNF+++L + +++ Y+
Sbjct: 515 VSQITKKQGR-GWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYR 564
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| 255586505 | 1121 | peptide transporter, putative [Ricinus c | 0.983 | 0.476 | 0.850 | 0.0 | |
| 224140377 | 569 | predicted protein [Populus trichocarpa] | 0.983 | 0.938 | 0.855 | 0.0 | |
| 359481683 | 1120 | PREDICTED: peptide transporter PTR1-like | 0.981 | 0.475 | 0.822 | 0.0 | |
| 224090929 | 567 | predicted protein [Populus trichocarpa] | 0.987 | 0.945 | 0.847 | 0.0 | |
| 147802380 | 568 | hypothetical protein VITISV_034788 [Viti | 0.983 | 0.940 | 0.822 | 0.0 | |
| 449511100 | 569 | PREDICTED: LOW QUALITY PROTEIN: peptide | 0.983 | 0.938 | 0.798 | 0.0 | |
| 449440283 | 569 | PREDICTED: peptide transporter PTR5-like | 0.983 | 0.938 | 0.796 | 0.0 | |
| 297820152 | 570 | proton-dependent oligopeptide transport | 0.987 | 0.940 | 0.767 | 0.0 | |
| 15232435 | 570 | peptide transporter PTR1 [Arabidopsis th | 0.987 | 0.940 | 0.767 | 0.0 | |
| 357468661 | 577 | Peptide transporter PTR1 [Medicago trunc | 0.979 | 0.922 | 0.778 | 0.0 |
| >gi|255586505|ref|XP_002533893.1| peptide transporter, putative [Ricinus communis] gi|223526157|gb|EEF28493.1| peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/536 (85%), Positives = 497/536 (92%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYLQ +LNQGNV ASNNVTNWSGTCYITPLIGAFLAD+Y
Sbjct: 586 FILGNECCERLAYYGMSTNLVNYLQDRLNQGNVAASNNVTNWSGTCYITPLIGAFLADAY 645
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
GR+WTIASF +IY GM LLT++AS GLKP CDK +CHPT QTAVTF ALYLIALGT
Sbjct: 646 FGRYWTIASFVMIYIFGMALLTISASAPGLKPFCDKHSCHPTKTQTAVTFAALYLIALGT 705
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDETDD E++KKSSFFNWFY SINIGAL+ASSVLVWIQMNVGWGWG
Sbjct: 706 GGIKPCVSSFGADQFDETDDDEKKKKSSFFNWFYFSINIGALIASSVLVWIQMNVGWGWG 765
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+PAVAMAIAVVFFF+GS+LYR+Q+PGGSP+TR++QVIVASFRK NV VP DKSLLYET
Sbjct: 766 FGVPAVAMAIAVVFFFAGSKLYRLQRPGGSPITRLLQVIVASFRKLNVQVPDDKSLLYET 825
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
DEE IQGSRKLE T K KFFDKAAVETQTD VK S +PWRLCTVTQVEELKAIIRLLP
Sbjct: 826 TDEESQIQGSRKLEHTDKLKFFDKAAVETQTDSVKDSTNPWRLCTVTQVEELKAIIRLLP 885
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWASGIVFATVY QMSTMFVLQGNTM+QHMGP+FKIPSASLSLFDTLSVIFW P+YD +I
Sbjct: 886 VWASGIVFATVYGQMSTMFVLQGNTMNQHMGPHFKIPSASLSLFDTLSVIFWTPVYDRLI 945
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VP+ARK TG+ERGFTQLQRMGIGL+ISIFSM+ AG+LEVVRLN V+RNNYYD+E IPM+I
Sbjct: 946 VPYARKYTGNERGFTQLQRMGIGLVISIFSMITAGVLEVVRLNYVQRNNYYDLEYIPMSI 1005
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLST+LVT+VT
Sbjct: 1006 FWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVT 1065
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
KVTT++GKLGWIPDNLNRGHLDYFYWLL ILS+LNF VYLWIAKW+TYKKATGRA+
Sbjct: 1066 KVTTRHGKLGWIPDNLNRGHLDYFYWLLAILSLLNFFVYLWIAKWYTYKKATGRAH 1121
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140377|ref|XP_002323559.1| predicted protein [Populus trichocarpa] gi|222868189|gb|EEF05320.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/534 (85%), Positives = 502/534 (94%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYL +LNQGNV A+NNVTNWSGTCY+TPLIGAFLADSY
Sbjct: 32 FILGNECCERLAYYGMSTNLVNYLGDRLNQGNVAAANNVTNWSGTCYVTPLIGAFLADSY 91
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GR+WTIASF IIY +GMTLLTL+ASV+GLKPSCDKD+CHPT QTA FVALY+IALGT
Sbjct: 92 LGRYWTIASFVIIYIIGMTLLTLSASVTGLKPSCDKDSCHPTTGQTAACFVALYMIALGT 151
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDETD+ ER+KKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG
Sbjct: 152 GGIKPCVSSFGADQFDETDETERKKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 211
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+PAVAMA+AVVFFF GS+LYRIQKPGGSP+TRI+QVIVASFRKSNV VPADKSLLYET
Sbjct: 212 FGVPAVAMAVAVVFFFLGSKLYRIQKPGGSPITRIVQVIVASFRKSNVQVPADKSLLYET 271
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
A+EE IQGSRKLE T+KFKFFDKAAV+TQ D +KG PWRLCTVTQVEELK+IIRLLP
Sbjct: 272 AEEESQIQGSRKLEHTNKFKFFDKAAVKTQDDNIKGLTSPWRLCTVTQVEELKSIIRLLP 331
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWASGIVF+TVYSQM+TMFVLQGNTMDQHMGP+F+IPSASLSLFDTLSVIFWAP+YD +I
Sbjct: 332 VWASGIVFSTVYSQMNTMFVLQGNTMDQHMGPHFQIPSASLSLFDTLSVIFWAPVYDRII 391
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VP+ARK TGHERGFTQLQRMGIGL+ISI SM+ AGILEVVRLN V++NNYYD++ IPM+I
Sbjct: 392 VPYARKFTGHERGFTQLQRMGIGLVISIVSMITAGILEVVRLNFVQKNNYYDLKYIPMSI 451
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLSTLLVTIVT
Sbjct: 452 FWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTLLVTIVT 511
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541
K+TT+ GKLGWIPDN+NRGHLDYFYWLL ILS LNF++YLWI+KWFTYKKATG
Sbjct: 512 KITTRGGKLGWIPDNMNRGHLDYFYWLLAILSFLNFILYLWISKWFTYKKATGH 565
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481683|ref|XP_002274041.2| PREDICTED: peptide transporter PTR1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/534 (82%), Positives = 487/534 (91%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYLQ +LNQGNVTASNNVTNWSGTCYITPLIGAFLAD+Y
Sbjct: 585 FILGNECCERLAYYGMSTNLVNYLQIRLNQGNVTASNNVTNWSGTCYITPLIGAFLADAY 644
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
GRFW IA FSIIY GM LLT+TAS+ GL+PSCD + C PT Q+AV F+ALYLIALGT
Sbjct: 645 FGRFWIIAIFSIIYFCGMVLLTMTASIKGLRPSCDDNGCDPTKLQSAVCFIALYLIALGT 704
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFD D+ E++KKSSFFNWFYLSIN+GAL+ASSVLVWIQMNVGWGWG
Sbjct: 705 GGIKPCVSSFGADQFDVNDEAEKKKKSSFFNWFYLSINVGALIASSVLVWIQMNVGWGWG 764
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FGIPAVAMAIAVV FFSGSR+YR+QKPGGSPLTRI QV+VAS RK +V VP +KSLLYET
Sbjct: 765 FGIPAVAMAIAVVSFFSGSRMYRLQKPGGSPLTRICQVLVASTRKYHVKVPNNKSLLYET 824
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
D E NI+GS KLE T K +FFDKAAVE ++D VK S +PW+LCTVTQVEELK+I+RLLP
Sbjct: 825 KDAESNIKGSCKLEHTEKLRFFDKAAVEVESDHVKSSNNPWKLCTVTQVEELKSILRLLP 884
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWA+GI+F+TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAP+YD +I
Sbjct: 885 VWATGILFSTVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPVYDRII 944
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VPFARK TGHERGFTQLQRMGIGL+ISI SM+ AGILEV+RLN V+++NYYD+E IPM+I
Sbjct: 945 VPFARKFTGHERGFTQLQRMGIGLVISIISMIVAGILEVIRLNYVRKHNYYDLEYIPMSI 1004
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++GCAEVFTFIGQLEF+YDQAPDA RSLCSALSLTT A+GNYLSTLLVTIV
Sbjct: 1005 FWQVPQYFLIGCAEVFTFIGQLEFYYDQAPDATRSLCSALSLTTNALGNYLSTLLVTIVN 1064
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541
KVTT+NGK+GWIPDN+NRGHLDYFYWLL ILS+LNFLVYLWIAKW+TYKK TGR
Sbjct: 1065 KVTTRNGKMGWIPDNMNRGHLDYFYWLLAILSLLNFLVYLWIAKWYTYKKVTGR 1118
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090929|ref|XP_002309120.1| predicted protein [Populus trichocarpa] gi|222855096|gb|EEE92643.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/536 (84%), Positives = 492/536 (91%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYL+ +LNQGNV ASNNVTNWSGTCYITPLIGAFLADSY
Sbjct: 32 FILGNECCERLAYYGMSTNLVNYLEDRLNQGNVAASNNVTNWSGTCYITPLIGAFLADSY 91
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GR+WTIASF +IY +GMTLLTL+ASV GL+ SCDKD+CHPT QT FVALY IALGT
Sbjct: 92 LGRYWTIASFVVIYIIGMTLLTLSASVPGLESSCDKDSCHPTTGQTTAFFVALYFIALGT 151
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDETD+ ER+KKSSFFNWFYLSINIGAL+ASSVLVWIQMNVGWGWG
Sbjct: 152 GGIKPCVSSFGADQFDETDETERKKKSSFFNWFYLSINIGALIASSVLVWIQMNVGWGWG 211
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FGIPAVAMA+AVVFFF GS+LYRIQKPGGSP+TRI+QVIVASFRK +V VPADKSLLYET
Sbjct: 212 FGIPAVAMAVAVVFFFLGSKLYRIQKPGGSPITRIVQVIVASFRKYHVQVPADKSLLYET 271
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
A+EE IQGSRKLE T KFKFFDKAAVETQTD +K +PWRLCTVTQVEELK+I+RLLP
Sbjct: 272 AEEESQIQGSRKLEHTDKFKFFDKAAVETQTDNIKDLTNPWRLCTVTQVEELKSIVRLLP 331
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWASGIVFATVYSQMS MFVLQGNTMDQHMGP+FKIPSASLSLF LSVIFWAP+YD +I
Sbjct: 332 VWASGIVFATVYSQMSIMFVLQGNTMDQHMGPHFKIPSASLSLFGYLSVIFWAPVYDRII 391
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VP+ARK TGHERGFTQLQRMGIGL+ISI SM+ AG+LEVVRLN V+ NNYYD+E IPMTI
Sbjct: 392 VPYARKFTGHERGFTQLQRMGIGLVISIVSMIVAGVLEVVRLNFVRENNYYDLEYIPMTI 451
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLSTLLVTIVT
Sbjct: 452 FWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTLLVTIVT 511
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
KVTT+ GKLGWIPDNLNRGHLDYFYWLL ILS LNF YLWI+KW+ YKKAT R +
Sbjct: 512 KVTTRGGKLGWIPDNLNRGHLDYFYWLLAILSFLNFTAYLWISKWYAYKKATERPH 567
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802380|emb|CAN72572.1| hypothetical protein VITISV_034788 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/534 (82%), Positives = 487/534 (91%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYLQ +LNQGNVTASNNVTNWSGTCYITPLIGAFLAD+Y
Sbjct: 33 FILGNECCERLAYYGMSTNLVNYLQIRLNQGNVTASNNVTNWSGTCYITPLIGAFLADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
GRFW IA FSIIY GM LLT+TAS+ GL+PSCD + C PT Q+AV F+ALYLIALGT
Sbjct: 93 FGRFWIIAIFSIIYFCGMVLLTMTASIKGLRPSCDDNGCDPTKLQSAVCFIALYLIALGT 152
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFD D+ E++KKSSFFNWFYLSIN+GAL+ASSVLVWIQMNVGWGWG
Sbjct: 153 GGIKPCVSSFGADQFDVNDEAEKKKKSSFFNWFYLSINVGALIASSVLVWIQMNVGWGWG 212
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FGIPAVAMAIAVV FFSGSR+YR+QKPGGSPLTRI QV+VAS RK +V VP +KSLLYET
Sbjct: 213 FGIPAVAMAIAVVSFFSGSRMYRLQKPGGSPLTRICQVLVASTRKYHVKVPNNKSLLYET 272
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
D E NI+GS KLE T K +FFDKAAVE ++D VK S +PW+LCTVTQVEELK+I+RLLP
Sbjct: 273 KDAESNIKGSCKLEHTEKLRFFDKAAVEVESDHVKSSNNPWKLCTVTQVEELKSILRLLP 332
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWA+GI+F+TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAP+YD +I
Sbjct: 333 VWATGILFSTVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPVYDRII 392
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VPFARK TGHERGFTQLQRMGIGL+ISI SM+ AGILEV+RLN V+++NYYD+E IPM+I
Sbjct: 393 VPFARKFTGHERGFTQLQRMGIGLVISIISMIVAGILEVIRLNYVRKHNYYDLEYIPMSI 452
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++GCAEVFTFIGQLEF+YDQAPDA RSLCSALSLTT A+GNYLSTLLVTIV
Sbjct: 453 FWQVPQYFLIGCAEVFTFIGQLEFYYDQAPDATRSLCSALSLTTNALGNYLSTLLVTIVN 512
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541
KVTT+NGK+GWIPDN+NRGHLDYFYWLL ILS+LNFLVYLWIAKW+TYKK TGR
Sbjct: 513 KVTTRNGKMGWIPDNMNRGHLDYFYWLLAILSLLNFLVYLWIAKWYTYKKVTGR 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511100|ref|XP_004163862.1| PREDICTED: LOW QUALITY PROTEIN: peptide transporter PTR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/535 (79%), Positives = 478/535 (89%), Gaps = 1/535 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYLQ +LN NVTASN+VT+WSGTCY+TPLIGAFLAD+Y
Sbjct: 33 FILGNECCERLAYYGMSTNLVNYLQIRLNMDNVTASNSVTSWSGTCYLTPLIGAFLADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GRFWTIASFSIIY GMTLLTL AS+ GLKPSCD CHP+G QTA TFVALYLIALGT
Sbjct: 93 LGRFWTIASFSIIYAFGMTLLTLAASIPGLKPSCDSSGCHPSGGQTAATFVALYLIALGT 152
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDE D+ ER+KKSSFFNWFY SIN+GA++ASSVLVWIQMNVGWGWG
Sbjct: 153 GGIKPCVSSFGADQFDENDEVERKKKSSFFNWFYFSINVGAMIASSVLVWIQMNVGWGWG 212
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+PAVAMAIAVVFFFSGS LYR+QKP GSPLTRI+QVIVA+ RK V VP DKSLL+ET
Sbjct: 213 FGVPAVAMAIAVVFFFSGSSLYRLQKPAGSPLTRILQVIVAACRKHQVHVPEDKSLLHET 272
Query: 248 ADE-ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL 306
AD+ E I+GSRKLE T+ FKF DKA+VET+ DR+KG + WRLCTVTQVEELK+I+RLL
Sbjct: 273 ADDIESKIEGSRKLEHTNNFKFLDKASVETENDRIKGLPNEWRLCTVTQVEELKSIVRLL 332
Query: 307 PVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIV 366
PVWASGIVFA VYSQMSTMFVLQGNT+DQH+GP+FKIPSASLS+FDT+SV+FWAP+YD +
Sbjct: 333 PVWASGIVFAAVYSQMSTMFVLQGNTLDQHIGPSFKIPSASLSIFDTISVLFWAPVYDRL 392
Query: 367 IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT 426
IVP ARK T +ERGFTQLQRMGIGL IS+FSMV AG LEV RLN V+ NN YD+ETIPM+
Sbjct: 393 IVPIARKFTNNERGFTQLQRMGIGLAISVFSMVTAGALEVARLNYVRVNNLYDVETIPMS 452
Query: 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486
IFWQVPQYF +GCAEVFTFIGQLEFFYDQAPDAMRS+ +ALSLTTV +GNYLSTLLVTIV
Sbjct: 453 IFWQVPQYFFIGCAEVFTFIGQLEFFYDQAPDAMRSMMAALSLTTVGLGNYLSTLLVTIV 512
Query: 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541
TKVTT++GKLGWIP NLN GHLDYF+WLL ILSV+NF VYL +AK +TYK+ TG
Sbjct: 513 TKVTTRHGKLGWIPSNLNMGHLDYFFWLLAILSVVNFFVYLLVAKCYTYKRVTGH 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440283|ref|XP_004137914.1| PREDICTED: peptide transporter PTR5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/535 (79%), Positives = 478/535 (89%), Gaps = 1/535 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYLQ +LN NVTASN+VT+WSGTCY+TPLIGAFLAD+Y
Sbjct: 33 FILGNECCERLAYYGMSTNLVNYLQIRLNMDNVTASNSVTSWSGTCYLTPLIGAFLADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GRFWTIASFSIIY GMTLLT+ AS+ GLKPSCD CHP+G QTA TFVALYLIALGT
Sbjct: 93 LGRFWTIASFSIIYAFGMTLLTMAASIPGLKPSCDSSGCHPSGGQTAATFVALYLIALGT 152
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDE D+ ER+KKSSFFNWFY SIN+GA++ASSVLVWIQMNVGWGWG
Sbjct: 153 GGIKPCVSSFGADQFDENDEVERKKKSSFFNWFYFSINVGAMIASSVLVWIQMNVGWGWG 212
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+PAVAMAIAVVFFFSGS LYR+QKP GSPLTRI+QVIVA+ RK V VP DKSLL+ET
Sbjct: 213 FGVPAVAMAIAVVFFFSGSSLYRLQKPAGSPLTRILQVIVAACRKHQVHVPEDKSLLHET 272
Query: 248 ADE-ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL 306
AD+ E I+GSRKLE T+ FKF DKA+VET+ DR+KG + WRLCTVTQVEELK+I+RLL
Sbjct: 273 ADDIESKIEGSRKLEHTNNFKFLDKASVETENDRIKGLPNEWRLCTVTQVEELKSIVRLL 332
Query: 307 PVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIV 366
PVWASGIVFA VYSQMSTMFVLQGNT+DQH+GP+FKIPSASLS+FDT+SV+FWAP+YD +
Sbjct: 333 PVWASGIVFAAVYSQMSTMFVLQGNTLDQHIGPSFKIPSASLSIFDTISVLFWAPVYDRL 392
Query: 367 IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT 426
IVP ARK T +ERGFTQLQRMGIGL IS+FSMV AG LEV RLN V+ NN YD+ETIPM+
Sbjct: 393 IVPIARKFTNNERGFTQLQRMGIGLAISVFSMVTAGALEVARLNYVRVNNLYDVETIPMS 452
Query: 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486
IFWQVPQYF +GCAEVFTFIGQLEFFYDQAPDAMRS+ +ALSLTTV +GNYLSTLLVTIV
Sbjct: 453 IFWQVPQYFFIGCAEVFTFIGQLEFFYDQAPDAMRSMMAALSLTTVGLGNYLSTLLVTIV 512
Query: 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541
TKVTT++GKLGWIP NLN GHLDYF+WLL ILSV+NF VYL +AK +TYK+ TG
Sbjct: 513 TKVTTRHGKLGWIPSNLNMGHLDYFFWLLAILSVVNFFVYLLVAKCYTYKRVTGH 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820152|ref|XP_002877959.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297323797|gb|EFH54218.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/538 (76%), Positives = 472/538 (87%), Gaps = 2/538 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGM TNLVNYL+ +LNQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y
Sbjct: 33 FILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKP-SCDKDACHPTGAQTAVTFVALYLIALG 126
+GR+WTIA+F IY GMTLLTL+ASV GLKP +C+ D CHP QTAV FVALY+IALG
Sbjct: 93 LGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSGQTAVFFVALYMIALG 152
Query: 127 TGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGW 186
TGGIKPCVSSFGADQFDE D+ E+ KKSSFFNWFY SIN+GAL+A++VLVWIQMNVGWGW
Sbjct: 153 TGGIKPCVSSFGADQFDENDEAEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212
Query: 187 GFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE 246
GFG+P VAM IAV FFF GSR YR+Q+PGGSPLTRI QVIVA+FRK V VP DKSLL+E
Sbjct: 213 GFGVPTVAMVIAVCFFFLGSRFYRLQRPGGSPLTRIFQVIVAAFRKMRVKVPEDKSLLFE 272
Query: 247 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK-GSADPWRLCTVTQVEELKAIIRL 305
TAD+E NI+GSRKL T KFFDKAAVE Q+D +K G +PWRLC+VTQVEELK+II L
Sbjct: 273 TADDESNIKGSRKLVHTDNLKFFDKAAVEIQSDSIKDGEVNPWRLCSVTQVEELKSIISL 332
Query: 306 LPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDI 365
LPVWA+GIVFATVYSQM+TMFVLQGNTMDQHMG NF+IPSASLSLFDT+SV+FW P+YD
Sbjct: 333 LPVWATGIVFATVYSQMNTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQ 392
Query: 366 VIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425
I+P ARK T +ERGFTQLQRMGIGL++SIF+M+ AG+LEVVRL+ VK +N YD + IPM
Sbjct: 393 FIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKSHNAYDQKQIPM 452
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTI 485
+IFWQ+PQY ++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLST+LVT+
Sbjct: 453 SIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTV 512
Query: 486 VTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
V K+T KNGK GWIPDNLNRGHLDYF++LL LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 513 VMKITKKNGKPGWIPDNLNRGHLDYFFYLLETLSFLNFLVYLWISKRYKYKKAVGRAH 570
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232435|ref|NP_190982.1| peptide transporter PTR1 [Arabidopsis thaliana] gi|75311821|sp|Q9M390.1|PTR1_ARATH RecName: Full=Peptide transporter PTR1 gi|13430486|gb|AAK25865.1|AF360155_1 putative peptide transport protein [Arabidopsis thaliana] gi|6822060|emb|CAB70988.1| peptide transport-like protein [Arabidopsis thaliana] gi|21280969|gb|AAM44932.1| putative peptide transport protein [Arabidopsis thaliana] gi|21537000|gb|AAM61341.1| peptide transport-like protein [Arabidopsis thaliana] gi|332645671|gb|AEE79192.1| peptide transporter PTR1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/538 (76%), Positives = 474/538 (88%), Gaps = 2/538 (0%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGM TNLVNYL+ +LNQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y
Sbjct: 33 FILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAY 92
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKP-SCDKDACHPTGAQTAVTFVALYLIALG 126
+GR+WTIA+F IY GMTLLTL+ASV GLKP +C+ D CHP +QTAV FVALY+IALG
Sbjct: 93 LGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALG 152
Query: 127 TGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGW 186
TGGIKPCVSSFGADQFDE D+ E+ KKSSFFNWFY SIN+GAL+A++VLVWIQMNVGWGW
Sbjct: 153 TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212
Query: 187 GFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE 246
GFG+P VAM IAV FFF GSR YR+Q+PGGSPLTRI QVIVA+FRK +V VP DKSLL+E
Sbjct: 213 GFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFE 272
Query: 247 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK-GSADPWRLCTVTQVEELKAIIRL 305
TAD+E NI+GSRKL T KFFDKAAVE+Q+D +K G +PWRLC+VTQVEELK+II L
Sbjct: 273 TADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITL 332
Query: 306 LPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDI 365
LPVWA+GIVFATVYSQMSTMFVLQGNTMDQHMG NF+IPSASLSLFDT+SV+FW P+YD
Sbjct: 333 LPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQ 392
Query: 366 VIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425
I+P ARK T +ERGFTQLQRMGIGL++SIF+M+ AG+LEVVRL+ VK +N YD + I M
Sbjct: 393 FIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHM 452
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTI 485
+IFWQ+PQY ++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLST+LVT+
Sbjct: 453 SIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTV 512
Query: 486 VTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
V K+T KNGK GWIPDNLNRGHLDYF++LL LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 513 VMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVGRAH 570
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468661|ref|XP_003604615.1| Peptide transporter PTR1 [Medicago truncatula] gi|355505670|gb|AES86812.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/532 (77%), Positives = 468/532 (87%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
I GNECCERLAYYGMSTNLVNYL+ + GN A+N VT WSGTCYITPL+GAFLAD+Y
Sbjct: 43 FILGNECCERLAYYGMSTNLVNYLEDRYGLGNAAAANTVTTWSGTCYITPLLGAFLADAY 102
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+GR+WTIASFS IY +GM LLT +A GLKPSCD D CHPT QTA F+ALYLIALGT
Sbjct: 103 LGRYWTIASFSSIYVIGMGLLTFSAIAPGLKPSCDTDGCHPTSGQTAALFIALYLIALGT 162
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDE D+ ER+KKSSFFNWFY SINIGAL+ASSVLVWIQMNVGWGWG
Sbjct: 163 GGIKPCVSSFGADQFDENDETERKKKSSFFNWFYFSINIGALIASSVLVWIQMNVGWGWG 222
Query: 188 FGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+P VAM IA++FFF GSR YR+Q PGGSPLTRI QVIVA+F+K VP DKSLLYET
Sbjct: 223 FGVPGVAMVIAIIFFFIGSRWYRLQIPGGSPLTRICQVIVAAFKKLGQQVPDDKSLLYET 282
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
D E NI+GSRKLE T++ K DKAAVET++DR+K +PWRLCTVTQVEELK+++RLLP
Sbjct: 283 TDVESNIKGSRKLEHTNELKCLDKAAVETESDRIKDLPNPWRLCTVTQVEELKSVVRLLP 342
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
VWAS I FATVYSQM TMFVLQGNTMDQH+GP FKIPSASLSLFDTLSVIFWAP+YD +I
Sbjct: 343 VWASLIAFATVYSQMGTMFVLQGNTMDQHIGPKFKIPSASLSLFDTLSVIFWAPVYDRLI 402
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
VPFARK TG+E GFTQLQR+GIGL+ISI SM+ AGILEV+RL+IV++NNYYD+ETIPM+I
Sbjct: 403 VPFARKYTGNEHGFTQLQRIGIGLVISIISMIVAGILEVIRLDIVRKNNYYDLETIPMSI 462
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487
FWQVPQYF++G AEVFT IGQ+EFFY QAPDAMRSLC+ALSLTT A+GNY+STLLVTIVT
Sbjct: 463 FWQVPQYFLIGAAEVFTNIGQMEFFYGQAPDAMRSLCAALSLTTNALGNYVSTLLVTIVT 522
Query: 488 KVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKAT 539
KVTT+NG LGWIPDN+NRGHLDYFYWLLTILS++NF+VYL IAK +TYKK T
Sbjct: 523 KVTTRNGSLGWIPDNMNRGHLDYFYWLLTILSLINFIVYLLIAKRYTYKKVT 574
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.985 | 0.938 | 0.737 | 1.4e-220 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.981 | 0.935 | 0.731 | 5.6e-219 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.976 | 0.905 | 0.601 | 1.8e-172 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.965 | 0.888 | 0.553 | 5.3e-159 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.434 | 0.433 | 0.600 | 7.7e-146 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.983 | 0.895 | 0.457 | 2.1e-123 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.965 | 0.894 | 0.424 | 1.6e-111 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.952 | 0.886 | 0.406 | 2.6e-111 | |
| TAIR|locus:2183194 | 609 | AT5G19640 [Arabidopsis thalian | 0.930 | 0.829 | 0.415 | 1.1e-108 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.970 | 0.894 | 0.414 | 1.9e-108 |
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2130 (754.9 bits), Expect = 1.4e-220, P = 1.4e-220
Identities = 396/537 (73%), Positives = 454/537 (84%)
Query: 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYM 68
I GNECCERLAYYGM TNLVNYL+ +LNQGN TA+NNVTNWSGTCYITPLIGAF+AD+Y+
Sbjct: 34 ILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYL 93
Query: 69 GRFWTIASFSIIYCLGMTLLTLTASVSGLKP-SCDKDACHPTGAQTAVTFVALYLIALGT 127
GR+WTIA+F IY GMTLLTL+ASV GLKP +C+ D CHP +QTAV FVALY+IALGT
Sbjct: 94 GRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAVFFVALYMIALGT 153
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GGIKPCVSSFGADQFDE D+ E+ KKSSFFNWFY SIN+GAL+A++VLVWIQMNVGWGWG
Sbjct: 154 GGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWG 213
Query: 188 FGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
FG+P GSR YR+Q+PGGSPLTRI QVIVA+FRK +V VP DKSLL+ET
Sbjct: 214 FGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFET 273
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK-GSADPWRLCTVTQVEELKAIIRLL 306
AD+E NI+GSRKL T KFFDKAAVE+Q+D +K G +PWRLC+VTQVEELK+II LL
Sbjct: 274 ADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLL 333
Query: 307 PVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIV 366
PVWA+GIVFATVYSQMSTMFVLQGNTMDQHMG NF+IPSASLSLFDT+SV+FW P+YD
Sbjct: 334 PVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQF 393
Query: 367 IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT 426
I+P ARK T +ERGFTQLQRMGIGL++SIF+M+ AG+LEVVRL+ VK +N YD + I M+
Sbjct: 394 IIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMS 453
Query: 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXX 486
IFWQ+PQY ++GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA+GNYLS
Sbjct: 454 IFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVV 513
Query: 487 XXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRAN 543
NGK GWIPDNLNRGHLDYF++LL LS LNFLVYLWI+K + YKKA GRA+
Sbjct: 514 MKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKAVGRAH 570
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2115 (749.6 bits), Expect = 5.6e-219, P = 5.6e-219
Identities = 392/536 (73%), Positives = 447/536 (83%)
Query: 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYM 68
I G ECCERLAYYGMSTNL+NYL+KQ+N NV+AS +V+NWSGTCY TPLIGAF+AD+Y+
Sbjct: 35 ILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYL 94
Query: 69 GRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTG 128
GR+WTIASF +IY GMTLLT++ASV GL P+C + CH T QTA+TF+ALYLIALGTG
Sbjct: 95 GRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYLIALGTG 154
Query: 129 GIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGF 188
GIKPCVSSFGADQFD+TD+ E+E KSSFFNWFY IN+GA++ASSVLVWIQMNVGWGWG
Sbjct: 155 GIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGL 214
Query: 189 GIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETA 248
G+P +GS YR+QKPGGSPLTR++QVIVAS RKS V +P D+SLLYE
Sbjct: 215 GVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQ 274
Query: 249 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSA--DPWRLCTVTQVEELKAIIRLL 306
D E +I GSRKLE T FFDKAAVET++D KG+A W+LCTVTQVEELKA+IRLL
Sbjct: 275 DAESSIIGSRKLEHTKILTFFDKAAVETESDN-KGAAKSSSWKLCTVTQVEELKALIRLL 333
Query: 307 PVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIV 366
P+WA+GIVFA+VYSQM T+FVLQGNT+DQHMGPNFKIPSASLSLFDTLSV+FWAP+YD +
Sbjct: 334 PIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKL 393
Query: 367 IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT 426
IVPFARK TGHERGFTQLQR+GIGL+ISIFSMV+AGILEV RLN V+ +N Y+ ETIPMT
Sbjct: 394 IVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMT 453
Query: 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXX 486
IFWQVPQYF+VGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT +A GNYLS
Sbjct: 454 IFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLV 513
Query: 487 XXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRA 542
G+ GWI NLN GHLDYF+WLL LS LNFLVYLWIAKW+TYKK TG A
Sbjct: 514 TKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1676 (595.0 bits), Expect = 1.8e-172, P = 1.8e-172
Identities = 324/539 (60%), Positives = 401/539 (74%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I GNECCERLAYYG++ NL+ YL +L+QGNV+A+ NVT W GTCY+TPLIGA LAD+
Sbjct: 49 PFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADA 108
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CDKDAC-HPTGAQTAVTFVALYLIA 124
Y GR+WTIA FS IY +GM+ LTL+ASV LKP+ C D C T AQ A+ F LYLIA
Sbjct: 109 YWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGGLYLIA 168
Query: 125 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW 184
LGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY SINIGALV+SS+LVWIQ N GW
Sbjct: 169 LGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGW 228
Query: 185 GWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL 244
G GFGIP G+ LYR QKPGGSP+TRI QV+VASFRKS+V VP D +LL
Sbjct: 229 GLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLL 288
Query: 245 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGS-ADPWRLCTVTQVEELKAII 303
YET D+ I GSRK+E T ++ DKAAV ++ + G ++ WRLCTVTQVEELK +I
Sbjct: 289 YETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILI 348
Query: 304 RLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIY 363
R+ P+WASGI+F+ VY+QMSTMFV QG M+ +G +F++P A+L FDT SVI W P+Y
Sbjct: 349 RMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLY 407
Query: 364 DIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIET- 422
D IVP ARK TG ++GFT++QRMGIGL +S+ M AA I+E++RL++ N+ +E+
Sbjct: 408 DRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMA--NDLGLVESG 465
Query: 423 --IPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSX 480
+P+++ WQ+PQYFI+G AEVF FIGQLEFFYDQ+PDAMRSLCSAL+L T A+GNYLS
Sbjct: 466 APVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSS 525
Query: 481 XXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKAT 539
NG+ GWI DNLN GHLDYF+WLL LS++N VY + A + KKA+
Sbjct: 526 LILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKAS 584
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1549 (550.3 bits), Expect = 5.3e-159, P = 5.3e-159
Identities = 298/538 (55%), Positives = 388/538 (72%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I GNECCERLAYYG++ NL+ Y +L++ NV+A+++V W GTCYITPLIGA +ADS
Sbjct: 60 PFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADS 119
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CDKDA---CHP-TGAQTAVTFVALY 121
Y GR+WTIASFS IY +GM LLTL+AS+ LKP+ C A C P T Q AV F LY
Sbjct: 120 YWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLY 179
Query: 122 LIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181
LIALGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY SINIG+ ++S++LVW+Q N
Sbjct: 180 LIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQEN 239
Query: 182 VGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADK 241
VGWG GF IP G+ LYR QKPGGSP+TR+ QV+VA++RK + +P D
Sbjct: 240 VGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDI 299
Query: 242 SLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGS-ADPWRLCTVTQVEELK 300
S LYET ++ I GSRK++ T +KF DKAAV ++ + G+ ++PW+LCTVTQVEE+K
Sbjct: 300 SFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVK 359
Query: 301 AIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWA 360
+IR+ P+WASGIV++ +YSQ+ST+FV QG +M++ + +F+IP AS +FDTL V+
Sbjct: 360 TLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIR-SFEIPPASFGVFDTLIVLISI 418
Query: 361 PIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDI 420
PIYD +VPF R+ TG +G T LQRMGIGL +S+ S+ AA I+E VRL + +
Sbjct: 419 PIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQ------- 471
Query: 421 ETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSX 480
+ + M+IFWQ+PQY ++G AEVF FIG++EFFYD++PDAMRS+CSAL+L AVG+YLS
Sbjct: 472 DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSS 531
Query: 481 XXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 538
GK GW+PD+LN+GHLDYF+WLL L ++N VY I T KKA
Sbjct: 532 LILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTKKKA 589
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 7.7e-146, Sum P(2) = 7.7e-146
Identities = 143/238 (60%), Positives = 172/238 (72%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS 66
P I NECCERLAYYG++ NL+ Y +L++ NV+A+ +V W GTCYITPLIGA +AD+
Sbjct: 50 PFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADA 109
Query: 67 YMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CDKDACHP-TGAQTAVTFVALYLIA 124
Y GR+WTIA FS IY GM LTL+ASV GLKP+ C C P T Q+ V F LYLIA
Sbjct: 110 YWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGSLCPPATMVQSTVLFSGLYLIA 169
Query: 125 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW 184
LGTGGIKPCVSSFGADQFD+TD ER +K+SFFNWFY +INIGA V+S+VLVWIQ N GW
Sbjct: 170 LGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGW 229
Query: 185 GWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS 242
GF IP G+ LYR QKP GSP+T + QV+VA++RKSN+ VP D +
Sbjct: 230 ELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDST 287
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 248/542 (45%), Positives = 340/542 (62%)
Query: 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAF 62
L + P I NE CE+LA G N+++YL QL+ A+N +TN++GT +TPL+GAF
Sbjct: 27 LITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAF 86
Query: 63 LADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CD-KDACHPTG-AQTAVTFVA 119
+ADS+ GRFWTI SIIY +GMTLLT++A + L+P C ++ C AQ ++ +VA
Sbjct: 87 IADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVA 146
Query: 120 LYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179
L L ALG+GGI+PCV +FGADQFDE+D + K ++FNW+Y + L+A +VLVWIQ
Sbjct: 147 LLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQ 206
Query: 180 MNVGWGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 239
NVGWG G GIP G +LYR P GSP TR++QV VA+FRK + + +
Sbjct: 207 DNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVS 266
Query: 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADP--WRLCTVTQVE 297
D SLLY + + I KL T F DKAA+ T+ D +K P WRL TV +VE
Sbjct: 267 DPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVE 326
Query: 298 ELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVI 357
ELK++IR+ P+ ASGI+ T Y+Q T + Q TM++H+ +F+IP+ S+S+F T++++
Sbjct: 327 ELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAML 386
Query: 358 FWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNY 417
YD V V ARK TG ERG T L RMGIG +ISI + + AG +EV R ++ +
Sbjct: 387 TTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGL 446
Query: 418 YDI-ETI-PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475
D TI P++ W +PQY + G AE F IG LEFFYDQAP++MRS +AL +++G
Sbjct: 447 LDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIG 506
Query: 476 NYLSXXXXXXXXXXXXXNGKLGWIPDN-LNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534
NY+S W+PDN LNRG L+YFYWL+T+L +N + YLW AK +T
Sbjct: 507 NYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYT 566
Query: 535 YK 536
YK
Sbjct: 567 YK 568
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
Identities = 229/539 (42%), Positives = 335/539 (62%)
Query: 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW 72
E ER+AYYG+S+NLV Y+ +L+QG V +SNNVTNW GT ++TP++GA++AD++ GR+
Sbjct: 41 EVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYI 100
Query: 73 TIASFSIIYCLGMTLLTLTASVSGLKP-SCDK---DACHPTGA-QTAVTFVALYLIALGT 127
T S IY LGM LLTL+ S+ GLKP C + C Q AV F ALY +A+GT
Sbjct: 101 TFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGT 160
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GG KP +S+ GADQFDE D ++ K SFFNW+ SI G A++VLV++Q NVGW G
Sbjct: 161 GGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIG 220
Query: 188 FGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
+G+ G+RLYR + P GSP T++ +VIVAS RK+ + +D + YE
Sbjct: 221 YGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYEL 280
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
E + + + STS +F ++A+++T GS WRLCT+T+VEE K ++++LP
Sbjct: 281 PPMEYASKRAFPIHSTSSLRFLNRASLKT------GSTHKWRLCTITEVEETKQMLKMLP 334
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
V V + + +Q+ T+F+ QG T+D+ + NF IP ASL F T S++ IYD V
Sbjct: 335 VLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVF 394
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNN--YYDIETIPM 425
V F RKLTG+ RG T LQRMGIG+++ I M+ A I E RL + + + IP+
Sbjct: 395 VKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPL 454
Query: 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXX 485
+IF +PQY ++G A+ F I +LEFFYDQAP++M+SL ++ + T++AVG ++S
Sbjct: 455 SIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSS 514
Query: 486 XXXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK-ATGRAN 543
G+ GWI +NLN LD +Y +L++LNF+++L + +++ Y+ T AN
Sbjct: 515 VSQITKKQGR-GWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSAN 572
|
|
| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 215/529 (40%), Positives = 328/529 (62%)
Query: 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR 70
G E ER+A+YG+++NLVNYL K+L++ +++ NV NWSG +ITP+ GA++ADSY+GR
Sbjct: 36 GYEAFERMAFYGIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGR 95
Query: 71 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGG 129
FWT + S+IY LGM LLT+ +V L+P+C+ C+ + Q +++LY IA+G GG
Sbjct: 96 FWTFTASSLIYVLGMILLTMAVTVKSLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGG 155
Query: 130 IKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFG 189
KP +S+FGADQFD E+++K SFFNW+ S +GAL A+ LV+IQ N+GWG G+G
Sbjct: 156 TKPNISTFGADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYG 215
Query: 190 IPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETA 248
IP G+ YR + L + ++QV +A+F+ + P D LYE
Sbjct: 216 IPTVGLLVSLVVFYIGTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELD 275
Query: 249 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV 308
G ++ T F+F DKAA++T + RV P CTVT+VE K ++ L+ +
Sbjct: 276 SHYYKSNGKHQVHHTPVFRFLDKAAIKTSS-RV-----P---CTVTKVEVAKRVLGLIFI 326
Query: 309 WASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIV 368
W ++ +T+++Q++T+FV QG T+D+ +G NF+IP+ASL F TLS++ P+YD V
Sbjct: 327 WLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQIPAASLGSFVTLSMLLSVPMYDQSFV 386
Query: 369 PFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYD-IETIPMTI 427
PF RK TG+ RG T LQR+G+G I I ++ A +EV R+ ++K + + +PM+I
Sbjct: 387 PFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIASAVEVKRMRVIKEFHITSPTQVVPMSI 446
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXX 487
FW +PQY ++G +VF IG LEFFYDQ+P+ M+SL + + + +GN+L+
Sbjct: 447 FWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEMQSLGTTFFTSGIGLGNFLNSFLVTMID 506
Query: 488 XXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536
G WI +NLN LDY+Y L ++S++N +++W A + YK
Sbjct: 507 KITSKGGGKSWIGNNLNDSRLDYYYGFLVVISIVNMGLFVWAASKYVYK 555
|
|
| TAIR|locus:2183194 AT5G19640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
Identities = 219/527 (41%), Positives = 334/527 (63%)
Query: 12 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF 71
N+ LA++G+ NLV +L + + QGN A+NNV+ W+GT Y+ L+GAFL+DSY GR+
Sbjct: 72 NQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRY 131
Query: 72 WTIASFSIIYCLGMTLLTLTASVSGLKP-SC-DKDA-CHPTGAQ-TAVTFVALYLIALGT 127
T F +I+ +G+ LL+ + +KP C D D C+P + A+ ++++YL+A G
Sbjct: 132 LTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGY 191
Query: 128 GGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
GG +P +++FGADQ D DD + K++FF++FY ++N+GAL ++++LV+ + W G
Sbjct: 192 GGHQPTLATFGADQLD--DD--KNSKAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEG 247
Query: 188 FGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247
F + + +R YR KP G+PL R+ QV VA+ RK +VV P D LYE
Sbjct: 248 FLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSVVRPGDPHELYEL 307
Query: 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP 307
E I+GSRK+ ++KF F D+AAV T+ DR ++ WRLC+VTQVEE K +++LLP
Sbjct: 308 EGPESAIKGSRKIFHSTKFLFLDRAAVITENDRNGTRSNAWRLCSVTQVEEAKCVMKLLP 367
Query: 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVI 367
+W I+++ +++QM+++FV QG+ M+ ++G F IP+AS+S+FD SV IY +I
Sbjct: 368 IWLCTIIYSVIFTQMASLFVEQGDVMNAYVG-KFHIPAASMSVFDIFSVFVSTGIYRHII 426
Query: 368 VPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427
P+ R T+L RMGIGL+I I +MVAAG+ E+ RL V + +TI
Sbjct: 427 FPYVRP--------TELMRMGIGLIIGIMAMVAAGLTEIQRLKRVVPGQ----KESELTI 474
Query: 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSXXXXXXXX 487
WQ+PQY +VG +EVF ++GQLEFF QAPD +++L S+L + ++A+GNY+S
Sbjct: 475 LWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMALGNYVSSLMVNIVM 534
Query: 488 XXXXXN-GKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWF 533
GWIP+NLN GH+D FY+L+ L+ ++F+VYL AKW+
Sbjct: 535 AITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKWY 581
|
|
| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 225/543 (41%), Positives = 341/543 (62%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
LI N+ LA++G+ NLV +L + + Q N A+NNV+ W+GT YI L+GAFL+DSY
Sbjct: 37 LILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSY 96
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS-CD-KDA-CHPTGA-QTAVTFVALYLI 123
GR+ T A F + G+ +L+L+ L+PS C +D+ C P +T + ++++YLI
Sbjct: 97 WGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLI 156
Query: 124 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183
ALG GG +P +++FGADQFD D E K +FF++FYL++N+G+L +++VL + +
Sbjct: 157 ALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGE 216
Query: 184 WGWGFGIPXXXXXXXXXXXXSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243
W GF G+ YR P SP +R QV+VA+ RK+ + V ++
Sbjct: 217 WPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELN 276
Query: 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVK----GSA-DPWRLCTVTQVEE 298
LY D E G +K+ T F+F D+AA+ T D + GS DPWRLC+VTQVEE
Sbjct: 277 LY---DSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWRLCSVTQVEE 333
Query: 299 LKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIF 358
+K ++RLLP+W I+++ V++QM+++FV+QG M ++ NF+IP++S+S FD LSV F
Sbjct: 334 VKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNI-KNFRIPASSMSSFDILSVAF 392
Query: 359 WAPIYDIVIVP-FAR-KLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNN 416
+ Y + P FAR T +G T+LQRMGIGL+I+I +M++AGI+E+ RL + +
Sbjct: 393 FIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPES 452
Query: 417 YYDIETIP-MTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475
I + ++IFWQVPQY ++G +EVF ++GQLEFF QAP ++S SAL + ++++G
Sbjct: 453 ATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLG 512
Query: 476 NYLSXXXXXXXXXXXXXNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535
NY+S + GWIP+NLN+GHL+ FY+LL L+ +F+VYL AKW+ Y
Sbjct: 513 NYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKY 572
Query: 536 KKA 538
K+
Sbjct: 573 IKS 575
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M390 | PTR1_ARATH | No assigned EC number | 0.7676 | 0.9871 | 0.9403 | yes | no |
| Q9LFB8 | PTR5_ARATH | No assigned EC number | 0.7672 | 0.9834 | 0.9368 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00161063 | hypothetical protein (569 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 543 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-105 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 2e-49 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-43 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-18 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-11 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 7e-11 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-07 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-105
Identities = 149/408 (36%), Positives = 210/408 (51%), Gaps = 42/408 (10%)
Query: 71 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 130
F TI SIIY +G LLTL A L P Q A+ ++ LYLIALGTGGI
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-----------QVALFYIGLYLIALGTGGI 49
Query: 131 KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGI 190
KP VS+FGADQFDET D ++ FF+WFY SIN G+L+A+ + ++Q NVG+ GFG+
Sbjct: 50 KPNVSAFGADQFDETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGL 106
Query: 191 PAVAMAIAVVFFFSGSRLYR-IQKPGGSPLTR-IMQVIVASFRKSNVVVPADKSLLYETA 248
PAV M +A++ F GSR Y+ PGGSP T I +I A+ + + +P D LY
Sbjct: 107 PAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWAL 166
Query: 249 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV 308
++ S+ T + AV + V L+AI+ +LP+
Sbjct: 167 EKYNKRSISQTKVHT-------RVAVIFIPLPKFWA----LFDQQGSVWLLQAILLMLPI 215
Query: 309 WASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIV 368
WA I+ +++Q++T+ V Q TMD+ + P F+IP AS F+ L+V+ PI D ++
Sbjct: 216 WAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVY 275
Query: 369 PFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYD----IETIP 424
P R +RG T QR G+G+ I I + A I+E R + T+P
Sbjct: 276 PLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRP---RYAAALGLTSPGWTVP 328
Query: 425 MTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTV 472
+ I W +P+ FI G G LEF D P +M SL + LS
Sbjct: 329 LFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-49
Identities = 107/476 (22%), Positives = 185/476 (38%), Gaps = 58/476 (12%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNV----TASNNVTNWSGTCYITPLIGAFL 63
LI E ER +YYGM L+ YL QL G A+ + + Y+TP+IG +L
Sbjct: 25 LIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWL 84
Query: 64 ADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI 123
AD +G TI +I+ +G +L +++ P G ++ L LI
Sbjct: 85 ADRVLGTRRTIVLGAILMAIGHLVLAISSVSG------------PGG-----LYIGLALI 127
Query: 124 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183
+GTG KP +SS + + + D ++ F FY+ INIG+L+A + + +N G
Sbjct: 128 IVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183
Query: 184 WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243
W GFG+ AV M I +V F G R + GG P + ++ +
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGI--GGVPDP-------NPLSFNFLLPVLGGLV 234
Query: 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAII 303
+ A + + + F A +E + ++
Sbjct: 235 VMILAALLTLLL------NQNTFSGVLLVISILIAIIYFAEAFRSPKVF----DERRRLL 284
Query: 304 RLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIY 363
+P++ ++F +Y QM + L + F++P A + +I ++PI
Sbjct: 285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPIL 344
Query: 364 DIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETI 423
+ R + + + +GL+ + G L ++ I +
Sbjct: 345 AALWTKLGRG----NKQPSTPIKFALGLI-----LAGLGFLILLLAGIWFGGPSGLV--- 392
Query: 424 PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS 479
+++W V Y + E+F L AP A++S A+ TVA G L
Sbjct: 393 --SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLG 446
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-43
Identities = 116/394 (29%), Positives = 192/394 (48%), Gaps = 62/394 (15%)
Query: 20 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79
YYGM T LV YL L TA+N ++ CY+TPLIGA +ADS++G+F TI S+
Sbjct: 3 YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62
Query: 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGA 139
+Y +G L +L A HP A++ V L LIALGTGGIKPCVS+FG
Sbjct: 63 VYVVGHALASLGAV---------PSLGHPL--HDALSLVGLALIALGTGGIKPCVSAFGG 111
Query: 140 DQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG-------WGWGFGIPA 192
DQF+E + + FF++FY +IN G+L ++ + ++ +VG + FG+P
Sbjct: 112 DQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPG 168
Query: 193 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEEC 252
+ M +A++ F GS++Y+ + P G+ ++++M+ IV + +K
Sbjct: 169 ILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR------------------- 209
Query: 253 NIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG 312
+ E + + D AA + + K ++R+L ++
Sbjct: 210 ---FRTRSEDWPRLHWLDWAAPKYLIR---------------MIRSTKRLLRVLFLFIPL 251
Query: 313 IVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFAR 372
+F ++ Q + + LQ MD +G F I + + L V+ PI+D V+ P
Sbjct: 252 PMFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAVNPLLVLILVPIFDYVVYPALA 310
Query: 373 KLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV 406
K FT L++M +G+L++ + A +L+
Sbjct: 311 KCGTR---FTSLRKMAVGMLLAALAFAVAALLQN 341
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 58/475 (12%)
Query: 13 ECCERLAYYGMSTNLVNYL--QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR 70
E ER +YYGM L YL Q L A +S Y+ +G + D G
Sbjct: 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78
Query: 71 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 130
T+ I+ LG +L ++ + F L IA+G+G
Sbjct: 79 KKTMVLGGIVLMLGHFMLAMSIYPDLI-------------------FYGLGTIAVGSGLF 119
Query: 131 KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGI 190
K SS ++ D R+ F FY+SINIG+ ++ + I N G+ GF +
Sbjct: 120 KANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176
Query: 191 PAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE 250
AV M I ++ FF+G + R PL+ ++ K + + A +L++ A
Sbjct: 177 AAVGMVIGLLTFFAGRHMLRDIGSVPDPLS----GQGKTYGKLLLALLAALALVFFCAWL 232
Query: 251 ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWA 310
++ + L T R+ A + + ++
Sbjct: 233 MHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVAR-------------NKMYAYIVLFL 279
Query: 311 SGIVFATVYSQM-STMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVP 369
+VF +Y+QM +++ N M M +P + V+ +P+ ++
Sbjct: 280 EAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338
Query: 370 FARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFW 429
RK + T + +G+L S + + + ++
Sbjct: 339 LGRK----GKDPTTPLKFTLGMLFCGASFLTF----AASIWFADAGG-------LTSPWF 383
Query: 430 QVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT 484
V Y E+ L ++ AP + + A+G+ L L T
Sbjct: 384 MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 16 ERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA 75
E ++YGM L+ YL QL + A + + Y+TP++G FLAD +G +
Sbjct: 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80
Query: 76 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVS 135
+++ +G + L AS HP+ +++L +I G G K VS
Sbjct: 81 LGALLMAIGH--VVLGAS-----------EIHPS-----FLYLSLAIIVCGYGLFKSNVS 122
Query: 136 SFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAM 195
+ ++ TD ++ F+ Y + N+G+++A + Q W GFG+ AV M
Sbjct: 123 CLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178
Query: 196 AIAVVFFFSGSR 207
+V F G+R
Sbjct: 179 IAGLVIFLCGNR 190
|
Length = 493 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 28/198 (14%)
Query: 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY 67
LI E ER YYG+ + YL KQL + +++S Y IG +L D
Sbjct: 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV 84
Query: 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGT 127
+G I +I+ +G L+ + G + ++ + IA+G
Sbjct: 85 LGTKRVIMLGAIVLAIGYALVAWS------------------GHDAGIVYMGMATIAVGN 126
Query: 128 GGIKPCVSSFGADQFDETD---DGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGW 184
G K SS + +++ D DG F +Y+SINIG+ + W+ GW
Sbjct: 127 GLFKANPSSLLSTCYEKDDPRLDGA-------FTMYYMSINIGSFFSMLATPWLAAKYGW 179
Query: 185 GWGFGIPAVAMAIAVVFF 202
F + V M I VV F
Sbjct: 180 SVAFALSVVGMLITVVNF 197
|
Length = 500 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 380 GFTQLQRMGIGLLISIFSMVA-----AGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQY 434
GI L I I+E V +N V +I WQ+PQY
Sbjct: 513 DLLSQLDFGIYYLTVITENPTIDGLQLQIVEDVPVNTV-------------SILWQLPQY 559
Query: 435 FIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486
+ EV + LEF Y QAP M+S+ AL L TVA+GN ++V I+
Sbjct: 560 VLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----IIVLII 607
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 26/183 (14%)
Query: 21 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII 80
G+ + + L + L A V+ +S + L+ +L+D + GR + ++
Sbjct: 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLL 73
Query: 81 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGAD 140
+ LG LL +S+ L V +L+ LG G + P ++ A+
Sbjct: 74 FALGSLLLAFASSLWLL-------------------LVGRFLLGLGGGALYPAAAALIAE 114
Query: 141 QFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200
F +++ F +GAL+ + + ++GW W F I A+ + +
Sbjct: 115 WFPP------KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168
Query: 201 FFF 203
Sbjct: 169 LLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 32/196 (16%)
Query: 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW 72
E ER YYG+ L + KQL A ++ Y IG ++ D +G
Sbjct: 23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82
Query: 73 TIASFSIIYCLG--MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI 130
TI +I+ +G MT ++L LKP + F+AL IA+G G
Sbjct: 83 TIVLGAIVLAIGYFMTGMSL------LKPD--------------LIFIALGTIAVGNGLF 122
Query: 131 KPCVSSFGADQFDETD---DGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWG 187
K +S + + D DG F FY+SINIG+L++ S+ I G+
Sbjct: 123 KANPASLLSKCYPPKDPRLDGA-------FTLFYMSINIGSLISLSLAPVIADKFGYSVT 175
Query: 188 FGIPAVAMAIAVVFFF 203
+ + + IA++ +F
Sbjct: 176 YNLCGAGLIIALLVYF 191
|
Length = 489 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 25/186 (13%)
Query: 18 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASF 77
YYG+ T L YLQ+ L A ++ + + L+G L+D R +
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 78 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSF 137
++ LG+ LL L S+ A+ VAL L+ G G P + +
Sbjct: 249 LLLAALGLLLLALAPSL-------------------ALLLVALLLLGFGLGFAFPALLTL 289
Query: 138 GADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAI 197
++ E + + F ++G + + + G+G F I A +
Sbjct: 290 ASELA------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 198 AVVFFF 203
A +
Sbjct: 344 AALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)
Query: 14 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT 73
L + L YL + L +T +S + + L+D + GR
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRV 64
Query: 74 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPC 133
+ +++ LG+ LL +S+ L V L LG G + P
Sbjct: 65 LLIGLLLFALGLLLLLFASSLWLL-------------------LVLRVLQGLGGGALFPA 105
Query: 134 VSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAV 193
++ AD F E++ +GA + + + GW F I A+
Sbjct: 106 AAALIADWF------PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 194 AMAIAVVFFF 203
+A V
Sbjct: 160 LALLAAVLAA 169
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.91 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.91 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.9 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.84 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.84 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.81 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.79 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.76 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.75 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.74 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.74 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.73 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.7 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.7 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.67 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.66 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.65 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.58 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.53 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.37 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.37 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.31 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.31 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.31 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.28 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.24 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.24 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.23 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.23 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.22 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.22 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.22 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.22 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.21 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.21 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.2 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.18 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.18 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.16 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.15 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.14 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.11 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.1 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.08 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.05 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.04 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.04 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.03 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.02 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.01 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.0 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.98 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.98 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.91 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.91 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.84 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.79 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.75 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.72 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.72 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.71 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.68 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.68 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.66 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.66 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.64 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.63 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.58 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.56 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.52 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.47 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.44 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.43 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.41 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.38 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.37 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.34 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.31 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.29 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.24 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.19 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.17 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.14 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.12 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.1 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.09 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.03 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.02 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.91 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.78 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.66 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.63 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.63 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.56 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.47 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.44 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.43 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.07 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.91 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.91 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.78 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.72 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.67 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.61 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.57 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.52 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.52 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.14 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.07 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.84 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.36 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.7 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.58 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.28 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.23 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 94.01 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.39 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.81 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 89.27 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 88.55 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 88.52 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.51 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 87.74 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 87.32 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.18 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 86.58 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 84.9 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 83.85 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=408.48 Aligned_cols=528 Identities=53% Similarity=0.902 Sum_probs=471.9
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
.|+++.+++..+.+|++++||+..++..|+.+++|.+...+...++.++......++++++++|.|+||.+++.++.++.
T Consensus 35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~ 114 (571)
T KOG1237|consen 35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLIS 114 (571)
T ss_pred hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCC-CC---CC-CCCCC-CCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccc
Q 009129 82 CLGMTLLTLTASVSGLKP-SC---DK-DACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 155 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~-~~---~~-~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 155 (543)
.+|..++.+....+.+.+ .| ++ ..|.+ +..+...++.++.+.++|.|+..|+..++.+|++++.++.++..+.+
T Consensus 115 ~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~ 194 (571)
T KOG1237|consen 115 LLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPS 194 (571)
T ss_pred HHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCccc
Confidence 999999999988888887 65 22 24443 66678899999999999999999999999999999877777777789
Q ss_pred eeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhccc
Q 009129 156 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNV 235 (543)
Q Consensus 156 ~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
.|+|+|...++|..++-.+..|+.++.||.+.|.++.+.++++++++....+.+++++|.+++...+.+++..+.++++.
T Consensus 195 fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~ 274 (571)
T KOG1237|consen 195 FFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKA 274 (571)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhHH
Q 009129 236 VVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKG-SADPWRLCTVTQVEELKAIIRLLPVWASGIV 314 (543)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (543)
..+.+++.+ + +.........++++.++++++....+.+.+++ +..||+.++.+++++.|.+++.++++...+.
T Consensus 275 ~~~~~~~~~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~ 348 (571)
T KOG1237|consen 275 VVSLDPEEL-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTII 348 (571)
T ss_pred cCCCcchhc-c-----ccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHH
Confidence 887775444 1 11111112223566788888887766555444 5778999999999999999999999999999
Q ss_pred HHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 009129 315 FATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 394 (543)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 394 (543)
++..+.|+.+++..|...|+++.++++.+|++.++.+..+.+.+..|+.+++..|+.||..+++.+++...|+.+|+.+.
T Consensus 349 ~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~s 428 (571)
T KOG1237|consen 349 YSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLS 428 (571)
T ss_pred HHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHH
Confidence 99999999999999999999999845999999999999999999999999999999999998877789999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHH
Q 009129 395 IFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV 474 (543)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i 474 (543)
.+++...+..+.+|.+.+.+ ....+++.+.+|+++++++.|++|++...+..++.++++|++||+.+++++.+..++
T Consensus 429 i~sm~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~ 505 (571)
T KOG1237|consen 429 ILSMAVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAV 505 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887644 223357899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhccCCCccccC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccC
Q 009129 475 GNYLSTLLVTIVTKVTTKNGKLGWIP-DNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG 540 (543)
Q Consensus 475 g~~l~~~i~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (543)
|+.++..+...+...++. ..+|.+ +++|.++.+++||+++....++...+.+..+++++++.++
T Consensus 506 G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 506 GNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999998876643 347999 9999999999999999999999999999998888876654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=344.63 Aligned_cols=461 Identities=22% Similarity=0.350 Sum_probs=353.9
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcC----CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLN----QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASF 77 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~----~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~ 77 (543)
|||..+.+..+|+||+++|||+...+..|++.+++ +|.+++.-..+.|....++.+.++||+|||++|+||+++.|
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 79999999999999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccccee
Q 009129 78 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 157 (543)
Q Consensus 78 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 157 (543)
.+++++|.++++.+.. .....++++..+.++|.|++.|+.+++++|+.|+++++ |...+
T Consensus 99 ail~~iGh~~L~~~~~-----------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gF 157 (498)
T COG3104 99 AILMAIGHLVLAISSV-----------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGF 157 (498)
T ss_pred HHHHHHHHHHHhcccc-----------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCc
Confidence 9999999999998730 12677899999999999999999999999999999876 89999
Q ss_pred ehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccC--CCCChH------HHHHHHHHHH
Q 009129 158 NWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQK--PGGSPL------TRIMQVIVAS 229 (543)
Q Consensus 158 ~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~ 229 (543)
+.+|++.|+|++++|.+.+++.+++||+..|.++++.+.++++.+.+.++....++ ++..+. .....++...
T Consensus 158 t~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (498)
T COG3104 158 TLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI 237 (498)
T ss_pred cEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887765443 222221 1111111111
Q ss_pred HhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 009129 230 FRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVW 309 (543)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (543)
.... .+.....+.- . ................ ....| .++. +++||++..++++
T Consensus 238 ~~~~--------~~~~l~~~~~--~------------~~~~~~~i~~~~~~~~-~~~~~---~~~~-~er~r~~~~~~Lf 290 (498)
T COG3104 238 LAAL--------LTLLLNQNTF--S------------GVLLVISILIAIIYFA-EAFRS---PKVF-DERRRLLAAIPLF 290 (498)
T ss_pred HHHH--------HHHHHHHHHH--H------------HHHHHHHHHHHHHHHH-HHhcc---CccH-HHHHHHHHHHHHH
Confidence 1100 0000000000 0 0000000000000000 00111 1223 7788899999999
Q ss_pred HHhHHHHhhccCcceEEEEecccc-cCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHH
Q 009129 310 ASGIVFATVYSQMSTMFVLQGNTM-DQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMG 388 (543)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~ 388 (543)
....++|+.+.|+++.+..+.... +++.. |+.+++++.+++|++.++++.|+.++++.|+.++. +. .+...++.
T Consensus 291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFa 365 (498)
T COG3104 291 LFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFA 365 (498)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHH
Confidence 999999999999998776655444 34434 68999999999999999999999999988877764 22 77888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHH
Q 009129 389 IGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS 468 (543)
Q Consensus 389 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 468 (543)
+|+.+++++++......... .++.+..+.+|+++.+++.++||.+..|+..++++..+|+++.+.++|.|
T Consensus 366 lGl~l~g~~fl~l~~~~~~~----------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w 435 (498)
T COG3104 366 LGLILAGLGFLILLLAGIWF----------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW 435 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence 99999999998887663321 11234589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 469 LTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 469 ~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
.+.+..|+.++..+.+.... +. +..+......+|+..+....+..+......++.++
T Consensus 436 fLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 436 FLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999888873221 00 00111223346777787777777666666655544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=330.20 Aligned_cols=464 Identities=17% Similarity=0.227 Sum_probs=329.4
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
|||..+.+++.+++|++++|++.+++++|+++++|.+.++++++.+.+....++.++++|+++||++||||+++.+.+++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999339999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++++.++++.+ ....++++|.++|+|.|...|+..++++|++|+++++ |+++++++|
T Consensus 92 ~~g~~~~~~~~~------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~ 149 (489)
T PRK10207 92 AIGYFMTGMSLL------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFY 149 (489)
T ss_pred HHHHHHHHHhcc------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHH
Confidence 999999998743 1334668899999999999999999999999887532 688999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceecc--CCCCChHHHHHHHHHH-------HHhh
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ--KPGGSPLTRIMQVIVA-------SFRK 232 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~ 232 (543)
++.|+|..+||.+++++.++.|||+.|+++.+.++++++.+...++..++. +|++++. |..+.++. ....
T Consensus 150 ~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~ 228 (489)
T PRK10207 150 MSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVC 228 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998776666666665555444332 2222222 22221110 0000
Q ss_pred cc-cccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 009129 233 SN-VVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWAS 311 (543)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (543)
.. .+.. ++..... ............... .+.++ .++++.+....++..
T Consensus 229 ~~~~~~~-~~~~~~~-----------------~~~~~i~~~~f~~~~------------~~~~~-~~r~r~~~~~~l~~~ 277 (489)
T PRK10207 229 AWLMHNV-EVANLVL-----------------IVLSIVVTIIFFREA------------FKLDK-TGRNKMFVAFVLMLE 277 (489)
T ss_pred HHHHhhh-hHHHHHH-----------------HHHHHHHHHHHHHHH------------hcCCH-HHHHHHHHHHHHHHH
Confidence 00 0000 0000000 000000000000000 00111 334455555555666
Q ss_pred hHHHHhhccCcceEEEEecc-cccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHH
Q 009129 312 GIVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIG 390 (543)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 390 (543)
...++..+.|....+..+.. ..++... |+.++++.++.+|++.+++..|+.+++..++ .+|+.+.++..++.+|
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl----~~r~~~~~~~~k~~~G 352 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHL----GSKGKDLSMPMKFTLG 352 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHH----hhCCCCCCcHHHHHHH
Confidence 77888888888665544433 3444545 7888999999999999999999987754333 3333337888999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHH
Q 009129 391 LLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT 470 (543)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 470 (543)
+++.+++++......... .+.+...+.+|+++.+++.++||.+..|+.++++.+.+|++++|.++|++++
T Consensus 353 ~~l~~~~~~~~~~~~~~~----------~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 353 MFLCSLGFLTAAAAGMWF----------ADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHHHHHHHHhh----------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 999998887654322110 0001135678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccC
Q 009129 471 TVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG 540 (543)
Q Consensus 471 ~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (543)
..++|+.+|..+....... .+..++. ..+..+..+|..+++.+++..++++...|+.++...++
T Consensus 423 ~~~ig~~lg~~l~~~~~~~--~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAVP--DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred HHHHHHHHHHHHHHHhccc--cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888755310 0000000 01234567788888888888777777777666543333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=324.41 Aligned_cols=452 Identities=20% Similarity=0.264 Sum_probs=328.9
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhh--cCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQ--LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~ 79 (543)
|+|..+.+++.+++|++++|++.++++.|++++ +|+|..+++++.+.+.++..++++++|+++||++||||+++++.+
T Consensus 8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~ 87 (475)
T TIGR00924 8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGI 87 (475)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHH
Confidence 678889999999999999999999999999987 999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+++.++++++++ ...++++|++.|+|.|...|+..++++|++|++++++ |++++++
T Consensus 88 ~~~~g~~~~~~~~~-------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r~~~~~~ 145 (475)
T TIGR00924 88 VLMLGHFMLAMSIY-------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---RDGGFTL 145 (475)
T ss_pred HHHHHHHHHHhccc-------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---ccceehh
Confidence 99999998887643 6678889999999999999999999999998765222 8889999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHH----HHHH-------HHHH
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLT----RIMQ-------VIVA 228 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~ 228 (543)
+|+..|+|..+||.+++++.+++||++.|.+.++..+++++.+...++..++.++++++.. +... .+..
T Consensus 146 ~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (475)
T TIGR00924 146 FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALAL 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999998999999999887777666666555554433322221110 0000 0000
Q ss_pred HHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHH
Q 009129 229 SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV 308 (543)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (543)
..+.... ...+... + .. ................ ..| ..+. .++++....+++
T Consensus 226 ~~~~~~~-~~~~~~~-----~---------~~-----~~~~~~~~~~~~~~~~---~~~----~~~~-~~~~~~~~~l~l 277 (475)
T TIGR00924 226 VFFCAWL-MHHVVIA-----N---------IL-----LMTVTLAVIIFFFRLA---FKP----RLDA-VARNKMYAYIVL 277 (475)
T ss_pred HHHHHHH-HhccHHH-----H---------HH-----HHHHHHHHHHHHHHHH---Hhc----cCCH-HHHhHHHHHHHH
Confidence 0000000 0000000 0 00 0000000000000000 000 0111 233344456677
Q ss_pred HHHhHHHHhhccCcceEEEE-ecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHH
Q 009129 309 WASGIVFATVYSQMSTMFVL-QGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRM 387 (543)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i 387 (543)
+.....++..++|+.+.+.. +...++...+ ++.++++.++.+|++.+++++|+.+.++.++.|| +.+.+...++
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~ 352 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHH
Confidence 78888888999998775432 2333556656 7889999999999999999999988765444444 1225666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHH
Q 009129 388 GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL 467 (543)
Q Consensus 388 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~ 467 (543)
.+|+++.++++...++.... .+++.+.+.+|+++.+++.++||.+..|..++++++++|++.||+++|+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~-----------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~ 421 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWF-----------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGM 421 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999888765211 1112357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 468 SLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 468 ~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
+.+...+|+.+++.+.....+. .+...+|...++++++..+++++..|..+|
T Consensus 422 ~~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 422 WFLAQAMGSLLGGYLATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888866531 123356777777777777777776666543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=318.53 Aligned_cols=474 Identities=16% Similarity=0.222 Sum_probs=328.8
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
|||..+.++..++++++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++++.++.
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++.+++....+ ....++++..+.++|.|...|+.+++++|++|+++++ |.++++++|
T Consensus 87 ~lg~lll~~~~~------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y 144 (493)
T PRK15462 87 AIGHVVLGASEI------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMY 144 (493)
T ss_pred HHHHHHHHHhhc------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHH
Confidence 999877764321 1233555666677888999999999999999987433 899999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceecc---CCCCChHHHHHHHHHHHHhhcccccC
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ---KPGGSPLTRIMQVIVASFRKSNVVVP 238 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
...|+|+.++|.+++++.+++||++.|.++++.++++++.+...++...+. ++++.+.++..........-... .
T Consensus 145 ~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 222 (493)
T PRK15462 145 AAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLV-A- 222 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHH-H-
Confidence 999999999999999999999999999998887777777766655544322 11111101100000000000000 0
Q ss_pred CcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhh
Q 009129 239 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATV 318 (543)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (543)
.+......-+++.... .. .............-. ......+|+||+...+++......+|..
T Consensus 223 -~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~------------~~~~~~~er~r~~~~~~l~~~~~~Fw~~ 283 (493)
T PRK15462 223 -TPALITVLFWKEWSVY----AL--IVATIIGLGVLAKIY------------RKAENQKQRKELGLIVTLTFFSMLFWAF 283 (493)
T ss_pred -HHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHH------------HhcCCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0000000000000000 00 000000000000000 0001125688888888999999999999
Q ss_pred ccCcceEEEEec-ccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 009129 319 YSQMSTMFVLQG-NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 397 (543)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 397 (543)
++|.++.+.... .++|+++. |+.+|+.+++++|++.+++++|+..+++.++.|| +++.+...++.+|+++.+++
T Consensus 284 ~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~ 358 (493)
T PRK15462 284 AQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAG 358 (493)
T ss_pred HHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHH
Confidence 999887543322 45677777 8999999999999999999999998875554333 22367888999999999999
Q ss_pred HHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHH-HHHH
Q 009129 398 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTV-AVGN 476 (543)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~ig~ 476 (543)
++++.+.... . +++...+.+|++..+++.++||.+..|...+.+.+.+|++.||+.+|++.+.. .+|+
T Consensus 359 f~~l~~~~~~----~-------~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~ 427 (493)
T PRK15462 359 FCILTLSARW----S-------AMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIAN 427 (493)
T ss_pred HHHHHHHHhh----c-------CCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 9888765422 0 11123688889999999999999999999999999999999999999998744 6888
Q ss_pred HHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHhhceeecc
Q 009129 477 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLN--FLVYLWIAKWFTYKKA 538 (543)
Q Consensus 477 ~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~--~~~~~~~~~~~~~~~~ 538 (543)
.+++.+....... +.+++ .........+..+|...+.+.++. ++.+.++.+..|.|++
T Consensus 428 ~~~g~~~~~~~~~-~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (493)
T PRK15462 428 YLAGVIADQTSQA-SFDAS---GAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNR 487 (493)
T ss_pred HHHHHHHHHhccc-cCCcc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8887777755321 00000 000001123455666666666444 5556666666555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=312.59 Aligned_cols=455 Identities=18% Similarity=0.269 Sum_probs=323.4
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
|+|..+.+++.++++++++|++.++++.|+++++|+|.++++++.+.+.......++++|+++||++|||++++.+.+++
T Consensus 19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999988887777878899999999339999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.+++.+++++.+ +...++++|+++|+|.|...|+..++++|++|+++++ |.++++++|
T Consensus 99 ~ig~~l~~~~~~------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~ 156 (500)
T PRK09584 99 AIGYALVAWSGH------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYY 156 (500)
T ss_pred HHHHHHHHHhcc------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHH
Confidence 999988887632 2456778899999999999999999999999876522 567899999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceecc--CCCCChHH--H----HHHHHHHHHhhc
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ--KPGGSPLT--R----IMQVIVASFRKS 233 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~--~----~~~~~~~~~~~~ 233 (543)
+..++|..+||.+++++.+++|||+.|.++++..+++++.+...++..+++ +|++++.+ . ...+........
T Consensus 157 ~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
T PRK09584 157 MSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIAT 236 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877666665554444333322 22222211 1 111111111110
Q ss_pred c-cccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHh
Q 009129 234 N-VVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG 312 (543)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (543)
. .+.++..... ............. . .....+ ..++++.+..+.++...
T Consensus 237 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~------~---~~~~~~-~~~~~~~~~~~~~~~~~ 285 (500)
T PRK09584 237 WLLHNQEIARMA---------------------LGVVALGIVVIFG------K---EAFAMK-GAARRKMIVAFILMLEA 285 (500)
T ss_pred HHHhcchHHHHH---------------------HHHHHHHHHHHHH------H---HHhhcC-HHHHHHHHHHHHHHHHH
Confidence 0 0000000000 0000000000000 0 000011 13455555566677888
Q ss_pred HHHHhhccCcceEEEEecc-cccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 009129 313 IVFATVYSQMSTMFVLQGN-TMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGL 391 (543)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 391 (543)
..+|..+.|+++.+..+.. ..+++.. |+.+++++++.+|++.+++.+|+.++. .+|+.+| .+..+++.+|+
T Consensus 286 i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~ 357 (500)
T PRK09584 286 IIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGM 357 (500)
T ss_pred HHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHH
Confidence 8899999998887665443 2444555 788999999999999999999998875 4444444 67789999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHH
Q 009129 392 LISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTT 471 (543)
Q Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 471 (543)
++++++++........ .++ ....+.+|+++.+++.++||.+..|...+++.+.+|+++||+++|++.+.
T Consensus 358 ~l~~l~f~~l~~~~~~----~~~-------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 358 VLCSGAFLVLPLGAKF----AND-------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred HHHHHHHHHHHHHHHh----cCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999887765321 111 22356778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhccCCCccccCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 472 VAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLN-RGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 472 ~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
..+|+.+++.+....... +-..+... .+.+..+|..+++++++..++.+...|+.++
T Consensus 427 ~a~g~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 427 TAGAALIAGYVANLMAVP-------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHhccc-------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887644310 00000001 1235677888888777666565555554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=264.06 Aligned_cols=442 Identities=31% Similarity=0.586 Sum_probs=345.6
Q ss_pred HhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 009129 18 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 97 (543)
Q Consensus 18 ~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~ 97 (543)
++|||+.+.+.+|+++.+|.+.+++..+...+.....+.++++|+++|+++||+|.+.++.++..+|..++++....+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998876431110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHH
Q 009129 98 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVW 177 (543)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~ 177 (543)
| ..+....+++..+.++|.|++.|+..++.+|++++++++ +|.+.++++|+++|+|.++++.+.++
T Consensus 81 ---------~--~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 81 ---------H--PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred ---------c--chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122455778899999999999999999999999865422 28899999999999999999999999
Q ss_pred hhccc-------ccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhh
Q 009129 178 IQMNV-------GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADE 250 (543)
Q Consensus 178 ~~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (543)
+.+++ +|+.+|.++++.++++++++...++++++++|.+++..+..+++..+.+++....+++.
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~~--------- 217 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEHW--------- 217 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCccc---------
Confidence 97443 69999999999999999998888887777777777666666776666654332111110
Q ss_pred hhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEec
Q 009129 251 ECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQG 330 (543)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (543)
...+++.+... ..++.++++|++++.++++.....+|..+.|+.+.+..|.
T Consensus 218 --------------~~~~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa 268 (654)
T TIGR00926 218 --------------PLHWLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQA 268 (654)
T ss_pred --------------chhHHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 01122211110 0123467889999999999999999999999998887777
Q ss_pred ccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 009129 331 NTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLN 410 (543)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~ 410 (543)
..++.+++ ++.++++.++.++.+.++++.|+.+..+.|..+|...+ .++..++.+|++++++++++....+.++.+
T Consensus 269 ~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~ 344 (654)
T TIGR00926 269 TRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNP 344 (654)
T ss_pred HHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777766 78899999999999999999999998888888776544 788999999999999999888766533211
Q ss_pred -------------------h-----------------------h-------------h----------------------
Q 009129 411 -------------------I-----------------------V-------------K---------------------- 413 (543)
Q Consensus 411 -------------------~-----------------------~-------------~---------------------- 413 (543)
. . +
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (654)
T TIGR00926 345 TLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNC 424 (654)
T ss_pred cccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCC
Confidence 0 0 0
Q ss_pred ---------c-cC---c---------------------------------------------------------------
Q 009129 414 ---------R-NN---Y--------------------------------------------------------------- 417 (543)
Q Consensus 414 ---------~-~~---~--------------------------------------------------------------- 417 (543)
+ +. +
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (654)
T TIGR00926 425 PKTTDAHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFY 504 (654)
T ss_pred CccccceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccc
Confidence 0 00 0
Q ss_pred --------------------------------c-------------------CCCCccchhHHHHHHHHHHHHHHHHhhh
Q 009129 418 --------------------------------Y-------------------DIETIPMTIFWQVPQYFIVGCAEVFTFI 446 (543)
Q Consensus 418 --------------------------------~-------------------~~~~~~~~~~~l~~~~~l~g~g~~~~~~ 446 (543)
+ ++++++.+.+|+++++++.+.||++...
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~ 584 (654)
T TIGR00926 505 FRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSV 584 (654)
T ss_pred cccceeeeeecccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 0 0012346788999999999999999999
Q ss_pred hhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 009129 447 GQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVY 526 (543)
Q Consensus 447 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 526 (543)
..+++.++++|+++|..+.+++.+..++|+.+...+...=.. +.+| .-|..++.++++-.+++
T Consensus 585 ~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~------~~~~-----------~~~~~~~~~~~~~~~~f 647 (654)
T TIGR00926 585 TGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENF------SVQA-----------AEFFLFASLMLVVMAIF 647 (654)
T ss_pred HHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------hHHH-----------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887765332 1122 34667777777777777
Q ss_pred HHHHhh
Q 009129 527 LWIAKW 532 (543)
Q Consensus 527 ~~~~~~ 532 (543)
.++.+.
T Consensus 648 ~~~a~~ 653 (654)
T TIGR00926 648 SILAYF 653 (654)
T ss_pred HHHHhc
Confidence 776654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=246.16 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=133.6
Q ss_pred HhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009129 22 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC 101 (543)
Q Consensus 22 ~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 101 (543)
.++..+...++++++.+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++++++++
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s-------- 254 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG-------- 254 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 3455566778889999999999999999999999999999999999 9999999999999999999888754
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc
Q 009129 102 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~ 181 (543)
.+.++++|++.|+|.|+..|...++++|.+|++. |++.+++......+|.++++.++..+...
T Consensus 255 -----------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 255 -----------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999988 99999999999999999998877665432
Q ss_pred -------------cccchhhhHHHHHHHHHHHHH
Q 009129 182 -------------VGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 182 -------------~g~~~~f~i~~~~~~i~~~~~ 202 (543)
.+||+.|++.++..++.++..
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 358888888776555554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=232.34 Aligned_cols=380 Identities=13% Similarity=0.135 Sum_probs=250.1
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
++++..+++..++++.+.++++.|+++++|.|..+.|...+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+..+++ .+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+...++
T Consensus 92 ~~~~~~~-------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~ 146 (400)
T PRK11646 92 TMAIAHE-------------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSA 146 (400)
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 8887643 7788999999999999999999999999999888 99999999999999
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhh
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE 246 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (543)
|..+||.+++++. .+||++.|++.+...++..+......++.+.+ ++.++..+
T Consensus 147 g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~------------------------- 199 (400)
T PRK11646 147 GAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPVRE------------------------- 199 (400)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhhHH-------------------------
Confidence 9999999999998 67999999988776555544333333221100 00000000
Q ss_pred hhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEE
Q 009129 247 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMF 326 (543)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (543)
.+ .+..++++.................. ....+.+
T Consensus 200 ----------------------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~ 234 (400)
T PRK11646 200 ----------------------------------------GM----TRVLRDKRFVTYVLTLTGYYMLAVQV-MLMLPIM 234 (400)
T ss_pred ----------------------------------------HH----HHHHcCchHHHHHHHHHHHHHHHHHH-HHhhhhh
Confidence 00 00001111111111111111111001 0111111
Q ss_pred EEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009129 327 VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV 406 (543)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 406 (543)
..+ . + +.....+.+.....+....... +..++..+| .+.++++..+.++.+++.+..+..+
T Consensus 235 ~~~------~-~-~~~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~r---~~~~~~~~~~~~~~~~~~~~l~~~~- 295 (400)
T PRK11646 235 VND------I-A-GSPSAVKWMYAIEACLSLTLLY-------PIARWSEKR---FRLEHRLMAGLLIMSLSMFPIGMVS- 295 (400)
T ss_pred HHh------h-c-CCchHHHHHHHHHHHHHHHHHH-------HHHHHHHHh---cchhHHHHHHHHHHHHHHHHHHHhh-
Confidence 111 1 1 1001111111111211111111 122221122 3334556677777777766555431
Q ss_pred HhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 407 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
+.++.....++.+++++...|...+.+.+.+|++.||+++|+.++...+|..+|+.+.+.+
T Consensus 296 -------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 296 -------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 2333444556778888888899999999999999999999999999999999999999999
Q ss_pred HhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhce
Q 009129 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534 (543)
Q Consensus 487 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~ 534 (543)
.+..+..+ .....|+..+++.++..+......|+.|
T Consensus 357 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
T PRK11646 357 FDLGKALN------------QPELPWMMLGIIGLITLLALYWQFSQKR 392 (400)
T ss_pred HHHHhhcC------------CcchHHHHHHHHHHHHHHHHHHHHhhch
Confidence 87643211 1123455556666666555444444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=227.55 Aligned_cols=376 Identities=10% Similarity=0.024 Sum_probs=246.2
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|....+++..+...++.....+.++.++++++|.|..+.|++.+++.++..+++++.|+++||+ ||||++..+.+++.+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHH
Confidence 4556677888888888888889999999999999999999999999999999999999999999 999999999999988
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+.+.++...+.. ...+...+++.|+++|+|.+...+...+++.|..|+++ |++++++....
T Consensus 94 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 156 (399)
T PRK05122 94 SGLLYLLAGLLAAW-----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIA 156 (399)
T ss_pred HHHHHHHhhhhhcc-----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhh
Confidence 87776654321100 00136678999999999999999999999999999988 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchh
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (543)
.++|..+||.+++++.+..||++.+++..+..++..+.. ++. +..++++++..+
T Consensus 157 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~---------------------- 210 (399)
T PRK05122 157 TYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVKGERLP---------------------- 210 (399)
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCCccchh----------------------
Confidence 999999999999999998999998877665433322221 111 100000000000
Q ss_pred hhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcc
Q 009129 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS 323 (543)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (543)
+ .+..++.+... .........+.......+
T Consensus 211 ------------------------~------------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 240 (399)
T PRK05122 211 ------------------------F------------------------RRVLGRVWPYG--MGLALASIGFGTIATFIT 240 (399)
T ss_pred ------------------------H------------------------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 000001111111101111
Q ss_pred eEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009129 324 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 403 (543)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 403 (543)
.++. +. +.. ..+.......++.++..++.+ ++.+| .++++.+..+.++.+++......
T Consensus 241 ~~~~------~~----~~~-~~~~~~~~~~~~~~~~~~~~g----~l~~r-------~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 241 LYYA------AR----GWD-GAALALTLFGVAFVGARLLFG----NLINR-------LGGLRVAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHH------Hc----ccc-cchHHHHHHHHHHHHHHHHHH----HHHHH-------hccHHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 110 011111111222222222222 23344 44446666777777776655544
Q ss_pred HHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 009129 404 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV 483 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~ 483 (543)
. .+.+..++..++.|++.+...|.......|..|++.||++.|+.+....+|..+++.+.
T Consensus 299 ~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 299 A--------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred h--------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 13344556678888888888888888888999999999999999999999999999999
Q ss_pred HHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 484 TIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAK 531 (543)
Q Consensus 484 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~ 531 (543)
+.+.+.. ++...|+..+++.+++++..+.+.+
T Consensus 359 g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 359 GLVASWF----------------GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9887632 2345677777777777655554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=227.15 Aligned_cols=374 Identities=11% Similarity=0.042 Sum_probs=239.7
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
+.+..++.....+...+.+ ..+.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||++..+.++..++.+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 91 (390)
T PRK03545 14 LALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHVLS 91 (390)
T ss_pred HHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH
Confidence 3344444433334333333 457789999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
.++++ .+.++++|+++|++.+...|...+++.|++|+++ |++++++.....++|.
T Consensus 92 ~~~~~-------------------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 92 ALAWN-------------------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAM 146 (390)
T ss_pred HHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHH
Confidence 88854 8899999999999999999999999999999988 9999999999999999
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhh
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETA 248 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (543)
.++|.+++.+.+..|||+.|++.++..++..+......|+.+++ ++++.++.
T Consensus 147 ~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~-------------------------- 198 (390)
T PRK03545 147 VLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKSL-------------------------- 198 (390)
T ss_pred HHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHHH--------------------------
Confidence 99999999999889999999998876555544333322221100 00000000
Q ss_pred hhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhHHHHhhccCcceEEE
Q 009129 249 DEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR-LLPVWASGIVFATVYSQMSTMFV 327 (543)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 327 (543)
.+..++ +.+.. ...........+........+.
T Consensus 199 --------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 232 (390)
T PRK03545 199 --------------------------------------------PLLFRR-PALVSLYLLTVVVVTAHFTAYSYIEPFV- 232 (390)
T ss_pred --------------------------------------------HHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000001 11111 1111111111111111111111
Q ss_pred EecccccCCCCCCcccC-hhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009129 328 LQGNTMDQHMGPNFKIP-SASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV 406 (543)
Q Consensus 328 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 406 (543)
.+.. +.+.. .+.+.....+..++... ...|..+| .+. +++..+..+..++........
T Consensus 233 ------~~~~--g~s~~~~~~~~~~~~~~~~~g~~--------~~g~l~dr---~~~-~~~~~~~~~~~~~~~~l~~~~- 291 (390)
T PRK03545 233 ------QQVA--GLSENFATLLLLLFGGAGIIGSV--------LFSRLGNR---HPS-GFLLIAIALLLVCLLLLLPAA- 291 (390)
T ss_pred ------HHhc--CCCccHHHHHHHHHHHHHHHHHH--------HHHHHhhc---cch-hHHHHHHHHHHHHHHHHHHHh-
Confidence 0011 11111 11111222222222222 22333333 332 234455555555443332221
Q ss_pred HhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 407 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
.+.+.+++..++.|++.....+...+.+.+..| +.|++++|+++....+|..+|+.+.|.+
T Consensus 292 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~ 352 (390)
T PRK03545 292 ------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV 352 (390)
T ss_pred ------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455566777888887777778888888877 5789999999999999999999999999
Q ss_pred HhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccC
Q 009129 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG 540 (543)
Q Consensus 487 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (543)
.+.. ++...|...+++.++++++++...++ +..+.||
T Consensus 353 ~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 389 (390)
T PRK03545 353 SLHL----------------GLSSIGYVGAALALAALVWSILIFRR-FPVTLEE 389 (390)
T ss_pred Hhcc----------------ChhHHHHHHHHHHHHHHHHHHHHccc-cchhhcc
Confidence 8633 23456778888888887777666653 3344454
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=225.04 Aligned_cols=374 Identities=11% Similarity=0.049 Sum_probs=239.9
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+.+.+..++..++.....+.++.|+++++|.|..+.|+..+.+.++..+++++.|+++||+ ||||+++.+.+.+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 344555667777777778888899999999999999999999999999999999999999999 9999999998887776
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+........+.. ...+...++++|+++|++.+...|...+++.|.+|+++ |++++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~ 157 (392)
T PRK12382 95 GLAYLLAAILPVS-----------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAM 157 (392)
T ss_pred HHHHHhhhccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHH
Confidence 5543222110000 01247788999999999999999999999999999888 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhh
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL 244 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (543)
++|..+||.+++++.+..||++.+.+..+..++... ..+ +.++++++++...+
T Consensus 158 ~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~----------------------- 210 (392)
T PRK12382 158 YGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPS----------------------- 210 (392)
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCch-----------------------
Confidence 999999999999998888999876665443222222 111 11111000000000
Q ss_pred hhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcce
Q 009129 245 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMST 324 (543)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (543)
..+. + +... +..+. ...............+.
T Consensus 211 -----------------------~~~~----------------~-----~~~~-~~~~~----~~l~~~~~~~~~~~~~~ 241 (392)
T PRK12382 211 -----------------------LWSV----------------V-----GLIW-KPGLG----LALQGVGFAVIGTFVSL 241 (392)
T ss_pred -----------------------HHHH----------------H-----HHHH-HhHHH----HHHHHHHHhHHHHHHHH
Confidence 0000 0 0000 00000 00000101000000011
Q ss_pred EEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009129 325 MFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGIL 404 (543)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~ 404 (543)
++. +.. .. ..+.......+..++..++.++ +.+| .++++.+..+..+.+++.+.....
T Consensus 242 ~~~------~~~----~~-~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~g~~~~~~~~~~~~~~~~~~~~~~ 299 (392)
T PRK12382 242 YFA------SKG----WA-MAGFTLTAFGGAFVLMRVLFGW----MPDR-------FGGVKVAIVSLLVETVGLLLLWLA 299 (392)
T ss_pred HHH------hcC----Cc-hhHHHHHHHHHHHHHHHHHHHH----HHHh-------cCCCeehHHHHHHHHHHHHHHHHc
Confidence 000 001 00 0111111122222233333222 3344 444455667777777776655432
Q ss_pred HHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009129 405 EVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT 484 (543)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~ 484 (543)
.+.+...+..++.+++.+...|...+...+..|++.||++.|+.++...+|+.+++.+.+
T Consensus 300 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 300 --------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444556678888888888888888899999999999999999999999999999999
Q ss_pred HhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009129 485 IVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA 530 (543)
Q Consensus 485 ~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ 530 (543)
.+.+..+ +...|.+.+++.+++.++.+...
T Consensus 360 ~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 360 MLATSFG----------------YPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHhC----------------chHHHHHHHHHHHHHHHHHHhhc
Confidence 9987432 34567777777777766655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=233.72 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=120.5
Q ss_pred CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHH
Q 009129 36 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAV 115 (543)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (543)
+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.+.. ...+...
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~ 117 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS-------------PKSVMAT 117 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc-------------cchHHHH
Confidence 45566788999999999999999999999999 999999999999999998888764210 0012578
Q ss_pred HHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc---------------
Q 009129 116 TFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM--------------- 180 (543)
Q Consensus 116 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~--------------- 180 (543)
++++|+++|++.|+..+..+.+++|.+|+++ |+++.++.+....+|..+++.++.++..
T Consensus 118 ~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (502)
T TIGR00887 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASC 191 (502)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999 9999999999999999999888765431
Q ss_pred --------ccccchhhhHHHHHHHHHHH
Q 009129 181 --------NVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 181 --------~~g~~~~f~i~~~~~~i~~~ 200 (543)
.++||+.|.+.++..++..+
T Consensus 192 ~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 192 TGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999877765544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=236.95 Aligned_cols=151 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcc-cCCCCCCCCCCCCCCCchHH
Q 009129 36 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASV-SGLKPSCDKDACHPTGAQTA 114 (543)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 114 (543)
+.+..+.+++.+.+.++..+++++.|+++||+ ||||+++.+.+++.++.+.++++... .... .++.....
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------~~~~~~~~ 121 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG--------PDNTGYVP 121 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc--------ccchhHHH
Confidence 88889999999999999999999999999999 99999999999999888877753100 0000 00112356
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh--------cccccch
Q 009129 115 VTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ--------MNVGWGW 186 (543)
Q Consensus 115 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~--------~~~g~~~ 186 (543)
.++++|+++|++.|...|...++++|++|+++ |+++++.......+|..+++.+++.+. +..|||+
T Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~ 195 (479)
T PRK10077 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRY 195 (479)
T ss_pred HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHH
Confidence 78899999999999999999999999999998 999999999999999999987766543 3568999
Q ss_pred hhhHHHHHHHHHHHH
Q 009129 187 GFGIPAVAMAIAVVF 201 (543)
Q Consensus 187 ~f~i~~~~~~i~~~~ 201 (543)
.|++.++..++..+.
T Consensus 196 ~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 196 MFASEAIPALLFLML 210 (479)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887665554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=226.89 Aligned_cols=354 Identities=13% Similarity=0.094 Sum_probs=237.6
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
.|+.+.++...++..++++.+.++++.|+++++|.|..++|+..+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence 46777888889999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+..+++++ .+.++++|.+.|.+.+...|+..++..|..|+++ |++++++.+.
T Consensus 85 ~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~ 139 (395)
T PRK10054 85 SGFIAIPLVNN-------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYT 139 (395)
T ss_pred HHHHHHHHHhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHH
Confidence 88888887754 6677778888888888888899999999999887 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcch
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS 242 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (543)
..++|..+||.+++++.+ .+|+.+|.+.++..++.++......++.+. +++++..+
T Consensus 140 ~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~--~~~~~~~~--------------------- 195 (395)
T PRK10054 140 MLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK--AIATETGS--------------------- 195 (395)
T ss_pred HHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc--ccccchhh---------------------
Confidence 999999999999999875 799999998887666654443332222111 10000000
Q ss_pred hhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHH-HHHHHHhHHHHhhccC
Q 009129 243 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRL-LPVWASGIVFATVYSQ 321 (543)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (543)
+ .+. ++..+.|+++.. ....+...........
T Consensus 196 ------~-------------------~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (395)
T PRK10054 196 ------V-------------------WSP----------------------SVLLQDKALLWFTCSGFLASFVSGAFASC 228 (395)
T ss_pred ------h-------------------hhh----------------------hhhccCceehHHHHHHHHHHHHHHHhhhh
Confidence 0 000 000000111111 1111111111111011
Q ss_pred cceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 009129 322 MSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA 401 (543)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 401 (543)
...+.. .. . +...+.............. .....+..+|+.+| .++++.+..++.+..++....
T Consensus 229 ~~~~~~----~~-~----~~~~~~~~~g~~~~~~~~~-----~~~~~~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~ 291 (395)
T PRK10054 229 ISQYVM----VV-A----DSDFAEKVVAVVLPVNAAM-----VVSLQYSVGRRLNA---ANIRPLMTAGTLCFVIGLVGF 291 (395)
T ss_pred HHHHHH----Hh-c----ccchHHHHHHHHHHhhhhh-----eeeehhHHHHHHcc---CCchhHHHHHHHHHHHHHHHH
Confidence 110000 00 0 1112222222111111111 11111233333444 555566777877777776655
Q ss_pred HHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 009129 402 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTL 481 (543)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~ 481 (543)
.... .+.+...+..++.++|+....|..++.+.+.+|++.||++.+..+ ...+|..+|+.
T Consensus 292 ~~~~-------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~ 351 (395)
T PRK10054 292 IFSG-------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPL 351 (395)
T ss_pred HHcc-------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHH
Confidence 4321 133344556788999999989999999999999999999998766 56689999999
Q ss_pred HHHHhHhhh
Q 009129 482 LVTIVTKVT 490 (543)
Q Consensus 482 i~~~~~~~~ 490 (543)
+.+.+.+..
T Consensus 352 ~~G~l~~~~ 360 (395)
T PRK10054 352 VSGVILTTL 360 (395)
T ss_pred HHHHHHHHc
Confidence 999999754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=224.21 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=142.6
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.++.....+++....+..-... ..+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 94 (406)
T PRK11551 17 IGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHH
Confidence 3344445555555555444433 456678999999999999999999999999999999999 99999999999998888
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 165 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (543)
+.+.++.+ .+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+...+
T Consensus 95 ~~~~~~~~-------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~ 149 (406)
T PRK11551 95 LATAQAWD-------------------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVP 149 (406)
T ss_pred HHHHHhcc-------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHH
Confidence 88877754 7888999999999999999999999999999888 9999999999999
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
+|..+++.+++.+.+..+|++.|++.++..++..+..
T Consensus 150 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 150 FGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888899999998776544444333
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=211.91 Aligned_cols=374 Identities=14% Similarity=0.132 Sum_probs=254.7
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
|...+.+.+..|.....=+.....++. +.+++|.|..++|+.++.|..+..++.|+...++||+ .||++++..++++.
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi 89 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFI 89 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 445566677778877777877777766 7789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.++++++++ +..+.++|++.|+..|.+++...++.++..|+++ |+++++....
T Consensus 90 ~~n~l~alAp~-------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~ 144 (394)
T COG2814 90 VSNLLSALAPS-------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFT 144 (394)
T ss_pred HHHHHHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHH
Confidence 99999999976 9999999999999999999999999999999999 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc-ceeccCCCCChHHHHHHHHHHHHhhcccccCCcc
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR-LYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADK 241 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (543)
+..++..+|..++.++.+.+|||..|+.-++..++.++..+...| ....+++ +.+..+..+
T Consensus 145 G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~-~~~~~~~~~----------------- 206 (394)
T COG2814 145 GLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSL-PGPLRTLLR----------------- 206 (394)
T ss_pred HHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCC-CcchhHHHH-----------------
Confidence 999999999999999999999999999998887777777666655 1111000 011000000
Q ss_pred hhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhHHHHhhcc
Q 009129 242 SLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR-LLPVWASGIVFATVYS 320 (543)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 320 (543)
+.+++++.. .....+.....+..|.
T Consensus 207 ------------------------------------------------------~l~~p~v~~~l~~t~l~~~g~F~~ft 232 (394)
T COG2814 207 ------------------------------------------------------LLRRPGVLLGLLATFLFMTGHFALYT 232 (394)
T ss_pred ------------------------------------------------------HhcCchHHHHHHHHHHHHcchhhhHH
Confidence 000111111 1111111122222222
Q ss_pred CcceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 009129 321 QMSTMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV 399 (543)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 399 (543)
...+++ .+.. +++. ..+..-...+++.++...+.++ +.|| ++++.+.....+.++.++
T Consensus 233 Yi~P~L-------~~v~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr----l~dr--------~~~~~l~~~~~l~a~~~l 291 (394)
T COG2814 233 YIRPFL-------ESVA--GFSVSAVSLVLLAFGIAGFIGNLLGGR----LADR--------GPRRALIAALLLLALALL 291 (394)
T ss_pred hHHHHH-------HHcc--CCCHhHHHHHHHHHHHHHHHHHHHHhh----hccc--------cchhHHHHHHHHHHHHHH
Confidence 211111 1111 2222 1122223333333444333333 3333 233455666677777776
Q ss_pred HHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 009129 400 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS 479 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~ 479 (543)
.+.+.. .+.+..+...++.+++........+....+.+ ++.++.+++++..+.++|..+|
T Consensus 292 ~l~~~~-------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~G 351 (394)
T COG2814 292 ALTFTG-------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALG 351 (394)
T ss_pred HHHHhc-------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHH
Confidence 666542 23344444555566665555555555555533 4669999999999999999999
Q ss_pred HHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 480 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
..+.+.+.+.. ++....+..+.+.++++++.+...+.
T Consensus 352 A~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 352 AALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999743 23445667677777776665554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=223.10 Aligned_cols=393 Identities=12% Similarity=0.051 Sum_probs=247.7
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+...++..+++..++.......++.+. ++++.+..+.|++.+.+.++..++.++.|+++||+ |||+++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGL 94 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHH
Confidence 4445566667777666665566666655 56788999999999999999999999999999999 999999999888887
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+.++..... ...+.+.+++.|++.|++.+...+...+++.|..|+++ |+++.++.+..
T Consensus 95 ~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 154 (417)
T PRK10489 95 GFIGLALNAFL--------------PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLT 154 (417)
T ss_pred HHHHHHHHHHc--------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHH
Confidence 77665432100 00236778889999999999888999999999999887 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccC-CCCChHHHHHHHHHHHHhhcccccCCcch
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQK-PGGSPLTRIMQVIVASFRKSNVVVPADKS 242 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (543)
.++|..+||.+++++.+..+|++.|.+.++..++..+..... ++.+.++ +++++..+.
T Consensus 155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-------------------- 213 (417)
T PRK10489 155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSL-------------------- 213 (417)
T ss_pred HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHH--------------------
Confidence 999999999999999888899999998877666555443322 2111000 000000000
Q ss_pred hhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCc
Q 009129 243 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQM 322 (543)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (543)
.+ ++ +...+.+.+...+....+...........
T Consensus 214 --------------------------~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T PRK10489 214 --------------------------LA----------------GF-----RFLLASPVVGGIALLGGLLTMASAVRVLY 246 (417)
T ss_pred --------------------------HH----------------HH-----HHHHcChHHHHHHHHHHHHHHHHhHHHhh
Confidence 00 00 00000111111111111111111111111
Q ss_pred ceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 009129 323 STMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA 401 (543)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 401 (543)
+. +. .+..+ .+. ..+.+.....++.++...+.++ +.+| .++.+.+..+.++.+++++.+
T Consensus 247 p~-~~------~~~~g--~~~~~~g~~~~~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 247 PA-LA------DEVWQ--MGAAQIGLLYAAVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred HH-HH------HhccC--CChhHhHHHHHHHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHHHH
Confidence 11 11 11111 111 1122222222333333333222 2222 223344566666666666555
Q ss_pred HHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 009129 402 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTL 481 (543)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~ 481 (543)
... .+.+......++.+++.+...+...+++.|..|++.||+++|+++....+|..+|+.
T Consensus 307 ~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 307 GLM--------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred Hcc--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 432 233445566777888888877888899999999999999999999999999999999
Q ss_pred HHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccCCC
Q 009129 482 LVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRA 542 (543)
Q Consensus 482 i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 542 (543)
+.|.+.+..+ ....+...+++.++..++.....+++|++++||.+
T Consensus 367 l~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 367 LLGGLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999987432 12345566666666666666666777777776654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=227.92 Aligned_cols=396 Identities=12% Similarity=0.020 Sum_probs=237.0
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
..+++..++..+-. .+.......+.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++.+.+++.++++
T Consensus 9 ~~~~~~~~~~~ld~-tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 9 VIIVLVYIPVAIDA-TVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 33445555554444 4444545566789999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhccc-CCCCccccccccceeehhhhhHh
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQF-DETDDGEREKKSSFFNWFYLSIN 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~ 165 (543)
+++.+++ .+.++++|+++|+|.+...|...+.+.+.+ |+++ |+++++++....+
T Consensus 87 ~~~~a~~-------------------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~~~ 141 (495)
T PRK14995 87 AAAFSPT-------------------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAVGS 141 (495)
T ss_pred HHHHcCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHH
Confidence 9998865 889999999999999999998888887877 4555 9999999999999
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHH----H--HHHHHhhcccccCC
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQ----V--IVASFRKSNVVVPA 239 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~ 239 (543)
+|..+||.+++++.+++|||+.|++.....++.+++.....++.+.++.++.+...... . +....+........
T Consensus 142 ~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~ 221 (495)
T PRK14995 142 GGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLS 221 (495)
T ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCc
Confidence 99999999999999999999999998876666555544444432221111111111100 0 01111110000000
Q ss_pred cchhhhhhhhhhhhcccCcccccCcccchhhhhh-hhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhh
Q 009129 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAA-VETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATV 318 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (543)
++..... .......... ...+... ++...|++.++ .+.........+........
T Consensus 222 ~~~~~~~-----------------~~~~~~~l~~f~~~e~~~-~~p~~~~~lf~------~~~~~~~~~~~~~~~~~~~~ 277 (495)
T PRK14995 222 LWVTSLT-----------------LLTGALLLGLFIRTQLAA-SRPMIDMRLFT------HRIILSGVVMAMTAMITLVG 277 (495)
T ss_pred hHHHHHH-----------------HHHHHHHHHHHHHHHhcC-CCCCcCHHHhC------CcccHHHHHHHHHHHHHHHH
Confidence 0000000 0000000000 0000000 00011111111 11111111111111110000
Q ss_pred ccCcceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 009129 319 YSQMSTMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 397 (543)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 397 (543)
.....+.+.+. .. +++. ..+.......+...+..++.++ +.+| .++++.+..|.++.+++
T Consensus 278 ~~~~~~~~lq~------v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r-------~g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 278 FELLMAQELQF------VH--GLSPLEAGMFMLPVMVASGFSGPIAGI----LVSR-------LGLRLVATGGMALSALS 338 (495)
T ss_pred HHHHHHHHHHH------Hc--CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------cCchHHHHHHHHHHHHH
Confidence 00000111000 01 1111 1122222222333333343333 3444 44445667788887777
Q ss_pred HHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHH
Q 009129 398 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNY 477 (543)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ 477 (543)
......... ..+.+......++.|+|.+...+.....+.+..|++.+|.+.++.++...+|+.
T Consensus 339 ~~~l~~~~~-----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 339 FYGLAMTDF-----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred HHHHHHhcC-----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 765544311 123344456678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhh
Q 009129 478 LSTLLVTIVTKV 489 (543)
Q Consensus 478 l~~~i~~~~~~~ 489 (543)
+|+.+.+.+.+.
T Consensus 402 ~G~ai~g~i~~~ 413 (495)
T PRK14995 402 LGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=226.37 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=153.4
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+.+++..++..+..+.+.+.++.+. +++|.|..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 456677778888888888888887776 47999999999999999999999999999999999 9999999999999998
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+.++.+ .+.++++|+++|++.+...|...+++.|.+|+++ |++++++.+...
T Consensus 89 ~~~~~~~~~-------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 143 (471)
T PRK10504 89 SLFCALSGT-------------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPG 143 (471)
T ss_pred HHHHHHhCC-------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHH
Confidence 888877643 7788999999999999999999999999999887 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
++|..+||.+++++.+..|||+.|.+..+...+..+......+
T Consensus 144 ~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 144 QVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999988766555554444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=219.95 Aligned_cols=375 Identities=13% Similarity=0.053 Sum_probs=237.8
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
++....+..++.+.+.+| .+++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+..+++++.+.+++
T Consensus 16 ~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~ 93 (393)
T PRK09705 16 LIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMREL 93 (393)
T ss_pred HHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555 57789999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV 170 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l 170 (543)
+++ .+.++++|+++|+|.+...+...+++.|++| ++ |+++++.+..+.++|..+
T Consensus 94 a~~-------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 94 YPQ-------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGL 147 (393)
T ss_pred Ccc-------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHH
Confidence 865 7788999999999999999999999999987 66 899999999999999999
Q ss_pred HhHHHHHhhccc-ccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhh
Q 009129 171 ASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETAD 249 (543)
Q Consensus 171 ~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (543)
|+.+++++.++. +||..+.+.++..++.++.+....++ +|++++
T Consensus 148 g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------- 192 (393)
T PRK09705 148 GAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH------------------------------- 192 (393)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc-------------------------------
Confidence 999999988765 89988776554433333332222111 010000
Q ss_pred hhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEe
Q 009129 250 EECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQ 329 (543)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (543)
++ + .+ +.+.. ++++.....+........+.....+.+.++.+
T Consensus 193 ~~-------~--~~-----------------------~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~- 234 (393)
T PRK09705 193 KT-------T--TT-----------------------PVRVV-----FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE- 234 (393)
T ss_pred CC-------C--cC-----------------------Ccccc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00 0 00 00000 01111111111111122222222222222211
Q ss_pred cccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009129 330 GNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRL 409 (543)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~ 409 (543)
.+.+. ...+.......++.++...+.++ +.|| .++++.+..+..+..++........
T Consensus 235 -~g~s~-------~~ag~~~~~~~i~~i~g~~~~g~----l~~r-------~~~~~~~~~~~~l~~~~~~~~~~~~---- 291 (393)
T PRK09705 235 -IGASA-------QYSGSLLALMTLGQAAGALLMPA----MARH-------QDRRKLLMLALVLQLVGFCGFIWLP---- 291 (393)
T ss_pred -cCCCh-------hhhhHHHHHHHHHHHHHHHHHHH----HHhh-------ccchHHHHHHHHHHHHHHHHHHHcc----
Confidence 01111 11122222223333333333322 3444 4444556667666666655443321
Q ss_pred hhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 009129 410 NIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-DAMRSLCSALSLTTVAVGNYLSTLLVTIVTK 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~ 488 (543)
.....+ ..++.+++.+...|.......+..| ++.||+..|+.+....++..+++.+.+.+.+
T Consensus 292 ---------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~ 354 (393)
T PRK09705 292 ---------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS 354 (393)
T ss_pred ---------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1244567776777777766667774 6889999999999999999999999999987
Q ss_pred hhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccCC
Q 009129 489 VTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541 (543)
Q Consensus 489 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 541 (543)
..+ .+...|.+.++.+++..+..+.+.+|++.|.+.|+
T Consensus 355 ~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK09705 355 ISG---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQLWVKE 392 (393)
T ss_pred HhC---------------CchHHHHHHHHHHHHHHHHHHHhccccccchhccc
Confidence 543 23455666677777777776777777776655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=224.41 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=134.5
Q ss_pred HHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009129 21 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS 100 (543)
Q Consensus 21 ~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 100 (543)
+.+...++. +.+++|.|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++++.+++
T Consensus 40 ~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~------- 110 (434)
T PRK11663 40 KSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSSS------- 110 (434)
T ss_pred hhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHhH-------
Confidence 344444444 4567999999999999999999999999999999999 9999999999999999998888754
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 101 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
.+.+++.|++.|++.|...+...+++.|++|+++ |++++++.+...++|..++|.+++++.+
T Consensus 111 ------------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 111 ------------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred ------------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999988 9999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHH
Q 009129 181 NVGWGWGFGIPAVAMAIA 198 (543)
Q Consensus 181 ~~g~~~~f~i~~~~~~i~ 198 (543)
.+|||+.|.+.++..++.
T Consensus 173 ~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 899999999887654443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=217.15 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=125.8
Q ss_pred HhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009129 22 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC 101 (543)
Q Consensus 22 ~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 101 (543)
.........+++++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+......+.+......
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~--------- 77 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDPF--------- 77 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHhc---------
Confidence 3444455557789999999999999999999999999999999999 999987766555544433222212
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc
Q 009129 102 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~ 181 (543)
+...++++|+++|+|.+. .+.....++|++|+++ |++++++.+.+.++|..+++.+++++.+.
T Consensus 78 ----------~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~ 140 (368)
T TIGR00903 78 ----------NYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTA 140 (368)
T ss_pred ----------cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 388999999999999986 4556666799999888 99999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHhc
Q 009129 182 VGWGWGFGIPAVAMAIAVVFFFSG 205 (543)
Q Consensus 182 ~g~~~~f~i~~~~~~i~~~~~~~~ 205 (543)
+|||+.|.+.++..++..++....
T Consensus 141 ~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 141 GGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998776655544444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=216.17 Aligned_cols=356 Identities=14% Similarity=0.098 Sum_probs=233.9
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
.++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ ||||++..+.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 3566777777777777778888775 5899999999999999999999999999999999 9999999999998888888
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHH
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
+......+ ..+.+.++++|++.|++.+...|...++++|.+|+++ |++++++.+...++|
T Consensus 81 ~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 81 LPFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLF 140 (365)
T ss_pred HHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHH
Confidence 77765210 0137889999999999999999999999999999888 999999999999999
Q ss_pred HHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhh
Q 009129 168 ALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247 (543)
Q Consensus 168 ~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (543)
..+||.+++++.+..||++.|++.++..+++.+.....+.+.+.+ +++++.++ +. .
T Consensus 141 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~----~- 196 (365)
T TIGR00900 141 YIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSN------------------AV----L- 196 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccch------------------hH----H-
Confidence 999999999999889999999988776555544433332211110 00000000 00 0
Q ss_pred hhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHH-HHHHhHHHHhhccCcceEE
Q 009129 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP-VWASGIVFATVYSQMSTMF 326 (543)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 326 (543)
.+ ..+ .+ +...+.+.+..... ................+.+
T Consensus 197 --~~----------------~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (365)
T TIGR00900 197 --RD----------------TRE----------------GI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYV 237 (365)
T ss_pred --HH----------------HHh----------------HH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 000 00 00000111111111 1111111111110111111
Q ss_pred EEecccccCCCCCCcccChh---hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009129 327 VLQGNTMDQHMGPNFKIPSA---SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 403 (543)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 403 (543)
. ....+ .++. .+.....++.++...+.+ ++.|| .++++.+..+..+.+++.....+
T Consensus 238 ~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 296 (365)
T TIGR00900 238 Q------SKYLG----RGSTHYGWVLAAFGLGALLGALLLG----LLGRY-------FKRMALMTGAIFVIGLAILVVGL 296 (365)
T ss_pred H------HHHhC----CchHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------hchhHHHHHHHHHHHHHHHHHHh
Confidence 1 00011 1122 222222233333333332 23333 33345555566666666555544
Q ss_pred HHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 009129 404 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV 483 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~ 483 (543)
.. + +.+...+..++.+++.+...+...++..|..|++.||++.|+.+....++..+++.+.
T Consensus 297 ~~------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 297 TP------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred hc------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1 2455566778889999999999999999999999999999999999999999999999
Q ss_pred HHhHh
Q 009129 484 TIVTK 488 (543)
Q Consensus 484 ~~~~~ 488 (543)
+.+.+
T Consensus 358 g~l~~ 362 (365)
T TIGR00900 358 GPLAD 362 (365)
T ss_pred HHHHH
Confidence 98876
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=217.77 Aligned_cols=157 Identities=18% Similarity=0.299 Sum_probs=139.7
Q ss_pred hHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 009129 23 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD 102 (543)
Q Consensus 23 ~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 102 (543)
..+....++++++|.|..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.++++++.+
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~--------- 81 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAGA--------- 81 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHcC---------
Confidence 334445568889999999999999999999999999999999999 9999999999999999999888754
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc
Q 009129 103 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~ 182 (543)
.+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++++.+..
T Consensus 82 ----------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 145 (399)
T TIGR00893 82 ----------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHF 145 (399)
T ss_pred ----------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999888 999999999999999999999999998889
Q ss_pred ccchhhhHHHHHHHHHHHHHHhc
Q 009129 183 GWGWGFGIPAVAMAIAVVFFFSG 205 (543)
Q Consensus 183 g~~~~f~i~~~~~~i~~~~~~~~ 205 (543)
+|++.|++.++..++..+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 146 SWQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred CchHHHHHHHHHHHHHHHHhhhe
Confidence 99999998877665554444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=214.95 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=136.5
Q ss_pred hHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009129 19 AYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK 98 (543)
Q Consensus 19 ~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~ 98 (543)
....+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||++..+..+..++.+.+..+.+
T Consensus 28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~----- 100 (406)
T PRK15402 28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQS----- 100 (406)
T ss_pred hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 44445555544 5578999999999999999999999999999999999 9999999999999999888887754
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHh
Q 009129 99 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~ 178 (543)
.+.+++.|+++|++.+...+...+++.|.+|+++ |.+.+++.+....+|..++|.+++++
T Consensus 101 --------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 101 --------------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred --------------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999988999999999999888 88888888888889999999999999
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHh
Q 009129 179 QMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 179 ~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.+..+|++.|++.++..++..+....
T Consensus 161 ~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 161 IHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHccCccHHHHHHHHHHHHHHHHHHH
Confidence 88889999999887766655554433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=224.05 Aligned_cols=388 Identities=12% Similarity=0.094 Sum_probs=231.6
Q ss_pred HHhhhcCCC---chhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 009129 30 YLQKQLNQG---NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC 106 (543)
Q Consensus 30 ~l~~~l~~s---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 106 (543)
.+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+.++++.+
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------------- 179 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSPN------------- 179 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHccc-------------
Confidence 456788998 88999999999999999999999999999 9999999999999999998888754
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccch
Q 009129 107 HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGW 186 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~ 186 (543)
.+.++++|++.|++.+...+...+++.|.+|+++ |+.+.++......+|.+++|.++..+.+ ||+
T Consensus 180 ------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~ 244 (505)
T TIGR00898 180 ------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRW 244 (505)
T ss_pred ------HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence 8899999999999999999999999999999998 9999999988999999999988776643 999
Q ss_pred hhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCccc
Q 009129 187 GFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKF 266 (543)
Q Consensus 187 ~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (543)
.|++.++..++..+..+. .++.+.....++..++..+.+....+.++...+++. .+...+++.... .+
T Consensus 245 ~~~~~~i~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~-- 312 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWF-VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV---LSLSLEKDLSSS------KK-- 312 (505)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHH---Hhhhhhhhhhhc------cC--
Confidence 999888766655554433 222111000111122222222222222211111000 000000000000 00
Q ss_pred chhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChh
Q 009129 267 KFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSA 346 (543)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (543)
..+++...+++ .-++..+.....+.... ..+... ..+. . ..+ .+..
T Consensus 313 ------------------~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~-~~~~------~-~~~----~~~~ 358 (505)
T TIGR00898 313 ------------------QYSFLDLFRTP-NLRKTTLCLMMLWFTTA---FSYYGL-VLDL------G-NLG----GNIY 358 (505)
T ss_pred ------------------CCcHHHHhCCh-HHHHHHHHHHHHHHHHH---HHHHHH-hccc------c-ccC----CChH
Confidence 00010000000 11111111111111110 111100 0000 0 111 1111
Q ss_pred hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccch
Q 009129 347 SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMT 426 (543)
Q Consensus 347 ~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (543)
....+..+..+....+.. .+.+| .++++.+..+.++.+++.+...... ...
T Consensus 359 ~~~~~~~~~~i~~~~~~~----~l~dr-------~grr~~~~~~~~~~~~~~l~~~~~~------------------~~~ 409 (505)
T TIGR00898 359 LDLFISGLVELPAKLITL----LLIDR-------LGRRYTMAASLLLAGVALLLLLFVP------------------VDL 409 (505)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHH-------hCCHHHHHHHHHHHHHHHHHHHHcC------------------CCc
Confidence 111122222222222222 24444 3344566777777777666555431 012
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcc
Q 009129 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRG 506 (543)
Q Consensus 427 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~ 506 (543)
.++.....++.+++.....+..+.+..|.+|++.|++++|+.+....+|+++++.+.+ +.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~----------------- 471 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK----------------- 471 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-----------------
Confidence 2334444556666777777888999999999999999999999999999999999888 4321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhceeecccC
Q 009129 507 HLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATG 540 (543)
Q Consensus 507 ~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (543)
+....+++++++.+++.++.+ +.+++++++.++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 472 WLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 112346666777776665544 456777766654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=217.88 Aligned_cols=379 Identities=13% Similarity=0.060 Sum_probs=241.4
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchh-----hhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVT-----ASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII 80 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~-----~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~ 80 (543)
...+++..++..+++....+.++.|.+ ++|.+..+ .+++.+++.+...++.++.|+++||+ |||+.+..+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence 344557777888888888888888885 58888655 48888999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 81 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
..++.+++...++ .+.+++.|++.|++.+ ..+...+++.|..|+++ |+++.++.
T Consensus 94 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (408)
T PRK09874 94 MGIVMVLMGLAQN-------------------IWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTL 147 (408)
T ss_pred HHHHHHHHHHHhh-------------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHH
Confidence 9988888777643 7888999999999855 56888889999999888 99999999
Q ss_pred hhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCc
Q 009129 161 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPAD 240 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (543)
+...++|..++|.+++++.+..+|++.|++.++..++..+......++.+. +++++.....
T Consensus 148 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----------------- 208 (408)
T PRK09874 148 STGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEMLHM----------------- 208 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhHH-----------------
Confidence 999999999999999999888899999999887666555444333332110 0000000000
Q ss_pred chhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHHhHHHHhhc
Q 009129 241 KSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFATVY 319 (543)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (543)
+ +.... .++++........ ...........
T Consensus 209 ----------~------------------~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T PRK09874 209 ----------R------------------EVVTS---------------------LKNPKLVLSLFVTTLIIQVATGSIA 239 (408)
T ss_pred ----------H------------------HHHHh---------------------CcCCchHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0000000001000 00001100000
Q ss_pred cCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 009129 320 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV 399 (543)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 399 (543)
..++.+. . ....... ......+.+.....+..++..+ ..++..+| .++++.+..+..+..++.+
T Consensus 240 ~~~~~~~-~---~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~--------~~g~l~dr---~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 240 PILTLYV-R---ELAGNVS-NIAFISGMIASVPGVAALLSAP--------RLGKLGDR---IGPEKILITALIFSVLLLI 303 (408)
T ss_pred HHHHHHH-H---HHhccch-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhc---cccchhHHHHHHHHHHHHH
Confidence 0000000 0 0000000 0000001111111122222222 23333333 4555666666666655554
Q ss_pred HHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 009129 400 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS 479 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~ 479 (543)
..... .+.+...+..++.+++.+...|...+...+..|++.||+..++.+....+|..+|
T Consensus 304 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g 363 (408)
T PRK09874 304 PMSFV--------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG 363 (408)
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence 44332 1334455566778899888899999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 480 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
+.+.+.+.+.. ++...|++.+++.+++.++.+...|+
T Consensus 364 p~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 364 PLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887632 23456788888888777666554433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=210.71 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=139.4
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIAS-FSIIYCLGMTLL 88 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~-~~~~~~i~~~~~ 88 (543)
++..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999999 99887665 455555666677
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccce--eehhhhhHhH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF--FNWFYLSINI 166 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~l 166 (543)
+.+++ .+.+++.|+++|.+.+...|...++..|..|+++ |.+. .+..+...++
T Consensus 82 ~~~~~-------------------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 136 (375)
T TIGR00899 82 AWNRN-------------------YFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISL 136 (375)
T ss_pred Hhcch-------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhH
Confidence 66643 6778888988888888888888888888887665 5543 5677778899
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
|..+||.+++++.+.+|||+.|++.++..++..+....
T Consensus 137 g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 137 AWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999988766555544443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=211.86 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=147.2
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
|+....+....++.....|...+.++. +.+++|.|+.+.++..+.+.++..++.++.|+++||+ ||||++..+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~ 96 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHH
Confidence 344444455555555566666666655 5678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.+.++++ .+.+++.|+++|++.|...|...+++.|++|+++ |++++++...
T Consensus 97 ~~~~~~~~~~~-------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~ 151 (394)
T PRK10213 97 LSCLLVSFANS-------------------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFG 151 (394)
T ss_pred HHHHHHHHHCh-------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHH
Confidence 99988888754 8899999999999999999999999999999888 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
..++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus 152 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 152 AVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=219.98 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=129.0
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
.....+++++|.|.++.|++.+.+.+++.++.+++|+++||+ ||||++..+.++..++.+..+.....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~----------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS----------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 345667889999999999999999999999999999999999 99999999888888777666553100
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc---
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV--- 182 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~--- 182 (543)
...+...+++.|+++|++.+...|...++++|++|+++ |+++++++....++|..+++.+..++.+..
T Consensus 118 ---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~ 188 (467)
T PRK09556 118 ---GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDG 188 (467)
T ss_pred ---ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccC
Confidence 01248889999999999999999999999999999999 999999999999999999999887776543
Q ss_pred ccchhhhHHHHHHHHHHH
Q 009129 183 GWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 183 g~~~~f~i~~~~~~i~~~ 200 (543)
+|+..|.+.++..++..+
T Consensus 189 ~~~~~f~~~g~~~~~~~i 206 (467)
T PRK09556 189 HVIGMFIFPSIIALIIGF 206 (467)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 588888887765544433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=217.06 Aligned_cols=394 Identities=11% Similarity=0.088 Sum_probs=249.8
Q ss_pred hhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHH
Q 009129 43 SNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYL 122 (543)
Q Consensus 43 ~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (543)
+.+++++.++.+++++.+|+++||+ |||+.++++.++..++.++..++... ....+++++|++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~----------------~~~e~li~GR~i 125 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA----------------PSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHH
Confidence 6668889999999999999999999 99999999999999988888777542 348899999999
Q ss_pred HHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH--HhhcccccchhhhHHHHHHHHHHH
Q 009129 123 IALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV--WIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 123 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~--~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
.|+..|......+.++.|..|++- ||..-.....+.++|.+++..++. .+...-.|++.+....+..++.++
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999965552 233455699888888776665555
Q ss_pred HHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhh-hhhhhhhcccCcccccCcccchhh-h-hhhhhc
Q 009129 201 FFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE-TADEECNIQGSRKLESTSKFKFFD-K-AAVETQ 277 (543)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 277 (543)
.+.+ .||||++++. ++++|++++..+.....+.....+ . ..+...
T Consensus 200 ~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~ 247 (485)
T KOG0569|consen 200 LLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE 247 (485)
T ss_pred HHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 4433 5778888877 577777766654443332211111 0 011111
Q ss_pred ccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEE--ecccccCCCCCCcccChhhhhccchhH
Q 009129 278 TDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVL--QGNTMDQHMGPNFKIPSASLSLFDTLS 355 (543)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 355 (543)
.+..++....+++..+++ ..|+.+...+.+... .|+...... +...+-... |+....+.........
T Consensus 248 ~~~~~~~~~sl~~~~~~~-~lR~~~~i~~~v~~~--------qq~sGi~ai~~Yst~i~~~a--G~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 248 EELEKKKQISLRQLLKNP-TLRRPLLIGIVVSFA--------QQFSGINAIFFYSTSIFKTA--GFTPEEAQYANLGIGI 316 (485)
T ss_pred hccccccCCcHHHHhcCc-chhHHHHHHHHHHHH--------HHhcCcceeHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 100000111111111110 112211111111111 122222111 111111221 3333222322222222
Q ss_pred HHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHH
Q 009129 356 VIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYF 435 (543)
Q Consensus 356 ~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 435 (543)
+.+...+. ...+.+| .+++..+..+..++.+..+.+.......... .+...+..+.+.+
T Consensus 317 v~~~~t~~---~~~lid~-------~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~y~~i~~~~ 375 (485)
T KOG0569|consen 317 VNLLSTLV---SPFLIDR-------LGRRPLLLISLSLMAVALLLMSIALFLSNSF-----------GSWLSYLCIAAIF 375 (485)
T ss_pred HHHHHHHH---HHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHH
Confidence 22222222 2224555 4444667777777777666555433221100 0112222344455
Q ss_pred HHHHHHHHh-hhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHH
Q 009129 436 IVGCAEVFT-FIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWL 514 (543)
Q Consensus 436 l~g~g~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~ 514 (543)
++.++..+. .|..+-+.+|++|++.|+.++++..+.+++++++-....+.+.+..|. ++|+.
T Consensus 376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-----------------~~fil 438 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-----------------YVFIL 438 (485)
T ss_pred HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------hhhHH
Confidence 555555554 699999999999999999999999999999999999999999875541 56889
Q ss_pred HHHHHHHHHHHHHHHHhhceeecccC
Q 009129 515 LTILSVLNFLVYLWIAKWFTYKKATG 540 (543)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 540 (543)
+.+.+.+..+..+...+|+|+|+-+|
T Consensus 439 F~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 439 FVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred HHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 99999999999999999999887543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=215.46 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=128.1
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchh-hhhh-----HHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVT-ASNN-----VTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~-~~~~-----~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
...+..+++.+- +++..+...++.++++.+..+ .+++ .++..++..+++++.|+++||+ |||+++.++++++
T Consensus 20 ~~~~g~~~~~~d-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~ 97 (490)
T PRK10642 20 AASLGNAMEWFD-FGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIM 97 (490)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 334555555443 445566667888888644322 2222 4566788899999999999999 9999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
+++++++++++++.++.. .....++++|+++|+|.|+..|...++++|++|+++ |+++.++..
T Consensus 98 ~i~~~~~a~~~~~~~~g~-----------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~ 160 (490)
T PRK10642 98 SISTFCIGLIPSYATIGI-----------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLD 160 (490)
T ss_pred HHHHHHHHhcccHHHHHH-----------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHH
Confidence 999999999865221100 011358899999999999999999999999999998 999999988
Q ss_pred hhHhHHHHHHhHHHHHhh--------cccccchhhhHHHHHHH
Q 009129 162 LSINIGALVASSVLVWIQ--------MNVGWGWGFGIPAVAMA 196 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~--------~~~g~~~~f~i~~~~~~ 196 (543)
.+..+|..+|+.+...+. ..+|||++|++.++..+
T Consensus 161 ~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 161 FGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 888888888876654432 25799999999765444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=215.84 Aligned_cols=172 Identities=19% Similarity=0.321 Sum_probs=150.6
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
+++..++..+......+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.+++..++
T Consensus 1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHh
Confidence 35667777778887788887788899999999999999999999999999999999998 99999999999999996666
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
.++++ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++|.
T Consensus 80 ~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 80 AFASN-------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGS 134 (352)
T ss_dssp HHHCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHH
T ss_pred hhhhh-------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhh
Confidence 65432 5589999999999999999999999999999988 9999999999999999
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcC
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
.++|.+++++.+..+||+.|++.++..++..++.....
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence 99999999999889999999999988777766433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=210.73 Aligned_cols=170 Identities=10% Similarity=0.088 Sum_probs=123.8
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhc--CCCchhhhhhHH-----HHHHHHhhhhhhhHHHhhhccchhHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQL--NQGNVTASNNVT-----NWSGTCYITPLIGAFLADSYMGRFWTIASFSII 80 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~s~~~~~~~~~-----~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~ 80 (543)
...+..+++......+....+.++.+++ +.++. .+++.+ +..++..++.++.|+++||+ |||+++..+.++
T Consensus 26 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~~~~ 103 (438)
T PRK09952 26 GSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLTVWM 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 3344445554444433334444555554 56655 455432 33445667888899999999 999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 81 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
+.+++++++++++.++... .....+++.|+++|++.|...|...+++.|++|+++ |+...+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~ 166 (438)
T PRK09952 104 MGIATALIGLLPSFSTIGW-----------WAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGV 166 (438)
T ss_pred HHHHHHHHhcCCcHHHHHH-----------HHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHH
Confidence 9999999999865211000 112358889999999999999999999999999988 99998888
Q ss_pred hhhHhHHHHHHhHHHHHhh--------cccccchhhhHHHHHHH
Q 009129 161 YLSINIGALVASSVLVWIQ--------MNVGWGWGFGIPAVAMA 196 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~--------~~~g~~~~f~i~~~~~~ 196 (543)
+.+..+|..++..+..++. +.+|||++|.+.++..+
T Consensus 167 ~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 167 QVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 8888888888877666654 35799999998876543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=217.10 Aligned_cols=143 Identities=18% Similarity=0.315 Sum_probs=124.4
Q ss_pred CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHH
Q 009129 37 QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVT 116 (543)
Q Consensus 37 ~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (543)
.+..+.+++.+++.++..++.++.|+++||+ |||++++.+.++..++.+++....+. .+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 130 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA----------------LSVEML 130 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc----------------cchHHH
Confidence 3389999999999999999999999999999 99999999999999999888765431 235688
Q ss_pred HHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHH---HHhhcccccchhhhHHHH
Q 009129 117 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL---VWIQMNVGWGWGFGIPAV 193 (543)
Q Consensus 117 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~---~~~~~~~g~~~~f~i~~~ 193 (543)
+++|+++|+|.+...+...++++|.+|+++ |++++++.+...++|..+++.++ +......+||+.|++.++
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 204 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999999999999998 666677899999999666
Q ss_pred HHHHHHHHH
Q 009129 194 AMAIAVVFF 202 (543)
Q Consensus 194 ~~~i~~~~~ 202 (543)
..++.++..
T Consensus 205 ~~~~~~~~~ 213 (481)
T TIGR00879 205 PAGLLFLGL 213 (481)
T ss_pred HHHHHHHHH
Confidence 555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=208.47 Aligned_cols=172 Identities=10% Similarity=0.118 Sum_probs=152.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
+..+.++...+...+..+...+.++. +++++|.|..+.++..+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 45666778888888888877777765 5678999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.++++.+++ .+.+++.|+++|++.+...+...+++.|++|+++ |+++++.....
T Consensus 81 ~~~l~~~~~~-------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 135 (382)
T PRK10091 81 GNAMFTLSSS-------------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSG 135 (382)
T ss_pred HHHHHHHhCc-------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHH
Confidence 9999988754 8899999999999999988988999999998887 89999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
..+|..++|.+++++.+..+||+.|.+.++..++..+..
T Consensus 136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988999999999887655544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=213.05 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=141.9
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
|+..+...+...+.....|.+ +.+..++++++|.|..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 2 WWYVLVGTVIMCFTSGYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG 79 (377)
T ss_pred eEEEeHHHHHHHHHhhHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence 444444444444443445543 4556778889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.++++++ .+.++++|++.|++.+...+.....+.+.+| ++ |+++.++...
T Consensus 80 ~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~ 133 (377)
T TIGR00890 80 LGFTFYAIADS-------------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIG 133 (377)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHH
Confidence 99999988865 8889999999999999888888888888887 45 8999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
..++|..+++.+.+.+.+..|||+.|++.++..++..+...
T Consensus 134 ~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 134 GYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred hcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777777777778999999998876655544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=219.02 Aligned_cols=395 Identities=14% Similarity=0.126 Sum_probs=236.4
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
+++..++..+.. .+.......+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.+++.++.+++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDS-TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHH
Confidence 344444444443 4444555667789999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
+.+++ ...++++|+++|++.+...|...+++.|.+|+++ |++++++++....+|.
T Consensus 85 ~~~~~-------------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~ 139 (485)
T TIGR00711 85 GVAPN-------------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAP 139 (485)
T ss_pred hCcCC-------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHh
Confidence 87754 8889999999999999999999999999999888 9999999999999999
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhh
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETA 248 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (543)
.+||.+++++.++.+||+.|++.+...++..+......++.+.++.++ .|..+............. ..+++
T Consensus 140 ~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~g~~l~~~~~~~~~~------~~~~~ 210 (485)
T TIGR00711 140 ALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASEN---FDFLGLLLLSVGLGSLLY------GLSEG 210 (485)
T ss_pred hhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCC---CcHHHHHHHHHHHHHHHH------HHhhC
Confidence 999999999999999999999988766555544444333321111111 111111110000000000 00000
Q ss_pred hhhhhcccCcccccCcccchh-h------hhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccC
Q 009129 249 DEECNIQGSRKLESTSKFKFF-D------KAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQ 321 (543)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (543)
+++ + .. +.+..... . ......+.. ...|... .+..++++.....+........++.....
T Consensus 211 ~~~--~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
T TIGR00711 211 PER--G----WF-DSNEILILSITGLVAIIAFVVWELT----DDNPLVD--LRLFKYRNFTIGCVYMSLLGLGLYGSFYL 277 (485)
T ss_pred CCC--C----CC-CchHHHHHHHHHHHHHHHHHHHHHc----CCCCccC--HHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00000000 0 000000000 0111100 00001111111111111111111111111
Q ss_pred cceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 009129 322 MSTMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVA 400 (543)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~ 400 (543)
.+.++ ....+ ++. ..+.......++.++..++..+ +.+| .++++.+..|..+.+++...
T Consensus 278 ~p~~~-------~~~~g--~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~~~~~~~~ 337 (485)
T TIGR00711 278 LPLYL-------QQVLG--YTALQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLILYAVGFYW 337 (485)
T ss_pred HHHHH-------HHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHHHHHHHHH
Confidence 11111 11111 111 1122222223333334443333 2333 55556677788877777766
Q ss_pred HHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 009129 401 AGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLST 480 (543)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~ 480 (543)
..+.. ....+.+......++.+++.+...+.......+..|++.||+++|+.++...+|+.+|+
T Consensus 338 ~~~~~----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~ 401 (485)
T TIGR00711 338 RAFTF----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT 401 (485)
T ss_pred HhccC----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55211 01124445555678899999888877788888999999999999999999999999999
Q ss_pred HHHHHhHh
Q 009129 481 LLVTIVTK 488 (543)
Q Consensus 481 ~i~~~~~~ 488 (543)
.+.+.+.+
T Consensus 402 ~i~g~~~~ 409 (485)
T TIGR00711 402 ALITTILT 409 (485)
T ss_pred HHHHHHHH
Confidence 99998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=210.71 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=144.2
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
|+......+..+...+..+.+.... ..+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFS 88 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 3444445566666666555554444 467789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.++++.+ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 89 ~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~ 143 (405)
T TIGR00891 89 AGTLACGFAPG-------------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLIS 143 (405)
T ss_pred HHHHHHHHhcc-------------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHH
Confidence 99988887754 7888999999999999999999999999999988 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccc--cchhhhHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVG--WGWGFGIPAVAMAIA 198 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g--~~~~f~i~~~~~~i~ 198 (543)
..++|..+++.+++.+.+..+ ||+.|.+.++..++.
T Consensus 144 ~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 144 GYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999887666 999998866544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=212.91 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=146.7
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
|+..+.+++..++.. .......+....+++++|.|..+.|++.+++.++..+++++.|+++||+ ||||++..++++..
T Consensus 7 ~~~~~~~~~~~~~~~-~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 7 RRLIIFLFILFIFSF-LDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWG 84 (412)
T ss_pred hHHHHHHHHHHHHHH-hhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHH
Confidence 333333444334333 3333444555689999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.++++++ ...++++|++.|++.+...|...++++|++|+++ |++++++++.
T Consensus 85 ~~~~~~~~~~~-------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~ 139 (412)
T TIGR02332 85 IASTATMFATG-------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMI 139 (412)
T ss_pred HHHHHHHHhcC-------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 99999998754 7889999999999999999999999999999988 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhc------ccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 163 SINIGALVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
..++|..+++.+++++.+ ..|||+.|.+.++..++..++.....+
T Consensus 140 ~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 140 AMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999998864 369999999987766554444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=213.21 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=141.3
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
+..+...+..+...+..+.. .....++++++|.|+.+.++..+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~ 95 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSV 95 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence 33344444455554444443 4455567789999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+.++++++ .+.++++|++.|+|.|...+...+++.|.+|+++ |+++.++.+.+
T Consensus 96 ~~~~~~~~~~-------------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~ 150 (426)
T PRK12307 96 GTGLSGLASG-------------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSG 150 (426)
T ss_pred HHHHHHHHhH-------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHH
Confidence 9999888754 8899999999999999999999999999999998 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVA 194 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~ 194 (543)
.++|..+++.+.+++.+..+||+.|++....
T Consensus 151 ~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 151 FGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999998889999999886543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-22 Score=205.59 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=138.9
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+.+.++..+++..++...+...++.. .+++|.+..+.+++.+.+.+...++.|++|+++||+ ||||+++.+.+++.+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 455667778888877666655555544 578999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+.+..+.+ . ++.|+++|++.+...|+..+++.|.+|+++ |++++++....
T Consensus 81 ~~~~~~~~~~-------------------~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~ 132 (393)
T PRK11195 81 GCLLMLFGIH-------------------P---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGS 132 (393)
T ss_pred HHHHHHHHHH-------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 8887766532 2 678999999999999999999999999988 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAV 199 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~ 199 (543)
.++|..+||.++|++.+. .|+..+.+.+...+++.
T Consensus 133 ~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 133 TIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999875 47777666655444443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=209.67 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=126.6
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhcC---CCchhhhhhHHHH---HHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQLN---QGNVTASNNVTNW---SGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~---~s~~~~~~~~~~~---~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
.+++..... ..+++..++.++++ .+..+.+.+.+.+ .++..++++++|+++||+ ||||++..+.+++.++++
T Consensus 31 ~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 31 NLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 444444433 36677778888874 4555444444444 444459999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.++++++...+. ..+...+++.|+++|+|.|+..|...++++|++|+++ |+++.++.+...+.
T Consensus 109 ~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~ 171 (432)
T PRK10406 109 VIACLPGYETIG-----------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIG 171 (432)
T ss_pred HHhhcCCchhHH-----------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHH
Confidence 998875421100 0124578899999999999999999999999999988 99999998888888
Q ss_pred HHHHHhHHHHHhh--------cccccchhhhHHHHHHHHH
Q 009129 167 GALVASSVLVWIQ--------MNVGWGWGFGIPAVAMAIA 198 (543)
Q Consensus 167 g~~l~~~i~~~~~--------~~~g~~~~f~i~~~~~~i~ 198 (543)
|..+++.+...+. ..+|||++|++.++..++.
T Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 172 GQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8888877665543 2579999999877655443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-24 Score=222.64 Aligned_cols=365 Identities=40% Similarity=0.658 Sum_probs=239.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccc
Q 009129 71 FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGER 150 (543)
Q Consensus 71 k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 150 (543)
.|+++++.+++.+|++++.++...+.. +++.+...++++..+.++|.|++.|+..++++||+++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~-- 68 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS-- 68 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT--
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh--
Confidence 378999999999999998887653221 23345778999999999999999999999999999987522
Q ss_pred ccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceecc-CCCCChHHH-HHHHHHH
Q 009129 151 EKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ-KPGGSPLTR-IMQVIVA 228 (543)
Q Consensus 151 ~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 228 (543)
+|.++++++|+++|+|..+++.+.+++.+++||.+.|+++++.++++++.+...+++++++ ++++++..+ ...++..
T Consensus 69 -~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 147 (372)
T PF00854_consen 69 -RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVA 147 (372)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHH
T ss_pred -hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHH
Confidence 2899999999999999999999999999999999999999999999999999998888777 666666666 4445555
Q ss_pred HHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCc-ccchhhHHHHHHHHHHHH
Q 009129 229 SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWR-LCTVTQVEELKAIIRLLP 307 (543)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 307 (543)
..+++....|.+..+..+..+... ... .. ............... ...|. .++++++++.|.+.+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~k~~~~~~~ 215 (372)
T PF00854_consen 148 AFKKRKLAVPKGSSWLDWALFQYS-ERS---IF--GIIVFIRAAVIFFPE------IFFWALFCQVQRVEELKALIRFLP 215 (372)
T ss_dssp HHHHHCCCH-HHHHHHHHHHHHHC-CCC---CC--CCCCHHHHHHHHCCC------HHHHTTTSSTTTHHHCCHHHCHHH
T ss_pred HHHHhhcccccchHHHHHhhhhhh-hhh---hh--hhhhhccchhhhhhh------hhhcccCCccceeeeeeeeeeccc
Confidence 556555555533333333322111 000 00 000000000000000 00111 022344556666666666
Q ss_pred HHHHhHHHHhhccCcceEEEEecccccCCCCCC-cccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHH
Q 009129 308 VWASGIVFATVYSQMSTMFVLQGNTMDQHMGPN-FKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQR 386 (543)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 386 (543)
.+.+...+.....+...+...+...++.... + +.+|++.++.++.+.++++.|+.+++++|+.++ ..+ .+...+
T Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~~---~~~~~k 290 (372)
T PF00854_consen 216 IFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GIQ---PSPPQK 290 (372)
T ss_dssp CCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHH
T ss_pred cCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-ccc---chhhhh
Confidence 6666677777777766666666666666666 5 889999999999999999999999999999983 333 778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHH
Q 009129 387 MGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 466 (543)
Q Consensus 387 i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 466 (543)
+.+|++++.+++.....++.+|....++++ ..+.+|.+..+++..++|.+..+...+..+|.+|++..+..+|
T Consensus 291 ~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~ 363 (372)
T PF00854_consen 291 FGIGMVFAILAMFVAAIVEIRRLCYAQPCG-------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMG 363 (372)
T ss_dssp HHHH-HHHHHHHHTTTHHHH---HH----T-------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccccC-------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHH
Confidence 999999999999988888776554444444 2344677799999999999999999998888888777777777
Q ss_pred HHHHHH
Q 009129 467 LSLTTV 472 (543)
Q Consensus 467 ~~~~~~ 472 (543)
+++...
T Consensus 364 ~~~~~~ 369 (372)
T PF00854_consen 364 IWFALS 369 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=201.50 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhHhHHHhHHHH---HHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNL---VNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
.+-++...++...+||-+--++ .+++.++.++|.+|.|.+.+++.+++.++-++.|.++||. +.|+.+-.++++.+
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence 4457778888888999876654 4788899999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+..++.+++++ ...+.+..++.|..+|.-.|.+...++.++++++ ||+..++++.
T Consensus 106 i~nil~Gfs~s-------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~ 160 (448)
T COG2271 106 IVNILFGFSPS-------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNT 160 (448)
T ss_pred HHHHHHhhhhH-------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehh
Confidence 99999999865 8889999999999999999999999999999999 9999999999
Q ss_pred hHhHHHHHHhHHH--HHhhcccccchhhhHHHHHHHHH-HHHHHhc
Q 009129 163 SINIGALVASSVL--VWIQMNVGWGWGFGIPAVAMAIA-VVFFFSG 205 (543)
Q Consensus 163 ~~~lg~~l~~~i~--~~~~~~~g~~~~f~i~~~~~~i~-~~~~~~~ 205 (543)
+.|+|+.+.|++. +++..+.+||..|++++++.++. ++++...
T Consensus 161 shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred hhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 99998889999999999865544 4444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=202.70 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=146.0
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
.+.+..+...++.....+.++ .+++++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.+..+.++..++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHH
Confidence 344444445555555555554 46788999999999999999999999999999999999 9999999999999999998
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHH
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
+..+++ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++|
T Consensus 87 ~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 141 (385)
T TIGR00710 87 LALSNN-------------------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALA 141 (385)
T ss_pred HHHHcc-------------------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHH
Confidence 887754 7888999999999999999999999999999888 999999999999999
Q ss_pred HHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcC
Q 009129 168 ALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 168 ~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
..++|.+++++.++.+|++.|++.++..++..+......
T Consensus 142 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 142 PAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999889999999988776655555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=200.64 Aligned_cols=346 Identities=19% Similarity=0.262 Sum_probs=250.6
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+++..++..+.++...+..+.+. +++|.+..+.+++.+...++..++.++.|+++||+ ||||.+..+..+..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 3456677788888888888888877 56799999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+...++ .+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++
T Consensus 80 ~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 80 LLAFASS-------------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 9888743 7889999999999999999999999999999988 99999999999999
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhh
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYE 246 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (543)
|..++|.+++.+.+..+|++.|.+.++..++..+...... +.
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~------------------------- 176 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RL------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------------------------
Confidence 9999999999999988999999988876665554433221 00
Q ss_pred hhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHHhHHHHhhccCcceE
Q 009129 247 TADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFATVYSQMSTM 325 (543)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 325 (543)
+...... ..............+.+
T Consensus 177 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T cd06174 177 -------------------------------------------------------LLLLALAFFLLSFGYYGLLTYLPLY 201 (352)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0000000 00000000000000000
Q ss_pred EEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchH-HHHHHHHHHHHHHHHHHHH
Q 009129 326 FVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQ-RMGIGLLISIFSMVAAGIL 404 (543)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~-~i~~g~~l~~~~~~~~~~~ 404 (543)
. ....+ ......+.......+...+..++..+ +.+|.++ ++ .+..+..+..++.......
T Consensus 202 ~-------~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 202 L-------QEVLG-LSAAEAGLLLSLFGLGGILGALLGGL----LSDRLGR-------RRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred H-------HHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHh-------hhHHHHHHHHHHHHHHHHHHHh
Confidence 0 00000 00011222233333344444444433 4455333 34 5677777777777766653
Q ss_pred HHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009129 405 EVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVT 484 (543)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~ 484 (543)
.+.+...+..++.+++.+...+...++..|..|++.|++.+|+.+....++..+++.+.+
T Consensus 263 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 263 --------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred --------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135566777889999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009129 485 IVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYL 527 (543)
Q Consensus 485 ~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~ 527 (543)
.+.+.. ++...+.+.+++.+++.+...
T Consensus 323 ~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 323 LLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 988521 223556777777777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=212.25 Aligned_cols=148 Identities=12% Similarity=0.171 Sum_probs=130.8
Q ss_pred hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchH
Q 009129 34 QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQT 113 (543)
Q Consensus 34 ~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (543)
+++++..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++..+.+ .+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence 6889999999999999999999999999999999 9999999999999988888765532 126
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc-ccchhhhHHH
Q 009129 114 AVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV-GWGWGFGIPA 192 (543)
Q Consensus 114 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~-g~~~~f~i~~ 192 (543)
..+++.|+++|++.+...|....+++|++|+++ |++++++.+.+.++|..++|.+++++.+.. |||+.|++.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 678999999999999999999999999999998 999999999999999999999999998884 9999999988
Q ss_pred HHHHHHHHHHHhc
Q 009129 193 VAMAIAVVFFFSG 205 (543)
Q Consensus 193 ~~~~i~~~~~~~~ 205 (543)
+..++..+.++..
T Consensus 206 ~~~~~~~~~~~~~ 218 (465)
T TIGR00894 206 IVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 7665554444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=203.78 Aligned_cols=156 Identities=12% Similarity=0.048 Sum_probs=138.6
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+.+++..++..+....+.+.++.|.+ ++|.|..++|++.+.+.++..+++++.|+++||+ ||||++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45667788888888888888888888875 6899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+...++.+++ .+.++++|+++|++.+...|...+.+.+..++++ |++++++++..
T Consensus 84 ~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 138 (381)
T PRK03633 84 GCAGLGLMVG-------------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMV 138 (381)
T ss_pred HHHHHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence 9988888754 8889999999999999998988888889888877 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccch
Q 009129 164 INIGALVASSVLVWIQMNVGWGW 186 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~ 186 (543)
.++|..+||.+++++.+...++.
T Consensus 139 ~~~g~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 139 YYLGTVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHHHHHhcccccccchH
Confidence 99999999999999877543433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=199.08 Aligned_cols=368 Identities=13% Similarity=0.061 Sum_probs=236.8
Q ss_pred CCcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHH----HH
Q 009129 1 MPLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI----AS 76 (543)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l----~~ 76 (543)
|.+++.+.+.+..++...++-...++++.|++ ++|.|..++|++.+.+.++..+++++.|.++||+ ||++.. ..
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~ 78 (382)
T TIGR00902 1 MQLQPFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLAL 78 (382)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHH
Confidence 45677777777778887777778889999985 6899999999999999999999999999999999 985433 22
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccce
Q 009129 77 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF 156 (543)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 156 (543)
+..++.+ ..+..++ +.+.+++.|.+++.+.+...|...++..+. +++ |++.
T Consensus 79 ~~~l~~~--~~~~~~~-------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~ 129 (382)
T TIGR00902 79 ASAIFAA--AFSAGAH-------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLD 129 (382)
T ss_pred HHHHHHH--HHHHhhh-------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCC
Confidence 2222222 1222332 378888999999999999999988887653 344 8889
Q ss_pred eehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccc
Q 009129 157 FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVV 236 (543)
Q Consensus 157 ~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
++......++|..++|.+++++.+++|||..|.+.....++.++. ....++. ++++++.+
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~---------------- 189 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTI---PPKDAIPE---------------- 189 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCC---CCCccccc----------------
Confidence 999999999999999999999999999999988876543332222 2222211 01000000
Q ss_pred cCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHH-HHHHhHHH
Q 009129 237 VPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP-VWASGIVF 315 (543)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 315 (543)
++ ..+.... .+..+.|+++.... ........
T Consensus 190 -------------~~----------~~~~~~~-------------------------~~~l~~~~~~~~l~~~~l~~~~~ 221 (382)
T TIGR00902 190 -------------DE----------SQGDSAF-------------------------IALLKNPMNLRFLAAVCLIQGAH 221 (382)
T ss_pred -------------cc----------cccchhH-------------------------HHHHcChHHHHHHHHHHHHHHHH
Confidence 00 0000000 00011122222211 11112222
Q ss_pred HhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 009129 316 ATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 395 (543)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 395 (543)
...+...+.+. . + .+ .++...+....+ ..+...+...+.+|..+| ++.++.+.++.++..
T Consensus 222 ~~~~~~~~~~l-~-----~--~g----~s~~~~g~l~~~-----~~~~~i~~~~~~~~l~~r---~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 222 AAYYGFSAIYW-Q-----A--AG----ISASATGLLWGI-----GVLAEIIIFAFSNKLFQN---CSARDLLLISAIACV 281 (382)
T ss_pred HHHHHHHHHHH-H-----H--CC----CCHhHHHHHHHH-----HHHHHHHHHHHhHHHHhh---CCHHHHHHHHHHHHH
Confidence 22222111111 1 1 12 223333322111 222222223344454555 777788889999999
Q ss_pred HHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHH-HHHHH
Q 009129 396 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAV 474 (543)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~i 474 (543)
+.....++. .+.+.++...++.+++.+...+....++.+. |++.|++++++++ ...++
T Consensus 282 ~~~~~~~~~--------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 282 GRWAIIGAI--------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGG 340 (382)
T ss_pred HHHHHHHhH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHH
Confidence 888777654 2556666678999999999999999999988 9999999999987 57789
Q ss_pred HHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 009129 475 GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLV 525 (543)
Q Consensus 475 g~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~ 525 (543)
|..+++.+.|.+.+..+ . ..|+..+++.++++++
T Consensus 341 g~~~g~~~~G~l~~~~g----------------~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLG----------------A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhcc----------------H-HHHHHHHHHHHHHHHH
Confidence 99999999999987432 1 3467777777766433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=207.41 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=133.1
Q ss_pred HHHHHHHHHhHhHHHh---HHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGM---STNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~---~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
.++...++....+|.. ......+++++ |.|..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHH
Confidence 3344444444444433 23444577777 99999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+++... ...+...+++.|++.|++.|...|.....+.|++|+++ |++++++++.+.
T Consensus 107 ~~~~~~~~~---------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 165 (452)
T PRK11273 107 MLFMGFVPW---------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAH 165 (452)
T ss_pred HHHHHhhhc---------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHH
Confidence 888877632 01236778889999999999999988899999999988 999999999999
Q ss_pred hHHHH-HHhHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 009129 165 NIGAL-VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 165 ~lg~~-l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~ 201 (543)
++|.. .+|+++..+....+||+.|++.++..++..++
T Consensus 166 ~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 166 NVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 98864 55655433433458999999987665554333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=201.48 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=135.4
Q ss_pred hHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 009129 23 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD 102 (543)
Q Consensus 23 ~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 102 (543)
.......++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+++..+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 104 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALATN--------- 104 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHccc---------
Confidence 444455567788999999999999999999999999999999999 9999999999999998888877643
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc
Q 009129 103 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~ 182 (543)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++++.+..
T Consensus 105 ----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (398)
T TIGR00895 105 ----------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168 (398)
T ss_pred ----------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence 7788899999999999999999999999999888 999999999999999999999999999989
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 009129 183 GWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 183 g~~~~f~i~~~~~~i~~~~~ 202 (543)
||+..|++.++..++..+..
T Consensus 169 g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 169 GWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred cceeehhhhhhHHHHHHHHH
Confidence 99999998865444443333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=199.98 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=132.6
Q ss_pred HhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCC
Q 009129 31 LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTG 110 (543)
Q Consensus 31 l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (543)
+.++++.|.++.++..+++.++..+++++.|+++||+ |||++++.+.++..++.+.+..+++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~----------------- 103 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTTS----------------- 103 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcCC-----------------
Confidence 6678999999999999999999999999999999999 9999999999999999999988754
Q ss_pred chHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhH
Q 009129 111 AQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGI 190 (543)
Q Consensus 111 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i 190 (543)
...++++|+++|++.+...+...+++.|.+|+++ |++++++.....++|..+||.+++++.++.|||+.|++
T Consensus 104 --~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 104 --MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8889999999999998777777888999999888 99999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHh
Q 009129 191 PAVAMAIAVVFFFS 204 (543)
Q Consensus 191 ~~~~~~i~~~~~~~ 204 (543)
.++..+++.+....
T Consensus 176 ~~~~~~i~~~~~~~ 189 (413)
T PRK15403 176 IAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766665554333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=200.82 Aligned_cols=172 Identities=9% Similarity=0.096 Sum_probs=141.1
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
+|-.+..++..++.....+..-..+ ..+.+++|.|..+.+++.+.+.++..++.+++|+++||+ ||||++..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~ 83 (394)
T PRK03699 6 IKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 3344444455555555544444444 446789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+++.++++ .+.+++.|+++|++.|...+...+++.|.+|+++ |+++++..+.
T Consensus 84 i~~~l~~~~~~-------------------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~ 138 (394)
T PRK03699 84 LAVAGLMFSHS-------------------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDS 138 (394)
T ss_pred HHHHHHHHcch-------------------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHH
Confidence 99988888743 7788999999999999999999999999999887 9999988888
Q ss_pred hHhHHHHHHhHHHHHhhc-ccccchhhhHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQM-NVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~-~~g~~~~f~i~~~~~~i~~~~ 201 (543)
..++|..++|.+.+++.. ..|||++|.+.++..++..++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 139 FFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 888999999998888754 579999999877665544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=197.18 Aligned_cols=168 Identities=14% Similarity=0.064 Sum_probs=141.4
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
||+.....+.+++..++.+...++++.++ +++|.|..+.++..+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWC 89 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence 56777788888888888888888888888 57899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.+..... ...+...+++.|+++|+|.+...+...+.+.+.+|+++ |++++++.+.
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 148 (402)
T TIGR00897 90 VGHAAFIVFGL---------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWA 148 (402)
T ss_pred HHHHHHHHHhc---------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence 88766532111 00236777889999999998888888888999999888 9999999999
Q ss_pred hHhHHH-HHHhHHHHHhhcccccchhhhHHHH
Q 009129 163 SINIGA-LVASSVLVWIQMNVGWGWGFGIPAV 193 (543)
Q Consensus 163 ~~~lg~-~l~~~i~~~~~~~~g~~~~f~i~~~ 193 (543)
..++|. .++|.+++++.+.+||+..++....
T Consensus 149 ~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 149 VYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999996 5899999999888897666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=204.49 Aligned_cols=398 Identities=8% Similarity=-0.047 Sum_probs=226.8
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
+.+..+.+....++..+++..+.++++.|+++++|+|..++|++.+.+.++..+++++.|+++||+ ||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~ 86 (420)
T PRK09528 8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGL 86 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 456667777888888898999999999999999999999999999999999999999999999999 9999998877766
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++..........+. . ......+.++.++..+...+...+.+.++.++..+ +++..++..+
T Consensus 87 ~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~ 147 (420)
T PRK09528 87 LVLFGPFFIYVFAPL--------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGRAR 147 (420)
T ss_pred HHHHHHHHHHHHHHH--------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchhhH
Confidence 554432221100000 0 00111222223333333333333333333322111 1677888888
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcc
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADK 241 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (543)
...++|..++|.+++++.+ .+|+..|++.++..++.++..+..+++.+++ ++.+
T Consensus 148 ~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------------ 201 (420)
T PRK09528 148 MWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVA------------------------ 201 (420)
T ss_pred HhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhc------------------------
Confidence 8899999999999999876 5899999988776665555544433321110 0000
Q ss_pred hhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHH-HHhHHHHhhcc
Q 009129 242 SLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVW-ASGIVFATVYS 320 (543)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 320 (543)
++++..+ +.....+.... .+ .+.+....... .....+.....
T Consensus 202 -------~~~~~~~--------~~~~~~~~~~~---------------------l~-~~~~~~l~l~~~~~~~~~~~~~~ 244 (420)
T PRK09528 202 -------NALGANA--------SAVSLKDALAL---------------------LK-LPKFWFLVLYVIGVACFYDVFDQ 244 (420)
T ss_pred -------cchhccc--------ccccHHHHHHH---------------------cc-CCCeEeehHHHHHHHHHHHHHHH
Confidence 0000000 00000000000 00 00010011111 11111111111
Q ss_pred CcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 009129 321 QMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVA 400 (543)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~ 400 (543)
+.+.++.... .+...+ ....+.+.....+...+..++.++ +.+| .++++.+..+.++.+++.+.
T Consensus 245 ~~~~~~~~~~--~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~----l~dr-------~g~~~~~~~~~~l~~~~~~l 308 (420)
T PRK09528 245 QFPNFFASFF--ATPEQG---TRVFGYLNSFQVFLEALIMFFAPF----IINR-------IGAKNALLLAGTIMAVRIIG 308 (420)
T ss_pred HHHHHHHHHH--hccCcc---hHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcchhhHHHHHHHHHHHHH
Confidence 2121111000 000100 000112222222222333333322 4444 44445567777777777666
Q ss_pred HHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHH-HHHHHHHHHHHH
Q 009129 401 AGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVGNYLS 479 (543)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~~l~ 479 (543)
.++. .+.++++...++.+++.....+...+++.+..|++.|++..++ +++...+|+.++
T Consensus 309 ~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig 368 (420)
T PRK09528 309 SGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFL 368 (420)
T ss_pred HHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHH
Confidence 6543 1344556667778888877778888899999999999988766 677889999999
Q ss_pred HHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhce
Q 009129 480 TLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534 (543)
Q Consensus 480 ~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~ 534 (543)
+.+.+.+.+..+ +...|...+++.++..++.++..++.+
T Consensus 369 ~~~~G~l~~~~G----------------~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 369 STLAGNLYDSIG----------------FQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHhhC----------------chHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999987432 235677777777777666666555544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=210.04 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=129.1
Q ss_pred HHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 009129 27 LVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC 106 (543)
Q Consensus 27 l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 106 (543)
....+++++|.|..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.++++++++
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------- 106 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN------------- 106 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh-------------
Confidence 34456689999999999999999999999999999999999 9999999999999999988888754
Q ss_pred CCCCchHHHHHH-HHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccc
Q 009129 107 HPTGAQTAVTFV-ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 107 ~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~ 185 (543)
.+.+++ .|++.|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.+++++.+.+|||
T Consensus 107 ------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr 173 (455)
T TIGR00892 107 ------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR 173 (455)
T ss_pred ------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence 555554 4688999999876777788889885 56 999999999999999999999999999989999
Q ss_pred hhhhHHHHHHHHHHHHHHhc
Q 009129 186 WGFGIPAVAMAIAVVFFFSG 205 (543)
Q Consensus 186 ~~f~i~~~~~~i~~~~~~~~ 205 (543)
++|++.++..++..+...+.
T Consensus 174 ~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 174 GSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999987766555444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=197.84 Aligned_cols=170 Identities=16% Similarity=0.097 Sum_probs=141.5
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+......++.........+.++ ++.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||.+..+..+..+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 85 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence 3344444555555555555555554 45678999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+.+..+++ .+.+++.|++.|++.+...+....+..|.+++++ |+++.++...+
T Consensus 86 ~~~~~~~~~~-------------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 140 (394)
T PRK11652 86 GTLVALFAHS-------------------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMG 140 (394)
T ss_pred HHHHHHHHcc-------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHH
Confidence 9888877643 7888999999999999888888888999988877 89999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
..+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999888999999988765544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=199.69 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=136.1
Q ss_pred HHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 009129 25 TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD 104 (543)
Q Consensus 25 ~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 104 (543)
.....++++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.++++++++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------- 82 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS----------- 82 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh-----------
Confidence 3344578889999999999999999999999999999999999 9999999999999999999988754
Q ss_pred CCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHh-HHHHHhhcccc
Q 009129 105 ACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS-SVLVWIQMNVG 183 (543)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~-~i~~~~~~~~g 183 (543)
.+.++++|++.|++.+...|...+++.|.+|+++ |++++++.+...++|..++| .+++.+.+..+
T Consensus 83 --------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 148 (379)
T TIGR00881 83 --------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS 148 (379)
T ss_pred --------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999988 99999999999999999999 57777777789
Q ss_pred cchhhhHHHHHHHHHHHHHHh
Q 009129 184 WGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 184 ~~~~f~i~~~~~~i~~~~~~~ 204 (543)
|++.|++.++..++..+....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 149 WHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred chhHHHHHHHHHHHHHHHHhe
Confidence 999999887665554444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=196.57 Aligned_cols=175 Identities=12% Similarity=0.139 Sum_probs=129.6
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHH-HHhhhhhhhHHHhhhccchhHHHH-HHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSYMGRFWTIA-SFSIIYC 82 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~l~-~~~~~~~ 82 (543)
..+.+.+..++.+++...+.+.++.|+++++|.|.++.|+..+...+ +..+.++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 34566777899999999999999999999999999999999877655 55555655666 9999 9988754 5555555
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHH-HHHHHhhccCCCcchhhhhhcccCCCCccccccc--cceeeh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVA-LYLIALGTGGIKPCVSSFGADQFDETDDGEREKK--SSFFNW 159 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~ 159 (543)
++.++.+++.+ .+.+++. +++.+.+ +...|...++..|..++++ | +...++
T Consensus 94 ~~~~~~~~~~~-------------------~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 147 (393)
T PRK15011 94 LACTLFAWNRN-------------------YFVLLFVGVFLSSFG-STANPQMFALAREHADKTG------REAVMFSSF 147 (393)
T ss_pred HHHHHHHHhhH-------------------HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc------chHHHHHHH
Confidence 66666666643 5555444 4445554 4667888888888776554 4 334467
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
.+...++|..+||.+++++.+++|||..|++.++..++..+......|
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 788899999999999999998899999999888766555544444333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=204.60 Aligned_cols=419 Identities=14% Similarity=0.128 Sum_probs=252.4
Q ss_pred HHhHHHHHHHHhhhcC-----CCc--hhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhc
Q 009129 21 YGMSTNLVNYLQKQLN-----QGN--VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS 93 (543)
Q Consensus 21 ~~~~~~l~~~l~~~l~-----~s~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~ 93 (543)
.+..+.+..++++... .+. .+.+++.+...+++.++++++|+++|++ |||+.++++.+++.++.++++.+.+
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~ 141 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS 141 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566666666665321 222 3448999999999999999999999999 9999999999999999999999965
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhH
Q 009129 94 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS 173 (543)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~ 173 (543)
..+++++|+++|+|.|+.....+.+++|..|++. ||...+..+...++|..++..
T Consensus 142 -------------------~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 142 -------------------WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred -------------------HHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998 999999999999999999955
Q ss_pred HHHHhhcc-cccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhh
Q 009129 174 VLVWIQMN-VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEEC 252 (543)
Q Consensus 174 i~~~~~~~-~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (543)
++....+. ++||..+.+..+..++..+.++. .||+|+++.++++.++
T Consensus 197 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~--------------------------------~pesp~~L~~~g~~~~ 244 (513)
T KOG0254|consen 197 INYGTSKVYAGWRIPLGLALIPAVILALGMLF--------------------------------LPESPRWLIEKGRLEE 244 (513)
T ss_pred HhhhhccCCccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCChHHHHHcCChHH
Confidence 55444332 48998888877665555544222 3455555555554444
Q ss_pred hcccCcccccCc---ccchhhhhhhhhcccccCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEE
Q 009129 253 NIQGSRKLESTS---KFKFFDKAAVETQTDRVKG-SADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVL 328 (543)
Q Consensus 253 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (543)
++.....+.... .....+............. ....|+.+.. ...+|+......+..++.. ...... ..
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~-----tG~~~~-~~ 316 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQL-----TGINYV-FY 316 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHH-----hCCceE-Ee
Confidence 444333222200 0000000000000000000 0011211111 0122222211111111111 111111 11
Q ss_pred ecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 329 QGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVR 408 (543)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~ 408 (543)
+....-... +...+. ....+....+.+...+.. .-+.+| .+++..+..|...+++++++++......
T Consensus 317 Y~~~if~~~--g~~~~~-~~~~~~~~~v~~~~t~~~---~~lvd~-------~gRr~lll~s~~~m~~~~~~~~~~~~~~ 383 (513)
T KOG0254|consen 317 YSTTIFKSA--GLKSDT-FLASIILGVVNFLGTLVA---TYLVDR-------FGRRKLLLFGAAGMSICLVILAVVGVFA 383 (513)
T ss_pred ehHHHHHhc--CCCCch-HHHHHHHHHHHHHHHHHH---HHHHHH-------hccHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 111121221 222222 222221222222222222 124444 3444778889999999988887664331
Q ss_pred HhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 009129 409 LNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTK 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~ 488 (543)
..... ......+..++..++..........|..+.+..|..|.+.|+++.++....+++.+.+-.........
T Consensus 384 ~~~~~-------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~ 456 (513)
T KOG0254|consen 384 LYYPN-------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE 456 (513)
T ss_pred ccCCC-------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 00012233333334444444455568888899999999999999999999999999888777776664
Q ss_pred hhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHhhceeecccCC
Q 009129 489 VTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFL-VYLWIAKWFTYKKATGR 541 (543)
Q Consensus 489 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 541 (543)
..+ ....|..+++++.+..+ ++++..+|+|+++.||.
T Consensus 457 ~~~----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei 494 (513)
T KOG0254|consen 457 ALG----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEI 494 (513)
T ss_pred hcc----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHH
Confidence 211 12346667777777777 78888999999988764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=202.76 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=132.4
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+......++.....+++.+.+ .++++++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~ 116 (476)
T PLN00028 39 HLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVF 116 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 333444444555555554443 467789999999999999999999999999999999999 999999999999999988
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
+++++.+ ...+++.|+++|++.+... ....+++|++|+++ |++++++.+...++
T Consensus 117 ~~~~~~s-------------------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~~~~~ 170 (476)
T PLN00028 117 CMSLVSS-------------------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAGWGNL 170 (476)
T ss_pred HHHHhcC-------------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHHHHHH
Confidence 8887754 7788889999999988754 45567899999988 99999998887788
Q ss_pred HHHHHhHHHHHhhc---------ccccchhhhHHHHHHHHHHHHHHh
Q 009129 167 GALVASSVLVWIQM---------NVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 167 g~~l~~~i~~~~~~---------~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
|..+++.+.+.+.. ..|||+.|++.++..++..+....
T Consensus 171 g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 171 GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877666654421 258999999988766555444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=194.59 Aligned_cols=162 Identities=15% Similarity=0.225 Sum_probs=136.3
Q ss_pred HhHhHHHhHHHHHHH--HhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhc
Q 009129 16 ERLAYYGMSTNLVNY--LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS 93 (543)
Q Consensus 16 ~~~~~~~~~~~l~~~--l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~ 93 (543)
...+++......|.+ +++++|.|..+.++..+++.++..++.++.|+++||+ |||+++..+.++..++.+.+..+++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~ 93 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVES 93 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444433 6789999999999999999999999999999999999 9999999999999998888887644
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhH
Q 009129 94 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS 173 (543)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~ 173 (543)
.+.+++.|+++|++.+...+...+++.|.+|+++ +++.++......++|..++|.
T Consensus 94 -------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 148 (401)
T PRK11043 94 -------------------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPL 148 (401)
T ss_pred -------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999988888888899999999887 888888888888999999999
Q ss_pred HHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 174 VLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 174 i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
+++++.+.+|||+.|++.++..++..+...
T Consensus 149 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 149 LGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999988766655544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-19 Score=191.24 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=232.8
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccch-hHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSIIYCLGMT 86 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-k~~l~~~~~~~~i~~~ 86 (543)
-+++..|+...++-...++++.|+++++|+|..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 356777888788888889999999999999999999999999999999999999999998 65 7788888888877777
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCC--ccccccccceeehhhhhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD--DGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~ 164 (543)
...+.++ .+.+++.|++.|++.+...|...+...+...+.. ..+...|.+.++
T Consensus 85 ~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------ 139 (418)
T TIGR00889 85 FAAQVTT-------------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------ 139 (418)
T ss_pred HHHHhcC-------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------
Confidence 7776644 7777888888999887777766665433321110 000011555554
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCC-ChHHHHHHHHHHHHhhcccccCCcchh
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGG-SPLTRIMQVIVASFRKSNVVVPADKSL 243 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (543)
.+|..+||.+++.+.....|. +|++.++..++..+.. ...++.+..+.++ .+..+
T Consensus 140 ~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~---------------------- 195 (418)
T TIGR00889 140 TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKV---------------------- 195 (418)
T ss_pred hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHH----------------------
Confidence 478899999998884433344 4556555444444332 2233211100000 00000
Q ss_pred hhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHH-HHHHHhHHHHhhccCc
Q 009129 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL-PVWASGIVFATVYSQM 322 (543)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (543)
+ ...... ...+.+++...+ ..+.............
T Consensus 196 -----~--------------~~~~~~-------------------------~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
T TIGR00889 196 -----M--------------LGLDAF-------------------------ILFKNKRMAIFFFFSMLLGAPLQITNIFG 231 (418)
T ss_pred -----H--------------hhhhHH-------------------------HHhcCCCeeeHHHHHHHHHhHHHHHHHhH
Confidence 0 000000 000000110111 1111111110111000
Q ss_pred ceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHH
Q 009129 323 STMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAA 401 (543)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 401 (543)
+.+ .... ..+.....++.. ..+....+..+..++...+.+ ++.+| +++++.+..+.++.+++...+
T Consensus 232 ~~~-~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g----~l~dr-------~g~r~~l~~~~~~~~v~~~l~ 298 (418)
T TIGR00889 232 NGF-LHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIP----FFLKR-------FGIKKVMLLSLVAWALRFGFF 298 (418)
T ss_pred HHH-HHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHH-------hCcHHHHHHHHHHHHHHHHHH
Confidence 000 0000 000000000000 011222222222223332222 24444 555677888888887776655
Q ss_pred HHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHH-HHHHHHHHHHH
Q 009129 402 GILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAVGNYLST 480 (543)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~l~~ 480 (543)
..... ++...+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ....+|+.+|+
T Consensus 299 ~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp 362 (418)
T TIGR00889 299 AYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGY 362 (418)
T ss_pred HHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 54210 01123445566788999998888999999999999999999999997 67889999999
Q ss_pred HHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeec
Q 009129 481 LLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK 537 (543)
Q Consensus 481 ~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~ 537 (543)
.+.+.+.+..+..+. .+++..|.+.+++.++..++++++.|+.+++-
T Consensus 363 ~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 363 ILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 999999875542110 12456678888888888888888887766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=196.48 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=123.1
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhh-HHHHHHH-----HhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNN-VTNWSGT-----CYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~-~~~~~~~-----~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
.++..+++.+-. .........+.++++.+..+.+.. .+....+ ..+++++.|+++||+ ||||.++.+.+++.
T Consensus 20 ~~~~~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~ 97 (434)
T PRK15075 20 VTSGNFLEMFDF-FLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHH
Confidence 334444443333 334555667888999888776543 3332222 236788999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.++++++++.+.+.. .....++++|+++|++.|...|...++++|++|+++ |++++++...
T Consensus 98 ~~~~l~~~~~~~~~~~~-----------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~ 160 (434)
T PRK15075 98 SGTLLIAFVPGYATIGL-----------AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSA 160 (434)
T ss_pred HHHHHHHhCCcHHHHHH-----------HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHH
Confidence 99999998854111000 001256899999999999999999999999999998 9999999988
Q ss_pred hHhHHHHHHhHHHHHhh--------cccccchhhhHHHH
Q 009129 163 SINIGALVASSVLVWIQ--------MNVGWGWGFGIPAV 193 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~--------~~~g~~~~f~i~~~ 193 (543)
..++|..+++.+++.+. +.+|||++|++...
T Consensus 161 ~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 161 SQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88888888887777652 46799999987543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=193.25 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=138.7
Q ss_pred HHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009129 20 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 99 (543)
Q Consensus 20 ~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 99 (543)
.....+.++.+. +++|.|..+.++..+++.++..++.++.|+++||+ |||+.+..+.++..++.+.+..+++
T Consensus 7 ~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~------ 78 (377)
T PRK11102 7 IDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQT------ 78 (377)
T ss_pred HHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHcc------
Confidence 344456666665 57999999999999999999999999999999999 9999999999999999999887754
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 100 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++++.
T Consensus 79 -------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 79 -------------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999888 999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHh
Q 009129 180 MNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 180 ~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
+..+|++.|++.++..++..+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999887766555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=204.86 Aligned_cols=375 Identities=14% Similarity=0.168 Sum_probs=244.2
Q ss_pred hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchH
Q 009129 34 QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQT 113 (543)
Q Consensus 34 ~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (543)
++++|..|.+++.+.+..+..++++++|+++||+ |.|+++..+.++.++++++.+++.. .+.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-----------------~~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-----------------IGF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-----------------hcc
Confidence 5778899999999999999999999999999999 9999999999999999999999975 335
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc-cccchhhhHHH
Q 009129 114 AVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN-VGWGWGFGIPA 192 (543)
Q Consensus 114 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~-~g~~~~f~i~~ 192 (543)
+.+++.|+++|++.|...|+...+.+++.|.+| |++..+..+.+..+|.+++..++|++.+. +||+++|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 578999999999999999999999999999999 99999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhh
Q 009129 193 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKA 272 (543)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (543)
+..++..+++..+....+.++|.-+.. ++...++++.++..+ +
T Consensus 203 ~~g~i~~~~w~~~~~d~P~~h~~is~~---------------------El~~I~~~k~~~~~~--------~-------- 245 (466)
T KOG2532|consen 203 IVGLIWFILWFLFYSDSPSKHPNISEK---------------------ELKYIEKGKSEAHVK--------K-------- 245 (466)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHH---------------------HHHHHHhcccccccC--------C--------
Confidence 887777666655544322222211110 000111111000000 0
Q ss_pred hhhhcccccCCCCCCCcccchhhHHHHHHHHHHH-HHHHHhHHHHhhccCcceEEEEecccccCCCCCCccc-Chhhhhc
Q 009129 273 AVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL-PVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKI-PSASLSL 350 (543)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 350 (543)
+...||+..... ..++..+ ..+.....+.....+.++++ ++.+ ++++ .++.++.
T Consensus 246 ----------~~~vP~~~i~ts-----~~vwai~~~~f~~~~~~~~l~~y~PtY~-------~~VL--~f~v~~~G~~sa 301 (466)
T KOG2532|consen 246 ----------KPPVPYKAILTS-----PPVWAIWISAFGGNWGFYLLLTYLPTYL-------KEVL--GFDVRETGFLSA 301 (466)
T ss_pred ----------CCCCCHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHh--CCChhhhhHHHH
Confidence 014566321111 1111111 11222222223333333322 2212 2222 4566667
Q ss_pred cchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhH
Q 009129 351 FDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRM--GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIF 428 (543)
Q Consensus 351 ~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i--~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (543)
++.+...+...+.+.+.+++.+| ... ....+++ .++....++.++.+++... .+.
T Consensus 302 lP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------------~~~- 358 (466)
T KOG2532|consen 302 LPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------------EHR- 358 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------------Ccc-
Confidence 77777766666666655555554 211 1222222 4566666666666665521 011
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhcc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcch
Q 009129 429 WQVPQYFIVGCAEVFTFIGQLEFFYDQ-APDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGH 507 (543)
Q Consensus 429 ~l~~~~~l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~ 507 (543)
+..+.++..+.+............... +| +.-+..+|+.+....+.++++|.+++.+... + +...
T Consensus 359 ~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~------------~-t~~e 424 (466)
T KOG2532|consen 359 LLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTD------------N-TREE 424 (466)
T ss_pred hHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCC------------C-CHHH
Confidence 222222333333333333333333333 66 4588999999999999999999999988731 0 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 009129 508 LDYFYWLLTILSVLNFLVYLWIA 530 (543)
Q Consensus 508 ~~~~f~~~~~~~~l~~~~~~~~~ 530 (543)
....|.+.+++.+++.+++.++.
T Consensus 425 W~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 425 WRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHhchheeEee
Confidence 46789999999999988887774
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=189.21 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=140.4
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
...+....+.....+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.+..+.++..++.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~ 87 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSL 87 (392)
T ss_pred HHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544 5678999999999999999999999999999999999 9999999999999999988887
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV 170 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l 170 (543)
+++ ...++++|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..+
T Consensus 88 ~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 88 AET-------------------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVL 142 (392)
T ss_pred hCc-------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 643 7778899999999999999999999999999988 999999999999999999
Q ss_pred HhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 171 ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 171 ~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
+|.+++++.+..+|++.|++.++..++..++.
T Consensus 143 ~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 143 APVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999998876655554443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=202.60 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=141.8
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
||....+.+..++..+... ....+..++.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.+..+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 96 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFV-LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 3444445555555555444 444555667789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.+.++.+ .+.++++|++.|++.+...+...+++.|.+|+++ |+++++..+.
T Consensus 97 ~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 151 (496)
T PRK03893 97 VGTLACGFAPG-------------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLIS 151 (496)
T ss_pred HHHHHHHHHhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 99998888754 7889999999999999999999999999999988 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVA 194 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~ 194 (543)
..++|..++|.+.+++.+..+||+.|.+..+.
T Consensus 152 ~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 152 GFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999999999999999875543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=190.50 Aligned_cols=179 Identities=6% Similarity=-0.122 Sum_probs=135.9
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+......++...++..+.++++.|+++++|.|..+.|++.+.+.++..+++++.|+++||+ ||||.++.+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3456677788888889999999999999999999999999999999999999999999999999 999999988776665
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+..........+.. .........+++++.|++.+...|...++..|..+ + ++..++..+..
T Consensus 81 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~ 141 (396)
T TIGR00882 81 LFAPFFIYVFGPLL-----------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMF 141 (396)
T ss_pred HHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhh
Confidence 44332211000000 00113345667888899998888888888766432 2 44567778888
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
.++|..+||.+++.+.+ .+|+.+|++.+...++..+..+
T Consensus 142 ~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 142 GCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred cccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 89999999999998865 6999999988776655544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=187.28 Aligned_cols=343 Identities=10% Similarity=0.045 Sum_probs=210.4
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchh----HHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF----WTIASFSI 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk----~~l~~~~~ 79 (543)
+.........++..+++..+.++++.|++ ++|.|..++|++.+++.+...+++++.|.++||+ ||+ +.+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 81 (382)
T PRK11128 4 QPTRWLALSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTL 81 (382)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHH
Confidence 33444445566666777888889999995 5899999999999999999999999999999999 984 33332222
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.. ....... .+.+.+++.|++.|++.+...|...+++.+. .++ |+++++.
T Consensus 82 ~~~--~~~~~~~-------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~ 132 (382)
T PRK11128 82 LFA--VAFWFGA-------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGK 132 (382)
T ss_pred HHH--HHHHHhc-------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcch
Confidence 211 1112222 2377888899999999999999988888876 334 7888898
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCC
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 239 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (543)
.+...++|..+||.+++++.+++|||..|++.++..++.++... ..++. +|++++.+
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~------------------- 189 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQ------------------- 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCcccccc-------------------
Confidence 99999999999999999999999999999887765444433322 22211 11100000
Q ss_pred cchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHH-HHHHhHHHHhh
Q 009129 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP-VWASGIVFATV 318 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 318 (543)
+ . .+....+ .+..+.|+++.... ...........
T Consensus 190 -----------~--~-------~~~~~~~-------------------------~~i~~~~~~~~~~~~~~l~~~~~~~~ 224 (382)
T PRK11128 190 -----------Q--E-------SAGWPAW-------------------------KALLKEPTVWRFLLCVSLLQGSHAAY 224 (382)
T ss_pred -----------c--c-------ccccchH-------------------------HHHHcChhHHHHHHHHHHHHHHhHhH
Confidence 0 0 0000000 00011112221111 11111111111
Q ss_pred ccCcceEEEEecccccCCCCCCcccChhhhhcc---chhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 009129 319 YSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLF---DTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 395 (543)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 395 (543)
....+.+. .+ .+ .++...+.. +.+..+.... ..+|..+| .+.++.+..+.++.+
T Consensus 225 ~~~~~~~~-------~~-~g----~s~~~~g~~~~~~~~~~~~~~~--------~~g~l~~r---~~~~~~l~~~~~~~~ 281 (382)
T PRK11128 225 YGFSAIYW-------QA-AG----YSASTIGYLWSLGVVAEVLIFA--------FSNRLFRR---WSARDLLLLSAICGV 281 (382)
T ss_pred HHHHHHHH-------HH-CC----CCHhHHHHHHHHHHHHHHHHHH--------HHHHHHHH---CCHHHHHHHHHHHHH
Confidence 11111111 11 11 122222222 2222222222 23333333 566676778888877
Q ss_pred HHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHH-HHHHH
Q 009129 396 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL-TTVAV 474 (543)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~i 474 (543)
++++..... .+.++.++..++.+++++...+....+..+.. ++.+++++++.+ ....+
T Consensus 282 ~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 340 (382)
T PRK11128 282 VRWGLMGST--------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGG 340 (382)
T ss_pred HHHHHHHhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHH
Confidence 777665543 24455666778889999988899999888874 555689999886 56678
Q ss_pred HHHHHHHHHHHhHhh
Q 009129 475 GNYLSTLLVTIVTKV 489 (543)
Q Consensus 475 g~~l~~~i~~~~~~~ 489 (543)
|..+|+.+.|.+.+.
T Consensus 341 g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 341 SIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999999874
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=191.22 Aligned_cols=357 Identities=12% Similarity=0.088 Sum_probs=222.0
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc---cchh-HHHHHHHHHHHHHHHHH
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRF-WTIASFSIIYCLGMTLL 88 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk-~~l~~~~~~~~i~~~~~ 88 (543)
.+..++.+..+.++++.|+++++|+|+.++|++.++..+...+..|+.|+++||. .||| +.++.+.....++.+.+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3455667777788899999999999999999999999999999999999999983 2774 46777878888887777
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCC-CCccccccccceeehhhhhHhHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
...++.+ .......+++.+++.+++.+...+...++.+|..++ ++ |+++.++.+...++|
T Consensus 88 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~~g 148 (437)
T TIGR00792 88 FTTPDFS-------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGATLG 148 (437)
T ss_pred HhCCCCC-------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHHHH
Confidence 6653211 112356667778888999998888888999998854 44 889999888888888
Q ss_pred HHHHhHHHHHhh-------cccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCc
Q 009129 168 ALVASSVLVWIQ-------MNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPAD 240 (543)
Q Consensus 168 ~~l~~~i~~~~~-------~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (543)
..+++.+.+.+. +..+|++.+.+.+++.++..+......++.+.+.++++
T Consensus 149 ~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~----------------------- 205 (437)
T TIGR00792 149 GLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI----------------------- 205 (437)
T ss_pred HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-----------------------
Confidence 887766655543 24579998888777655555443333332110000000
Q ss_pred chhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhcc
Q 009129 241 KSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYS 320 (543)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (543)
.++....+.. +...+.|.+..................
T Consensus 206 ----------------------~~~~~~~~~~---------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (437)
T TIGR00792 206 ----------------------EKKLSLKQIF---------------------KALFKNDQLLILCLAYLFYNLAFNIKN 242 (437)
T ss_pred ----------------------ccCCCHHHHH---------------------HHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 0000000000 000111222211111111111111222
Q ss_pred CcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHH
Q 009129 321 QMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVA 400 (543)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~ 400 (543)
....++..+... +. ...+.+.....+..++..++..+ +.+| +++++.+..+.++.+++.+.
T Consensus 243 ~~~~~~~~~~~~-~~-------~~~~~~~~~~~i~~ii~~~~~~~----l~~r-------~g~~~~~~~~~~~~~~~~~~ 303 (437)
T TIGR00792 243 GVQVYYFTYVLG-DP-------ELFSYMGSIAIVAGLIGVLLFPR----LVKK-------FGRKILFAGGILLMVLGYLI 303 (437)
T ss_pred chhheeEeeecC-Ch-------HHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHHHHHHH
Confidence 222333322211 00 01112222223333333333332 4444 45556677788777777665
Q ss_pred HHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccC-------cchHHHHHHHHHHHHH
Q 009129 401 AGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLCSALSLTTVA 473 (543)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~ 473 (543)
..+.. .+.+..++..++.+++.+...+..++...|..| ++.+|++.|+.++...
T Consensus 304 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 364 (437)
T TIGR00792 304 FFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK 364 (437)
T ss_pred HHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH
Confidence 54431 133444556677888888888889999888865 5678999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcc
Q 009129 474 VGNYLSTLLVTIVTKVTTK 492 (543)
Q Consensus 474 ig~~l~~~i~~~~~~~~~~ 492 (543)
+|..+++.+.+.+.+..+.
T Consensus 365 ~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 365 LGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999886653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=190.88 Aligned_cols=360 Identities=13% Similarity=0.148 Sum_probs=238.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..-.+...++..+++......-++-++. ++.-|+..++++..+..+-..+..+++|.++||+ .|||+++.+.++.++.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 3444667777877777766666665554 5677889999999999999999999999999999 9999999999998877
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+++..... ..+.+.+++.-++.|++.+...|+.++++.++.|+++ ..++.++.....
T Consensus 89 ~~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~ 148 (524)
T PF05977_consen 89 ALLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISF 148 (524)
T ss_pred HHHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHH
Confidence 66665443211 1347888888899999999999999999999999998 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhh
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL 244 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (543)
|+...+||.++|.+...+|-.++|.+.++..++.+..+...+++.+.+ +.+.+...+-+...++.
T Consensus 149 niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~ry------------ 213 (524)
T PF05977_consen 149 NIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLRY------------ 213 (524)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHHH------------
Confidence 999999999999999888999999999987776665554443322111 11111111000000000
Q ss_pred hhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHH-HHHHHHHHHhHHHHhhccCcc
Q 009129 245 YETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAI-IRLLPVWASGIVFATVYSQMS 323 (543)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (543)
. ..+ +..+.+ .....+ .......... .
T Consensus 214 ------------------------v----------------------~~~--~~l~~~l~~~~~~---~l~~~a~~aL-l 241 (524)
T PF05977_consen 214 ------------------------V----------------------RSS--PPLRSVLLRSFLF---NLFASAVWAL-L 241 (524)
T ss_pred ------------------------H----------------------hcc--hHHHHHHHHHHHH---HHhhhHHHHh-h
Confidence 0 000 011111 111111 1111111111 1
Q ss_pred eEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009129 324 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 403 (543)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 403 (543)
+.+ ..+.++ ..+..++.+. +..-.+.+.+.+..+..++ + .+..+.+..+.++.+++.+.+++
T Consensus 242 Pl~------a~~~l~----~~a~~yGll~--a~~gvGai~Gal~~~~l~~---~---~~~~~lv~~~~~~~a~~~~~lal 303 (524)
T PF05977_consen 242 PLF------ARDVLG----GGASGYGLLL--AAFGVGAILGALLLPRLRR---R---LSSRRLVLLASLLFALALLLLAL 303 (524)
T ss_pred hHH------HHHHhC----CcHHHHHHHH--HHHHHHHHHHHHHHHHhhc---c---cCcchhhHHHHHHHHHHHHHHhc
Confidence 111 111111 1222222221 1222222222332222222 2 44445566777777777766665
Q ss_pred HHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 009129 404 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLV 483 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~ 483 (543)
. .+.+..++.+++.|++.....+...+..++..|+++||++++++++....+..+|..+.
T Consensus 304 ~--------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 304 S--------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred c--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 35566677788899999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhc
Q 009129 484 TIVTKVTT 491 (543)
Q Consensus 484 ~~~~~~~~ 491 (543)
|.+.+..+
T Consensus 364 G~la~~~g 371 (524)
T PF05977_consen 364 GFLADHFG 371 (524)
T ss_pred HHHHHHhC
Confidence 99987543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=196.08 Aligned_cols=179 Identities=19% Similarity=0.224 Sum_probs=159.4
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
++.+.++++++.+++.-=|.+-. ...-.++.+|++++..|++.+.+.+...+.+|+.|+++||| .||+++.+|..++.
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence 34566677777777776666655 34557889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+.++++.. ++++.+.|.+.|+|.+...|+++++++|.||+++ |++.++++|+
T Consensus 110 ~Av~~~~fs~~-------------------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~ 164 (493)
T KOG1330|consen 110 LAVFASGFSNH-------------------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYF 164 (493)
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhh
Confidence 99999999853 9999999999999999999999999999999999 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
+++.|..+|.+.++++.+..+ |||+|+..+++.++..++..++.++
T Consensus 165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 999999999999999887766 9999999999888777766665554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=195.03 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=130.4
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
....++++ .|.|..+.++..+++.++..++.++.|+++||+ |||+.+..+.++..++.+.+...++
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~------------ 113 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW------------ 113 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc------------
Confidence 34456765 599999999999999999999999999999999 9999999999999988887765532
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh-ccccc
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ-MNVGW 184 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~-~~~g~ 184 (543)
...+...+++.|++.|++.|...+.....+.|.+|+++ |++++++++...++|..++|.+.+... ...+|
T Consensus 114 ---~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 114 ---ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred ---ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 01236677888999999999999999999999999998 999999999999999999988776543 45689
Q ss_pred chhhhHHHHHHHHHHHHHHhcCc
Q 009129 185 GWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 185 ~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
|..|++.++..++..+......+
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988776655444333333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=212.98 Aligned_cols=157 Identities=10% Similarity=0.064 Sum_probs=131.2
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCc--hhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGN--VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~ 79 (543)
+.+....++...++.++...+....+..++.+.++.+. ...+++.+++.++..++++++|+++||+ |||++++++.+
T Consensus 7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~ 85 (1146)
T PRK08633 7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKL 85 (1146)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHH
Confidence 34566667778888888777777777777777676654 3468889999999999999999999999 99999999988
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.++..++..++... .+.+.++++|+++|++.+...|+..++++|++|+++ |++++++
T Consensus 86 ~~~~~~~~~~~~~~~----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 143 (1146)
T PRK08633 86 FEVGLTLLIVLAYYL----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGL 143 (1146)
T ss_pred HHHHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhH
Confidence 776665555443210 237889999999999999999999999999999998 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcc
Q 009129 160 FYLSINIGALVASSVLVWIQMN 181 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~ 181 (543)
...+.++|.++||.+++++.+.
T Consensus 144 ~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 144 LEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=212.69 Aligned_cols=170 Identities=11% Similarity=0.007 Sum_probs=123.1
Q ss_pred cchHHHHHHHHHhHhHHHhHHH---H-HHHHhhhcCCCc-hhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTN---L-VNYLQKQLNQGN-VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---l-~~~l~~~l~~s~-~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~ 79 (543)
....++...++..++.+..... + ...+.++.+.+. ...+++.+++.+...++++++|+++||+ |||+++.....
T Consensus 12 ~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~ 90 (1140)
T PRK06814 12 RFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKF 90 (1140)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHH
Confidence 3344555666665554333222 2 222333333322 4568888889999999999999999999 99998643222
Q ss_pred ---HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccce
Q 009129 80 ---IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF 156 (543)
Q Consensus 80 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 156 (543)
+..+..+...... +.+.++++|+++|++.+...|+..+++.|++|+++ |+++
T Consensus 91 ~~~~~~~~~~~~~~~~-------------------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a 145 (1140)
T PRK06814 91 AEIGIAALAIYGFHLN-------------------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGA 145 (1140)
T ss_pred HHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchh
Confidence 2222222222222 38899999999999999999999999999999998 9999
Q ss_pred eehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 157 FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 157 ~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
+++.+.+.++|.++||.++|++....+|++.|...++..+++++
T Consensus 146 ~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 146 NALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988544444443333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=189.44 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=137.7
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+..+...+......+...+.++.++++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.++.+.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4556677777777778888888888789999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhh-cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 84 GMTLLTLTA-SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+.+++++++ + .+.++++|+++|++.+. .+...++++|.+|+++ |+++.++...
T Consensus 80 ~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~ 133 (366)
T TIGR00886 80 PCLWAGLAVQS-------------------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAG 133 (366)
T ss_pred HHHHHHHHhhh-------------------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHH
Confidence 999988875 4 78888999999999665 4667889999999988 9999999988
Q ss_pred hHhHHHHHHhHHHHHhhc----------ccccchhhhH
Q 009129 163 SINIGALVASSVLVWIQM----------NVGWGWGFGI 190 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~----------~~g~~~~f~i 190 (543)
..++|..+++.+++.+.. ..+||+.|++
T Consensus 134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 888888888777766554 3489999943
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=187.45 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=117.8
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
++-+...+........ ...+++++|.|..+.++..+.+.++..+++++.|+++||+ ||||++..+.++++++.+++..
T Consensus 33 ~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~ 110 (438)
T PRK10133 33 SLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWP 110 (438)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444 4456899999999999999999999999999999999999 9999999999999999987632
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV 170 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l 170 (543)
... ..+...++++|+++|+|.|...+..++++.|..|+++ |...++..+....+|..+
T Consensus 111 ~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~ 168 (438)
T PRK10133 111 AAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAII 168 (438)
T ss_pred HHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHH
Confidence 110 0238889999999999999999999999999866665 666688888888999999
Q ss_pred HhHHHHHhh
Q 009129 171 ASSVLVWIQ 179 (543)
Q Consensus 171 ~~~i~~~~~ 179 (543)
||.+++.+.
T Consensus 169 g~~~g~~l~ 177 (438)
T PRK10133 169 AVVFGQSLI 177 (438)
T ss_pred HHHHHHHHH
Confidence 998887654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=183.78 Aligned_cols=177 Identities=13% Similarity=0.154 Sum_probs=141.6
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc----cchhHH-HHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFWT-IAS 76 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~~-l~~ 76 (543)
.+|+.+.++...+......+...+.++.+++ +.|.|..+.+... ..... .++.++.|.++||+ +||||. +..
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence 4677788888888888888888888888876 4588888888863 33222 36889999999995 288875 667
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccce
Q 009129 77 FSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF 156 (543)
Q Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 156 (543)
+.++..++...+++... ..+.+.+.+.+++.+++.+...+...++..|++|+++ |+++
T Consensus 87 ~~i~~~~~~~~~a~~~~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~ 144 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEP----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAG 144 (491)
T ss_pred HHHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHH
Confidence 77777777777766531 1347788888999999999999999999999999888 9999
Q ss_pred eehhhhhHhHHHHHHhHHHHHhhc-ccccchhhhHHHHHHHHHHHHHH
Q 009129 157 FNWFYLSINIGALVASSVLVWIQM-NVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 157 ~~~~~~~~~lg~~l~~~i~~~~~~-~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 145 ~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 145 AAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 57999999998876665544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=183.35 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=117.8
Q ss_pred HHHHHHhhhcC--CCchhhhhhHHH--H---HHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009129 26 NLVNYLQKQLN--QGNVTASNNVTN--W---SGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK 98 (543)
Q Consensus 26 ~l~~~l~~~l~--~s~~~~~~~~~~--~---~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~ 98 (543)
....++.++.. .++++.+...+. + .++..+++++.|+++||+ ||||+++.+.++..++.++++++++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 34455555543 445555554443 2 233346889999999999 999999999999999999998875421100
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHh
Q 009129 99 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~ 178 (543)
......++++|+++|++.+...+...++++|.+|+++ |++..++.+....+|..+++.++..+
T Consensus 93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012368889999999999999999999999999988 99999999999999999998877665
Q ss_pred h--------cccccchhhhHHHHHHHHHHH
Q 009129 179 Q--------MNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 179 ~--------~~~g~~~~f~i~~~~~~i~~~ 200 (543)
. +.++||+.|.+.++..++..+
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 3 356899999887765554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-19 Score=183.42 Aligned_cols=145 Identities=12% Similarity=-0.032 Sum_probs=116.7
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhh-hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~-~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
....+...+....+.+.+...+.+ ++|+|.+|.++..++..++..++.++.|++.||+ |.|+++.++.++..+.++..
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~ 117 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWL 117 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 333344555555555566666654 8999999999999999999999999999999999 99999999999999999988
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
+++... ...+...+++.|++.|++ |...+.....+++++|+++ ||+++++.....|+|.
T Consensus 118 ~~a~~~--------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~ 176 (462)
T PRK15034 118 GIAVQN--------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGV 176 (462)
T ss_pred HHHHcc--------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHH
Confidence 875210 012388999999999998 7788999999999999998 9999999976677777
Q ss_pred HHHhHHHH
Q 009129 169 LVASSVLV 176 (543)
Q Consensus 169 ~l~~~i~~ 176 (543)
.+++.+..
T Consensus 177 ~l~~~l~p 184 (462)
T PRK15034 177 SVMQLVAP 184 (462)
T ss_pred HHHHHHHH
Confidence 66555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=181.84 Aligned_cols=171 Identities=14% Similarity=0.130 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
..++..-+...+.+ ++...+...+++++|.|..+.|++.+.+.++..+++++.|++.||+ |||+++..+.++++++.+
T Consensus 6 ~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 34444444454444 5555555677899999999999999999999999999999999999 999999999999999988
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
+...+.. ..+.+.++++|++.|+|.|...+...+++.+..|+++ |++..+..+...++
T Consensus 84 l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 141 (410)
T TIGR00885 84 LFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPF 141 (410)
T ss_pred HHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHH
Confidence 7654421 1237889999999999999999999999999998888 88889999999999
Q ss_pred HHHHHhHHHHHhhcc--------------------------cccchhhhHHHHHHHHHHHH
Q 009129 167 GALVASSVLVWIQMN--------------------------VGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 167 g~~l~~~i~~~~~~~--------------------------~g~~~~f~i~~~~~~i~~~~ 201 (543)
|..+||.+++.+... .+||++|++.++..++..++
T Consensus 142 G~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 142 GSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877422 36999998877655544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-24 Score=228.43 Aligned_cols=394 Identities=16% Similarity=0.140 Sum_probs=237.4
Q ss_pred hhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHH
Q 009129 41 TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (543)
+.++..+...++..++++++|+++||+ |||++++.+.++..++.++..++++. .+...+.++|
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~R 109 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY----------------NNFWMLLIGR 109 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc----------------cccccccccc
Confidence 467889999999999999999999999 99999999999999999999998621 1378899999
Q ss_pred HHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc---ccccchhhhHHHHHHHH
Q 009129 121 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM---NVGWGWGFGIPAVAMAI 197 (543)
Q Consensus 121 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~---~~g~~~~f~i~~~~~~i 197 (543)
++.|++.|+..+..+.++.|..|++. |+...++.+....+|..++..++-...+ ..+||..+.++.+..++
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~ 183 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL 183 (451)
T ss_pred cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999 9999999999999999988766654433 23599998888765443
Q ss_pred HHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccc--hhhhhhhh
Q 009129 198 AVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFK--FFDKAAVE 275 (543)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 275 (543)
.++... ..||||+|+..+++.|++++..++....+... ..+.....
T Consensus 184 ~~~~~~--------------------------------~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 231 (451)
T PF00083_consen 184 VLLLRF--------------------------------FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEK 231 (451)
T ss_pred cccccc--------------------------------ccccccceeccccccccccccccccccccccccccccccccc
Confidence 332211 25788888888887777777666543221110 10000000
Q ss_pred hcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHH-HHhhccCcceEEEEecccccCCCCCCcccChhh-hhccch
Q 009129 276 TQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIV-FATVYSQMSTMFVLQGNTMDQHMGPNFKIPSAS-LSLFDT 353 (543)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 353 (543)
.... +.+..|+...+++ +.+++++..+.+...+.. .......+.+. .....+ .++.. ......
T Consensus 232 ~~~~---~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-------i~~~~~----~~~~~~~~~~~~ 296 (451)
T PF00083_consen 232 KESQ---ESKASWRDLFRNK-KYRKRLLIALLLQFFQQFSGINFIFYYSPS-------IFENAG----ISNSFLATLILG 296 (451)
T ss_pred cccc---ccceeeeeccccc-cccccccccccccccccccccccccccccc-------cccccc----cccccccccccc
Confidence 0000 0011222222111 012222211111111100 00000111111 111111 11111 111111
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHH-HHHHHhHhhhhccCccCCCCccchhHHHHH
Q 009129 354 LSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAG-ILEVVRLNIVKRNNYYDIETIPMTIFWQVP 432 (543)
Q Consensus 354 l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (543)
+...+...+. ..+.+|. ++++.+..+..+++++.+..+ ..... .+.+.......+..
T Consensus 297 ~~~~~~~~~~----~~~~~~~-------GRr~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 297 LVNFLGTLLA----IFLIDRF-------GRRKLLIIGLLLMAICSLILGIIFFLG-----------VSSSSWWSILSIVF 354 (451)
T ss_pred cccccccccc----ccccccc-------ccccccccccccccccccccccccccc-----------ccccccccccccee
Confidence 1111111111 1244443 333455667777666665554 11000 00000012222222
Q ss_pred HHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHH
Q 009129 433 QYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFY 512 (543)
Q Consensus 433 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f 512 (543)
..+..........+..+.+..|.+|.+.|+++.++.....++++++++.+.+.+.+..+ ....+
T Consensus 355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~~~~~ 418 (451)
T PF00083_consen 355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------GWGVF 418 (451)
T ss_pred eeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------ccccc
Confidence 22222233334457788899999999999999999999999999999888887764321 11346
Q ss_pred HHHHHHHHHHHHHHHHHHhhceeecccCCC
Q 009129 513 WLLTILSVLNFLVYLWIAKWFTYKKATGRA 542 (543)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 542 (543)
.+.++++++..++.+++.+|+|+++.||.+
T Consensus 419 ~i~~~~~~i~~i~~~~~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 419 LIFAGVCLIAIIFVYFFLPETKGKTLEEIQ 448 (451)
T ss_pred hhhHHHHHHHHhheeEEEeeCCCCCHHHHH
Confidence 777888888888888999999999988754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=175.98 Aligned_cols=382 Identities=13% Similarity=0.056 Sum_probs=253.4
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
...+...+.-..+.+.+..++.+++|+|+.|.+++..+..+...+..++.|.+.||+ |.|+...+++++..+-.+..++
T Consensus 20 ~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~ 98 (417)
T COG2223 20 TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAF 98 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677788889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV 170 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l 170 (543)
+.+.+ +.+.+++.+++.|++ |...+...++++..+|+|+ +|.+++++. ..|+|..+
T Consensus 99 a~~~~----------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av 154 (417)
T COG2223 99 AVTYP----------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAV 154 (417)
T ss_pred HccCC----------------chHHHHHHHHHHhcc-cceehcccccccccCChhh------hhHHHHHhc-cccccHHH
Confidence 87532 247899999999999 5667888899999999999 999999999 88999999
Q ss_pred HhHHHHHhhcccc---cchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhh
Q 009129 171 ASSVLVWIQMNVG---WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYET 247 (543)
Q Consensus 171 ~~~i~~~~~~~~g---~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (543)
...++..+....+ |+..-.+..+.+++..+.+++..+..++.+++.++..+
T Consensus 155 ~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-------------------------- 208 (417)
T COG2223 155 AQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-------------------------- 208 (417)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--------------------------
Confidence 9999999888888 99888888887777766666655433322221111100
Q ss_pred hhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhHHHHhhccCcceEE
Q 009129 248 ADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR-LLPVWASGIVFATVYSQMSTMF 326 (543)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 326 (543)
. +.+.+..+++... .+....+...+.....+.+.++
T Consensus 209 ----------------------~---------------------~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~ 245 (417)
T COG2223 209 ----------------------A---------------------QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYL 245 (417)
T ss_pred ----------------------h---------------------HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000111111221 1122221111111112222222
Q ss_pred EEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009129 327 VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEV 406 (543)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 406 (543)
.. +.+ --....+. .....++.+.+.-|+..++.+| ++..+.....+..++++....++...
T Consensus 246 ~~-------~fg-~~~~~Ag~--------~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 246 VT-------QFG-LSPVTAGL--------IAFLFPLIGALARPLGGWLSDR---IGGRRVTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HH-------hcC-CChhhHHH--------HHHHHHHHHHHHHhccchhhhh---ccchhHHHHHHHHHHHHHHHHHcccc
Confidence 11 111 00111122 2333444445555666666666 77777778888888888777765421
Q ss_pred HhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 407 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
. .....+.......++...+..++.+-..+-.+..+.|+ +-|.+.|+.....++|++.-|...+..
T Consensus 307 ~-------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 307 G-------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred c-------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHH
Confidence 1 01112233333334444444445555555566566665 578889999999999999999999988
Q ss_pred HhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhce
Q 009129 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534 (543)
Q Consensus 487 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~ 534 (543)
.+.++ .+...|+++..+.+++.+..+...+|.+
T Consensus 373 ~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 373 LDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred HHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87654 3446688888888888877776665543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=182.30 Aligned_cols=154 Identities=15% Similarity=0.129 Sum_probs=127.2
Q ss_pred HHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 009129 15 CERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASV 94 (543)
Q Consensus 15 ~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~ 94 (543)
++.-.++.....+...+++++|.|..+.++..+.+.++..++.++.|+++||+ ||||++..+.++..++.+.+ ..++
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~~- 86 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAPG- 86 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhcc-
Confidence 33333444444455567789999999999999999999999999999999999 99999999998888877766 4432
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHH
Q 009129 95 SGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSV 174 (543)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i 174 (543)
...+++.|++.|+|.+...+..+..+.|.+| ++ |++++++.+...++|..+++.+
T Consensus 87 ------------------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~ 141 (355)
T TIGR00896 87 ------------------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAA 141 (355)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999988888889998886 45 8999999999999999999999
Q ss_pred HHHhhccc--ccchhhhHHHHHHH
Q 009129 175 LVWIQMNV--GWGWGFGIPAVAMA 196 (543)
Q Consensus 175 ~~~~~~~~--g~~~~f~i~~~~~~ 196 (543)
++.+.+.. +||+.|.+.++..+
T Consensus 142 ~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 142 TVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 98887665 38988877665433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-18 Score=177.20 Aligned_cols=447 Identities=13% Similarity=0.071 Sum_probs=256.1
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhh----ccchhHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGRFWTIASF 77 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grk~~l~~~ 77 (543)
+.++...++.+.+...+++-...++++.|+ +++|.+..+++++..+..+...+.+|+.|+++|| + ||||.++.+
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~ 79 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAA 79 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHH
Confidence 456677788888888899888888888887 5799999999999999999999999999999995 7 999998875
Q ss_pred -HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccce
Q 009129 78 -SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSF 156 (543)
Q Consensus 78 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 156 (543)
.....++..+++.+.+...... |+............+.++..+..++....++...++++|.+|+++++ ++.+
T Consensus 80 g~~~~~~~l~ll~~~~~~~~~~~--~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a 153 (477)
T TIGR01301 80 GAALVAFAVILIGFAADIGHLFG--DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIA 153 (477)
T ss_pred HHHHHHHHHHHHHhCchhhhhcc--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHH
Confidence 5556666677766543211100 00000000011234455555566788888889999999999988621 3678
Q ss_pred eehhhhhHhHHHHHHhHHHHHh--hccc-------------ccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHH
Q 009129 157 FNWFYLSINIGALVASSVLVWI--QMNV-------------GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTR 221 (543)
Q Consensus 157 ~~~~~~~~~lg~~l~~~i~~~~--~~~~-------------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 221 (543)
+++.+...++|..+|+.++++. .+.+ +.+..|.+.++..++..++.....||.+..++++...+
T Consensus 154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~- 232 (477)
T TIGR01301 154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh-
Confidence 9999999999999999999875 2211 56788999888777776666555554321111100000
Q ss_pred HHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHH
Q 009129 222 IMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKA 301 (543)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (543)
+.++.+ +.+....+.. . | +.-.+..|.
T Consensus 233 ------------------------~~~~~~----------~~~~~~~~~~--i-------------~----~~~~~mP~~ 259 (477)
T TIGR01301 233 ------------------------EAAPPS----------KHGEEAFFGE--L-------------F----GAFKYLPRP 259 (477)
T ss_pred ------------------------hccccc----------ccchhhhHHH--H-------------H----HHHHHCCHH
Confidence 000000 0000000000 0 0 000000111
Q ss_pred HHHHHHHHHHhHHHHhhccCcceEEEEec-ccccCCCCCCcccChh-hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCC
Q 009129 302 IIRLLPVWASGIVFATVYSQMSTMFVLQG-NTMDQHMGPNFKIPSA-SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHER 379 (543)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~ 379 (543)
+.+...+.++.-..+..+..+.+.+.-+. .+.+......++ .+ -.+....+...+...+.+.++.++.||.++
T Consensus 260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~--~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~--- 334 (477)
T TIGR01301 260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYD--DGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA--- 334 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 11111121111111222112122111100 000110000010 01 011111112222222444455556666432
Q ss_pred CCCchHHH-HHHHHHHHHHHHHHHHHHHHhHhhhhccCccCC--CCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhccc
Q 009129 380 GFTQLQRM-GIGLLISIFSMVAAGILEVVRLNIVKRNNYYDI--ETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQA 456 (543)
Q Consensus 380 ~~~~~~~i-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~ 456 (543)
+++. .++.++.++++....+...-.-|. .+.+-.++ .+.....+.....+.+.|+..+..+..-++++.+..
T Consensus 335 ----~k~~~~~s~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~ 409 (477)
T TIGR01301 335 ----GKRLWGIVNIILAICLAATVLVTYVAKNS-RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS 409 (477)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence 2333 677778888877776553210000 00000000 011111366677788899999999999999999999
Q ss_pred Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhce
Q 009129 457 PD--AMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 534 (543)
Q Consensus 457 P~--~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~ 534 (543)
|+ +..|..+|+.|++..+...+.....+.+.+..+.+ ....+.+-++.++++.+..+++.++.+
T Consensus 410 ~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 410 SNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 95 45599999999999999999998888866554421 124567777778888888888777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-17 Score=168.12 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=133.5
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc----cchhH-HHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFW-TIASFSIIYCLG 84 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~-~l~~~~~~~~i~ 84 (543)
+...+...+.+.-...-+|.|+++ .|.|.++.|+....... .+..++.|+++||+ +|||| .+..+.++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 344455556666677788899975 59999999999777665 68899999999997 26655 788888888888
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
...+.+... ..+.+.+++..++.++..+...|...+++.|++|+++ |+++.++...+.
T Consensus 82 ~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~ 139 (402)
T PRK11902 82 IAAMAFCPP----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGY 139 (402)
T ss_pred HHHHHhcCc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHH
Confidence 887776632 1236667777777888889999999999999999998 999999999999
Q ss_pred hHHHHHHhHHHHHhhcc-cccchhhhHHHHHHHHHHHH
Q 009129 165 NIGALVASSVLVWIQMN-VGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~-~g~~~~f~i~~~~~~i~~~~ 201 (543)
++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 140 ~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 140 RLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 49999999988766554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=174.60 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=122.6
Q ss_pred HhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHhhcccC
Q 009129 22 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFWTI-ASFSIIYCLGMTLLTLTASVSG 96 (543)
Q Consensus 22 ~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~~l-~~~~~~~~i~~~~~~~~~~~~~ 96 (543)
++.......+.+++|+|.++.|+..+. .+...+ .++.|.++||+ .||||.+ +.+.++.+++...+.+...
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 344444444556889999999999755 333344 88999999997 3899974 5667777777666665532
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH
Q 009129 97 LKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 176 (543)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~ 176 (543)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|..+++.+++
T Consensus 80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566666777888888889999999999999888 999999999999999999999999
Q ss_pred Hhhcccc--------cchhhhHHHHHHHHHHHHHH
Q 009129 177 WIQMNVG--------WGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 177 ~~~~~~g--------~~~~f~i~~~~~~i~~~~~~ 203 (543)
++....+ ||..|++.++..++..+...
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9988888 99999998876666554433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=179.94 Aligned_cols=383 Identities=11% Similarity=0.072 Sum_probs=229.8
Q ss_pred hhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCch
Q 009129 33 KQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQ 112 (543)
Q Consensus 33 ~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (543)
+..+.+.....+..+++.++..+++++.|.++||+ |||++++++.++.+++.+..+++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~------------------- 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN------------------- 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 55667788889999999999999999999999997 9999999999999999999999976
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHH
Q 009129 113 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPA 192 (543)
Q Consensus 113 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~ 192 (543)
...+++.|++.|++.++...+...+++|.+++++ |+.+..+ ......++.++|.+++++.. +||+.+++..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999 77777888888999999887 7999999987
Q ss_pred HHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCc----cc-c
Q 009129 193 VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTS----KF-K 267 (543)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 267 (543)
+..++.++..+. .||+|+|+..+++.+++.+..++..+.+ .. .
T Consensus 242 ~~~~~~~~~~~l--------------------------------~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~ 289 (521)
T KOG0255|consen 242 IPSGLFLLLWFL--------------------------------PPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKE 289 (521)
T ss_pred HHHHHHHHHHHc--------------------------------cCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHH
Confidence 765555444221 2244444444444433333322221110 00 0
Q ss_pred hhhhhhhhhcccc-cCCCCCCCcccchhhHHHHHHHHHHHHHH-HHhHHHHhhccCcceEEEEecccccCCCCCCcccCh
Q 009129 268 FFDKAAVETQTDR-VKGSADPWRLCTVTQVEELKAIIRLLPVW-ASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPS 345 (543)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (543)
..+......+... +.+....+.+....+ +.+++++.....+ .....++.. ..+.. +++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~~~~~~~~y~gl---------------~~~~~-~lg~~~ 352 (521)
T KOG0255|consen 290 LLRLELLLRPLKLLFTEPKISFLDLFRTP-RLRYRTLYLLFIWFVFSLVYYGL---------------SLNVS-GLGGNI 352 (521)
T ss_pred HHHHHHHhhHhhhhccCCCCchhhhhcCH-HHHHHHHHHHHHHHHHhHHHHhh---------------hhhhh-hcCchH
Confidence 0000000000000 000000111111111 1222222221111 111111110 00000 111112
Q ss_pred hhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccc
Q 009129 346 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425 (543)
Q Consensus 346 ~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
.....+....-........ ...++ .+++.....+..+..++.++.++.... .
T Consensus 353 ~~~~~~~~~~~~p~~~~~~----~~~~~-------~gR~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 404 (521)
T KOG0255|consen 353 YLNFTLSGLVELPAYFRNG----LLLPE-------FGRRPPLFLSLFLAGIGLLLFGWLPDD-----------------L 404 (521)
T ss_pred HHHHHHHHHHHhhHHHHHH----HHHHH-------hCcHHHHHHHHHHHHHHHHHHHHhhcc-----------------c
Confidence 2212211111111111111 12222 344566777888888888888776321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCc
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNR 505 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~ 505 (543)
..+...+...+..++........+.+..|+.|+..|+.+.+..+....+|+++++.+.........
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~-------------- 470 (521)
T KOG0255|consen 405 GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP-------------- 470 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------------
Confidence 111222333344444445555569999999999999999999999999999999988765543110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhceeecc
Q 009129 506 GHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 538 (543)
Q Consensus 506 ~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~ 538 (543)
. ..+..++.+..+..++...+.++++.+.+
T Consensus 471 -~--~~~~~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 471 -L--LGLILFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred -c--chHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 0 11222566666666666677777766543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=166.14 Aligned_cols=388 Identities=14% Similarity=0.155 Sum_probs=227.7
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
.+....|+..+.+-...++++.|++ +.|+|..|+|.+.+...+...+.+++.|+++||...+||.+.+..++.++....
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 3555666666777778899999996 477999999999999999999999999999999845788888777777766655
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHH
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
....++ .+.+++..++..+......|...++..+...+ ++.-++-.....++|
T Consensus 85 ~~~~~~-------------------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiG 137 (400)
T PF03825_consen 85 LAFSSS-------------------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIG 137 (400)
T ss_pred HHHhcc-------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHH
Confidence 555433 56666667778888888889999988888763 233345555566666
Q ss_pred HHHHhHH-HHHhhcccc---cchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchh
Q 009129 168 ALVASSV-LVWIQMNVG---WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243 (543)
Q Consensus 168 ~~l~~~i-~~~~~~~~g---~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (543)
..++... ++++....+ ....+++.++..++.... .+..|+.+.++..+++.++
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~---------------------- 194 (400)
T PF03825_consen 138 FIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKK---------------------- 194 (400)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCccc----------------------
Confidence 6666433 233332222 223455554433222221 1222221100000000000
Q ss_pred hhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcc
Q 009129 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS 323 (543)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (543)
....+. + +-.++++.+..++..+..+..... +..+.
T Consensus 195 ----------------------~~~~~~----------------~-----~llk~~~~~~Fll~~~l~~~~~~~-~~~f~ 230 (400)
T PF03825_consen 195 ----------------------LLGLDA----------------L-----KLLKNPRFLVFLLAAFLIGISHAA-YYTFF 230 (400)
T ss_pred ----------------------ccchHH----------------H-----HHhcCccHHHHHHHHHHHHHHHHH-HHHHH
Confidence 000000 0 000111111111111122222211 11111
Q ss_pred eEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009129 324 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 403 (543)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 403 (543)
+.+.. ..+ ++. ....+. .+..+.+.+....-..+|..+| ++.++.+.++.+..++-..+++.
T Consensus 231 ~~yl~-------~~g-g~~--~~~~g~-----~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 231 SIYLQ-------ELG-GYS--GSTIGI-----LWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHH-------Hcc-cch--hhHHHH-----HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111 111 111111 1222233333333345555555 78888899999999998888876
Q ss_pred HHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHH-HHHHHHHHHHHH
Q 009129 404 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT-TVAVGNYLSTLL 482 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~~l~~~i 482 (543)
..+ |.+.....+.....+.|+..+........++.+.+|++.|++++++++. ..++|+.+|+.+
T Consensus 293 ~~~---------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 293 FSD---------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred hcC---------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 521 0011112223334579999999999999999999999999999999875 678999999999
Q ss_pred HHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009129 483 VTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWF 533 (543)
Q Consensus 483 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~ 533 (543)
.|.+.+..+.++. ..+..++.+.+++.++..++++++.|+.
T Consensus 358 gG~l~~~~g~~~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 358 GGWLYDAFGARGM----------FDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHhcchhh----------hhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999987654322 1223456677777777777777766653
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=168.51 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=125.9
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhh----ccchh-HHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGRF-WTIASF 77 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grk-~~l~~~ 77 (543)
+|+.+.-.+..+..++.+..+..+++.|+++.+|+|..++|.+.++..+..++..|+.|+++|| + ||| +-++.+
T Consensus 8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~ 86 (444)
T PRK09669 8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWF 86 (444)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHH
Confidence 3344444455566677777888899999999999999999999999999999999999999999 6 774 555567
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccccee
Q 009129 78 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 157 (543)
Q Consensus 78 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 157 (543)
.+...++.+++...++.+ .......+++..++.+.+.........++.+|+.+++++ |++..
T Consensus 87 ~~~~~i~~~l~f~~p~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~ 148 (444)
T PRK09669 87 AIPFGVVCLLTFYTPDFG-------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQ 148 (444)
T ss_pred HHHHHHHHHHHHhCCCCC-------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHH
Confidence 677777766554442210 112355666666677777777777888999999865432 88888
Q ss_pred ehhhhhHhHHHHHHhHHHHHhhc-------ccccchhhhHHHHHHHHH
Q 009129 158 NWFYLSINIGALVASSVLVWIQM-------NVGWGWGFGIPAVAMAIA 198 (543)
Q Consensus 158 ~~~~~~~~lg~~l~~~i~~~~~~-------~~g~~~~f~i~~~~~~i~ 198 (543)
++.....++|..+++.+...+.. ..+|+..+.+.+++.++.
T Consensus 149 ~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 149 SWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 88888888888887765544332 235776666665544443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=160.37 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=104.3
Q ss_pred CchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHH
Q 009129 38 GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTF 117 (543)
Q Consensus 38 s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (543)
+..-.|.+-+.|++.+.+.++..|.++||+ |||++++.|.+..++...+-+.+.+ +..+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~-------------------F~afv 125 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN-------------------FAAFV 125 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHH
Confidence 445678888999999999999999999999 9999999999999998888787754 76677
Q ss_pred HHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 118 VALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 118 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
++|++.|+..|- ...+.++++|..++++ |+.+++....+..+|.++||+++|++.+
T Consensus 126 ~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 779999999876 4677899999999998 9999999999999999999999999987
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-16 Score=164.92 Aligned_cols=367 Identities=10% Similarity=0.021 Sum_probs=200.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc---cchhHHH-HHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFWTI-ASFSI 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~l-~~~~~ 79 (543)
++.+.-.+..+..++.+..+.++++.|+++.+|++..++|.+.+...+...+..|+.|+++||. .||||.. ..+.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3333444566667778888888999999999999999999999999999999999999999994 2666644 55655
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
...+..+++..... .. +........+...++.+++.+...+...++..+..++.++ |.+..++
T Consensus 88 ~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~ 150 (448)
T PRK09848 88 PLMIFSVLVFWVPT--DW----------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAA 150 (448)
T ss_pred HHHHHHHHHHhCcC--CC----------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHH
Confidence 55554444422210 00 0011234445555677888999998888888887766432 6666555
Q ss_pred hhhh-----HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcc
Q 009129 160 FYLS-----INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSN 234 (543)
Q Consensus 160 ~~~~-----~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
-.+. .+++..++|.+.+.........+..+. .+..+++.+.........++..+++.+..
T Consensus 151 r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~-------------- 215 (448)
T PRK09848 151 RGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQP-------------- 215 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCC--------------
Confidence 5443 345556666665543211111111111 11112222221111111111000000000
Q ss_pred cccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHH
Q 009129 235 VVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIV 314 (543)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (543)
...+. + +...+.|.+........+...
T Consensus 216 --------------------------------~~~~~----------------~-----~~l~~n~~f~~~~~~~~~~~~ 242 (448)
T PRK09848 216 --------------------------------SLKIS----------------L-----QTLKRNRPLFMLCIGALCVLI 242 (448)
T ss_pred --------------------------------CHHHH----------------H-----HHHhCCchHHHHHHHHHHHHH
Confidence 00000 0 000111112111111111111
Q ss_pred HHhhccCcceEEEEecccccCCCCCCcccChhhhhccc-hhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHH
Q 009129 315 FATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFD-TLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI 393 (543)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 393 (543)
..........++..+..+.+.. .+.+...+ .+..++..++.. ++.+| .++++.+.+|.++
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~l~~----~l~~r-------~g~~~~~~~g~~~ 303 (448)
T PRK09848 243 STFAVSASSLFYVRYVLNDTGL--------FTVLVLVQNLVGTVASAPLVP----GMVAR-------IGKKNTFLIGALL 303 (448)
T ss_pred HHHHHhhhheeeEeeecCChHH--------HHHHHHHHHHHHHHHHHHHHH----HHHHH-------hCcHHHHHHHHHH
Confidence 1112222233333322111110 11111111 122222333322 23444 5666778888888
Q ss_pred HHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcc-------hHHHHHH
Q 009129 394 SIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA-------MRSLCSA 466 (543)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g 466 (543)
..++.+...+.. ..+.+...+.+++.++|+++..+..++...|..|++ .+|.++|
T Consensus 304 ~~i~~~~~~~~~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 304 GTCGYLLFFWVS------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHHHHcC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 777766555421 123445556678899999999999999999988754 4699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009129 467 LSLTTVAVGNYLSTLLVTIVTKVTTK 492 (543)
Q Consensus 467 ~~~~~~~ig~~l~~~i~~~~~~~~~~ 492 (543)
+.++...+|..+++.+.+.+.+..|.
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998876654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=163.26 Aligned_cols=149 Identities=17% Similarity=0.104 Sum_probs=136.7
Q ss_pred hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchH
Q 009129 34 QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQT 113 (543)
Q Consensus 34 ~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (543)
+++.+++++|++...+.+.+.+..|+.|.+.||+ |+|-.+++|..++...+++.++..+ .
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s-------------------y 159 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS-------------------Y 159 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch-------------------h
Confidence 4567788999999999999999999999999998 9999999999999999999999876 7
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHH
Q 009129 114 AVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAV 193 (543)
Q Consensus 114 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~ 193 (543)
++++++|.+||+|.+....+..++++|.+|++.+ |++++|..-....+|-.+||.++|.+.+..|++.+|++.++
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~ 234 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI 234 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence 8999999999999999999999999999998873 89999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCc
Q 009129 194 AMAIAVVFFFSGSR 207 (543)
Q Consensus 194 ~~~i~~~~~~~~~~ 207 (543)
..++...+-++..+
T Consensus 235 v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 235 VLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHheeC
Confidence 87776665555443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-16 Score=154.49 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=124.3
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhh
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTA 92 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~ 92 (543)
-|+..-......-.+.+++++.++++..|++++..++..++.+++++.|++.+|+ |+|+.++.|+.+++++..+..=++
T Consensus 21 lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa 99 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA 99 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333333444555677889999999999999999999999999999999999999 999999999999999988875333
Q ss_pred cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHh
Q 009129 93 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS 172 (543)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~ 172 (543)
+ ......++++.++.|.|.+..+.+..++++.+.|+++ -.+-++..+....+|+.+||
T Consensus 100 ~----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 100 S----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred h----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHH
Confidence 2 1348889999999999999999999999999999987 56667888889999999999
Q ss_pred HHHHHhhc
Q 009129 173 SVLVWIQM 180 (543)
Q Consensus 173 ~i~~~~~~ 180 (543)
.+++++..
T Consensus 158 ~~g~~lil 165 (422)
T COG0738 158 LLGSSLIL 165 (422)
T ss_pred HHHHHHHH
Confidence 99998876
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=162.94 Aligned_cols=372 Identities=8% Similarity=0.008 Sum_probs=214.4
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhh----hccch-hHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLAD----SYMGR-FWTIASFS 78 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Gr-k~~l~~~~ 78 (543)
++.+.-.+..+..++.+..+.++++.|+++.+|++..++|.+.++.-+..++..|+.|+++| |+ || |+-++.+.
T Consensus 6 ~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~ 84 (473)
T PRK10429 6 TTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGT 84 (473)
T ss_pred hHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhh
Confidence 34444445666777888888999999999999999999999999999999999999999999 77 88 56666677
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 79 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
..++++.+++...++.+ .......+++..++.+++.........++.+|+.+++++ |.+..+
T Consensus 85 i~~~i~~~llf~~p~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~ 146 (473)
T PRK10429 85 LANSVVLFLLFSAHLFE-------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVP 146 (473)
T ss_pred HHHHHHHHHHHcCCCCC-------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHH
Confidence 77777766664332100 111244455556677888888899999999999954332 888888
Q ss_pred hhhhhHhHHHHHHhHHHHHhhcc-------cccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHh
Q 009129 159 WFYLSINIGALVASSVLVWIQMN-------VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFR 231 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~~~~-------~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (543)
+.....++|..+.+.+...+... .+|+....+.+++.++..+......|+. .++++.++.
T Consensus 147 ~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~-~~~~~~~~~------------ 213 (473)
T PRK10429 147 YPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV-YSSDNQVSA------------ 213 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec-CCccccccc------------
Confidence 87777788766665554433221 2355444444444333332222222221 100000000
Q ss_pred hcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 009129 232 KSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWAS 311 (543)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (543)
+.++....+.. +.+.+.|.+...+...+.
T Consensus 214 ------------------------------~~~~~~~~~~~---------------------~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 214 ------------------------------EGSHLTLKDIV---------------------ALIYKNDQLSCLLGMALA 242 (473)
T ss_pred ------------------------------cccCCCHHHHH---------------------HHHhcCHHHHHHHHHHHH
Confidence 00000000000 000111222222222222
Q ss_pred hHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHH
Q 009129 312 GIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGL 391 (543)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 391 (543)
........+....++..+... +.. ..+.+.....+..++..++.. ++.+| +++++.+..+.
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~~-~~~-------~~~~~~~~~~i~~ii~~~~~~----~l~~r-------~gkk~~~~~~~ 303 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVIG-DAD-------LFPYYLSYAGAANLVTLILFP----RLVKS-------LSRRILWAGAS 303 (473)
T ss_pred HHHHHHHHhhheeeEEEEECC-CHH-------HHHHHHHHHHHHHHHHHHHHH----HHHHH-------cCcHHHHHHHH
Confidence 222222323333344333211 100 011122222233333333332 34444 45556666666
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccC-------cchHHHH
Q 009129 392 LISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP-------DAMRSLC 464 (543)
Q Consensus 392 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~ 464 (543)
.+..++.+........ .+.+.+..++..++.+++.+...+..+++..|..+ ++..|..
T Consensus 304 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~ 368 (473)
T PRK10429 304 IFPVLSCGVLLLMGLA---------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIA 368 (473)
T ss_pred HHHHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHH
Confidence 6655554443321000 01234445556677888988888998999999866 4556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009129 465 SALSLTTVAVGNYLSTLLVTIVTKVTTK 492 (543)
Q Consensus 465 ~g~~~~~~~ig~~l~~~i~~~~~~~~~~ 492 (543)
.|..++..-+|..+++.+.+.+.+..|.
T Consensus 369 ~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 369 YSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999887764
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-15 Score=158.93 Aligned_cols=376 Identities=14% Similarity=0.090 Sum_probs=221.1
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc-----hhHHHHHHHHHHH-
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-----RFWTIASFSIIYC- 82 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rk~~l~~~~~~~~- 82 (543)
+....+...+. +.+...+..++++++|.|.++.+...+...+...+-++ .|.++||+ + ||+.++++.++..
T Consensus 31 ~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 31 GLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHH
Confidence 33467778887 77888888999999999999999999888888888665 99999999 8 8888888876663
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++...++... .......+.+++.+++.+...++..++..|..+ ++++ .++...++.+.
T Consensus 108 ~~~~~l~~~~------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~ 165 (468)
T TIGR00788 108 ILYGLLPGKV------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWG 165 (468)
T ss_pred HHHHhccccc------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHH
Confidence 3322222111 123344447788999999999999999999998 4422 15556777788
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcch
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS 242 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (543)
..++|..+|+.++|++.+.++|+..|++.++..++..+.....+++.+...|+..+... .
T Consensus 166 ~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~-~------------------- 225 (468)
T TIGR00788 166 ASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE-M------------------- 225 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch-h-------------------
Confidence 88899999999999999999999999998877666644333332211011111000000 0
Q ss_pred hhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCc
Q 009129 243 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQM 322 (543)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (543)
... ...........+... .-| +...++.+...+.+.+.. +.......
T Consensus 226 --~~~-----------~~~~~~~~~~~~~~~------------~l~------~~l~~~~i~~~l~fifl~--~~~~~~~~ 272 (468)
T TIGR00788 226 --NMA-----------LLTLGVLANVKVQIL------------GLR------GAIQLLEIAKPLIFIFLS--YANLPGAS 272 (468)
T ss_pred --hhh-----------hhhhhHHHHHHHHHH------------HHH------HHHhcHHHHHHHHHHHHH--HhhcCCCC
Confidence 000 000000000000000 000 000112222222221111 11222222
Q ss_pred ceEEEEecccccCCCCCCcccChhhhhc---cchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 009129 323 STMFVLQGNTMDQHMGPNFKIPSASLSL---FDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV 399 (543)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 399 (543)
.+.+..+.. ..+ .++...+. ...++.++... +.+|..+| .+.++.+.++.++.+++..
T Consensus 273 ~~~f~~~~~----~lG----~s~~~~G~~~~~~~v~~i~g~~--------~~~~~~~~---~~~r~~l~~~~~l~~~~~~ 333 (468)
T TIGR00788 273 GSVFCATTQ----CLP----GGPSFSGMSKVVGNLGSLCGVG--------GYDRFLKT---FPYRLLFGVTTLLYTLSSL 333 (468)
T ss_pred ceeEEEEcc----cCC----CCcchhhhHHHHHHHHHHHHHH--------HHHHHHhh---CCHHHHHHHHHHHHHHHHh
Confidence 222222111 121 22222222 22223333333 33333333 6666777778777777664
Q ss_pred HHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 009129 400 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS 479 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~ 479 (543)
...... .+++.. .+ ....+......++.+++.++...+...++.+.+|++.+|+..|+.++..++|..++
T Consensus 334 ~~~~l~-~~~~~~--~g-------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~ 403 (468)
T TIGR00788 334 FDLILV-KRWNLA--FG-------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVS 403 (468)
T ss_pred Cceeee-eccccc--cC-------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHH
Confidence 432111 111100 00 01223344456777888888888889999999999999999999999999999999
Q ss_pred HHHHHHhHhhhc
Q 009129 480 TLLVTIVTKVTT 491 (543)
Q Consensus 480 ~~i~~~~~~~~~ 491 (543)
+.+++.+.+..+
T Consensus 404 ~~~gg~l~~~~g 415 (468)
T TIGR00788 404 GFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHcC
Confidence 999999987655
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=157.30 Aligned_cols=175 Identities=10% Similarity=-0.058 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhh--HHHHHHHHhhhhhhh-HHHhhhccchhHHHHHHHHHH-H
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNN--VTNWSGTCYITPLIG-AFLADSYMGRFWTIASFSIIY-C 82 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~--~~~~~~~~~i~~~~~-G~laD~~~Grk~~l~~~~~~~-~ 82 (543)
..+....+...+.+..+.+.+|.|++ +.|.|..+.|.. .........+.+|+. ++.+||+ ||||..++...+. .
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence 34556667777777888889999886 569999999997 355677777777777 6689998 9999976665432 2
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++...+..... .......++...++.++..+...+...++..|..++++ ++...+...+
T Consensus 82 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~ 140 (390)
T TIGR02718 82 ACLASLALVGP---------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIA 140 (390)
T ss_pred HHHHHHHcCCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHH
Confidence 22222221110 00112333444455666777777777778788777666 7777777777
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
+..+|..+|+.+.+++.+++|||..|++.++..++..+....
T Consensus 141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999988899999999999999998776655554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=160.99 Aligned_cols=405 Identities=13% Similarity=0.077 Sum_probs=220.3
Q ss_pred CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCC-chHHH
Q 009129 37 QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTG-AQTAV 115 (543)
Q Consensus 37 ~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (543)
+++...+.+..+..++..+++++.||++|++ |||+++-..++++.+++++++++.. |++. .-..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~-------------~~~~~~~m~~ 146 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG-------------TTSPLGVMMT 146 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC-------------CCCCcchhhH
Confidence 5567788899999999999999999999999 9999999999999999997776632 2233 45788
Q ss_pred HHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh----cc----------
Q 009129 116 TFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ----MN---------- 181 (543)
Q Consensus 116 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~----~~---------- 181 (543)
+.+.|++.|+|.|+-.|...+..+|...++. ||...+......++|...|.+++-.+. ..
T Consensus 147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~l 220 (538)
T KOG0252|consen 147 LCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHL 220 (538)
T ss_pred HHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHH
Confidence 9999999999999999999999999998887 888888777777776666654443321 11
Q ss_pred -cccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhh--hhhhhhhhhcccCc
Q 009129 182 -VGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLL--YETADEECNIQGSR 258 (543)
Q Consensus 182 -~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 258 (543)
.=||..|.+..+. +++++..+.+ +||++++. .+++.++.+.+-.+
T Consensus 221 d~vWRl~~glg~vp---a~~~ly~Rl~-----------------------------M~Et~~Y~al~~~~~~~a~~d~~k 268 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVP---ALLVLYFRLK-----------------------------MPETARYTALVSKKLKQAAGDMKK 268 (538)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhhc-----------------------------CCcchhHHHHhhcCHhhhhhcccc
Confidence 1288887776543 2232222211 11111111 00000000000000
Q ss_pred ccccCcccchhhhhhhhhcccccCCCCCCCc-ccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCC
Q 009129 259 KLESTSKFKFFDKAAVETQTDRVKGSADPWR-LCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHM 337 (543)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (543)
.+.. .++......... ....++. .+.... ..+ ...+ ++.....++.......+.-+.|. ..-.++
T Consensus 269 ~~~~-----~~~~~~~~~~~~---~~~~~~~~~F~~~f-~~~-hg~~---Llgt~~~WFllDiafy~~nL~~s-~I~~~i 334 (538)
T KOG0252|consen 269 VLSV-----DIEAESTAESDV---PPPSNSFGLFSRLF-LRW-HGKH---LLGTAGTWFLLDIAFYGQNLFQS-VIFSAI 334 (538)
T ss_pred cccc-----ccchhhccccCC---CCcccccchHHHHH-HHH-HHHH---HHHHHHHHHhhhhhhhccccHHH-HHHHhh
Confidence 0000 000000000000 0011111 111110 111 0011 11111111111111111111111 001111
Q ss_pred C--CCcccChhh-hhccchhHHHHHHHhhhhh-hhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 009129 338 G--PNFKIPSAS-LSLFDTLSVIFWAPIYDIV-IVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVK 413 (543)
Q Consensus 338 ~--~~~~~~~~~-~~~~~~l~~~~~~~l~~~~-~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~ 413 (543)
+ ++-+..... -.......+.+++.+.++. ...+.++ .++.+.-+.|+.++++.++.++..-..
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-------iGRk~iq~~GF~~~~i~~~~~~~~y~~------ 401 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-------IGRKYIQLMGFFIMTIFFFVIAGPYNQ------ 401 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-------hhhHHHHHhhHHHHHHHHHHHcCCccc------
Confidence 1 000000000 0111122333333332222 2223344 444466678999999888877653210
Q ss_pred ccCccCCCCccchhHHHHHHH-HHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009129 414 RNNYYDIETIPMTIFWQVPQY-FIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTK 492 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~-~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~ 492 (543)
..+... .++.+ +...+++-.-+.+...+.+|.+|.+.||++-|++-.+.-+|.+++........+..
T Consensus 402 -------~~~~~G---f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-- 469 (538)
T KOG0252|consen 402 -------LENTIG---FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-- 469 (538)
T ss_pred -------ccccCc---eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc--
Confidence 011111 11111 22233333344666778899999999999999999999999999998888777521
Q ss_pred CCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccCCC
Q 009129 493 NGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGRA 542 (543)
Q Consensus 493 ~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 542 (543)
+|++ .+....+++++++++++.++.+++. ++++|++||..
T Consensus 470 ------yp~~---~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~ 509 (538)
T KOG0252|consen 470 ------YPPN---IGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEIS 509 (538)
T ss_pred ------CCcc---ccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhc
Confidence 2222 3345678999999999877766655 99999887653
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=172.87 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=149.8
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
.+....+......++.......++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.++.+++++++++.
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHHH
Confidence 33334555566778888888899999999999999999999999999999999999998 99999999999999999999
Q ss_pred HHhhcccCC-----------------CCCCCCC------------CCCC-C--CchHHHHHHHHHHHHhhccCCCcchhh
Q 009129 89 TLTASVSGL-----------------KPSCDKD------------ACHP-T--GAQTAVTFVALYLIALGTGGIKPCVSS 136 (543)
Q Consensus 89 ~~~~~~~~~-----------------~~~~~~~------------~~~~-~--~~~~~~~~~~~~l~g~g~g~~~~~~~~ 136 (543)
++.+....- ..-|+.. .|-+ . ...+..++++|+++|+|.+...+...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 876411000 0012210 1100 1 124667889999999999999999999
Q ss_pred hhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc----------------------ccchhhhHHHHH
Q 009129 137 FGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV----------------------GWGWGFGIPAVA 194 (543)
Q Consensus 137 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~----------------------g~~~~f~i~~~~ 194 (543)
++.|.+|+++ |+.++++++....+|..+|+++++++.+.+ +||..|++.+++
T Consensus 196 ~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l 269 (633)
T TIGR00805 196 YIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV 269 (633)
T ss_pred hhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999887532 277778887766
Q ss_pred HHHHHHHHHhcC
Q 009129 195 MAIAVVFFFSGS 206 (543)
Q Consensus 195 ~~i~~~~~~~~~ 206 (543)
.++..+.++...
T Consensus 270 ~~l~~v~l~~~p 281 (633)
T TIGR00805 270 ALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHhCc
Confidence 655544444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-16 Score=163.99 Aligned_cols=360 Identities=14% Similarity=0.137 Sum_probs=224.1
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhh----hccchhHHHH-HHHHHHHHHHHH
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLAD----SYMGRFWTIA-SFSIIYCLGMTL 87 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Grk~~l~-~~~~~~~i~~~~ 87 (543)
.+..++.+.....++..|+++.+|+++..+|.+..+.-+..++..|+.|+++| |+ ||||..+ +|.....++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35556667777778999999999999999999999999999999999999999 78 8666555 576777777777
Q ss_pred HHHh-hcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 88 LTLT-ASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
+... +. .. +.......+.+..++..++.........++.+|..+++++ |.+..++......+
T Consensus 89 lf~~~p~--~~----------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~ 151 (428)
T PF13347_consen 89 LFSPPPA--GL----------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMI 151 (428)
T ss_pred hhccccc--hh----------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHH
Confidence 7654 20 00 0112244556677777999999999999999999986542 89999998888888
Q ss_pred HHHHHhHHHHHhhccc-------ccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCC
Q 009129 167 GALVASSVLVWIQMNV-------GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 239 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~-------g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (543)
|.++...+.+.+.+.. +|++...+.+++.++..+......||.+.+.+++++..
T Consensus 152 g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~------------------- 212 (428)
T PF13347_consen 152 GSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI------------------- 212 (428)
T ss_pred HHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccc-------------------
Confidence 8876666665554322 47777776666555555544444443111100000000
Q ss_pred cchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhc
Q 009129 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY 319 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (543)
++.+ .++ ...+.|.....+....+....+...
T Consensus 213 ---------------------------~~~~----------------~~~-----~~~~nr~~~~l~~~~~~~~~~~~~~ 244 (428)
T PF13347_consen 213 ---------------------------SLRD----------------SLR-----SLFRNRPFRILLLAFFLQWLAFALM 244 (428)
T ss_pred ---------------------------cccc----------------chh-----hhcccchHHHHHHHHHHHHhhhhhh
Confidence 0000 000 0001111111111111111111111
Q ss_pred cCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 009129 320 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV 399 (543)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 399 (543)
+....++..+ ..+ .....+.+.....+..++..|+. .++.|| .++++.+..+.++.+++.+
T Consensus 245 ~~~~~y~~~~------vl~--~~~~~~~~~~~~~~~~~v~~~~~----~~l~~r-------~gk~~~~~~~~~~~~~~~~ 305 (428)
T PF13347_consen 245 NTFLPYYFTY------VLG--NEGLISIFMLIFFVASIVGSPLW----GRLSKR-------FGKKKVYIIGLLLAALGFL 305 (428)
T ss_pred hhHHHHHHHH------Hhc--CchhhHHHHHHHHHHHHHHHHHH----HHHHHH-------ccceeehhhhHHHHHHHHH
Confidence 1111111111 111 00011122222222333333332 334555 4455677888888888888
Q ss_pred HHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCc-------chHHHHHHHHHHHH
Q 009129 400 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPD-------AMRSLCSALSLTTV 472 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~ 472 (543)
...+... .+.++..+..++.+++.+...+..++...|..+. +..|...|++++..
T Consensus 306 ~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~ 367 (428)
T PF13347_consen 306 LLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI 367 (428)
T ss_pred HHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence 7776631 3667778888999999999999999999998873 45699999999999
Q ss_pred HHHHHHHHHHHHHhHhhhccCC
Q 009129 473 AVGNYLSTLLVTIVTKVTTKNG 494 (543)
Q Consensus 473 ~ig~~l~~~i~~~~~~~~~~~~ 494 (543)
-++..+++.+.+.+.+..|.++
T Consensus 368 k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 368 KIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCcCC
Confidence 9999999999999988766543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=157.21 Aligned_cols=155 Identities=13% Similarity=0.047 Sum_probs=136.5
Q ss_pred HhHHHHHHHHhhhcCCCchh-hhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009129 22 GMSTNLVNYLQKQLNQGNVT-ASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS 100 (543)
Q Consensus 22 ~~~~~l~~~l~~~l~~s~~~-~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 100 (543)
...++...|+.+++|+|..| .|.+.+++..++.++.+++|+++||+ |.|+++.++++...+..++.+++++
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S------- 114 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS------- 114 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34566778999999999999 99999999999999999999999999 9999999999999999999999865
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 101 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
...+.+.|++.|++.|... +...++..++|+++ |+++.++...+.++|.++++++++++ .
T Consensus 115 ------------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~ 174 (511)
T TIGR00806 115 ------------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-V 174 (511)
T ss_pred ------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 8899999999999999999 99999999999999 99999999999999999999999994 4
Q ss_pred ccccchhhhHHH---HHHHHHHHHHHh
Q 009129 181 NVGWGWGFGIPA---VAMAIAVVFFFS 204 (543)
Q Consensus 181 ~~g~~~~f~i~~---~~~~i~~~~~~~ 204 (543)
.+||++-+-+.- ....+++++.++
T Consensus 175 s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 175 TLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 679987555443 344444444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=161.85 Aligned_cols=384 Identities=13% Similarity=0.068 Sum_probs=216.0
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
....++.+++|-+ ....|+.+...++..+..++.|.++|.+ |||+.++.+.++..+|+++++.+.+
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~------------ 130 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN------------ 130 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc------------
Confidence 3446788888865 6677888999999999999999999999 9999999999999999999998865
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccc
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~ 185 (543)
...++++-.+.|+|.|... .....++|..|.+. |.....+.....-.....+|.++..+..+-+||
T Consensus 131 -------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 131 -------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred -------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 8889999999999977655 45666899999877 766655555444444445666776666667899
Q ss_pred hhhhHHHHHHHHHHHHH-HhcCccee-ccCCCCCh------HHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccC
Q 009129 186 WGFGIPAVAMAIAVVFF-FSGSRLYR-IQKPGGSP------LTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGS 257 (543)
Q Consensus 186 ~~f~i~~~~~~i~~~~~-~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (543)
|.|++..+...++++.. ++++|..+ ..+.++.+ ..|+.+.++....-.....+-+ ++..+..
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~------wgG~~~~---- 266 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS------WGGYPYY---- 266 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh------ccCCCCC----
Confidence 99999988766655443 33333222 11111211 1355555544433322222111 0000000
Q ss_pred cccccCcccchhh------hhhhhhcccccCC-CCCCCcccchhhHHHHHHHHHHH-HHHHHhHHHHhhccCcceEEEEe
Q 009129 258 RKLESTSKFKFFD------KAAVETQTDRVKG-SADPWRLCTVTQVEELKAIIRLL-PVWASGIVFATVYSQMSTMFVLQ 329 (543)
Q Consensus 258 ~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 329 (543)
...+......+. ..-...+.-.+.+ .-.|+++++ ++|.+...+ ..+.....++... .++..+
T Consensus 267 -~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~-----~~r~~~~~lvi~fi~G~~~~s~~----~l~p~~ 336 (599)
T PF06609_consen 267 -PWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFK-----DRRGFAALLVISFISGMNFFSVN----ILWPQQ 336 (599)
T ss_pred -CCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhc-----cchHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 000011111100 0101111111101 123444332 222222111 1111221221111 111111
Q ss_pred ccccc-CCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 330 GNTMD-QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVR 408 (543)
Q Consensus 330 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~ 408 (543)
...+. .... +. ...+..+.....+..+...+... +.++. +| .++.+.++.++++++...++...
T Consensus 337 ~~~vf~~d~~-~~-~~~~~~s~~~~fg~~~g~~i~g~----l~~~i-r~-----~Kw~li~~~~~~ta~~Gama~~~--- 401 (599)
T PF06609_consen 337 VVNVFGSDPI-SI-TEIGWISSPVGFGSCAGAVILGL----LFSKI-RH-----IKWQLIFGSVLMTAFCGAMAAVR--- 401 (599)
T ss_pred HhhhccCCCc-cc-ceeehhhhhHHHHHHHHHHHHHH----HHHHc-cc-----hhHHHHHHHHHHHHHHHHHHHcc---
Confidence 11110 0000 00 01122333333343443333333 33332 12 23556778777777665555432
Q ss_pred HhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009129 409 LNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487 (543)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~ 487 (543)
++++ . ..+...++.+++.+.........+.-..|++.-|+++|+..+.+.+|+.+|..+...+.
T Consensus 402 ------------~~n~-~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 402 ------------PDNK-N--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ------------CCCc-c--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111 1 22344677788888888777888888999999999999999999999999998876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-15 Score=144.05 Aligned_cols=434 Identities=12% Similarity=0.060 Sum_probs=243.6
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
....-+.+..+.......+..-++...+.+..+..++......+..+++...|.++|++ ||||......+...+.-++-
T Consensus 82 ~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is 160 (528)
T KOG0253|consen 82 VAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVIS 160 (528)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhh
Confidence 33445556566666666666777777888999999999999999999999999999999 99999999988888877777
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
..+++ +..+.+.|.+.|+|.|+ .|...++-.+..|..+ |....-+. ....+|.
T Consensus 161 ~~spn-------------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 161 GASPN-------------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQ 213 (528)
T ss_pred cCCCC-------------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHH
Confidence 76643 78899999999999999 8999999999999888 77776555 5567888
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhh
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETA 248 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (543)
++.-.+.=....++||||-.....+...+.+++........+..-.++++ .+....+--..+.++...|.-......+.
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~-~kAletL~kiArmNg~qlplgvl~~s~~~ 292 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDD-YKALETLHKIARMNGKQLPLGVLESSAID 292 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCCh-HHHHHHHHHHHHhcCCCCCcceeeeehhh
Confidence 88877776667788999887776654444433333222211221122222 22223333344555555665444333322
Q ss_pred hhhhhcccCcccccC-cccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHh-------HHHHhhcc
Q 009129 249 DEECNIQGSRKLEST-SKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG-------IVFATVYS 320 (543)
Q Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 320 (543)
++|+.+....+...+ .+..-.+... +++. +-+|+.+..+..++.. +..-.-.+
T Consensus 293 ~~e~e~~~~~~~~~~a~ke~rg~~~n----------------Llsp---~lrkttlllw~iwfgnafsyyg~VLlttelf 353 (528)
T KOG0253|consen 293 RQEQEESDLDDSKSSAAKEVRGGTTN----------------LLSP---KLRKTTLLLWRIWFGNAFSYYGSVLLTTELF 353 (528)
T ss_pred hhhhhhhchhhhhhccccccccchHh----------------hcCh---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222111111110000 0000000000 0111 2344433333222211 11111122
Q ss_pred CcceEE----EEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 009129 321 QMSTMF----VLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIF 396 (543)
Q Consensus 321 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~ 396 (543)
|..... .....+.............+.... +..-+...-...+...+.+|+++| +.|...+++.++
T Consensus 354 qsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdl---litslaefPGlLIt~~iverlGRK-------kTMal~l~~f~i 423 (528)
T KOG0253|consen 354 QSGDACPLYNRFLPTELETRANCPLSVAKDYRDL---LITSLAEFPGLLITGVIVERLGRK-------KTMALSLILFGI 423 (528)
T ss_pred hccCccccchhcchhHHHhhhcCCccchhHHHHH---HHHHHhhCCchhHHHHHHHHhcch-------hHHHHHHHHHHH
Confidence 222211 111111111111011111111111 111111110001111134443333 556666666665
Q ss_pred HHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHH
Q 009129 397 SMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGN 476 (543)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~ 476 (543)
..+....- . +.+ ....++ +..-+.....+.+.+.|.-|.+|...|+++.|....++.+|+
T Consensus 424 flfll~~c--~-------------~rn-~~tvll----f~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIgg 483 (528)
T KOG0253|consen 424 FLFLLTTC--K-------------TRN-AYTVLL----FTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGG 483 (528)
T ss_pred HHHHHHHh--c-------------Ccc-hhHHHH----HHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhh
Confidence 55444322 1 111 111222 222333344567889999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecc
Q 009129 477 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 538 (543)
Q Consensus 477 ~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~ 538 (543)
++.|.+. +..+.+. ...-.+.+++.+++.+...++..++|+|..
T Consensus 484 I~~p~iA-~~~e~s~-----------------sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 484 IFSPVIA-MRAELST-----------------SLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhHHH-HHhccce-----------------eehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 9999988 3332211 112456678888888888888888888753
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-14 Score=152.30 Aligned_cols=153 Identities=15% Similarity=0.044 Sum_probs=120.7
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
.....+++++|+|..+.+++.++.. ...++.+++|+++||+ |||++++++.+++.++.++++++.+. .
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-~--------- 115 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-V--------- 115 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-c---------
Confidence 4556788999999999999987743 3445677899999999 99999999999999999999987320 0
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH-HhHHHHHhhccccc
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV-ASSVLVWIQMNVGW 184 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l-~~~i~~~~~~~~g~ 184 (543)
...+.+.+++.|++.|+|.+...+.....+.++|| ++ ||.+.++.....++|+.+ +++..+++. .+|
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~ 183 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNT 183 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhH
Confidence 01248889999999999999998999999999997 45 999999999999999975 555556554 357
Q ss_pred chhhhHHHHHHHHHHHHH
Q 009129 185 GWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 185 ~~~f~i~~~~~~i~~~~~ 202 (543)
+..|++.++..++..++.
T Consensus 184 ~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 184 SAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776555443333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=163.32 Aligned_cols=421 Identities=14% Similarity=0.093 Sum_probs=252.6
Q ss_pred hHHHHHHHHHhHhHHHhHHHHH---HHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLV---NYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~---~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|.+++..|+.+...+|+..... ..++++++.+..+++|+.++.+....+..|+.+.+.||+ |.|++.+.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 4566677777777777765544 445678999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHH-HHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL-YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
|.++..++++ .+.+++.. ++.|+|.|+........+...|+++ |+.+.++...
T Consensus 124 g~~lssF~~~-------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~ 177 (509)
T KOG2504|consen 124 GLLLSSFATS-------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVS 177 (509)
T ss_pred HHHHHHHHhh-------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhc
Confidence 9999999975 66666655 7789999999999999999888754 8999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcch
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKS 242 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (543)
+..+|.++=|.+..++.+.+|||..+++-+.+.+-.++.-...+|......+.+....+ + .....+..+.
T Consensus 178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~--~--------~~~~~~~~~~ 247 (509)
T KOG2504|consen 178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR--N--------SAASVESTPK 247 (509)
T ss_pred cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhc--c--------cccccccccc
Confidence 99999999999999999999999999998877765565555555543332222100000 0 0000000000
Q ss_pred hhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCC--CCcc-cc---hhhHHHHHHHHHHHHHHHHhHHHH
Q 009129 243 LLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSAD--PWRL-CT---VTQVEELKAIIRLLPVWASGIVFA 316 (543)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~ 316 (543)
. .+. +..+.....++.... .........+ ... +-+. .. .+-.++++-+...+...+....+.
T Consensus 248 ~-~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~ 315 (509)
T KOG2504|consen 248 P-VEL-RISERDSGLKKLSLS------NLATLKRGPD----KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFN 315 (509)
T ss_pred c-ccc-ccccCCCCCCccccc------chhhhhhCCc----cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHH
Confidence 0 000 000000000000000 0000000000 000 0000 00 011111111111111111111111
Q ss_pred hhccCcceEEEEecccccCCCCCCccc-ChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH
Q 009129 317 TVYSQMSTMFVLQGNTMDQHMGPNFKI-PSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI 395 (543)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 395 (543)
. +..+... ... .. ++.. ....+..+..+.-++..++.+. +.++.. ........++++..+
T Consensus 316 ~-----p~~~l~~--~~~-~~--g~~~~~aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 316 V-----PFVYLPS--YAK-SL--GLSSNDAAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAG 376 (509)
T ss_pred H-----HHHHHHH--HHh-hc--CCChhhhHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHH
Confidence 1 1111100 001 11 1111 1111222222222333333322 222211 223344456666666
Q ss_pred HHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHH
Q 009129 396 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475 (543)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig 475 (543)
++....... .+.+.++...+++|+..+...........|+.+.+.-..+.|+..++++++
T Consensus 377 l~~~~~p~~--------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 377 LARLFLPFA--------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG 436 (509)
T ss_pred HHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence 665444443 355677888899999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009129 476 NYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA 530 (543)
Q Consensus 476 ~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ 530 (543)
..+|+.+.+.+.|.++ .|+..|+..++..+++....++..
T Consensus 437 ~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999998876442 345567788888888776655544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=152.66 Aligned_cols=390 Identities=9% Similarity=0.003 Sum_probs=228.3
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH-
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL- 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i- 83 (543)
+.+......++..+++-...++++.+++++.|+|.+++|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence 345566667777778888899999999999999999999999999999999999999999998 977766555444332
Q ss_pred -HHHHH----HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 84 -GMTLL----TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 84 -~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
+.... ++... +.....+++-+..+++.....|...+++.+.... .+-=+|
T Consensus 87 ~~pff~~v~~pll~~-----------------n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------~~feYG 141 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQS-----------------NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------NGFEYG 141 (412)
T ss_dssp CHHHHHHTHHHHHHT-----------------T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--------HSS-HH
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--------hcCCcc
Confidence 22222 11111 0011222222223444444455555665554322 233344
Q ss_pred hhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccC
Q 009129 159 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVP 238 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
-......+|.+++..++|++.+ .+-+..|++.....++..++....++..+++.+..+.
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~-------------------- 200 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA-------------------- 200 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT--------------------
T ss_pred hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc--------------------
Confidence 5566788999999999999876 4566778876654444444433333321111100000
Q ss_pred CcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHh-HHHHh
Q 009129 239 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASG-IVFAT 317 (543)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 317 (543)
. ++ ++++.+..+. .++.+.|+++.+..+.... ..+..
T Consensus 201 --~----------~~--------~~~~~~~~~~----------------------~~l~k~~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 201 --L----------GA--------KKDKVSLKDV----------------------LSLFKMRNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp --S----------SS--------------HHHH----------------------HHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred --c----------cc--------CCCCCcHHHH----------------------HHHhcchhHHHHHHHHHHHHHHHHH
Confidence 0 00 0000000000 0011122333333332222 33333
Q ss_pred hccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 009129 318 VYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 397 (543)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 397 (543)
..+|.+.++..+. + .-...+..++.++.+.+.+=.+++ .+..++.+| .++++.+.++.+++++-
T Consensus 239 fdqqf~~y~~~~f---~-----~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~r-------ig~k~~Lllag~i~~iR 302 (412)
T PF01306_consen 239 FDQQFPIYFASFF---Q-----SAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINR-------IGAKNLLLLAGVIMAIR 302 (412)
T ss_dssp HHHHHHHHHHHTS---S-----SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---c-----ccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHh-------cChHhHHHHHHHHHHHH
Confidence 3344333222111 0 111223444444444433333222 222335555 66778888888888888
Q ss_pred HHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHH-HHHHHHHH
Q 009129 398 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS-LTTVAVGN 476 (543)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~ 476 (543)
....++. .+.+++.+.-.+.++-..+......-|+.+.+|++..++...+. +++.++|.
T Consensus 303 i~~~~~~--------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~ 362 (412)
T PF01306_consen 303 IIGSGFA--------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGI 362 (412)
T ss_dssp HHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHH
T ss_pred HHHHhhh--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 8877765 36667777788999998888999999999999999999999985 68999999
Q ss_pred HHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 477 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 477 ~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
.+.+.+.|.+.|..| +...|++++.+.+...++..+..++.++
T Consensus 363 ~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 363 IILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 999999999998553 3456888899888888887777665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=152.14 Aligned_cols=174 Identities=10% Similarity=0.121 Sum_probs=127.3
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc---cchhHHHH-HHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFWTIA-SFS 78 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~l~-~~~ 78 (543)
+|+.+.-.+..+..++.+..+..++..|+++.+|+++..+|.+..+.-+..++.-|+.|+++||. +||||..+ ++.
T Consensus 8 ~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~ 87 (460)
T PRK11462 8 VKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGA 87 (460)
T ss_pred HhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHH
Confidence 34444444566667778888888999999999999999999999999999999999999999972 38776555 566
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 79 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
+.+.++.+++...+. .. .......+.+..++..++.........++.+++.++.++ |++..+
T Consensus 88 i~~~i~~~llf~~p~---~s----------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s 149 (460)
T PRK11462 88 LPFGIVCVLAYSTPD---LS----------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQS 149 (460)
T ss_pred HHHHHHHHHHHhCCC---CC----------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHH
Confidence 777777666654321 10 112244556666677888899889999999999986553 999999
Q ss_pred hhhhhHhHHHHHHhHHHHHhhccc-------ccchhhhHHHHH
Q 009129 159 WFYLSINIGALVASSVLVWIQMNV-------GWGWGFGIPAVA 194 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~~~~~-------g~~~~f~i~~~~ 194 (543)
+.....++|..+++.+...+.+.. +|+....+.+++
T Consensus 150 ~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 150 WRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 999999999888877765544333 355544444443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=155.18 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=128.6
Q ss_pred HhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCC
Q 009129 31 LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTG 110 (543)
Q Consensus 31 l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (543)
+++++|....+.+.+.+++.++++++.+++|.+.||+ .-.+.+....++..+-.++.....+
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~s----------------- 133 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVHS----------------- 133 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 4578889999999999999999999999999999999 9788887777777766655555544
Q ss_pred chHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh------ccccc
Q 009129 111 AQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ------MNVGW 184 (543)
Q Consensus 111 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~------~~~g~ 184 (543)
.+.+++.|++.|+..++..|....+++.++.+++ |+.-+++++...++|.++|.++...+. ...||
T Consensus 134 --~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 134 --FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred --hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 8899999999999999999999999999999999 999999999999999999999888753 35689
Q ss_pred chhhhHHHHHHHHHHHHHHhcCc
Q 009129 185 GWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 185 ~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
||.|.+.+++.++..++.++..|
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred eeehhHHHHHHHHHHheEEEEec
Confidence 99999999876655544444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-14 Score=139.07 Aligned_cols=335 Identities=16% Similarity=0.184 Sum_probs=226.2
Q ss_pred HhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 009129 16 ERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 95 (543)
Q Consensus 16 ~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~ 95 (543)
.+...-++-+.+ .-+++++|.|.+++|...+.-.++..+.+|+..+++.|+ |.++.+..++++.++|.++=...
T Consensus 24 LR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence 444555554444 558899999999999999999999999999999999999 99999999999999998887665
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHH
Q 009129 96 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL 175 (543)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~ 175 (543)
+...++.+-.+.|.|.+......++++.+.||++ -+..++.|..+.++|+.+++.+.
T Consensus 98 ----------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~la 154 (395)
T COG2807 98 ----------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALA 154 (395)
T ss_pred ----------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhh
Confidence 2778899999999999999999999999999976 58899999999999999999999
Q ss_pred HHhhccc-ccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhc
Q 009129 176 VWIQMNV-GWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNI 254 (543)
Q Consensus 176 ~~~~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (543)
..+.++. |||.....=+...+++++.++.-..+.+....++...
T Consensus 155 vpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~----------------------------------- 199 (395)
T COG2807 155 VPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLV----------------------------------- 199 (395)
T ss_pred hHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc-----------------------------------
Confidence 9998877 7998887777666666665544321111000000000
Q ss_pred ccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEeccccc
Q 009129 255 QGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMD 334 (543)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (543)
+ ....|+ +.......+.+-..+..++....+++..+.+++.+..
T Consensus 200 ---------~-------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~ 243 (395)
T COG2807 200 ---------S-------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA 243 (395)
T ss_pred ---------c-------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH
Confidence 0 000111 1111112223445566667777777776655432111
Q ss_pred CCCCCCcccChhhhhccchhHHHHHHHhhhhhhhh-hhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 009129 335 QHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVP-FARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVK 413 (543)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~ 413 (543)
+ -+.+-.+..++-.| ..+..| +.+|. ...+........++.++++.+.+...
T Consensus 244 ~------------aG~llsl~~l~~~~--~~ll~P~la~R~------~n~r~~~~~~~~~~l~G~~G~~~~P~------- 296 (395)
T COG2807 244 E------------AGSLLSLMQLAQLP--TALLIPLLARRS------KNQRPLVVLALLLMLVGLVGLLLAPG------- 296 (395)
T ss_pred H------------hhhHHHHHHHHHHH--HHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHHHHhhh-------
Confidence 1 11111111111111 112233 33442 22334445556666666665555421
Q ss_pred ccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009129 414 RNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPD-AMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTT 491 (543)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~ 491 (543)
...++| .++.|+|.+..+|...+++...+++ +..+.-+|+.+...++=..+||.+.|++.|.++
T Consensus 297 ----------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 297 ----------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred ----------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 123333 3789999999999999999888774 445556677777777888889999999998765
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=137.10 Aligned_cols=363 Identities=15% Similarity=0.126 Sum_probs=194.9
Q ss_pred hhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH-HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHH
Q 009129 42 ASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL 120 (543)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (543)
.+...++..+..++..|+.|.++|+- |+||-++ +...++.++++.+.+... .++....+..
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~~-----------------~~~~~~~~l~ 133 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVSP-----------------GQWWLALVLF 133 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhCc-----------------chHHHHHHHH
Confidence 35667788888999999999999998 7555554 444555566666666521 2244444444
Q ss_pred HHHHhhccCCCcchhhhhhcccCCCCccccc--------------------cccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 121 YLIALGTGGIKPCVSSFGADQFDETDDGERE--------------------KKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 121 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
++.-++.+.......+++.|..++++..... .|++..++-+...++|+++..++.-.+..
T Consensus 134 iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~ 213 (477)
T PF11700_consen 134 IIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVI 213 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778889999999999988720000 01788888888888888887665544422
Q ss_pred c--------cccchhhhHHHHHHH-HHHHHHHhcCccee-ccCCCC-ChHHHHHHHHHHHHhhcccccCCcchhhhhhhh
Q 009129 181 N--------VGWGWGFGIPAVAMA-IAVVFFFSGSRLYR-IQKPGG-SPLTRIMQVIVASFRKSNVVVPADKSLLYETAD 249 (543)
Q Consensus 181 ~--------~g~~~~f~i~~~~~~-i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (543)
. .+.|..+.+.++.-+ .++..++..+++.+ ...|.. +......+.+...+|+.
T Consensus 214 ~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~---------------- 277 (477)
T PF11700_consen 214 SPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI---------------- 277 (477)
T ss_pred cCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH----------------
Confidence 1 234666777665433 34444444443322 111111 11222222222222211
Q ss_pred hhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHH-HHHHhHHHHhhccCcceEEEE
Q 009129 250 EECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLP-VWASGIVFATVYSQMSTMFVL 328 (543)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 328 (543)
++.|.+.+++. .++..-..... ..+...+.
T Consensus 278 -----------------------------------------------~~~~~~~~fLia~~l~~dg~~ti-~~~~~i~a- 308 (477)
T PF11700_consen 278 -----------------------------------------------RKLRQLFLFLIAYFLYSDGVNTI-ISFAGIYA- 308 (477)
T ss_pred -----------------------------------------------HhChHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
Confidence 11111221111 11111000000 00000010
Q ss_pred ecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCch--HHHHHHHHHHHHHHHHHHHHHH
Q 009129 329 QGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQL--QRMGIGLLISIFSMVAAGILEV 406 (543)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~--~~i~~g~~l~~~~~~~~~~~~~ 406 (543)
...++ ++...+..+ .+..-+...+...+..++.|| ++.+ +.+..++++..+ ...++....
T Consensus 309 -----~~~lg----~s~~~l~~~-~l~~~i~a~~Ga~~~g~l~~r-------~g~k~~~~l~~~l~~~~~-i~~~g~~G~ 370 (477)
T PF11700_consen 309 -----TEVLG----MSTTQLIVF-GLVVQIVAIIGALLFGWLQDR-------FGPKTKRTLLISLILWII-IPLYGLFGF 370 (477)
T ss_pred -----HHhcC----cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------hCCchhHHHHHHHHHHHH-HHHHHHHHh
Confidence 11111 222221111 112222222222222334444 3333 334444433322 222222210
Q ss_pred HhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 407 VRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
. .++.| ..+.+...+.-++.|+..+...+.+-++..|+.|++..+...|++.++....+++||.+.+.+
T Consensus 371 ~----~~~~g-------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 371 W----PSFFG-------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred h----hcccC-------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111 123334444557889999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 487 TKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAK 531 (543)
Q Consensus 487 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~ 531 (543)
.+.++. ..+.+..+.++.++++++...+..
T Consensus 440 ~~~tg~---------------~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 440 TDATGS---------------QRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHhCC---------------chhHHHHHHHHHHHHHHHHhhccc
Confidence 987642 234466667777777666544433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-12 Score=129.20 Aligned_cols=367 Identities=13% Similarity=0.106 Sum_probs=230.6
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc---cchhH-HHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFW-TIASFSI 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~-~l~~~~~ 79 (543)
|+...-.+..+..++++.-+..++..|.++..|++...+|.+..+.-+..++.-|+.|.+.||. .||+| =++++.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 3444444566777888999999999999999999999999999999999999999999999974 26554 5556667
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
.+++...++..+++.. .+......++..++.+++.....-...++.+++.++.++ |.+..++
T Consensus 92 p~~i~~~l~F~~p~~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s~ 153 (467)
T COG2211 92 PFAIVAVLLFITPDFS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTSW 153 (467)
T ss_pred HHHHHHHHHHcCCCcc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHHH
Confidence 7888888887764311 123466667777889999999999999999999976653 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhc-------ccccchhhhHHHHHHHHHHHHHHhc-CcceeccCCCCC-hHHHHHHHHHHHH
Q 009129 160 FYLSINIGALVASSVLVWIQM-------NVGWGWGFGIPAVAMAIAVVFFFSG-SRLYRIQKPGGS-PLTRIMQVIVASF 230 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~-------~~g~~~~f~i~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 230 (543)
-....++|.++...+...+.. ..||+..-++-+++..+..++-+.- +++.....+.++ ...+....+..
T Consensus 154 R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~-- 231 (467)
T COG2211 154 RMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL-- 231 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH--
Confidence 999999997776555544432 2355555444444333333322222 222111111110 00000000000
Q ss_pred hhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 009129 231 RKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWA 310 (543)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (543)
..++|.++..+....
T Consensus 232 -----------------------------------------------------------------~~~Nrp~~~~l~~~l 246 (467)
T COG2211 232 -----------------------------------------------------------------IFKNRPLLLLLLMNL 246 (467)
T ss_pred -----------------------------------------------------------------HHccchHHHHHHHHH
Confidence 011122222222333
Q ss_pred HhHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHH
Q 009129 311 SGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIG 390 (543)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 390 (543)
+........+....+|..+..+.++.. ............+... .++.++.+| +++++...+|
T Consensus 247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~-------~~~~~~~~~~~~l~~~----~~~p~L~~~-------~gkk~~~~~~ 308 (467)
T COG2211 247 LLFIAFNIRGSIMVYYVTYVLGDPELF-------AYLLLLASGAGLLIGL----ILWPRLVKK-------FGKKKLFLIG 308 (467)
T ss_pred HHHHHHHHHhhhhheeEEEEcCChHHH-------HHHHHHHHHHHHHHHH----HhHHHHHHH-------hchHHHHHHH
Confidence 333333333444445554443222211 1111111111111111 222334454 5556888899
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhccc-------CcchHHH
Q 009129 391 LLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQA-------PDAMRSL 463 (543)
Q Consensus 391 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~ 463 (543)
.++.+++.+...+.. +.+..+.++..++.++|.+...+..++.+.|.. ..+.-|.
T Consensus 309 ~~~~~i~~~~~~f~~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi 370 (467)
T COG2211 309 LLLLAVGYLLLYFTP------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI 370 (467)
T ss_pred HHHHHHHHHHHHhhc------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence 999888888777763 235556666678889999999999999998874 3556688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009129 464 CSALSLTTVAVGNYLSTLLVTIVTKVTT 491 (543)
Q Consensus 464 ~~g~~~~~~~ig~~l~~~i~~~~~~~~~ 491 (543)
..|...++.=+|..++..+.+++....|
T Consensus 371 ~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 371 VYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999999987655
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=147.08 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=127.1
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
+...++....+|++..+++.|+++.+|.+..+.++......++..++.++.|+++||+ |||+.+..+.+++.++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~ 334 (490)
T PRK10642 256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPAF 334 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH
Confidence 3444556788999999999999989999988888888888889999999999999999 999999888775554433322
Q ss_pred -HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 90 -LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
...+ .+...+++++++.|++.+...+...+++.+.+|++. |++++++.+....+++
T Consensus 335 ~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 335 ILINS-----------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLVA 391 (490)
T ss_pred HHHhC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHHH
Confidence 2211 125667788888888877777778888999999998 9999998666667777
Q ss_pred HHHhHHHHHhhccc-ccchhhhHHHHHHHHHHHH
Q 009129 169 LVASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 169 ~l~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~ 201 (543)
.++|.+.+++.+.. +|+.++++..+..++.++.
T Consensus 392 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 392 GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 88999999887654 4666655544444444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=142.82 Aligned_cols=185 Identities=17% Similarity=0.065 Sum_probs=144.9
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhh-hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccch-hHHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSI 79 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-k~~l~~~~~ 79 (543)
+||+.++..+.+|+..+-++.+.+..-.|+++ |.+.+.+-.|+++++..++..+..|..|+...|. |+ |+-++.|.+
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~i 110 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFL 110 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHH
Confidence 79999999999999999999999999999975 4667778889999999999999999999999998 75 788888999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
++++|.++.......+ ++..+.++++|++.|+|.|. ....-+|+++....++ |.++++.
T Consensus 111 i~~~g~llY~~l~~~~--------------~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d------R~rA~a~ 169 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVP--------------NGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED------RPRAFAA 169 (488)
T ss_pred HHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc------hHHHHHH
Confidence 9999999884332211 12588999999999999765 5778899999888888 8889988
Q ss_pred hhhhHhHHHHHHhHHHHHhh----cc---------cccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 160 FYLSINIGALVASSVLVWIQ----MN---------VGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~----~~---------~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
...+..+|..+||.+...+. +. .-+..+=|+.+++.++.++++....+|
T Consensus 170 ~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 170 TSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred hhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 88877777777777665432 11 113345566666666666665555554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=134.77 Aligned_cols=174 Identities=13% Similarity=0.027 Sum_probs=134.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+......+.....++....+++.|+++++|.+..+.+...+...+...++.+++|+++||+ |||+.+..+.....+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3334444444555455666667899999999999999999988887788888899999999999 999988877666555
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
....+....+ ...+.+.+++.+++.|...+...++..|.+|+ + |+++.++++..
T Consensus 295 ~~~~~~~~~~-------------------~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~ 348 (393)
T PRK15011 295 FYAGMLMAHS-------------------PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNT 348 (393)
T ss_pred HHHHHHHHhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHH
Confidence 4444333322 55566778877777777777777888888874 4 88899999888
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.++|..+||.++|++.+.+||+..|.+..+..+++++..+.
T Consensus 349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999889999999888777666655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=139.20 Aligned_cols=176 Identities=13% Similarity=0.040 Sum_probs=133.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+..++..++....++++..++|.|+++++|.|..++++..+...++..++.+++|+++||+ |||+.+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 355566777777788888899999999999999999999999999999999999999999999 9998877655544443
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
...+.+... .+....++.+++.|++.............|.+|++. |+++.++.+...
T Consensus 338 ~~~~~~~~~-----------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g 394 (467)
T PRK09556 338 FTLGVYQHA-----------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFA 394 (467)
T ss_pred HHHHHHHhc-----------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHH
Confidence 322222211 124455566777775443333333456779999988 999999999988
Q ss_pred hH-HHHHHhHHHHHhhc------------ccccchhhhHHHHHHHHHHHHHHh
Q 009129 165 NI-GALVASSVLVWIQM------------NVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 165 ~l-g~~l~~~i~~~~~~------------~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
++ |..++|.+.|++.+ ..||+..|.+..+..+++++....
T Consensus 395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 86 77999999999998 568999998887766666555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=130.99 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=136.8
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+.+....++..+.........+.|. ++++.+..+.+...+...++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 34444445555555555666666665 56889988999999999999999999999999999 99999999998888888
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 165 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (543)
+.....++ .+...++...++.|++.+...+..++++.|.+|+++ |++++++.+...+
T Consensus 285 ~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~ 341 (377)
T TIGR00890 285 AAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKA 341 (377)
T ss_pred HHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHH
Confidence 77766532 113344556677888888888888999999999988 9999999999999
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHH
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAV 199 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~ 199 (543)
+|..++|.+.+++.++.||++.|.+.++..++++
T Consensus 342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 342 VAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999998876655543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=128.62 Aligned_cols=172 Identities=23% Similarity=0.270 Sum_probs=153.8
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhH-HHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW-TIASFSIIYCL 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~-~l~~~~~~~~i 83 (543)
..+...+..++............+.+.++.+|.+..+.++..+...++..++.++.|+++||+ |||+ .+..+..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 345566777778888888899999999888899999999999999999999999999999999 9999 99999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.+......+ .+..++..++.|++.+...+...+++.|..|+++ |++.++..+..
T Consensus 255 ~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 309 (352)
T cd06174 255 GLLLLALAPS-------------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTF 309 (352)
T ss_pred HHHHHHHhcc-------------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHH
Confidence 8888877643 6778888999999999999999999999999888 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
.++|..++|.+.+++.+..+|+..|.+.++..+++.+..
T Consensus 310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999988999999999888777666554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-10 Score=112.44 Aligned_cols=377 Identities=11% Similarity=0.076 Sum_probs=213.4
Q ss_pred hhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc-----hh-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 32 QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-----RF-WTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 32 ~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rk-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
..+++.+....+..++...+.+. ..+..|+.+|+. + || +-+..|.++++.+..+.+.+...-. .+.++.
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~~~~~- 81 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ESGQQS- 81 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cccccc-
Confidence 35788887777777777655544 588999999998 7 55 4555666677777766665532100 000010
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccc
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~ 185 (543)
.++...........-.+.|+|.+.......++++|..|+|+ |+++.++.+...-+|..++..+.+.+.+.++-.
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 11111122233344466799999999999999999999999 999999999999999999999999887766522
Q ss_pred ----hhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccc
Q 009129 186 ----WGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLE 261 (543)
Q Consensus 186 ----~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (543)
..-....+..++.++..+-..++.+...+. .
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~---------------------------------------------~ 190 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA---------------------------------------------A 190 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC---------------------------------------------C
Confidence 111122222223333322222221111100 0
Q ss_pred cCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCc
Q 009129 262 STSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNF 341 (543)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (543)
+.++..+.+.......+ .+.++++. .+......++...-.+.++ -++-+
T Consensus 191 ~~~~~~f~~a~~~~~~~------------------~~a~~f~~--fl~l~t~a~~~QD~iLEPy-----------gg~Vf 239 (403)
T PF03209_consen 191 ERPRPPFREAWRQVWAS------------------PQARRFFV--FLFLGTLAFFMQDVILEPY-----------GGEVF 239 (403)
T ss_pred CCCCccHHHHHHHHHhC------------------CChhHHHH--HHHHHHHHHHhhHHHcCCc-----------hhHHc
Confidence 00001111111110000 01122211 1222222222221111111 01112
Q ss_pred ccChhh---hhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCcc
Q 009129 342 KIPSAS---LSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYY 418 (543)
Q Consensus 342 ~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (543)
+++.+. ++.+...+.++...+..+. ..|. .++.+...+|..+.++++........
T Consensus 240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~----l~~~------~~~~~~a~~G~~~~~~~f~lii~a~~------------ 297 (403)
T PF03209_consen 240 GMSVGETTRLTAFWGGGTLLGMLLAGFL----LSRR------LGKKRTAALGCLLGALAFALIILAGP------------ 297 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC------CCchHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 232222 3333334444444444333 2221 33334455677777777665554321
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccc
Q 009129 419 DIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGW 498 (543)
Q Consensus 419 ~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w 498 (543)
..+.+.+-+..+++|++.++......+...+.++++..|+.+|.|..++.++..++..+.+.+.|....
T Consensus 298 -----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~------ 366 (403)
T PF03209_consen 298 -----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA------ 366 (403)
T ss_pred -----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 134566777889999999999999999999999999999999999999999999999999999876542
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 009129 499 IPDNLNRGHLDYFYWLLTILSVLNFLVYLW 528 (543)
Q Consensus 499 ~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~ 528 (543)
...+.....|...|.+=++..++++++...
T Consensus 367 ~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 367 LFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112345556676666666666555433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=132.04 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=136.2
Q ss_pred HHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhc
Q 009129 14 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS 93 (543)
Q Consensus 14 ~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~ 93 (543)
++..+++..+.++++.|+++ .|. .+.++..+.+.++..++.++.|+++||+ ||||.+..+..+..++.+.....++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666777788888764 455 3456667778888889999999999998 9999999998888888777766533
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhH
Q 009129 94 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS 173 (543)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~ 173 (543)
.+.+++++++.|++.+...|.......|..|+++ |+++.++++...++|..++|.
T Consensus 302 -------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 302 -------------------PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred -------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999888888888889998887 999999999999999999999
Q ss_pred HHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceecc
Q 009129 174 VLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ 212 (543)
Q Consensus 174 i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 212 (543)
+.|++.+..||+..|++.++..+++++.....+++.+++
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 357 LAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999989999999998877777666655554443333
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-11 Score=120.07 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=116.7
Q ss_pred cchHHHHHHHHHhHhH---HHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAY---YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
++|+++++..+.+... ..-.....+|.++.++ +...+-|...+|++.+....+.+-|+.|++ |-|...+++..+.
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln 119 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLN 119 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHH
Confidence 3444444444433332 1122334456666667 666777888899999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.+|..+=.++.. |.+.+ + ........+..+.+.++..+...-+-..+-+|++++ |..+...-.
T Consensus 120 ~iGa~Ir~iss~-p~v~~----~------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v 182 (480)
T KOG2563|consen 120 GIGAWIRLISSL-PFVPP----L------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGV 182 (480)
T ss_pred HHHHHHhhhccC-ccccc----c------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHH
Confidence 999988887754 32211 1 112377788889999988888888889999999999 999998888
Q ss_pred hhHhHHHHHHhHHHHHhhc
Q 009129 162 LSINIGALVASSVLVWIQM 180 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~ 180 (543)
++..+|..+|.++...+..
T Consensus 183 ~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 183 MGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hcchHHHHHHhhccceecC
Confidence 8888888888766666543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=113.44 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=116.1
Q ss_pred hHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 009129 45 NVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIA 124 (543)
Q Consensus 45 ~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 124 (543)
..+.+.++..++.++.|+++||+ |||+.+..+..+..++.+......+ .+.+.+.+++.|
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~g 62 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSSN-------------------ITVLIIARFLQG 62 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcc-------------------HHHHHHHHHHHH
Confidence 34556778889999999999999 9999999999999888887776643 677888899999
Q ss_pred hhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 125 LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 125 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|.+.....++..+....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 63 FGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 9999999999999999999999999998889999998887766655554444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=132.02 Aligned_cols=178 Identities=12% Similarity=0.013 Sum_probs=138.2
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCC--------chhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQG--------NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFS 78 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s--------~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~ 78 (543)
+...+..++..........+++.|+++ .+.+ ..+.+...++..+...++.++.|+++||+ |||+++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 344555555555555566777788754 4443 35668888899999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 79 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
++..++...+..... .....+.+++.+++.|++.+...+....+++|.+|+++ |+++++
T Consensus 289 ~~~~v~~~l~~~~~~---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g 347 (418)
T TIGR00889 289 VAWALRFGFFAYGDP---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQG 347 (418)
T ss_pred HHHHHHHHHHHHcCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHH
Confidence 998888776665421 00124567778899999999989999999999999988 999999
Q ss_pred hhh-hhHhHHHHHHhHHHHHhhcc------cccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 159 WFY-LSINIGALVASSVLVWIQMN------VGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 159 ~~~-~~~~lg~~l~~~i~~~~~~~------~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+.+ ....+|..+||.++|++.+. +||+..|.+.++..++..+++....+
T Consensus 348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 997 56789999999999999887 46999999888776665555544444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=128.32 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=132.7
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhcCCCch---hhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQLNQGNV---TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~~s~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
.+........+.+.++.|+.+..+.... ..+.+.++..++..++.++.|+++||+ |||+.+..+..+..++.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3444455556667788888765443221 245556666778888899999999999 999999999888777776665
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL 169 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 169 (543)
...+ .+.+++.+++.|++.+...|...+++.+..|+++ |++.+++++...++|..
T Consensus 307 ~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ 361 (408)
T PRK09874 307 FVQT-------------------PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNV 361 (408)
T ss_pred Hhcc-------------------HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHH
Confidence 5432 5667788899999999999999999999988887 99999999999999999
Q ss_pred HHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhc
Q 009129 170 VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSG 205 (543)
Q Consensus 170 l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~ 205 (543)
+||.++|++.+..||+..|.+.+++.+++.+.....
T Consensus 362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988777766655443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=115.03 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhhcCC---Cc----hhhhhhHHHHHHHHhhhhhhhHHHhhhccch-hHHHHHHHHHHHHHHHHHHHhhcc
Q 009129 23 MSTNLVNYLQKQLNQ---GN----VTASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSIIYCLGMTLLTLTASV 94 (543)
Q Consensus 23 ~~~~l~~~l~~~l~~---s~----~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-k~~l~~~~~~~~i~~~~~~~~~~~ 94 (543)
+..++|+|+++..+. ++ +-.+...++..+..++..|+.|.++|.. |+ ||.+-....+..+.++.+.+.++
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 345788999887654 33 3346667778888999999999999999 75 45555555556666666666642
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHH
Q 009129 95 SGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSV 174 (543)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i 174 (543)
+.++....+...+..++.........+++.|..++++ -++..+.-+....+|..+.-+.
T Consensus 112 ---------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 112 ---------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred ---------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHH
Confidence 1346666677788899999999999999999999988 5555555555566666654333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=127.81 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=132.6
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
+....++...........++.|+++++|.+..+.++..+...+...++.+++|+++||+ |||+.+..+.++..+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 204 LFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGL 282 (375)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHH
Confidence 33444444444555566788899999999999999988887777788889999999999 99999988877665555444
Q ss_pred HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 89 TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
...++ .+..++.+++.|++.+...+...++..|..|+ + +++++++++...++|.
T Consensus 283 ~~~~~-------------------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 283 AADNS-------------------LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGW 336 (375)
T ss_pred HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHH
Confidence 44322 55666778888998888888888888998875 3 5689999999999999
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
.++|.+.+++.+..||+..|++.++..+++.+...
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999989999999998877766666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=126.78 Aligned_cols=164 Identities=21% Similarity=0.119 Sum_probs=130.3
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+......++....++.+.++++.|+++++|.+..+.+.......++..++.++.|+++||+ |||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 45556667777788888899999999999999999999999999999999999999999999 99998876655554433
Q ss_pred -HHH-HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh-h
Q 009129 86 -TLL-TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-L 162 (543)
Q Consensus 86 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 162 (543)
... ..... .+...++...++.|++.+...+...+++.|.+|+++ |+++++..+ .
T Consensus 300 ~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~ 356 (394)
T TIGR00883 300 VPLLMALLDS-----------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNL 356 (394)
T ss_pred HHHHHHHhcC-----------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHh
Confidence 222 22211 125566677788899888899999999999999988 999999854 5
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAV 193 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~ 193 (543)
...+|..++|.++|++.++.| |+..++....
T Consensus 357 ~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 357 AGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 566899999999999999888 8776655544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=129.06 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+.+..++....++++..++|.|+++++|.|..+.+...+.+.++..++.+++|+++||+ |||+.+..+..+..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHH
Confidence 3444555666677888999999999999999999999999999999999999999999999 999999888777666555
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
+.....+ .....+..++.|++.+...|...++..+..|++ +++..++.....++
T Consensus 287 ~~~~~~~-------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~ 340 (394)
T PRK03699 287 LFVNTDD-------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTI 340 (394)
T ss_pred HHHHcCC-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhH
Confidence 5544322 344555667788888888888888888877643 45567788888899
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
|..++|.+.|++.+..|++..|++..+..+++.+
T Consensus 341 g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 341 GTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 9999999999999999999999887766555543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=128.10 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=131.0
Q ss_pred HHHHhHhHHHhHHHHHHHHhhhc---CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 13 ECCERLAYYGMSTNLVNYLQKQL---NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l---~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
.++....+......++.|+.+.+ +.+..+.|.+.++..++..++.+++|+++||+ |||+.+..+.++..++.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHH
Confidence 33343444445555777776543 55667789999999999999999999999999 999999999998888888877
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh-hhhhHhHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FYLSINIGA 168 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~ 168 (543)
++++ .+.+++.+++.|++.+...+....++.|.+|++. |++..+. ++...++|.
T Consensus 311 ~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 311 FATG-------------------PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA 365 (420)
T ss_pred hccc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence 7643 6677788999999988888888889999999877 8877766 566788999
Q ss_pred HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 169 LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
.++|.+.|++.+..||+..|.+.++..++..++..
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776555444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=129.24 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=118.0
Q ss_pred HhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009129 22 GMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC 101 (543)
Q Consensus 22 ~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 101 (543)
++..+++.|+++++|.+..+.++..+...++..++.+++|+++||+ |||+.+..+..+..++.+.......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999889999999999999999999999999999999998 9999998887766665544433321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc
Q 009129 102 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~ 181 (543)
...+...+..++.+.......+..++++.|.+|+++ |++.+++.+...++|..+||.++|++.+.
T Consensus 364 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 364 ---------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred ---------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 123334444444443333456777889999999888 99999999999999999999999999999
Q ss_pred cccchhhhHHHHH
Q 009129 182 VGWGWGFGIPAVA 194 (543)
Q Consensus 182 ~g~~~~f~i~~~~ 194 (543)
+||+..+.+.+..
T Consensus 429 ~g~~~~~~~~~~~ 441 (496)
T PRK03893 429 LDLGTALASLSFS 441 (496)
T ss_pred CChHHHHHHHHHH
Confidence 9999887655543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=127.68 Aligned_cols=173 Identities=15% Similarity=0.078 Sum_probs=128.1
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
....++..+.+|...++++.|+++++|.+..+...+.........++.++.|+++||+ ||||.+..+.++..++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999887666666666677788889999999999 999999888776655444333
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh-HhHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS-INIGA 168 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lg~ 168 (543)
.... .......+++..++.+++.+...+...++++|.+|.+. |+++.++.+.. ..+|+
T Consensus 335 ~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~lgg 393 (438)
T PRK09952 335 MALE---------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVVGG 393 (438)
T ss_pred HHHH---------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHHHH
Confidence 3211 00123344455666788888888889999999999988 99888886654 45899
Q ss_pred HHHhHHHHHhhccc--ccchhhhHHHHHHHHHHHHHHh
Q 009129 169 LVASSVLVWIQMNV--GWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 169 ~l~~~i~~~~~~~~--g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.++|.+.+++.+.. +|...+.+.++..+++.+..+.
T Consensus 394 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 394 GFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999997743 4777777776666666555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=124.66 Aligned_cols=173 Identities=12% Similarity=-0.033 Sum_probs=135.1
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
...+..++.....++..++++.|+++..|.|..+.++..+...++..++.++.|+++||+ |||+.+ .+..+..++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~ 286 (390)
T PRK03545 209 SLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLL 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHH
Confidence 344455555666777778888899888999999999999999999999999999999998 988654 444444444433
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHH
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
..... .+.+.+++..++.|++.+...+...+.+.+..| ++ |++++++++...++|
T Consensus 287 l~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g 341 (390)
T PRK03545 287 LLPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFNIG 341 (390)
T ss_pred HHHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHH
Confidence 32221 125666777888899988888888888888766 45 889999999999999
Q ss_pred HHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 168 ALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 168 ~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
..+||.++|++.+.+|++..|++.+++.+++++......+
T Consensus 342 ~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 342 IGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999998877777666554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=136.97 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=110.4
Q ss_pred hhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009129 44 NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI 123 (543)
Q Consensus 44 ~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (543)
....+..++..++.+++|+++||+ |||++++++.++.+++.+++++..+ ...+++.+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s-------------------~~~ll~~~~l~ 658 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS-------------------ESAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc-------------------HHHHHHHHHHH
Confidence 334456678889999999999999 9999999999999998888877643 45566777788
Q ss_pred HhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 124 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 124 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
+++.++..+...++++|++|.+. |++++++.+...++|.++||.+++++... +...+|.+.++..+++.++..
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 88878888999999999999998 99999999999999999999999988763 466778877776666555444
Q ss_pred h
Q 009129 204 S 204 (543)
Q Consensus 204 ~ 204 (543)
.
T Consensus 732 ~ 732 (742)
T TIGR01299 732 K 732 (742)
T ss_pred h
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=116.09 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=111.2
Q ss_pred HHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 009129 27 LVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDAC 106 (543)
Q Consensus 27 l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 106 (543)
+-.+...+.+++.++..+..+.++.-..+.++++|++.||..|-|..-++-+.+..+|.++.+....
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi------------- 132 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI------------- 132 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence 3455556667777788889999999999999999999999989877666666666667666654321
Q ss_pred CCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccc
Q 009129 107 HPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183 (543)
Q Consensus 107 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g 183 (543)
-.+++++.++|++.|+|.-..-.+...++..+|.+++ .+..+++......+|..+...+.+++.+..+
T Consensus 133 ---~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 133 ---SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred ---HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 1358999999999999998888999999999999999 9999999999999999998888888877654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=125.36 Aligned_cols=170 Identities=11% Similarity=-0.064 Sum_probs=145.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+.+..++..++...+.....++.+.|+++ +|.+..+.|...+...++..+..++.|++.||+ |+|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 344556677777788888899999999964 899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh-h
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-L 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 162 (543)
..+..+.+++ .+.+++..++.|++.|...+....++.+. |+++ |+++.++++ .
T Consensus 283 ~~~~~~~~~~-------------------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~ 336 (382)
T TIGR00902 283 RWAIIGAIEA-------------------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL 336 (382)
T ss_pred HHHHHHhHhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence 9888887654 78888889999999999999999999988 8777 888888876 4
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
...+|..+||.++|++.++.|+ ..|++.++..++++++.
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 6789999999999999999886 56777776666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=124.98 Aligned_cols=175 Identities=11% Similarity=-0.005 Sum_probs=137.0
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+.+.+..++....++++..+++.|+++ .|.+..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 3445556666778888999999999975 799999999999999999999999999999998 99999999888877776
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCC-CCccccccccceeehhhhhH
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~ 164 (543)
......+. +..... .++.|++.+...|.......+..++ ++ |++.+++.+...
T Consensus 285 ~~~~~~~~------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 338 (393)
T PRK09705 285 CGFIWLPL------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQGIG 338 (393)
T ss_pred HHHHHccc------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHHHH
Confidence 65543321 111221 2456888888888887777888753 44 899999999999
Q ss_pred hHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 165 NIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
+++..++|.+.|++.+..| |+..|.+.+...++..+......++
T Consensus 339 ~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 339 FIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999876 7888888776666665555555544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=124.55 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=125.9
Q ss_pred HHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhc
Q 009129 14 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS 93 (543)
Q Consensus 14 ~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~ 93 (543)
+...+.+....++++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++..+..+..++.+... .
T Consensus 210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-- 284 (381)
T PRK03633 210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h--
Confidence 33344555566778888865 689999999999999999999999999999999 999999988888777655443 1
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhH
Q 009129 94 VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASS 173 (543)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~ 173 (543)
.......+++.|++.+...|...+.+.|..|+++ ++...+.++...++|..+||.
T Consensus 285 -------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~ 339 (381)
T PRK03633 285 -------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS 339 (381)
T ss_pred -------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1123345667787777778999999999998876 777777777888999999999
Q ss_pred HHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 174 VLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 174 i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
++|++.++.+|++.|.+.+...++..+..
T Consensus 340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 340 FTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=124.31 Aligned_cols=167 Identities=10% Similarity=-0.061 Sum_probs=130.8
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
....++....++.+..+++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.+...++...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 303 (406)
T PRK11551 226 WISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALA 303 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777888888864 799999999999999999999999999999998 999999887766666655555
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL 169 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 169 (543)
..++ ...+.+..++.|++.++..+...++..|.+|+++ |++..++.+....+|..
T Consensus 304 ~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ 358 (406)
T PRK11551 304 AAPS-------------------FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSM 358 (406)
T ss_pred hcCc-------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHH
Confidence 4432 4555566677888888888899999999999998 99999999999999999
Q ss_pred HHhHHHHHhhccc-ccchhhhHHHHHHHHHHHHHH
Q 009129 170 VASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 170 l~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~~~ 203 (543)
+||.+.|++.+.. +|...+.+.....+++.++.+
T Consensus 359 ~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 359 AGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 355555555544444444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=126.76 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=133.9
Q ss_pred HHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009129 20 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 99 (543)
Q Consensus 20 ~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 99 (543)
..++..+++.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.+...+.++
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~------ 311 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMPM------ 311 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccch------
Confidence 456677888999888999999999999999999999999999999997 8888888888888777776665432
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 100 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
.....++.++.|++.+...+...+++.|..|++. |++++++++...++|..+||.+.|++.
T Consensus 312 -------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~ 372 (417)
T PRK10489 312 -------------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG 372 (417)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 5566677788899888877888899999999888 999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 180 MNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 180 ~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+..|++..+.+.++..++..++.....+
T Consensus 373 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 373 AMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988888777655544444433333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=123.27 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=112.7
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH-HHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT-LLT 89 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~-~~~ 89 (543)
...++....++++..+.+.|+++.+|.+..+.++......++..++.+++|+++||+ |||+.++.+..+..+... ...
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 344455667888899999999988999999999988888899999999999999999 999998877655433222 111
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh-HHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN-IGA 168 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~ 168 (543)
..... .+.....+..++.+++.+...+...+++.|.+|++. |++++++.+...+ ++.
T Consensus 324 ~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g 381 (434)
T PRK15075 324 WLVAA----------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFG 381 (434)
T ss_pred HHHcC----------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHh
Confidence 11110 113333344455566777777777789999999998 9999998765444 457
Q ss_pred HHHhHHHHHhhcccccc
Q 009129 169 LVASSVLVWIQMNVGWG 185 (543)
Q Consensus 169 ~l~~~i~~~~~~~~g~~ 185 (543)
.++|.+.+++.+..|++
T Consensus 382 ~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 382 GFTPAISTWLIHVTGDK 398 (434)
T ss_pred hhHHHHHHHHHHhcCCc
Confidence 78999999999988864
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=121.74 Aligned_cols=175 Identities=13% Similarity=0.021 Sum_probs=128.8
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHH-HHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT-IASFSIIYCL 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~-l~~~~~~~~i 83 (543)
..+..++..++.......+..+++.|+++++|.+..+.++..+...++..++.+++|+++||+ |||+. +........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 345566777778888888999999999999999999999999999999999999999999999 98861 1111111111
Q ss_pred H---HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 84 G---MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 84 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
+ ......... .............+.+.+.+ ..+...++++|.+|+++ |++++++.
T Consensus 295 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~ 352 (399)
T TIGR00893 295 AGLVLSLLMFATN---------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLI 352 (399)
T ss_pred HHHHHHHHHHHhc---------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHH
Confidence 1 111111110 00113333333334444444 78999999999999998 99999999
Q ss_pred hhhHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHH
Q 009129 161 YLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~ 202 (543)
+...++|..++|.+.+++.+..| |+..|.+.++..+++.+..
T Consensus 353 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 353 NSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 9999988877666655544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-11 Score=123.51 Aligned_cols=161 Identities=13% Similarity=0.167 Sum_probs=132.0
Q ss_pred HHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 009129 15 CERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASV 94 (543)
Q Consensus 15 ~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~ 94 (543)
+....+..+..+.+.|+++ .+.+ +.+...+.+.++..++.++.|++.||+ ||||.+..+..+..++.+......+
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~- 301 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAPT- 301 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHccc-
Confidence 3445566667777888764 4554 356666777788889999999999998 9999999999888888777666532
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHH
Q 009129 95 SGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSV 174 (543)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i 174 (543)
.+..+++.++.|++.+...|...+.+.|.+|+++ |++++++++...++|..++|.+
T Consensus 302 ------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~ 357 (392)
T PRK12382 302 ------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPL 357 (392)
T ss_pred ------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778889999999888888889999999888 9999999999999999999999
Q ss_pred HHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 175 LVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 175 ~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.+++.++.||+..|.+.++..+++++....
T Consensus 358 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 358 AGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988777766665544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=127.24 Aligned_cols=170 Identities=11% Similarity=0.008 Sum_probs=134.3
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc-cchhHHHHHHH--HHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFS--IIYC 82 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Grk~~l~~~~--~~~~ 82 (543)
.+..+...++..+++++...+++.|++ ++|.+..+++...++..++..++.+++|+++||. .++|+...++. .+..
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344455566677778888889999986 4799999999999999999999999999999983 14454444333 3333
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+++.... +.+.+++.+++.|++.+...+...+++.|.+|+++ +++.+++++.
T Consensus 322 l~~ll~~~~~-------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 376 (455)
T TIGR00892 322 LTHLLCALAG-------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTI 376 (455)
T ss_pred HHHHHHHHhc-------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHH
Confidence 3444444442 26677788999999999999999999999999888 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhccc-ccchhhhHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~ 201 (543)
..++|..+||.++|++.+.. +|+..|++.++..+++.+.
T Consensus 377 ~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 377 VECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999998877 5999999988766655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-10 Score=115.88 Aligned_cols=361 Identities=15% Similarity=0.082 Sum_probs=209.0
Q ss_pred HHHHHHHhHhHHHhH---HHHHHHHhhhcCCCch-hhhhhHHHH----HHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMS---TNLVNYLQKQLNQGNV-TASNNVTNW----SGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~l~~~l~~~l~~s~~-~~~~~~~~~----~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
....++..+++.... .....+.....+.+.. +.+...... .+...+..++.|.++||+ |||..+.+....+
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHH
Confidence 344444444444444 4555555544443332 233333333 567888999999999999 9999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHH--hhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIA--LGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
.+..++..+.. +.+++ +.+ -+.+.+.....++++|...+++ |...+++
T Consensus 103 ~l~~~~~~~~~---------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gl 152 (463)
T KOG2816|consen 103 ILPALCLLFQG---------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGL 152 (463)
T ss_pred HHhHHHHHHHH---------------------HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHH
Confidence 98888887752 22222 333 2334556788899999999998 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCC
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 239 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (543)
.+.....+..++|.+++++.+..|.-..|.++.+..+++.+......|+...++.+.. +
T Consensus 153 l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~---------------------~ 211 (463)
T KOG2816|consen 153 LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD---------------------A 211 (463)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc---------------------c
Confidence 9999999999999999999999999999999998888777766655554332211110 0
Q ss_pred cchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhc
Q 009129 240 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY 319 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (543)
+.+ +....+...... .+++....+ ...+++.+...+..+.....-+.-.
T Consensus 212 ~~~----------------~~~~~~~~~~~~--------------~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~ 260 (463)
T KOG2816|consen 212 TLR----------------ELTPGSLDSSHV--------------ADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGA 260 (463)
T ss_pred ccc----------------ccCCCcccchhh--------------hhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCc
Confidence 000 000000000000 000000000 0011111111111111111111111
Q ss_pred cCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 009129 320 SQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMV 399 (543)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 399 (543)
.-...++.. ..++ .+....+.+.. ..-....+...+..|+..+.. +..+.+..|+..-.+...
T Consensus 261 ~~~~~~yl~------~~f~----w~~~~~s~~~~-~~~~~~~i~~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~~ 323 (463)
T KOG2816|consen 261 SDVLLLYLK------AKFG----WNKKEFSDLLS-LVSILGIISQLLLLPLLSSIL------GEKRLISLGLLSEFLQLL 323 (463)
T ss_pred eeEEEEEEe------eecC----cCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------hhhhHhhHHHHHHHHHHH
Confidence 101112222 1211 11211111110 111111122222333344432 223467889999999999
Q ss_pred HHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 009129 400 AAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLS 479 (543)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~ 479 (543)
++++.+ ..|... ..........+..|...+++..+..++.+|+++++......+.+.++
T Consensus 324 ~~af~~--------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~ 382 (463)
T KOG2816|consen 324 LFAFAT--------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVS 382 (463)
T ss_pred HHHHhc--------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhh
Confidence 998873 333333 33444455567789999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhc
Q 009129 480 TLLVTIVTKVTT 491 (543)
Q Consensus 480 ~~i~~~~~~~~~ 491 (543)
+.+.+.+...+.
T Consensus 383 ~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 383 PALYGNIFALTL 394 (463)
T ss_pred HHHHHHHHHHHH
Confidence 999988876543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=124.68 Aligned_cols=174 Identities=15% Similarity=0.115 Sum_probs=122.0
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccch--hHHH-HHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR--FWTI-ASFSIIYC 82 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr--k~~l-~~~~~~~~ 82 (543)
.+...+..++....++++..++|.|+++..|++..+++.....+.++..++.+++|+++||+ ++ |+.. .....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHHHH
Confidence 34455666677778889999999999998999999999999889999999999999999997 53 3322 22223333
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+...+... .+.....+..++.|.+.....+....+..|.+|++. |++++++.+.
T Consensus 334 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~ 390 (452)
T PRK11273 334 IATIVYWLNPA-----------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL 390 (452)
T ss_pred HHHHHHHHhcc-----------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHH
Confidence 33332222211 113333344444554433222333456779999988 9999999998
Q ss_pred hHhHHHHH-HhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 163 SINIGALV-ASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 163 ~~~lg~~l-~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
..++|..+ +|.+.|++.+..||+..|++.++..+++++...
T Consensus 391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88888654 799999999999999999988876666555444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=118.42 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=147.6
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhcc-chhHHHHHH-HHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYM-GRFWTIASF-SIIY 81 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Grk~~l~~~-~~~~ 81 (543)
+.+|.+++.+++..+.=|++..+.|.|++|..|+|..++++..+.+-.+...++++.||++||+. |||...-+. ++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999998 766555433 3333
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++.+..-.+++ .+..+..+..++.|+-.-+-+-.+-....|..|++. -|++.|...
T Consensus 332 ~~~~~~~w~~~~-----------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~G 388 (448)
T COG2271 332 TASLVLYWLAPN-----------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVG 388 (448)
T ss_pred HHHHHHHHcCCC-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhh
Confidence 344444444432 246777777788888877777777788899999998 999999999
Q ss_pred hhHhH-HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 162 LSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 162 ~~~~l-g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
....+ |..++....+++.+.+||...|.+-.+..+++.+++....+
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 98887 99999999999999899999998877766666665554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-11 Score=122.21 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=123.6
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
...++......++..+++.|+.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+..+..+.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 323 (405)
T TIGR00891 245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFA 323 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHH
Confidence 333344555667778889999999999999999999999999999999999999998 9999998887765433322221
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALV 170 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l 170 (543)
.. .+...+.++.++.+++.+...+..++++.|.+|+++ |++++++.+...++|..+
T Consensus 324 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~ 379 (405)
T TIGR00891 324 IG------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGAL 379 (405)
T ss_pred hC------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHH
Confidence 11 124555566677777777778888999999999988 999999999999999999
Q ss_pred HhHHHHHhhcccc-cchhhhH
Q 009129 171 ASSVLVWIQMNVG-WGWGFGI 190 (543)
Q Consensus 171 ~~~i~~~~~~~~g-~~~~f~i 190 (543)
+|.+.|++.++.| |+..+..
T Consensus 380 g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 380 APIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHhccccchhHHh
Confidence 9999999999888 7765554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=123.48 Aligned_cols=175 Identities=16% Similarity=0.098 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc--hhHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIYCLG 84 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~l~~~~~~~~i~ 84 (543)
+.+.+..++....++++.++++.|+++++|.|..+.+...+.+.++..++.+++|+++||+.+ ||+......+...++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 444455556667777888899999988899999999999999999999999999999999722 233222221112222
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+..... .+.....+..+..|++............+|.+|+++ |+++.++.+...
T Consensus 326 ~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 382 (434)
T PRK11663 326 VGSLWLMPF-----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFA 382 (434)
T ss_pred HHHHHHccc-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHH
Confidence 222111111 112233333333444322222233456788888887 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
++|..++|.+.+++.+..||+..|.+.++..+++.+....
T Consensus 383 ~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 383 YLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888776665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-10 Score=111.10 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc----------
Q 009129 112 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN---------- 181 (543)
Q Consensus 112 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~---------- 181 (543)
+.+.+.++.++.|.|.+..+++.++++++..++|+ +.+.+++.+....+|..++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 47889999999999999999999999999999888 88999999999999999999999987632
Q ss_pred ------cccchhhhHHHHHHHHHHH
Q 009129 182 ------VGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 182 ------~g~~~~f~i~~~~~~i~~~ 200 (543)
..|+++|++.+...++..+
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689998866555444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=121.68 Aligned_cols=185 Identities=16% Similarity=0.089 Sum_probs=154.8
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchh--HHHHHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF--WTIASFSI 79 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk--~~l~~~~~ 79 (543)
+.|+.+..++..++.+-+...+......|.++++|++..+...+..+..+.+.+++++.|++.||+ |.| ++++.+..
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 456677788888888899999999999999999999999999999999999999999999999999 999 89888888
Q ss_pred HHHHHHHHHHH--hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccccee
Q 009129 80 IYCLGMTLLTL--TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 157 (543)
Q Consensus 80 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 157 (543)
+..+..+...+ .++.-. ..+.+.+++.-++.|+..|..++..-++.+++.|+++ .+..|
T Consensus 358 ~~~~i~~~g~~G~~~~~~g-------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF 418 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFG-------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF 418 (477)
T ss_pred HHHHHHHHHHHHhhhcccC-------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence 77554333333 111000 1236778888889999999999999999999999998 89999
Q ss_pred ehhhhhHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcC
Q 009129 158 NWFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 158 ~~~~~~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
|++.........+||++.+.+.+..| -|+++....++.+++++++....
T Consensus 419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988776 88888888777777777765543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=123.08 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=132.3
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHH-HHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVT-NWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~-~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
+.+++..++.....+......+.|+.+++|+|..+.+.... ...++..++.+++|+++||+ ||||.+.++.++..++.
T Consensus 225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 44444455566666677778888888889999999999985 55678999999999999999 99998887766655544
Q ss_pred HHHHH-hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 86 TLLTL-TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
+.... +.. ..+...+.+..++..++.|...+...++..+..+++. +++.+++.+...
T Consensus 304 l~~~~l~~~----------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~ 361 (491)
T PRK11010 304 AGYWLLSIT----------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALS 361 (491)
T ss_pred HHHHHHHhc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHH
Confidence 33221 111 0123344445566555556556777888999999888 888899999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcC
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
++|..+++.+.|++.+..||+..|.+..+..+++++.....+
T Consensus 362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998889999999999999999988887777766655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=119.84 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=129.7
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH-HHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-SFSIIYCLG 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~-~~~~~~~i~ 84 (543)
.+...+..++....+++..+++|.|++ ++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence 345556677778889999999998885 5899999999999999999999999999999998 9988764 333334443
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+...... ...+.+..++..++.|++.+...+. .+...+..| ++ |++++++.+...
T Consensus 302 ~~~l~~~~~~--------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g~~~~~~ 359 (402)
T TIGR00897 302 TLALYYIPQH--------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMSVLNLSA 359 (402)
T ss_pred HHHHHHHHHc--------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHHHHHHHH
Confidence 3333322110 0012455566777788887776553 455666544 45 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
++|..++|.+.+++.+..||...|++.++..+++.+...
T Consensus 360 ~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 360 GLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877666555433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=114.90 Aligned_cols=178 Identities=14% Similarity=0.095 Sum_probs=148.4
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
.++.+...+.+++...+.|...+++.+++++..|+|..+++++...+.++..++..++|+++|| +.|+++.....+..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 4566778888899889999999999999999999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+....+.+..+ +.+...+..++.|++.+........-.++.. +++ ++.+.+++..
T Consensus 288 ~~~l~l~~~~~------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~a 342 (394)
T COG2814 288 LALLALTFTGA------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNVA 342 (394)
T ss_pred HHHHHHHHhcc------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHHH
Confidence 87777776643 2555666666678777766656656666633 344 7889999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
..|+|..+|..++|.+.+++|+....+.+++..++++++.....+
T Consensus 343 a~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 343 AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888777655444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-09 Score=110.68 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=119.3
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc----cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY----MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC 101 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 101 (543)
....|+++++|.++++.....+...+--. .-|+.|.++|.+ ..||+-++++.++..++.+.++..+..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 34467889999999988877666555444 457899999987 236666677777776666666554321
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc
Q 009129 102 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~ 181 (543)
..+.....+..++..+|.+.....+.++..|...++... |+...++.+....+|.+++..++|++.+.
T Consensus 83 --------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~ 150 (433)
T PF03092_consen 83 --------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDS 150 (433)
T ss_pred --------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 112444556667788999999999999999998666422 78888899999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 182 VGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 182 ~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
.+++..|.+.++...+.++......+
T Consensus 151 ~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 151 FGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred CCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999988766655444333333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=120.82 Aligned_cols=169 Identities=10% Similarity=0.025 Sum_probs=121.1
Q ss_pred hHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 009129 23 MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD 102 (543)
Q Consensus 23 ~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 102 (543)
+..+.+ ++.+++|.+..+.++......++..++.+++|+++||+ |||+.+..+.++..++.+++.+......-
T Consensus 303 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 375 (481)
T TIGR00879 303 IMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT----- 375 (481)
T ss_pred hHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC-----
Confidence 333444 44467899988888999899999999999999999999 99999999988888877777632110000
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc
Q 009129 103 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV 182 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~ 182 (543)
+ .|+. .+...+....+..+.......+....+..|.+|+++ |+++.+..+...++|.+++|.+.+++.++.
T Consensus 376 -~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~ 446 (481)
T TIGR00879 376 -G-SSKS-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLESI 446 (481)
T ss_pred -C-cccc-hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0000 012222222333322223345777788899999988 999999999999999999999999998888
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 183 GWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 183 g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+|++.|++.++..+++.+......+
T Consensus 447 ~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 447 GVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred CccceehhHHHHHHHHHHHHheecc
Confidence 9999999888776666665544443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-10 Score=117.82 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=111.4
Q ss_pred HHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH-hh
Q 009129 14 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL-TA 92 (543)
Q Consensus 14 ~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~-~~ 92 (543)
++....+|++.++++.|+++++|.+..+.+...+...+...++.++.|+++||+ |||+.+..+.++..+..+.... ..
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999998999888888888888899999999998 9999888776654443322211 11
Q ss_pred cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH-HHHHH
Q 009129 93 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI-GALVA 171 (543)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~l~ 171 (543)
.. .+....+....+...+.+...+...++.+|.+|++. |++++++.+...++ +....
T Consensus 332 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~~ 389 (432)
T PRK10406 332 NV----------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGSA 389 (432)
T ss_pred cC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhHH
Confidence 10 112222222222223333334567788999999999 99999999876554 34457
Q ss_pred hHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHh
Q 009129 172 SSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 172 ~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~ 204 (543)
|.+.+++.. .| |...+...++..+++.+..+.
T Consensus 390 p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 390 EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888886644 45 555555555555555444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=119.81 Aligned_cols=172 Identities=9% Similarity=-0.006 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhH-------HHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFW-------TIASFSI 79 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~-------~l~~~~~ 79 (543)
+.+.+..++.....+++.++++.|+.+++|++..+++...+.+.++..++.+++|+++||+ |||+ .+.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence 3444444444455566777889999989999999999999999999999999999999998 8762 2222222
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+..++.++.+... +.....+..++.+++.+...+...+++.+..| +. |+...++
T Consensus 334 l~~i~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~ 387 (476)
T PLN00028 334 LGGVFCIWLGRAN-------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGL 387 (476)
T ss_pred HHHHHHHHhcccc-------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhh
Confidence 2222222222221 13344444455566555555555666666554 44 8999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcC
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
.+...++|+.++|.+.+ .....+|+.+|.+.++..+++.++.++.+
T Consensus 388 ~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 388 TGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88877888887776644 22334699999998877777766655543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-12 Score=136.10 Aligned_cols=194 Identities=13% Similarity=0.162 Sum_probs=3.0
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
++..+.. ....+.......-+++.++++.+++|++.+.+-++..+..++..++++|. .|-|.+-.|.+++++|+++.+
T Consensus 9 ~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 9 CLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh
Confidence 3444444 77888888888899999999999999999999999999999999999997 888899999999999999987
Q ss_pred HhhcccCCCC-------CC----CCCCC-------------------CC-CCchHHHHHHHHHHHHhhccCCCcchhhhh
Q 009129 90 LTASVSGLKP-------SC----DKDAC-------------------HP-TGAQTAVTFVALYLIALGTGGIKPCVSSFG 138 (543)
Q Consensus 90 ~~~~~~~~~~-------~~----~~~~~-------------------~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 138 (543)
+-+....... .| +++.| .+ .......++++.++.|+|....++...+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 6533211110 00 11111 11 222367888999999999999999999999
Q ss_pred hcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc---------------------ccc-cchhhhHHHHHHH
Q 009129 139 ADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM---------------------NVG-WGWGFGIPAVAMA 196 (543)
Q Consensus 139 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~---------------------~~g-~~~~f~i~~~~~~ 196 (543)
=|..++++ -....++.+....+|+.+|.++++.... +.| |+..|++.++..+
T Consensus 167 DDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 167 DDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999998 8889999999999999999988876531 233 8889988888777
Q ss_pred HHHHHHHhcCcceec
Q 009129 197 IAVVFFFSGSRLYRI 211 (543)
Q Consensus 197 i~~~~~~~~~~~~~~ 211 (543)
+..+.+..+.|+++.
T Consensus 241 l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPG 255 (539)
T ss_dssp ---------------
T ss_pred HHHHHHHcCCccCCC
Confidence 766666666665543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=118.82 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=126.7
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|.....+...++..+++.......+.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 3344555666677677666666788888888999999999999888888888889999999999 999999999888887
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+..++..... ......+.+..++.|++.+...+...++..+..|+++ ++.++++.+..
T Consensus 340 ~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 397 (471)
T PRK10504 340 VSLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMI 397 (471)
T ss_pred HHHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHH
Confidence 7666655421 0123344455677889988888899999999999888 99999999999
Q ss_pred HhHHHHHHhHHHHHhhccccc
Q 009129 164 INIGALVASSVLVWIQMNVGW 184 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~ 184 (543)
.++|..+|+.+++.+.+..|+
T Consensus 398 ~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 398 MQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999988766554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-10 Score=116.77 Aligned_cols=178 Identities=13% Similarity=0.072 Sum_probs=121.5
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH-
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG- 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~- 84 (543)
.+.+.+..++.....+++.++++.|+++..|.|..+.++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHH
Confidence 33444556666677789999999999988999999999999999999999999999999998 7554333333222221
Q ss_pred --HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 85 --MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
......... .+........+..|.+.............|.+|+++ |+++.++.+.
T Consensus 332 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 388 (438)
T TIGR00712 332 IAVIVYWMNPA-----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL 388 (438)
T ss_pred HHHHHHHhcCC-----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhch
Confidence 111111110 112323333444454432222222346778999888 9999999998
Q ss_pred hHhHHH-HHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 163 SINIGA-LVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 163 ~~~lg~-~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
..++|. .++|.+.|++.+..||...|.+..+..+++.+......+
T Consensus 389 ~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 389 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred HHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 888774 689999999999889999988877666665555444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=115.55 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=151.7
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLL 88 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~ 88 (543)
++....+....+.+.......-+++.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-+|.+++++++++.
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHH
Confidence 33444445555558888888999999999999999999999999999999999999998 88899999999999999998
Q ss_pred HHhhcccCCC---------C-CCC-------C-----CCCCC----------CCc-hHHHHHHHHHHHHhhccCCCcchh
Q 009129 89 TLTASVSGLK---------P-SCD-------K-----DACHP----------TGA-QTAVTFVALYLIALGTGGIKPCVS 135 (543)
Q Consensus 89 ~~~~~~~~~~---------~-~~~-------~-----~~~~~----------~~~-~~~~~~~~~~l~g~g~g~~~~~~~ 135 (543)
++-+....-. . .++ . ..|++ ++. -+..++++.++.|+|....++...
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 7652110000 0 000 0 11122 111 345788889999999999999999
Q ss_pred hhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc------------------ccc-cchhhhHHHHHHH
Q 009129 136 SFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM------------------NVG-WGWGFGIPAVAMA 196 (543)
Q Consensus 136 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~------------------~~g-~~~~f~i~~~~~~ 196 (543)
+|+=|...+++ -...+++.+....+|+++|.+++++..+ ++| |+..|++.+.+.+
T Consensus 260 sYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 260 SYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred ccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 99999998887 8889999999999999999999987632 223 8899999998888
Q ss_pred HHHHHHHhcCccee
Q 009129 197 IAVVFFFSGSRLYR 210 (543)
Q Consensus 197 i~~~~~~~~~~~~~ 210 (543)
+..+.++.+.++.+
T Consensus 334 ~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 334 FSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHhCcccCc
Confidence 88777777766544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=113.75 Aligned_cols=166 Identities=9% Similarity=-0.112 Sum_probs=131.1
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+..++..++....+.+..+.++.|++ +.|.+..+.|...+...++..+..++.|++.||+ |+|+.+..+.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3444556666666777778888899995 5899999999999988888999999999999999 9999999999888887
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh-hh
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-LS 163 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~ 163 (543)
.+.+...++ .+.+++..++.|++.+...+....+..+. ++++ ++++.+... ..
T Consensus 284 ~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~ 337 (382)
T PRK11128 284 WGLMGSTTA-------------------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALA 337 (382)
T ss_pred HHHHHhhhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHH
Confidence 777665543 67778888999999998888888888876 4444 677777765 45
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAV 199 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~ 199 (543)
..+|..+||.++|++.+..|+ ..|+..++..++++
T Consensus 338 ~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 338 MGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 578889999999999998887 45665555444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=113.30 Aligned_cols=169 Identities=9% Similarity=0.054 Sum_probs=128.5
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhc---CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQL---NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
+.+++..++....+.......+.|+++.+ +.+....|...+...+...++.+..|++.||+ |||+.+.++..++.+
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence 34444455555555556667788887765 44556678888888888888999999999999 999999999988888
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh-hhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~ 162 (543)
+......+.+ .+.+++.+++.|++.+........+..+..+++. +++..+. ++.
T Consensus 297 ~~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~ 351 (396)
T TIGR00882 297 RIIGSSFATT-------------------ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQF 351 (396)
T ss_pred HHHHHHhcCC-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHH
Confidence 7776665533 6666778888998876655555566677677665 7777766 567
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~ 201 (543)
..++|..++|.++|++.+..||+.+|.+.++..++..+.
T Consensus 352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 889999999999999999899999999988766555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-10 Score=114.56 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=128.3
Q ss_pred chHHHHHHHHHhHhHHHhH-HHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMS-TNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
.+..+...++....+.+.. ...+.|.++.+|.+..+.+.......++..++.++.|++.||+ |||+.+..+..+..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 3444555566666666666 6777888777999999999999999999999999999999998 9999999887777777
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
........+ +.+.+++..++.|++.+...+...+++.|..|+++ |++..+..+...
T Consensus 291 ~~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 346 (365)
T TIGR00900 291 ILVVGLTPP------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLS 346 (365)
T ss_pred HHHHHhhch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 766665421 25667778889999999999999999999999888 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccc
Q 009129 165 NIGALVASSVLVWIQMNVG 183 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g 183 (543)
++|..++|.++|++.+.+|
T Consensus 347 ~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 347 HAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999987653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.9e-10 Score=111.08 Aligned_cols=186 Identities=16% Similarity=0.060 Sum_probs=149.0
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
-++.|.+++..+..-=++-++...++.|++++++.+..++|.....+.+...+..+++|+++||+ |.+|+++.....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46788888888888778888999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++........+.... ..+...+++.-+.+++..|.-...+..++...+|++ -+...++...
T Consensus 296 ~~~~~l~~~~~~~~~------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga 356 (417)
T COG2223 296 LAAALLSLFLTGFGH------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA 356 (417)
T ss_pred HHHHHHHcccccccc------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence 988888776431110 122444444445556666666667788888888764 6888889999
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
..++|++.-|..-+...+..| +..+|++.....+++.++.+..+.+
T Consensus 357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888988888888777 8899998888777777765554433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=112.67 Aligned_cols=175 Identities=15% Similarity=-0.017 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHH-HHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
..+..+...++...+.....++.+.|+++ .|++..+.|+....... ...++.+++|++.||+ |+|+.+..+..+..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34455566667777777778888888865 79999999999888764 5667789999999999 999999988776644
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCC-CCccccccccceeehhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 162 (543)
..+....... ... .......+....+.+++.|...+...+...+..++ +. +++.++..+.
T Consensus 287 ~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 347 (390)
T TIGR02718 287 LALLWFAQAA-FWL------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHHH-ccc------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHH
Confidence 3332221111 000 01133334444556667777777888887777765 55 8999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
..++|..+||.++|++.+..|++..|.+.++..+++++
T Consensus 348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999989999999888766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-09 Score=110.10 Aligned_cols=166 Identities=11% Similarity=-0.121 Sum_probs=126.0
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+..++..++.....+......+.|+++++|.+..+.++......++..++.++.|+++||+ |||+.+..+.++..++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~ 296 (406)
T PRK15402 218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3344444455555666667788888888999999999888878888889999999999999 999999999888888877
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
........ ...+...++++.++.|+|.+...+.......... +++ |++..+..+....+
T Consensus 297 ~~~~~~~~--------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~------~g~~~~~~~~~~~~ 355 (406)
T PRK15402 297 LAALATVI--------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVS------KGTVSAAMGMLSML 355 (406)
T ss_pred HHHHHHHc--------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-ccc------ccHHHHHHHHHHHH
Confidence 77654310 0122555677888899999888777766654443 355 99999999999999
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHH
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVA 194 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~ 194 (543)
|..+|+.+.+++.+..++....+...+.
T Consensus 356 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK15402 356 IFTVGIELSKHAYLGGGNGLFNLFNLAN 383 (406)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 9999999999998877766544444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=112.10 Aligned_cols=161 Identities=13% Similarity=0.143 Sum_probs=119.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHH--HH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII--YC 82 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~--~~ 82 (543)
..+.+.+..++......++..+++.|+++.+|.+..+.+...+...++..++.++.|+++||..+||+........ ..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 3445566677777778888899999999999999999999999999999999999999999862344433222111 11
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++......... .+.....+..++.|+......+....+..|.+|+++ |+++.++.+.
T Consensus 297 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 353 (379)
T TIGR00881 297 VSLLVYWLNPA-----------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGF 353 (379)
T ss_pred HHHHHHhcCcc-----------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHH
Confidence 12222111111 124445555666776666666667788999999988 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccccchhh
Q 009129 163 SINIGALVASSVLVWIQMNVGWGWGF 188 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~~~~f 188 (543)
..++|..++|.+.|++.+..||+..|
T Consensus 354 ~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 354 FAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999998765
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-09 Score=111.59 Aligned_cols=144 Identities=17% Similarity=0.085 Sum_probs=108.0
Q ss_pred hHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009129 19 AYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLK 98 (543)
Q Consensus 19 ~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~ 98 (543)
..+.+...++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.++..+..+......+
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 344567788888875 689999999999999999999999999999999 9999999888777665554443321
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHh
Q 009129 99 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~ 178 (543)
.....+.+..+..+.+..+..+..+.++.|.+|++. |++++++.+...++|..++|.+.+++
T Consensus 319 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 319 ------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred ------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 112222122222223333444567788899999988 99999999999999999999999999
Q ss_pred hcccccchh
Q 009129 179 QMNVGWGWG 187 (543)
Q Consensus 179 ~~~~g~~~~ 187 (543)
.+..|+...
T Consensus 381 ~~~~g~~~~ 389 (426)
T PRK12307 381 GITMGLGAA 389 (426)
T ss_pred HHcccHHHH
Confidence 988876544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-09 Score=111.23 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=113.2
Q ss_pred HHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009129 30 YLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPT 109 (543)
Q Consensus 30 ~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (543)
++.+++|.+..+.++......+...++.+++|+++||+ |||+.++.+.++.+++.+.+......+
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------- 360 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------- 360 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence 34457888877777777778888899999999999999 999999999999999888776542200
Q ss_pred CchHHHHHHHHHHHHhhccC-CCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH------Hhhccc
Q 009129 110 GAQTAVTFVALYLIALGTGG-IKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV------WIQMNV 182 (543)
Q Consensus 110 ~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~------~~~~~~ 182 (543)
........+.++.+.+.+. ..|...++++|.+|+++ |++++++.+...++|..+++.+.+ ++.+.+
T Consensus 361 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 361 -APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred -cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 1112233334444444443 34788899999999888 999999999988888888855544 444678
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 183 GWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 183 g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+|+..|++.++..+++.++.+...+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhccc
Confidence 8998898877665655555444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=115.59 Aligned_cols=153 Identities=10% Similarity=-0.044 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
.....++..++....+++...+++.|+|+..|.|..++|.......++..++.++.|++.||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 334455666777778888888999999999999999999999999999999999999999999 9999999998888887
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+.+..... ..+.+......++.|+|.|...+.....+.+..|+++ ++.+.++++...
T Consensus 339 ~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 396 (495)
T PRK14995 339 FYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAY 396 (495)
T ss_pred HHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHH
Confidence 776654321 0124445667788999999999989999999999888 999999999999
Q ss_pred hHHHHHHhHHHHHhhc
Q 009129 165 NIGALVASSVLVWIQM 180 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~ 180 (543)
++|..+|+.+.+.+.+
T Consensus 397 ~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 397 ELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=109.48 Aligned_cols=165 Identities=8% Similarity=0.026 Sum_probs=116.0
Q ss_pred HHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009129 11 GNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTL 90 (543)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~ 90 (543)
...++...+.+...++++.|+++..|.++.+.+...+...++..++.++.|++.||+ |+|+.+..+..+..++.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~ 284 (382)
T PRK10091 206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFF 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHH
Confidence 333444455555666778888888999999999999999999999999999999999 9999999998888887766544
Q ss_pred hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhccc-CCCCccccccccceeehhhhhHhHHHH
Q 009129 91 TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQF-DETDDGEREKKSSFFNWFYLSINIGAL 169 (543)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lg~~ 169 (543)
..+ +.+...+..++.+.|.+...+.......+.. +++. ++.+ ..+...++|..
T Consensus 285 ~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~g~~ 338 (382)
T PRK10091 285 FGG------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFNLGSA 338 (382)
T ss_pred HHh------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHHHHHH
Confidence 321 1333444445556655544444443333333 3333 4443 23566789999
Q ss_pred HHhHHHHHhhcc-cccchhhhHHHHHHHHHHHHH
Q 009129 170 VASSVLVWIQMN-VGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 170 l~~~i~~~~~~~-~g~~~~f~i~~~~~~i~~~~~ 202 (543)
+||.++|++.+. .+|+..+.+.++..++.+...
T Consensus 339 ~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 339 IGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 999999998874 689999998876655544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=115.97 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=130.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|.....++..++..+.+++....++.|+++.+|.+..+.++......++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 3444556667777788899999999999999999999999999999999999999999999999 999999999888888
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+..+.....+ ...+........++.|+|.+...+.......+..|+++ |+++.++.+..
T Consensus 334 ~~~~~~~~~~---------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 392 (485)
T TIGR00711 334 GFYWRAFTFT---------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFT 392 (485)
T ss_pred HHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHH
Confidence 8777663211 01235556666788999999888777788888888887 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcc
Q 009129 164 INIGALVASSVLVWIQMN 181 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~ 181 (543)
.++|..+|+.+.+.+.++
T Consensus 393 ~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 393 RQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=113.48 Aligned_cols=162 Identities=10% Similarity=0.020 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhh-hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHH-HHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQK-QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT-IASFSIIYCLG 84 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~-l~~~~~~~~i~ 84 (543)
+...+..++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. +....++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHH
Confidence 345566677778899999999999976 3467888899999999999999999999999998 87764 33333333333
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.+ ...... . ......+..+.++|.....+.......+.+|+++ |++++++.+...
T Consensus 324 ~~-~~~~~~-----------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~ 378 (412)
T TIGR02332 324 WL-LASATD-----------------H-NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATG 378 (412)
T ss_pred HH-HHHhcC-----------------C-HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhh
Confidence 32 222211 1 1222222233334433333444445566778777 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccc-cchhhhHHHHH
Q 009129 165 NIGALVASSVLVWIQMNVG-WGWGFGIPAVA 194 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~ 194 (543)
++|..++|.+.+.+.+..| |++.|++.++.
T Consensus 379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 379 NIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999988775 99988876653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=109.44 Aligned_cols=172 Identities=9% Similarity=-0.037 Sum_probs=129.9
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhh--hcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQK--QLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
|+.+...+..++..+.+......++.|+.. +.+.+....+.......+......++.|++.||+ ++|+.+..+..+.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 344555566676666666666667777653 3455566777888777777777788999999998 9999999998888
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++.....+..+ +.+.+.++.++.++|.+...|...+++.+..|++. |+++++...
T Consensus 285 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~ 340 (395)
T PRK10054 285 VIGLVGFIFSGN------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS 340 (395)
T ss_pred HHHHHHHHHcch------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH
Confidence 888776665421 25556677888999998888999999999999887 888887654
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~ 201 (543)
...+|..+||.++|++.++.|....|++.+....++.++
T Consensus 341 -~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 341 -LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 566899999999999999998888887765544444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=115.22 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=122.5
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+.+++..++..++++......+.|.+..++ +..+.++..+...++..++.++.|+++||+ |||+++..+.++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 301 (437)
T TIGR00792 224 LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGY 301 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 3445566666667776666666666665555 556677777888899999999999999999 99999999998888887
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc-ccccccceeehhhhhH
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-EREKKSSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 164 (543)
+...+..+ +.+.+++..++.|++.+...+...++++|..|.++.+ .+..+|.++++++...
T Consensus 302 ~~~~~~~~------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 363 (437)
T TIGR00792 302 LIFFFAGS------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR 363 (437)
T ss_pred HHHHHcch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence 77665421 2455666778889999999999999999988743211 1112788999999999
Q ss_pred hHHHHHHhHHHHHhhcccccc
Q 009129 165 NIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~ 185 (543)
.+|..+++.+.|++.+..||.
T Consensus 364 ~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 364 KLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999998777764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-09 Score=105.97 Aligned_cols=160 Identities=14% Similarity=0.049 Sum_probs=123.6
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhh--cCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQ--LNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
.++..+..|+...+--++..+++.|+.+. +|.+..+.+...+.+..+..++.++++++.||+ |+||.+.++..+.++
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 34444555555446667888899999754 799999999999999999999999999999999 999999888888777
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.++...... .. ...+.++.|++.+...|+..+...+..|++. +++.++. ..
T Consensus 221 ~~~l~~~~~~-------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~~ 272 (310)
T TIGR01272 221 LSIGAALTHG-------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-CL 272 (310)
T ss_pred HHHHHHHcCC-------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-HH
Confidence 7655544321 21 2235567899999999999999999888653 2333443 45
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHH
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVA 194 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~ 194 (543)
..+|..+.|.+.|.+.+..|.+.+|++..+.
T Consensus 273 ~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 273 AIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 6789999999999999988988888765543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-09 Score=109.88 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=125.4
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHH-hhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYL-QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l-~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
...+..++.....++...+++.|+ ++.+|.|+.+.+.....+.++..++.+++|++.||+ ||||++..+..+..++..
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~ 340 (438)
T PRK10133 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 344555666677777778888886 567899999999999999999999999999999999 999999988777776655
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
+..+... . ..+.+..+.|+|.+...|+..+...+.++++ .+.+.++... ..+
T Consensus 341 ~~~~~~~-------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~~~ 392 (438)
T PRK10133 341 ISAFAGG-------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-TII 392 (438)
T ss_pred HHHHcCC-------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-Hhc
Confidence 5544321 2 2245567789999999999999999998764 3445555543 346
Q ss_pred HHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHH
Q 009129 167 GALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~ 200 (543)
|..++|.+.|++.+..| -+..|++..+..+..+.
T Consensus 393 g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 393 GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 78888899999988887 78888877665444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=112.69 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=144.3
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
++..++.++....+...+|.+.++.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.++++++.+.++
T Consensus 224 l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 224 LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHh
Confidence 3444445555556667788999999999999999999999999999999999999998 999999999999998888888
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGAL 169 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 169 (543)
++.+ .+...+..++.|++.........+.+.+..|++. ||+.+++++.....+..
T Consensus 303 l~~~-------------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~ 357 (524)
T PF05977_consen 303 LSPS-------------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMP 357 (524)
T ss_pred cchH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHH
Confidence 8754 6777788888999999988888999999999998 99999999999999999
Q ss_pred HHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 170 VASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 170 l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
+|..+.|.+.+.+|.+..+.++++..+++.++..
T Consensus 358 lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 358 LGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888876655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=100.08 Aligned_cols=174 Identities=15% Similarity=0.085 Sum_probs=134.9
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH-HH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC-LG 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~-i~ 84 (543)
.|.+.++.++...+.+=..+.-+.++++.+|+|+..++.+.+.....+++.+|+.|.+.||+ ||+-..+.+..+.. ++
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~ 344 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLG 344 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHH
Confidence 45666777777777777778888999999999999999999999999999999999999999 99987777666544 56
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
...+.++- ..=+.+..+.|+...+.-....+.++...|+++ .|++++..+...
T Consensus 345 H~~l~Ft~---------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIq 397 (459)
T KOG4686|consen 345 HSGLFFTF---------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQ 397 (459)
T ss_pred hhhHHhhh---------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHH
Confidence 66666652 223455677888877766667888899999998 999999999999
Q ss_pred hHHHHHHhHHHHHhhcccc---cchhhhHHHHH-HHHHHHHHHhcCc
Q 009129 165 NIGALVASSVLVWIQMNVG---WGWGFGIPAVA-MAIAVVFFFSGSR 207 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g---~~~~f~i~~~~-~~i~~~~~~~~~~ 207 (543)
|+|-.+-|++.|.+.+.-| |--.|.+.... .+++..+++...+
T Consensus 398 NLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 398 NLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred hhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence 9999999999999987654 44445444433 3344444444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-09 Score=104.19 Aligned_cols=174 Identities=13% Similarity=0.075 Sum_probs=142.8
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
.+.....++..++.+=+.-++.+....|-..++|++..+....-....+.+.+++++.|+|+||+ |-|++++.++++..
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~ 329 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILS 329 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHH
Confidence 34556666667766666777778888999999999999999999999999999999999999999 99999999999988
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+..+...+... ..-+.+.-++.|...|..++.+-++.++..|+++ -++.|+++..
T Consensus 330 ~~~~~~~~~~~-------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyal 384 (438)
T COG2270 330 IAALYLIFLEG-------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYAL 384 (438)
T ss_pred HHHHHHHHccc-------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhh
Confidence 87777665532 3345555578899999999999999999999999 8999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~ 202 (543)
....+..+||...+.+.+..| -|..+..-.++.+++++.+
T Consensus 385 tgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 385 TGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 999999999999998877554 6666555555555555543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=110.69 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+.+..++....++.+..+++ ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+... .+..+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~ 329 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLL-LLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHH-HHHHHHHH
Confidence 3444555566677777777777 66678999999999999999999999999999999999 999554443 33333333
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+.... .+....++..++.|++.+...+...+++.|.+|+++ |++++++.+....+
T Consensus 330 ~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 385 (398)
T TIGR00895 330 LVGSTL------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRL 385 (398)
T ss_pred HHHHHh------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHH
Confidence 333211 125566677788999999999999999999999988 99999999999999
Q ss_pred HHHHHhHHHHHh
Q 009129 167 GALVASSVLVWI 178 (543)
Q Consensus 167 g~~l~~~i~~~~ 178 (543)
|..+||.+.|++
T Consensus 386 g~~~g~~~~G~l 397 (398)
T TIGR00895 386 GAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhHHhc
Confidence 999999999875
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=107.83 Aligned_cols=151 Identities=13% Similarity=0.030 Sum_probs=117.1
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+.+..++....++++..+++.|+++ .|.|..+.+...+...++..++.++.|+++||+-+||+.+..+.++.+++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 344455566677888888999999975 7999999999999999999999999999999983466677777777877777
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+....+ .... ...++.|++.|...|...+.+.+..+++++ +++..++.+...++
T Consensus 279 ~~~~~~~-------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~ 333 (355)
T TIGR00896 279 GLLFAPM-------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQSIGYL 333 (355)
T ss_pred HHHHhhh-------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHHHHHHH
Confidence 6665432 1111 134678999999999888887766554321 78888888888889
Q ss_pred HHHHHhHHHHHhhcccc
Q 009129 167 GALVASSVLVWIQMNVG 183 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g 183 (543)
|..++|.+.|++.++.|
T Consensus 334 ~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 334 LAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988775
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=106.69 Aligned_cols=170 Identities=10% Similarity=0.079 Sum_probs=112.7
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHH-HHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWS-GTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
+++..++............+.++.+++|.+..+.++..+... ++..++.+++|++.||+ |||+.+..+.++..+..+.
T Consensus 214 ~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~ 292 (402)
T PRK11902 214 LLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLG 292 (402)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 333334433333333344556777889999999999887654 46788899999999999 9999988777776665443
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHH----HHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL----YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
.......+ .+.+.+++.. +..|++.+...+....++.+.+|+++ + +.+...
T Consensus 293 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~ 347 (402)
T PRK11902 293 YWVLAVTP---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSAL 347 (402)
T ss_pred HHHHHhcC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHH
Confidence 32211100 1134444443 34556666666777777777776554 3 444445
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.++|..+++.++|++.+.+||+..|.+.++..++++++...
T Consensus 348 ~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 348 ASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 56778777778999999999999999988777766555433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-09 Score=111.21 Aligned_cols=178 Identities=18% Similarity=0.006 Sum_probs=124.3
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHH--------H
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT--------I 74 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~--------l 74 (543)
++..+.+++..++....++.+.+++|.|+++.+|.+..+.++..+...++..++.+++|+++||+ ++|+. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 34566778888888899999999999999999999999999999999999999999999999997 65421 1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccc
Q 009129 75 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 154 (543)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 154 (543)
..+......+......... ..+....++...+.+.+.+...+.......|..|+ . ++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g 395 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYL----------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LG 395 (465)
T ss_pred HHHHHHHHHHHHHHHHHHc----------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HH
Confidence 1111111111111111110 01133334444555555555555555566666654 4 89
Q ss_pred ceeehhhhhHhHHHHHHhHHHHHhhccc---ccchhhhHHHHHHHHHHHHHHh
Q 009129 155 SFFNWFYLSINIGALVASSVLVWIQMNV---GWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 155 ~~~~~~~~~~~lg~~l~~~i~~~~~~~~---g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.+.++.+...++|+.++|.+.+++.+.. +|+..|.+.++..+++.++...
T Consensus 396 ~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 396 FIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999999999999999887643 4888888888777776655443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=105.84 Aligned_cols=163 Identities=7% Similarity=-0.007 Sum_probs=119.8
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+..++..++.....++..++++.++.+++|++..+.+.....+.++..++.++.|++.||. +|+..+ .+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~-~~~~~~~~~~~ 296 (394)
T PRK10213 219 MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALA-GAPLVLAVSAL 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHH-HHHHHHHHHHH
Confidence 3333444555566667667775555567899999999999999999999999999999996 554444 44444343333
Q ss_pred HH-HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh
Q 009129 87 LL-TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 165 (543)
Q Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (543)
.+ .... +.+.+.+..++.|++.+...+..++++.+..|+ + +++..+..+...+
T Consensus 297 ~l~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~ 350 (394)
T PRK10213 297 VLTLWGS-------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAVIQ 350 (394)
T ss_pred HHHHHhh-------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHHHH
Confidence 33 3322 255666778889999999999999999988874 3 4556667777889
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHH
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAI 197 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i 197 (543)
+|..+||.++|++.+..|++..+...+...++
T Consensus 351 lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 351 LANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 99999999999999989998888887755433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=106.65 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009129 20 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 99 (543)
Q Consensus 20 ~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 99 (543)
+......+|.|+++..+ ++.+.++..+...++......+.+++.||..+.++.+..+..+..++...++..++
T Consensus 224 ~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~------ 296 (400)
T PRK11646 224 AVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN------ 296 (400)
T ss_pred HHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh------
Confidence 33445677888876555 67888888877776666555555666655427677777887777777776665532
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 100 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
.....+...+.++|.+...|...+++.+..|+++ |+++++..+...++|..+||.++|++.
T Consensus 297 -------------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 297 -------------LQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHH
Confidence 4555566677888888888999999999999988 999999999999999999999999998
Q ss_pred ccc---c-cchhhhHHHHHHHHHHHH
Q 009129 180 MNV---G-WGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 180 ~~~---g-~~~~f~i~~~~~~i~~~~ 201 (543)
+.. + ....|.+.++..++..+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 358 DLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 763 2 244444444444444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.5e-09 Score=122.03 Aligned_cols=161 Identities=14% Similarity=0.027 Sum_probs=130.8
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCch-hhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNV-TASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~-~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
+..++..++.....+.+...++.|+++.+|.+.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHH
Confidence 3444445555566677778899999999999998 999999999999999999999999998 99999988888888877
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 165 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (543)
+++....+ .+.++++.++.|++.++..+...+++.+..|++. |++++++.++..+
T Consensus 314 ~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~ 368 (1146)
T PRK08633 314 FLLPTAPS-------------------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQN 368 (1146)
T ss_pred HHHHHhhh-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHH
Confidence 77766533 6667777888999999999999999999999998 9999999999999
Q ss_pred HHHHHHhHHHHHhhc-ccccchhhhHHHH
Q 009129 166 IGALVASSVLVWIQM-NVGWGWGFGIPAV 193 (543)
Q Consensus 166 lg~~l~~~i~~~~~~-~~g~~~~f~i~~~ 193 (543)
+|.++++.+++.+.. .+++...|.+.+.
T Consensus 369 lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 369 VGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999888877776644 2344445555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=110.10 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=110.2
Q ss_pred HHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhh------------hHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHH
Q 009129 12 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASN------------NVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79 (543)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~------------~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~ 79 (543)
..++..+.+|++..+.|.+++ ++|.+..+.+. ...+..++..++.+++++++||+ |||+.++.+.+
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 344456678888888888774 67876543322 12223345556778899999999 99999999888
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+++.+++....... .....+....+...++..+..+....+.+|.+|.+. |+++.++
T Consensus 374 ~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~ 432 (502)
T TIGR00887 374 ILTVLFFVLGFAYNHL---------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGI 432 (502)
T ss_pred HHHHHHHHHHHHHHhc---------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHH
Confidence 8887776665542100 001111111111222223345667778899999999 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcc----------cccchhhhHHHHHHHHHHHH
Q 009129 160 FYLSINIGALVASSVLVWIQMN----------VGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~----------~g~~~~f~i~~~~~~i~~~~ 201 (543)
.+....+|.+++|.+.+++.+. .++...|.+.++..+++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 433 SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999988763 34455666666555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-07 Score=90.44 Aligned_cols=156 Identities=18% Similarity=0.107 Sum_probs=109.6
Q ss_pred HHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009129 30 YLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPT 109 (543)
Q Consensus 30 ~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (543)
.+.++.|++..|++.........+.+..++.|.++||+ ||||.-+...+++.++.+.--.
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------- 118 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------- 118 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-------------------
Confidence 34467899999999999999999999999999999999 9999999988888887754332
Q ss_pred CchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCC-ccccccccceeehhh-hhHhHHHHHHhHHHHHhhccccc--c
Q 009129 110 GAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETD-DGEREKKSSFFNWFY-LSINIGALVASSVLVWIQMNVGW--G 185 (543)
Q Consensus 110 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~lg~~l~~~i~~~~~~~~g~--~ 185 (543)
.+...++++|++-|++.....++-.+.......++. +++ -.+.-++... ..+.+-++++..++-++.+..+. .
T Consensus 119 -~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v 195 (354)
T PF05631_consen 119 -SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV 195 (354)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence 238899999999999999998888887544432222 111 1233332222 22223344444555556655554 7
Q ss_pred hhhhHHHHHHHHHHHHHHhcCcc
Q 009129 186 WGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 186 ~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
.+|..+.+..+++.++....+++
T Consensus 196 aPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 196 APFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred chHHHHHHHHHHHHHHHHhcccc
Confidence 88888888777777766555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=120.53 Aligned_cols=181 Identities=10% Similarity=-0.046 Sum_probs=132.8
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+...+..++..+.+.++.+.++.|+++.+|.+..+.|++.+.+.++..++.++.|+++|++ ++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 344455556666677788888999999999999999999999999999999999999999988 7777776666666665
Q ss_pred HHHHHHhhc--cc-CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 85 MTLLTLTAS--VS-GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 85 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.+.+.+... .. .....+. .+.....+.+.++++.++.|++.+...+...+++.+.+|++. ||++++..+
T Consensus 305 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~ 376 (1140)
T PRK06814 305 GLDLAFASSSVPAEPAQLKSI--LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANN 376 (1140)
T ss_pred HHHHHhcccccccccccccch--hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHH
Confidence 554444200 00 0000000 000000235567778888999999999999999999999999 999999999
Q ss_pred hhHhHHHHHHhHHHHHhhc-ccccchhhhHHHHH
Q 009129 162 LSINIGALVASSVLVWIQM-NVGWGWGFGIPAVA 194 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~-~~g~~~~f~i~~~~ 194 (543)
...++|..+++++.+.+.. ..++...|.+.++.
T Consensus 377 ~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 377 VLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999988863 34566555554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=102.95 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=116.0
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+...+...+....+++.....+.++++++|.++.+.+...+...++..++.++.|++.||+ |||+.+..+..+..++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~ 287 (385)
T TIGR00710 209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3344445555566777777888899889999999999999999999999999999999999 999999998888887776
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHh-
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN- 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~- 165 (543)
++......+ ......++...++.|++.+...+.......|..| ++ |+++.+..+....
T Consensus 288 ~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~ 346 (385)
T TIGR00710 288 LLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRLV 346 (385)
T ss_pred HHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHHH
Confidence 665542100 0123445555677889999888998888888876 44 8888888877665
Q ss_pred HHHHHHhHHHHHhhcccccchhh
Q 009129 166 IGALVASSVLVWIQMNVGWGWGF 188 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f 188 (543)
.|...+|. .+.+.+..+|...+
T Consensus 347 ~g~i~~~~-~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 347 LGAIVGYL-VSLIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHH-HHhccccChHHHHH
Confidence 45555555 44554444444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=108.28 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=124.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|.....+++.++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.+++.+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3344455666777777777777777888888887766555555555667788899999999999 999999999998888
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc-ccccccceeehhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-EREKKSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 162 (543)
+.+.+.+... .+.+.+++..++.|+|.+...+...++.+|..|.++.+ .+.++|..++.++.
T Consensus 307 ~~~~~~~~~~-----------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~ 369 (448)
T PRK09848 307 GYLLFFWVSV-----------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF 369 (448)
T ss_pred HHHHHHHcCc-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence 8777765421 23556667778899999999999999999998765421 11125888889999
Q ss_pred hHhHHHHHHhHHHHHhhccccc
Q 009129 163 SINIGALVASSVLVWIQMNVGW 184 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~ 184 (543)
...+|..+|+.+.+.+.+..|+
T Consensus 370 ~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 370 TRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999887665555
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=103.52 Aligned_cols=186 Identities=11% Similarity=0.001 Sum_probs=124.7
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
-++.|.+++..++..-++.+....+|.|+++.++ ............+...+..|++|+++||+ |+||++.++.+...
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~ 327 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMA 327 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHH
Confidence 4567888888888766777777799999987653 33333334455677889999999999999 99999999998777
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc--------------
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-------------- 148 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-------------- 148 (543)
++..........+ ...+.+.+.++.+...++.|.-......++.+.+|+++.+
T Consensus 328 i~~~~~~l~lp~~-------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 328 IFSALLFLTLPGT-------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred HHHHHHHHHhccc-------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence 7765443332100 1123566666555556666666777788888888741000
Q ss_pred -ccccccceeehhhhhHhHHHHHHhHHHHHhhccc-ccchhhhHHHHHHHHHHHHHHh
Q 009129 149 -EREKKSSFFNWFYLSINIGALVASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 149 -~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.+.+-|...|+......+|+++-|.+-+...+.. ++...|+...+..++.+++-+.
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0012556677777778888888887777766554 4777888777766655544333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-08 Score=102.67 Aligned_cols=159 Identities=10% Similarity=-0.051 Sum_probs=119.9
Q ss_pred hHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccC
Q 009129 17 RLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSG 96 (543)
Q Consensus 17 ~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~ 96 (543)
..........++.|+++.+|.|+.+.|...+...++..++.++.|++.||+ ++|+++..+.. ..+........+
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~---- 291 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence 344555566677889889999999999999999999999999999999998 99988887753 333333333332
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH
Q 009129 97 LKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 176 (543)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~ 176 (543)
+.+......++.|++.+...+...+.+.+..|++. +++++.+..+...++|..++..+.+
T Consensus 292 ---------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~ 351 (393)
T PRK11195 292 ---------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYS 351 (393)
T ss_pred ---------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHH
Confidence 25555666778899999988888888887655432 1688999999999999999998888
Q ss_pred HhhcccccchhhhHHHHHHHHHHHHH
Q 009129 177 WIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 177 ~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
.+ ...|-+..+.+.+...++.....
T Consensus 352 ~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 352 LL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 66 45777777777665555444433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=104.43 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=135.9
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
-|....+++..++..+++....+..+.|.+..++.+ ...+.......++..++.++.++++||+ |+||++..+.++.+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence 355666778888888888888888888888888877 5667778888999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc-ccccccceeehhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-EREKKSSFFNWFY 161 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 161 (543)
++.++..+... .+.+.+++..++.|++.+...+...++++|..+.++.+ .+.+.|..++.+.
T Consensus 302 ~~~~~~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 302 LGFLLLFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred HHHHHHHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 99998887751 23788888899999999999999999999999866432 1222577888888
Q ss_pred hhHhHHHHHHhHHHHHhhcccccc
Q 009129 162 LSINIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~ 185 (543)
....+|..+++.+.+.+.+..|+.
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcC
Confidence 899999999999988886655544
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=104.35 Aligned_cols=144 Identities=12% Similarity=0.003 Sum_probs=111.7
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHH-HHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWS-GTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
.+.+++..++..+++++..+.++.|+++ +|.+..+.+.+.++.. ++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 4555666677788899999999999986 9999999998888765 56788999999999999 9999999998888776
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
........+..+ ..|-...+.+.+..+.++.+++.+...+...+++.|.+|+++ |++.+++.+...
T Consensus 289 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 354 (356)
T TIGR00901 289 NAGFVWLASNGH--------HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHhcCc--------ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHH
Confidence 665544321000 000000124566777888899999999999999999999999 999999887765
Q ss_pred h
Q 009129 165 N 165 (543)
Q Consensus 165 ~ 165 (543)
+
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 5
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=97.36 Aligned_cols=166 Identities=10% Similarity=-0.033 Sum_probs=113.1
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchh---HHHHH-HHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRF---WTIAS-FSI 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk---~~l~~-~~~ 79 (543)
|..+.+.+..++....+|++.+++|.|+++ .|+|.. .+.......+...++ .++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 456777788999999999999999999964 677754 455544444444444 57788876 543 33222 333
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+++....+...+ .....+...+.+++.....+...++.+|.+|++. |+++.++
T Consensus 266 ~~a~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~ 320 (368)
T TIGR00903 266 LIAAFFLALAFELN-------------------RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGA 320 (368)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccch
Confidence 33333333333221 2333444556677777777888899999999999 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 160 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
.+...++|...+|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887763 56666776666555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=97.20 Aligned_cols=144 Identities=12% Similarity=0.068 Sum_probs=96.2
Q ss_pred HhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 009129 18 LAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGL 97 (543)
Q Consensus 18 ~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~ 97 (543)
..........+.++++++|.+..+.+...+...+...++.++.|++.||+ |||+.+..+..+..++.+.+.+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~---- 291 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS---- 291 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33444555567788888999999999999999999999999999999998 9999999999988888877776542
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHH
Q 009129 98 KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVW 177 (543)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~ 177 (543)
.........+.+.|.+...+. ....+..|.++ |+ +..+....++..+|+.++++
T Consensus 292 ---------------~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~~~~~ 345 (392)
T PRK10473 292 ---------------HAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RA---GVASSTLGIAQVCGSSLWIW 345 (392)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------cc---cHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333333222 22333444443 43 33344456777777778878
Q ss_pred hhcccccchhhhHHH
Q 009129 178 IQMNVGWGWGFGIPA 192 (543)
Q Consensus 178 ~~~~~g~~~~f~i~~ 192 (543)
+....|+.....+.+
T Consensus 346 l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 346 LAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHhccchhHHHHH
Confidence 777777765444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=104.09 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=150.8
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc--hhHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIYC 82 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~l~~~~~~~~ 82 (543)
..+.+.....+..++++.-...++.|.. ..+++..+++..+++..+...++.++.|+++|+. . ++.+..++.++..
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAG 376 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHH
Confidence 3445556666777888888888888886 8999999999999999999999999999999998 7 5667777777788
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++...+++.++ ...++..-++.|++.|.+....+..+.|....++ ...++++...
T Consensus 377 l~~~~~p~~~~-------------------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~ 431 (509)
T KOG2504|consen 377 LARLFLPFATT-------------------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLL 431 (509)
T ss_pred HHHHHHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHH
Confidence 88888888865 7778888899999999999999999999999998 9999999999
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcC
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGS 206 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~ 206 (543)
...++.++||.+.|++.+..| |...|..+++..+++.++++...
T Consensus 432 ~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999988877 99999999988888776655544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=102.33 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=100.3
Q ss_pred hhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 009129 44 NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLI 123 (543)
Q Consensus 44 ~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (543)
.......+...++.++.+++.||+ |||+.+.++.++..++.+.+....+ .......+..++.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~ 420 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-----------------DLYFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC-----------------CchHHHHHHHHHH
Confidence 333445566778889999999998 9999999999888888777766532 1123344445566
Q ss_pred HhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q 009129 124 ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 124 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
+++.+...+...++.+|.+|++. |++++++.+....+|.+++|.+.+ +. ..++..++.+.++..+++.+...
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH
Confidence 67777777888899999999998 999999999999999999999988 43 34566677776665555544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-08 Score=99.92 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=120.0
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCC-chhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQG-NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTL 87 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s-~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~ 87 (543)
.....++..+.+++...+++.|+++++|.+ ..+.+...+...+...++.++.|+++||+ |+|+.+........++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 455555566678888899999999999999 78999999999999999999999999998 9988888888888877777
Q ss_pred HHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHH
Q 009129 88 LTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIG 167 (543)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 167 (543)
+...... .+....++..++.|++.+...+...+++.|..|+++ |+++.++.+...++|
T Consensus 290 ~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~ 347 (352)
T PF07690_consen 290 LLLLPFS----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLG 347 (352)
T ss_dssp HCCSHHH----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 7655431 124566667788999999999999999999999988 999999999999999
Q ss_pred HHHHh
Q 009129 168 ALVAS 172 (543)
Q Consensus 168 ~~l~~ 172 (543)
..+||
T Consensus 348 ~~igP 352 (352)
T PF07690_consen 348 GIIGP 352 (352)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 99987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.8e-07 Score=94.55 Aligned_cols=151 Identities=10% Similarity=0.017 Sum_probs=108.0
Q ss_pred HHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 009129 12 NECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLT 91 (543)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~ 91 (543)
...+....++......+.+++ +.|.+..+.++......++..++.++++++.||+ |||+.+........++.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777788775 5799999999888888888889999999999999 99998776666655554433222
Q ss_pred hcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHH
Q 009129 92 ASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVA 171 (543)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~ 171 (543)
.... ..+.....++..+.|++.+...|...+...+..| ++ ++++.++.+.....+..++
T Consensus 289 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~~ 347 (401)
T PRK11043 289 SLLS--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFLA 347 (401)
T ss_pred HHhc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHHH
Confidence 1100 0124445555677888889989988888888776 35 8999999988877788888
Q ss_pred hHHHHHhhcccccc
Q 009129 172 SSVLVWIQMNVGWG 185 (543)
Q Consensus 172 ~~i~~~~~~~~g~~ 185 (543)
+.+.+.+.+.....
T Consensus 348 ~~~~g~l~~~~~~~ 361 (401)
T PRK11043 348 SLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHccCCChhH
Confidence 88888776643333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-07 Score=94.41 Aligned_cols=147 Identities=10% Similarity=-0.083 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+..++..++...+.+...+..+.++.+++|.+..+.+...+...++..++.++.|+++||+ |||+.+..+..+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666777788888999999999999999999999999999999999 999999988877655433
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh-Hh
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS-IN 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~ 165 (543)
........ ..+.+...++..+.+.+.+...+.....+.|..| ++ ++++.+..... ..
T Consensus 276 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~ 333 (377)
T PRK11102 276 WLVVSALL---------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFG 333 (377)
T ss_pred HHHHHHHH---------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHH
Confidence 33222110 0123344444445555556666666677777766 45 78887776543 34
Q ss_pred HHHHHHhHHHH
Q 009129 166 IGALVASSVLV 176 (543)
Q Consensus 166 lg~~l~~~i~~ 176 (543)
+|..+++.+++
T Consensus 334 ~g~~~g~~~~~ 344 (377)
T PRK11102 334 IGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHh
Confidence 66666665544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=84.28 Aligned_cols=104 Identities=8% Similarity=0.069 Sum_probs=85.4
Q ss_pred HHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHh
Q 009129 46 VTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIAL 125 (543)
Q Consensus 46 ~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 125 (543)
..+......+.+++++.+-|+. |.|+.+.++...+..-.......+ .+.++++-.+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~N--------------------~y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFPN--------------------SYYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhcc--------------------hHHHHHHHHHhhh
Confidence 6667777888999999999998 999999999998887665555442 6788999999999
Q ss_pred hccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH
Q 009129 126 GTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 176 (543)
Q Consensus 126 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~ 176 (543)
|.+..+...-.++++..+++. +++..++.-...+.+.++|..+..
T Consensus 115 Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhe
Confidence 999999999999999999888 777777776666777777655443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=98.55 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=107.7
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.++...++...+..........|.+..++ +....+.......+...++.++.++++||+ |||+.+..+.++..++..
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333333333 233344555566677788889999999998 999999988877665444
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc-ccccccceeehhhhhHh
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG-EREKKSSFFNWFYLSIN 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~ 165 (543)
...+... .+.+.+++..++.|++.+...+...++++|..|.++.+ .+.+.|..++.+.+...
T Consensus 310 ~~~~~~~-----------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~k 372 (444)
T PRK09669 310 LIFFIPP-----------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIK 372 (444)
T ss_pred HHHHhCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHH
Confidence 3333211 23666777778899999999999999999999754421 11124556778888889
Q ss_pred HHHHHHhHHHHHhhcccccc
Q 009129 166 IGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~ 185 (543)
+|..+|+.++|++.+..|+.
T Consensus 373 lg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 373 LGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 99999999999987777763
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-07 Score=94.55 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=134.9
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+....++..++...+.-...++...|+++.-+.+....+...++..++-.+.-...+++..|+ |.|++++++.+..++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3444555666666677777778889999754447777788777777777788888999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
=..+.+...+++ .........+..+.|+..|.+..+...++.+..|++. |+++.+++...
T Consensus 286 R~~l~a~~~~~~--------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~ 345 (400)
T PF03825_consen 286 RWLLYAYFSDPW--------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSAL 345 (400)
T ss_pred HHHHHHHhcCCc--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHH
Confidence 888877763200 0012223344567999999999999999999999999 99999988875
Q ss_pred -HhHHHHHHhHHHHHhhcccccch------hhhHHHHHHHHHHHHHHh
Q 009129 164 -INIGALVASSVLVWIQMNVGWGW------GFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 164 -~~lg~~l~~~i~~~~~~~~g~~~------~f~i~~~~~~i~~~~~~~ 204 (543)
..+|..+|..++|++.+++|-+. .+.+.++..++..+++..
T Consensus 346 ~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999877553 444455444444444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-07 Score=91.83 Aligned_cols=120 Identities=13% Similarity=0.223 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.+-.+.+.+|+.+..+-++.++++ .++|.+.+.-++.|+..+.+....-+|+...+|+++
T Consensus 433 iGHv~v~~lgLa~~~~Rf~~~S~L--------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 433 IGHVNVMYLGLACNVGRFLYYSYL--------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred hcccceeeehhhHHHHHHHHHHHh--------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 555566778888888888888887 377888888899999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceee
Q 009129 461 RSLCSALSL-TTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536 (543)
Q Consensus 461 rg~~~g~~~-~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 536 (543)
|.+++|+.. ..-++|-.+|..+.+.+....+ ....|..+++.+++.++++..+.+..+++
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l~~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTLALFISIQLLLKRR 553 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 999999887 5778899999999998875332 23467888888888887777766555544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-07 Score=89.10 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhh--cC-----------------CCchhhhhhHHHHHHHHhhhhhhhHHHhhhc
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQ--LN-----------------QGNVTASNNVTNWSGTCYITPLIGAFLADSY 67 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~--l~-----------------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~ 67 (543)
+++..+-|...+.|||++-...-..+.. .| .+...-..-..+.+++-+-+.++.|++.||+
T Consensus 329 lllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl 408 (528)
T KOG0253|consen 329 LLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL 408 (528)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh
Confidence 4455666678899999886655444321 11 1111122224456777888999999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCc
Q 009129 68 MGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDD 147 (543)
Q Consensus 68 ~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 147 (543)
|||+.+..+.+++.+.++.+..+.+ .+.....++.+|++...+ ..+++.|..|.+|...
T Consensus 409 -GRKkTMal~l~~f~iflfll~~c~~---------------rn~~tvllf~arafisg~----fqvaYvYtPEVyPTav- 467 (528)
T KOG0253|consen 409 -GRKKTMALSLILFGIFLFLLTTCKT---------------RNAYTVLLFTARAFISGA----FQVAYVYTPEVYPTAV- 467 (528)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHhcC---------------cchhHHHHHHHHHHHhch----heEEEEecCcccchhh-
Confidence 9999999999999999988887755 233456677778776444 4577899999999999
Q ss_pred cccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 009129 148 GEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 148 ~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~ 201 (543)
|+.+.|.......+|+++.|.++ ...+ -+-..+..+..+..+++.++
T Consensus 468 -----RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 468 -----RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred -----hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHH
Confidence 99999999999999999999998 3222 33344444444444444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=98.95 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=116.6
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|....+++..++..+..+...+..+.|.+..++ +....+...+...++..++.++.++++||+ |||+.++++..+.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 344555666677766666666666555544444 455666777777788889999999999999 999999988887776
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCc-cccccccceeehhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDD-GEREKKSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ 162 (543)
+.+........ ...+.+.+++.-++.|++.+...+...++++|..|.++- ..+.+.|..++...+
T Consensus 309 ~~~~~~~~~~~--------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~ 374 (473)
T PRK10429 309 SCGVLLLMGLA--------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM 374 (473)
T ss_pred HHHHHHHHhcc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence 66555432100 012355666667788999999999999999999875431 111114557788888
Q ss_pred hHhHHHHHHhHHHHHhhccccc
Q 009129 163 SINIGALVASSVLVWIQMNVGW 184 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~ 184 (543)
...+|..+|+.+.|++.+..|+
T Consensus 375 ~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 375 VVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999988766665
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=94.90 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=106.0
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
..+.+.+..++.....+++..+++.|+++.+|.+..+.+...+...+...++.+++|+++||+ |||+.+..+......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 344555555666667778888999999999999999999999999999999999999999999 9999888887777666
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
..++.+... +..+.....+..++.+++.|...+...+++++..| ++ +++..++.+...
T Consensus 305 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~ 362 (366)
T TIGR00886 305 AFLVVLGLV---------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGAIG 362 (366)
T ss_pred HHHHHhcCC---------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHHhc
Confidence 666654422 00124455555566667777777778888888887 34 888988888777
Q ss_pred hHH
Q 009129 165 NIG 167 (543)
Q Consensus 165 ~lg 167 (543)
++|
T Consensus 363 ~~g 365 (366)
T TIGR00886 363 NLG 365 (366)
T ss_pred cCC
Confidence 765
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-07 Score=91.92 Aligned_cols=176 Identities=11% Similarity=0.052 Sum_probs=139.8
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcC---CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHH
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQLN---QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSI 79 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~ 79 (543)
-|+.|.+.+........|+..-.-++.|.+..++ .++...|...+...+.-++.-.+..++-+|+ |.|+.++++.+
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 3455666665555656677766667888875443 4456678888888999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
++++=.+.++++++ .+.+.+.+.+.|+-.+.......-|+++.+|++- ..+...+
T Consensus 298 i~~iRi~~~~~~~~-------------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v 352 (412)
T PF01306_consen 298 IMAIRIIGSGFATN-------------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLV 352 (412)
T ss_dssp HHHHHHHHHHT--S-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHH
T ss_pred HHHHHHHHHhhhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 99999999998865 8889999999999999999999999999999876 6666666
Q ss_pred -hhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 160 -FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 160 -~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
++.+..+|..+.+.++|++.+++|++..|++.+.+.+...+....
T Consensus 353 ~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 353 GFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 356788999999999999999999999998877665554444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-07 Score=93.10 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=117.8
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhc-CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQL-NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
.+..++..++......++.++++.|+++.. +.+....+...+.+..+..++.+++|+++||+ ++||++.++.++..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 344455666666666677888999986532 44555556667777788899999999999998 9999999998888888
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.++....+. . .......+.|++.+.+.|+..+...+..+++. +... +...++
T Consensus 313 ~ll~~~~~~-------------------~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s-~~l~~~- 364 (410)
T TIGR00885 313 CLGSIFAGG-------------------H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGA-AGLVMA- 364 (410)
T ss_pred HHHHHHcCC-------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhH-HHHHHH-
Confidence 777776532 2 22455677888888889999999999998665 3222 222233
Q ss_pred hHHHHHHhHHHHHhhccc------ccchhhhHHHHHH
Q 009129 165 NIGALVASSVLVWIQMNV------GWGWGFGIPAVAM 195 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~------g~~~~f~i~~~~~ 195 (543)
.+|..+.|.+.|++.+.. +.+..|.++.+..
T Consensus 365 ~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 365 IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 399999999999999853 4777788766543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=89.79 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=128.1
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
....+.+.++..+.-.-....-...+-++-|++..++.+..........+..+++.++-||+ |||+.++.+..++.+..
T Consensus 271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 34455555555555444444555666678899999999999999999999999999999999 99999999999999988
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCC-CcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGI-KPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
+++........-. ..+-.+..+++.++..++.+.- .|...-+.+|.+|.+. |..++++.....
T Consensus 350 ~~~~~~~~l~~~~----------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~ 413 (485)
T KOG0569|consen 350 LLMSIALFLSNSF----------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVN 413 (485)
T ss_pred HHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHH
Confidence 7776553211000 0011122345555544444433 6788889999999998 999999888887
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCccee
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYR 210 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 210 (543)
.+..++-...-..+.+.+|- +.|.+..+...+..+..+...||.+
T Consensus 414 w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 414 WLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 77777666666666666654 4555555555555555555555533
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-06 Score=88.57 Aligned_cols=142 Identities=12% Similarity=-0.010 Sum_probs=100.1
Q ss_pred HHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009129 20 YYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKP 99 (543)
Q Consensus 20 ~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 99 (543)
........+.++++.+|.++.+.++.......+..++.++.+++.||+ ||+... +...+.++.+........
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~----- 294 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF----- 294 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh-----
Confidence 333344556778878999999999988888888888999999999998 743333 222222222222111100
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 100 SCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
...+.+.+..+.++.++|.+...|...++..|.+|+ + ++...+..+...++|..+++.+++++.
T Consensus 295 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 295 ---------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 001245667778889999999999999999998873 4 788888998888999999999999886
Q ss_pred cccccc
Q 009129 180 MNVGWG 185 (543)
Q Consensus 180 ~~~g~~ 185 (543)
....+.
T Consensus 359 ~~~~~~ 364 (394)
T PRK11652 359 QTGQFS 364 (394)
T ss_pred CCchHH
Confidence 654343
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-08 Score=98.80 Aligned_cols=142 Identities=17% Similarity=0.231 Sum_probs=112.8
Q ss_pred hhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchh
Q 009129 348 LSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTI 427 (543)
Q Consensus 348 ~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (543)
++....+..+++.|+.+.+ .+| +.+...+.+|..+++++.+..++. ...
T Consensus 73 l~~vf~v~~~i~sPl~gyL----adr-------yNR~~v~~vG~~iW~~Av~~~~fs--------------------~~F 121 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYL----ADR-------YNRKRVIAVGIFIWTLAVFASGFS--------------------NHF 121 (493)
T ss_pred hhHHHHHHHHHHHHHHHHH----Hhh-------cCcceEEeeHHHHHHHHHHHHHHH--------------------HHH
Confidence 3343445556667776663 444 556677899999999999888876 377
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcch
Q 009129 428 FWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGH 507 (543)
Q Consensus 428 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~ 507 (543)
|++.+.-.+.|+||+...|..++++++.+|++.|+++.+++++...+|+.+|..+...+.++++. |
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~-----W--------- 187 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW-----W--------- 187 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc-----e---------
Confidence 88888899999999999999999999999999999999999999999999998887777654331 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 508 LDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 508 ~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
.+.|+..++++++.+++..++.++-++
T Consensus 188 -r~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 188 -RWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred -EEEEEeehHHHHHHHHHHHhhccCccc
Confidence 356888899998888887777666554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-06 Score=82.86 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=126.2
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
|.+.+-.=+.++.+|.++.++|.++. |.|+|..+.|+..+...+.+....+..-++++|.-.+|+..+...+++.+|.+
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33444444577899999999999886 67999999999999999999999999999999876899999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+.+.+. + .. +.. -++.|+|.|+..|....++.+..++.+. -++..++.+....+
T Consensus 290 G~~~~P~-----------------~-~~-~lw-~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~GYl 344 (395)
T COG2807 290 GLLLAPG-----------------Q-LP-ILW-ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGVGYL 344 (395)
T ss_pred HHHHhhh-----------------h-HH-HHH-HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhhhHH
Confidence 8887753 1 11 222 4889999999999999999998876541 44455555555555
Q ss_pred HHHHHhHHHHHhhccc-ccchhhhHHHH
Q 009129 167 GALVASSVLVWIQMNV-GWGWGFGIPAV 193 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~-g~~~~f~i~~~ 193 (543)
=+.+||.+.|++-+.. +|+.+...-+.
T Consensus 345 lAa~GP~l~G~lhDa~gsw~~~~~~l~~ 372 (395)
T COG2807 345 LAAFGPWLFGFLHDATGSWSAPLVLLAL 372 (395)
T ss_pred HHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence 5667899999998766 48766555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-06 Score=70.53 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=84.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.++++.+..+..+..++....... .+.+......++.+++.+...+....++.|..|++.
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 444466677777777766655443 244556667788999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA 530 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ 530 (543)
|++++++.+....+|..+++.+.+.+.+.. ++...|++.+.+..+..+...+..
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999887521 123456666666666655555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-06 Score=87.16 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=128.4
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|....+++..++...++.-..+.+..|.+..+|.++.+..+.......+..++.++..++.+|+ |+|+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4555666777777777777777778888888898888888888888888888899999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccc-ccceeehhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREK-KSSFFNWFYL 162 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~ 162 (543)
+.+...+... ++....++..++.++|.+...+...++++|..+.+|-.+-.+ -|..++.+..
T Consensus 315 ~~~~~~f~~~-----------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF 377 (467)
T COG2211 315 GYLLLYFTPA-----------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF 377 (467)
T ss_pred HHHHHHhhcC-----------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence 9999988752 457888888999999999999999999999987655322222 2344445555
Q ss_pred hHhHHHHHHhHHHHHhhccccc
Q 009129 163 SINIGALVASSVLVWIQMNVGW 184 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g~ 184 (543)
..-+|..++..+.|++...+|+
T Consensus 378 ~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 378 FRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 6667888887777776555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-06 Score=90.92 Aligned_cols=183 Identities=10% Similarity=0.002 Sum_probs=128.1
Q ss_pred HHHHHHHHhHhHHHhHHHHHHHHhhhcCCCch----hhhhhHHHHHHHHhhhhhhhHH----HhhhccchhHHH--HHHH
Q 009129 9 ISGNECCERLAYYGMSTNLVNYLQKQLNQGNV----TASNNVTNWSGTCYITPLIGAF----LADSYMGRFWTI--ASFS 78 (543)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~----~~~~~~~~~~~~~~i~~~~~G~----laD~~~Grk~~l--~~~~ 78 (543)
+++...+....+....+.++.|.+++.+.+.. ..++..+.-.+...+.+|+..+ +.||..+.+... .+|.
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 33444455566777777788888776554422 2567777767777777666554 455411333433 7788
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 79 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
++..++...++++..... ++...+.+.++...++.++|.....|...+++++..|++. |+++++
T Consensus 357 ~l~~~~~~~~~~~~~~~~----------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g 420 (475)
T TIGR00924 357 LFCGASFLTFAASIWFAD----------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLG 420 (475)
T ss_pred HHHHHHHHHHHHHHhhcC----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHH
Confidence 888888777765421000 0012358888999999999999999999999999999998 999999
Q ss_pred hhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 159 WFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+++....+|..+++.+........+|...|...++..++..++++...|
T Consensus 421 ~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 421 MWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887766667887777777665555544444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=89.52 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccch------hHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGR------FWTIASFS 78 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr------k~~l~~~~ 78 (543)
..|.+.+..+++..+++.+..++|.|+.+.+|++-.+.|+..++..+...+..+++|.++||...| ++-+.-+.
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 356688999999999999999999999999999999999999999999999999999999998331 22222222
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceee
Q 009129 79 IIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 158 (543)
Q Consensus 79 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (543)
.....+..++.+... +||+ .......+.++..+.|+..++ ...-..|..|.+ -+..++
T Consensus 339 ~~~~~ai~l~~l~~~------~~~~-----~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~apq~-------a~~l~g 396 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFT------SDEH-----RLLAVILLTIAIGLSGFNISG----FYKNHQDIAPQH-------AGFVMG 396 (466)
T ss_pred HHHHHHHHHHeeeec------CCCc-----chHHHHHHHHHHHHcccchhh----hHhhhhhccchH-------HHHHHH
Confidence 333333333333211 1111 001111222222222222222 222222323332 688899
Q ss_pred hhhhhHhHHHHHHhHHHHHhhcc---cccchhhhHHHHHHHHHHHHHHhc
Q 009129 159 WFYLSINIGALVASSVLVWIQMN---VGWGWGFGIPAVAMAIAVVFFFSG 205 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~~~~---~g~~~~f~i~~~~~~i~~~~~~~~ 205 (543)
+.+...++..+++|.+.+.+.++ -.|+..|++.+++.+++.+.+..+
T Consensus 397 ~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 397 IINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99999999999999999998842 369999999999888877666554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=75.50 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=113.2
Q ss_pred HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 009129 26 NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDA 105 (543)
Q Consensus 26 ~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 105 (543)
.-...+++++|+|.+|...+-....++..++ ++.|.+.|++ |.+.++++|.+...+|..++.++.+.. +
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~-i-------- 91 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR-I-------- 91 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc-c--------
Confidence 3445688899999999999999999998875 8899999999 999999999999999998887775411 0
Q ss_pred CCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccc
Q 009129 106 CHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWG 185 (543)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~ 185 (543)
...+.+.+.+..++.|.|.+.+..++.....+.||+ + ||.+.++.-....+++.+-..+...+.+.-.-+
T Consensus 92 ---~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 92 ---PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred ---CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 112456666666777777766666666667789985 5 999999998888888877666555554443233
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 009129 186 WGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 186 ~~f~i~~~~~~i~~~~~~ 203 (543)
..+.+.....++.++...
T Consensus 162 fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333333334443333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.2e-06 Score=80.52 Aligned_cols=145 Identities=22% Similarity=0.288 Sum_probs=111.6
Q ss_pred HHHHHHHhhhcCCCc--hhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 009129 25 TNLVNYLQKQLNQGN--VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCD 102 (543)
Q Consensus 25 ~~l~~~l~~~l~~s~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 102 (543)
...+.+. .+++.+. .+.++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+.+.+..+
T Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3344433 4455444 4789999999999999999999999999 9999988888776666556655532
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCC-CCccccccccceeehhhh-hHhHHHHHHhHHHHHhhc
Q 009129 103 KDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDE-TDDGEREKKSSFFNWFYL-SINIGALVASSVLVWIQM 180 (543)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~l~~~i~~~~~~ 180 (543)
.....+++.|+.+|++.+...|...+++.|..|+ ++ |+...+.... ...+|..++|.+++.+..
T Consensus 92 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 92 --------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred --------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2378888999999999999999999999999987 44 8888888888 577888888877776655
Q ss_pred c--cccchhhhHHHHH
Q 009129 181 N--VGWGWGFGIPAVA 194 (543)
Q Consensus 181 ~--~g~~~~f~i~~~~ 194 (543)
. .+|+..|.+....
T Consensus 158 ~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 158 ALLWGWRAAFLLAALL 173 (338)
T ss_pred HHhcchHHHHHHHHHH
Confidence 3 5788855555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-06 Score=87.25 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=100.4
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
...++...++..+...........|.+..++. ....+.+.+.+.++..++.+++++++||+ |+|+++..+..+..+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 33444445555555554445555555544443 33445667778888899999999999999 99998876655544433
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccc-cceeehhhhhH
Q 009129 86 TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK-SSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~ 164 (543)
++..+... .+...+++..++.|++.+...+...++++|..+.++-.+..+| +..++...+..
T Consensus 308 ~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~ 370 (460)
T PRK11462 308 LAMFFVPM-----------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL 370 (460)
T ss_pred HHHHHhch-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence 33333221 1133344455667888888788888899998875431111112 33356666778
Q ss_pred hHHHHHHhHHHHHhhccccc
Q 009129 165 NIGALVASSVLVWIQMNVGW 184 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~ 184 (543)
.+|..+|+.++|++....|+
T Consensus 371 Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 371 KLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 89999999888887665555
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-05 Score=73.71 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=90.5
Q ss_pred HHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009129 30 YLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPT 109 (543)
Q Consensus 30 ~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (543)
|+.+.+++...|+|...-+......+...+.|-++|+- |||+.-+.- ++..+++.+....|
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvty----citYiLsCiTKhSp-------------- 122 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTY----CITYILSCITKHSP-------------- 122 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeee----hHHHHHHHHhhcCC--------------
Confidence 44556788888999888887778888889999999998 999976544 34444444443222
Q ss_pred CchHHHHHHHHHHHHhhccCCCcchhhh-hhcccCCCCccccccccceeehhh--------hhHhHHHHHHhHHHHHhhc
Q 009129 110 GAQTAVTFVALYLIALGTGGIKPCVSSF-GADQFDETDDGEREKKSSFFNWFY--------LSINIGALVASSVLVWIQM 180 (543)
Q Consensus 110 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~--------~~~~lg~~l~~~i~~~~~~ 180 (543)
+.-.++++|++-|+..+...++-.+. ++|.-+++ +.---|.. ....+-++++.+.+-++.+
T Consensus 123 --qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr--------~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd 192 (454)
T KOG4332|consen 123 --QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR--------GFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD 192 (454)
T ss_pred --ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc--------CChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 25678999999999999887777665 55554332 22212221 1222334444455555666
Q ss_pred ccc--cchhhhHHHHHHHHHHHHHH
Q 009129 181 NVG--WGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 181 ~~g--~~~~f~i~~~~~~i~~~~~~ 203 (543)
+++ --.+|-..+....++..+.+
T Consensus 193 ~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 193 TFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HhccCCCCchHHHHHHHHHHHHHHH
Confidence 554 44556555555555544443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=85.85 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=132.2
Q ss_pred HHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHhh
Q 009129 15 CERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG--RFWTIASFSIIYCLGMTLLTLTA 92 (543)
Q Consensus 15 ~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rk~~l~~~~~~~~i~~~~~~~~~ 92 (543)
..+...-..-+.++++..+++..+.-+.|.+..-.++.+.++..+.|.++||+ + |-..-..+++.....+...++++
T Consensus 281 ~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~ 359 (464)
T KOG3764|consen 281 FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT 359 (464)
T ss_pred hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh
Confidence 33445555567788889899996666999999999999999999999999999 9 75666666666666666667775
Q ss_pred cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHh
Q 009129 93 SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVAS 172 (543)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~ 172 (543)
+ +..+++-++..+++.+.......+......+.++..+....|...++...+..+|..+||
T Consensus 360 ~-------------------~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP 420 (464)
T KOG3764|consen 360 S-------------------IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGP 420 (464)
T ss_pred h-------------------HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccc
Confidence 4 777777788888888888888888777777766644333377788888889999999999
Q ss_pred HHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 173 SVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 173 ~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.++|.+.+.+|++|.-.+.+...++..-++.+
T Consensus 421 ~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 421 TFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred cccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777766654443333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=82.43 Aligned_cols=167 Identities=16% Similarity=0.052 Sum_probs=110.3
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+...+..++....+++.....|.++++.+|.+..+.++.......+..++..+.+.+.++. ++++.+.....+..++.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Confidence 34444555666677777778889999999999999999998777888888778888776555 45454444444444444
Q ss_pred HHHHHhhc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 86 TLLTLTAS-VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
.++..... .+ ......+++.++.++|.+...|+..+..- .+.+.+ +|++.+......
T Consensus 299 ~l~~~~~~~~~---------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a~~~~~~ 356 (413)
T PRK15403 299 ALLIVGNLLWP---------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSASLNMVI 356 (413)
T ss_pred HHHHHHHHHcc---------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHHHHHHHH
Confidence 44432210 00 11334567778889999988888875432 222211 677888888877
Q ss_pred hHHHHHHhHHHHHhhcccccchhhhHHHHHHH
Q 009129 165 NIGALVASSVLVWIQMNVGWGWGFGIPAVAMA 196 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~ 196 (543)
..+..+++...+++... +-+.+|....+...
T Consensus 357 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 78888888888888664 55666666554433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=86.97 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=116.6
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhh--hcCCCch------hhhhhHHHHHHHHhhhhhhh----HHHhhhccchhHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQK--QLNQGNV------TASNNVTNWSGTCYITPLIG----AFLADSYMGRFWTI 74 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--~l~~s~~------~~~~~~~~~~~~~~i~~~~~----G~laD~~~Grk~~l 74 (543)
.+..+..+...+.++.+..-++.++.. .-+.+.. ..++..+.-.+...+..++. +++.||+ +..+.+
T Consensus 275 ~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~ 353 (500)
T PRK09584 275 MIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKF 353 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHH
Confidence 334444555666677777777666543 1112211 24555555555566666666 6666666 777889
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccc
Q 009129 75 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 154 (543)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 154 (543)
.+|.++..++.+.++...+... .+ ...+.+.+....++.|+|.+...|+..+++.+..|++. |+
T Consensus 354 ~~G~~l~~l~f~~l~~~~~~~~---~~-------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg 417 (500)
T PRK09584 354 AIGMVLCSGAFLVLPLGAKFAN---DA-------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG 417 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CC-------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence 9999999999888877643111 00 11235678889999999999999999999999999998 99
Q ss_pred ceeehhhhhHhHHHHHHhHHHHHhhc----------ccccchhhhHHHHHHH
Q 009129 155 SFFNWFYLSINIGALVASSVLVWIQM----------NVGWGWGFGIPAVAMA 196 (543)
Q Consensus 155 ~~~~~~~~~~~lg~~l~~~i~~~~~~----------~~g~~~~f~i~~~~~~ 196 (543)
++++.++.+..+|..++..+.+.... ..++...|...++..+
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 469 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATA 469 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence 99999988888888887766653321 1125566666555444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=62.65 Aligned_cols=72 Identities=19% Similarity=0.094 Sum_probs=61.8
Q ss_pred HHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHH
Q 009129 8 LISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~ 81 (543)
.+-...++...+.-.+.++++.|++ +.|+|..++|.+.++..+...+++|+.|+++||+ ||+|.++....++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 3445666677777888999999997 5999999999999999999999999999999999 9888887776554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-06 Score=90.52 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=109.3
Q ss_pred hhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCc
Q 009129 32 QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA 111 (543)
Q Consensus 32 ~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (543)
++.+|.|+.+.|.......++..++..+.+++.+|+ +.|+++.++.++..++........+...... .-.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---------gi~ 349 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---------GIS 349 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc---------CCC
Confidence 457899999999999999999999999999999998 9999999999999988766542211000000 000
Q ss_pred hHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccc
Q 009129 112 QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183 (543)
Q Consensus 112 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g 183 (543)
+.......-++.+++.+........++++..|++. +++.+++.....++|..+++.+++++.++.|
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12234444577888888888889999999999998 9999999999999999999999999988877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=85.33 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=105.6
Q ss_pred HHHhHhHHHhHHHHHHHHhhhcCCCch----hhhhhHHHHHHHHhhhhhhhHHHhhhccchhHH-------HHHHHHHHH
Q 009129 14 CCERLAYYGMSTNLVNYLQKQLNQGNV----TASNNVTNWSGTCYITPLIGAFLADSYMGRFWT-------IASFSIIYC 82 (543)
Q Consensus 14 ~~~~~~~~~~~~~l~~~l~~~l~~s~~----~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~-------l~~~~~~~~ 82 (543)
.+....+......++.|.++..+.+.. ..++..+...+...+..|+.|++.||+ |||+. +.+|.++..
T Consensus 279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~ 357 (489)
T PRK10207 279 VVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCS 357 (489)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHH
Confidence 334455666667788888754443211 224444445566778888899999998 98873 777888877
Q ss_pred HHHHHHHHhhc-ccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 83 LGMTLLTLTAS-VSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 83 i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
++.+.++.... ... . + ...+.+.+....++.|+|.+...|...+++.+..|++. ++.+++.++
T Consensus 358 ~~~~~~~~~~~~~~~------~---~-~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~ 421 (489)
T PRK10207 358 LGFLTAAAAGMWFAD------A---Q-GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWF 421 (489)
T ss_pred HHHHHHHHHHHhhcC------C---C-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHH
Confidence 77655432110 000 0 0 11235667778899999999999999999999999998 999999999
Q ss_pred hhHhHHHHHHhHHHHHh
Q 009129 162 LSINIGALVASSVLVWI 178 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~ 178 (543)
...++|..+|..++.+.
T Consensus 422 l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 422 LTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998887655
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6e-06 Score=85.84 Aligned_cols=174 Identities=10% Similarity=-0.056 Sum_probs=138.0
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
.+++...++..++.--+.+++=-++ ++++-....-|.+...--.+-.+.-++.+++-.|+ |+-+++.+++.+..+=.+
T Consensus 374 llff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~ 451 (618)
T KOG3762|consen 374 LLFFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFL 451 (618)
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHH
Confidence 3455666667777777777775555 46776666666333333445556778899999999 999999999999999888
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH-h
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI-N 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ 165 (543)
.+....+ +|+.+-.-+++|+..+.++.++.+|+++..|++- |.++-++.+... .
T Consensus 452 ~~S~L~n-------------------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 452 YYSYLQN-------------------PWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHG 506 (618)
T ss_pred HHHHhcC-------------------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcc
Confidence 8877744 7777788899999999999999999999999998 888888777654 7
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+|-.+|.+|+|.+.+.+|-+..|.+.++..++.++.+....+
T Consensus 507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999998877777666555433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=68.49 Aligned_cols=187 Identities=10% Similarity=-0.131 Sum_probs=98.6
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
.+.+....++.+...=..-...++|+.+-++-+---++..-..-.+...+..+..|...||. -|+|++..+.++.-++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 44455555665555555555667777765554444455555556777888899999999998 99999998877654433
Q ss_pred HHHHHh----hcccCCCCCCCCCCCCCCCchHHHHHHHHHHH-HhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 86 TLLTLT----ASVSGLKPSCDKDACHPTGAQTAVTFVALYLI-ALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 86 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
...... -..+.- +.. .......+++...+. .+..=.......+.=-|+...-.+.+...+.+..+..
T Consensus 83 ~~s~~~~~~l~~~~~~------~~~--~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~m 154 (432)
T PF06963_consen 83 AASCALFLLLLSYPSS------SSQ--SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATM 154 (432)
T ss_pred HHHHHHHHHHHhCCcc------ccc--cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHH
Confidence 222111 110000 000 011122222222222 2111111122222223332211101111144444444
Q ss_pred hhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHH
Q 009129 161 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVF 201 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~ 201 (543)
.=.=-+.-++||++.|.+....+...+..+.++..++++..
T Consensus 155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 44445678899999999988888887777666666666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0028 Score=65.27 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~ 487 (543)
+.|.+++.++..|+-.+....-.+..+.|..|++.|..++|....+-.+|..+++.+.-.+.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56667777888899888888888889999999999999999999999999998888776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00052 Score=70.68 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=112.1
Q ss_pred HHHHHHHHhhh-cCCCchhhh-hhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 009129 24 STNLVNYLQKQ-LNQGNVTAS-NNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSC 101 (543)
Q Consensus 24 ~~~l~~~l~~~-l~~s~~~~~-~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 101 (543)
-|++..|+.+. .|++..|+. -+.-...-......++...++|.. |.|++++++.+...+...++...++
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s-------- 93 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS-------- 93 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc--------
Confidence 46788889876 888887764 333344445566777888999998 9999999999998888888887755
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc-
Q 009129 102 DKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM- 180 (543)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~- 180 (543)
...+-+.-++.|++.+. ..+..+++=...|+++ ..++.+....+.-+|.+++..++-.+..
T Consensus 94 -----------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 94 -----------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred -----------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777778888888766 5566677777777666 6677788888888888888777765544
Q ss_pred -ccccchhhhHHHHHHHHHHHHHHh
Q 009129 181 -NVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 181 -~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
..++.....++.....+++++.++
T Consensus 156 ~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 156 GGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666776666666555444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=76.97 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=141.2
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhh-cCCCch-----h-----hhhhHHHHHHHHhhhhhhhHHHhhhccc-h
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQ-LNQGNV-----T-----ASNNVTNWSGTCYITPLIGAFLADSYMG-R 70 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~s~~-----~-----~~~~~~~~~~~~~i~~~~~G~laD~~~G-r 70 (543)
++.+..++.++++..++++.+..+.+.|+.++ ++-++. + ..+....+++.+.+.+++.-++.+++ | |
T Consensus 257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-g~~ 335 (477)
T TIGR01301 257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-GAG 335 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 56788899999999999999999999998753 443221 1 12344445666667777888899998 9 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccC-C-CCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcc
Q 009129 71 FWTIASFSIIYCLGMTLLTLTASVSG-L-KPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDG 148 (543)
Q Consensus 71 k~~l~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 148 (543)
|+...++.++.+++.....+..+..+ . ....+++.-+|.....+..++.-.+.|+..+.....-.+++++..++++.
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~- 414 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGA- 414 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCC-
Confidence 77778898888888888775543110 0 00001111122222235566667789999999999999999999985431
Q ss_pred ccccccceeehhhhhHhHHHHHHhHHHHHhhcccc--cchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 149 EREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG--WGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 149 ~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g--~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
+.|..+|+++..+.+...+..+..|.+.+.+| -.+.+.+.++..+++.+..+...|+
T Consensus 415 ---~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 415 ---GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred ---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 16999999999999999999887777655554 4567888888888877766665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00024 Score=71.94 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
.+-.+..|+-.-+--.+-++++.|+.+..|.+..+++..++.+..+.+++.+++-++-.|+ -..|.+....++..+-.+
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3344555555455556668899999888999999999999999999999999999999998 999999888776666555
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
...+..+ ..-..+.++.|+..+...|+..+...+..|++.. ++ +..-...-.
T Consensus 318 ~~~l~~g--------------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~---s~~l~maiv 369 (422)
T COG0738 318 AVALIGG--------------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VG---SGLLVMAIV 369 (422)
T ss_pred HHHHhcC--------------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cc---ceeeeehee
Confidence 5555532 2334556788999999999999999999994431 22 222233456
Q ss_pred HHHHHhHHHHHhhcccccchhhh
Q 009129 167 GALVASSVLVWIQMNVGWGWGFG 189 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~ 189 (543)
|+.+-|.+-|++.+..|-...+.
T Consensus 370 GGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 370 GGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred cchHHHHHHHHHHHhhhhHHHHH
Confidence 78888999999999988877766
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.3e-05 Score=81.31 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=111.9
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhh----ccchhHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADS----YMGRFWTIASFSII 80 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grk~~l~~~~~~ 80 (543)
.+|..++..+|.....|++..++++|+.+..|+|..+++.....+.++..++.++.|+++|| . .+|........+
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL 352 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 45778899999999999999999999998677999999999999999999999999999999 6 777777777766
Q ss_pred HHHHH-HHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 81 YCLGM-TLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 81 ~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+.. +.+..... ......+.+....+.+...++......+...++.. |-...+.
T Consensus 353 ~~~~g~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~~~~~ 408 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV-------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALTTVSA 408 (495)
T ss_pred HHHHHHHHHHhhcc-------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHHHHhh
Confidence 66544 44443321 22233333334444555556666667777655541 4444444
Q ss_pred hhhhHhHHH-HHHhHHHHHhhcccccchhhhHHH
Q 009129 160 FYLSINIGA-LVASSVLVWIQMNVGWGWGFGIPA 192 (543)
Q Consensus 160 ~~~~~~lg~-~l~~~i~~~~~~~~g~~~~f~i~~ 192 (543)
+..+.+.+. ..+++..+....+++|...|....
T Consensus 409 ~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 409 IIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred hhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 444444433 334444555566678888884444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-07 Score=97.42 Aligned_cols=185 Identities=14% Similarity=0.047 Sum_probs=113.2
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLG 84 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~ 84 (543)
+....+...++..+..+........++.+..+.+.. -.......+...++.+++.++.||+ |||+.++.+..+++++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444455555455544444444555556666655 2223334455667777788999998 9999999999988888
Q ss_pred HHHHH-HhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 85 MTLLT-LTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
.+.++ .....+.. ++..+...+....+.......+..+....+.+|.+|.+. |+++.++.+..
T Consensus 330 ~~~~~~~~~~~~~~----------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~ 393 (451)
T PF00083_consen 330 SLILGIIFFLGVSS----------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAV 393 (451)
T ss_pred cccccccccccccc----------ccccccccceeeeeccccccccccccccccccccccccc------ccccccccccc
Confidence 77775 11100000 000012222212222222222445677788999999999 99999999999
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
..++..+++.+..++.+..+-...|.+.++..++..+......||
T Consensus 394 ~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 394 GRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 999999999888888777663445566555555555544444444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00046 Score=70.45 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=123.7
Q ss_pred HHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 009129 30 YLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPT 109 (543)
Q Consensus 30 ~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (543)
|--+.+|++..|+......+..+..++-...|++..|..++|+.-.++..+..++.....++...
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~--------------- 298 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL--------------- 298 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 33345899999999999999999999999999998866699999999999999888877766431
Q ss_pred CchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc---------
Q 009129 110 GAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM--------- 180 (543)
Q Consensus 110 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~--------- 180 (543)
.+.+.+..+.++.|+|.|.+.....+.+.|...+++ .|..++.+..+..++..+|-.++|.+.+
T Consensus 299 -~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~ 371 (403)
T PF03209_consen 299 -GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNS 371 (403)
T ss_pred -ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 247889999999999999999999999999998888 8999999999999988888888876532
Q ss_pred -ccccchhhhHHHHHHHHHHHHHH
Q 009129 181 -NVGWGWGFGIPAVAMAIAVVFFF 203 (543)
Q Consensus 181 -~~g~~~~f~i~~~~~~i~~~~~~ 203 (543)
..+|...|.+-++.+++++.+..
T Consensus 372 ~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 372 PALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 23466667776666666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.5e-05 Score=76.95 Aligned_cols=166 Identities=11% Similarity=0.080 Sum_probs=126.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc---cchhHHHHHHHH-
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY---MGRFWTIASFSI- 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grk~~l~~~~~- 79 (543)
+.+..+..+.+...+++-.=.++.+.|++ .+|.+..-.+.+-.+.-+...+.+|+.|..+||. +||||-++....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 34455666667777777777788889885 7999998888888888888999999999999975 487766655544
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccc-eee
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS-FFN 158 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~ 158 (543)
..+++.++++.+.+.... -||+.-.-...-....++++..+.=++.-..+..+-++++|...+++ +.+ +.+
T Consensus 111 ~i~~~l~Lig~aaDig~~--lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~~Ans 182 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL--LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKTRANS 182 (498)
T ss_pred HHHHHHhhhhhHhhhhHH--hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhhccch
Confidence 566778877777552221 34442111234567788888888888988899999999999998777 333 999
Q ss_pred hhhhhHhHHHHHHhHHHHHh
Q 009129 159 WFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 159 ~~~~~~~lg~~l~~~i~~~~ 178 (543)
++...+.+|..+|..+++|.
T Consensus 183 ~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 183 VFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hHHHHHHhcceeeeeccccc
Confidence 99999999999998888854
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00061 Score=72.75 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=79.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcc--
Q 009129 382 TQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA-- 459 (543)
Q Consensus 382 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-- 459 (543)
++++.+.+|.++.+++.+.+.... .........+.+..+|.+...|...+++.|.+|++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~ 134 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP 134 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence 555677889999888876554321 01112333344555666677777788999999975
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 460 MRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 460 ~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
.|+++.++.....++|+.+++.+.+.+.+.. +| .+.|.+.++.++++++.++...|+
T Consensus 135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7999999999999999999999999987532 23 455766666666665555443333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=81.06 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=89.0
Q ss_pred hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--hHhhh-----------h
Q 009129 347 SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVV--RLNIV-----------K 413 (543)
Q Consensus 347 ~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~--~~~~~-----------~ 413 (543)
.+...+.++..+..++.++ +.+| .++++.+.+|.++++++.++.++.+.. +++.. .
T Consensus 72 ~i~s~~~i~~~~~~i~v~~----~~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~ 140 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSY----FGTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA 140 (633)
T ss_pred eeeehhhHHHHHHHHHHHH----hhcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence 3444444555555555444 3444 444566788999999998877654311 00000 0
Q ss_pred ccCccC----------------CCCc--cchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHH
Q 009129 414 RNNYYD----------------IETI--PMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVG 475 (543)
Q Consensus 414 ~~~~~~----------------~~~~--~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig 475 (543)
..+.++ ++.. ...+..+++.-++.|+|++...+...+++.|.+|++.|+.+.|+.+....+|
T Consensus 141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG 220 (633)
T TIGR00805 141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG 220 (633)
T ss_pred ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence 000110 0000 1134556678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh
Q 009129 476 NYLSTLLVTIVTKV 489 (543)
Q Consensus 476 ~~l~~~i~~~~~~~ 489 (543)
..+|+.+.+.+.+.
T Consensus 221 ~~lG~llgg~l~~~ 234 (633)
T TIGR00805 221 PAFGYLLGSFCLQI 234 (633)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.4e-05 Score=77.02 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=123.7
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhh--------hHHHHHHHHhh-hhhhhHHHhhhccchhHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASN--------NVTNWSGTCYI-TPLIGAFLADSYMGRFWTI 74 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~--------~~~~~~~~~~i-~~~~~G~laD~~~Grk~~l 74 (543)
+..+..+..-|...+++|+.-.+...-++ .++..+.+... ...+....+.+ +..+..++.|+. |||++.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 55566677777888899988777666553 44544332222 22233333333 677788889998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccc
Q 009129 75 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 154 (543)
Q Consensus 75 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 154 (543)
+.+.+++.+..+.++...+ | ++.......++. +.+-++.-+-..+.-.+-+|.||.+. |+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~---------~---~~~~~Gf~v~y~--l~~ff~NFGPn~ttfivpaE~FParv------R~ 441 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN---------Q---LENTIGFVVLYS--LTFFFGNFGPNATTFIVPAEIFPARV------RS 441 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc---------c---ccccCceeehHH--HHHHHHhcCCCceeEEeehhhchHHH------hh
Confidence 9999999998888877643 1 111111222222 22233333334455666789999999 99
Q ss_pred ceeehhhhhHhHHHHHHhHHHHHhhc-----ccccchhhhHHHHHHHHHHHHHHh
Q 009129 155 SFFNWFYLSINIGALVASSVLVWIQM-----NVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 155 ~~~~~~~~~~~lg~~l~~~i~~~~~~-----~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
.+-++.....-+|+++|...-.++.+ ..+.+..|++.+..++++.+..++
T Consensus 442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 99999999999999999988899988 778999999988877777665443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=71.95 Aligned_cols=121 Identities=7% Similarity=0.038 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
+++++.+.+|.++.+++.++.++.... ....+.+.+++..++.|+|.+...+.....+.+.+| +.
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 677788999999999999887764211 011366777888889999999988888888889887 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWF 533 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~ 533 (543)
||++.|+......+|+.+.+.+...+.. .+...+|++++++.++..++.+.+.+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 9999999999999999875555554432 1123456777777777666666655443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=67.12 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.+.++.+..+++..++...+.++. .+...+.+.-++.|++|+... ....+++..+|++.
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa--------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE 147 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLG--------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR 147 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH
Confidence 555577888888888888777765 256778888999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVT 487 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~ 487 (543)
|+++.|+++....+|.++++.+.+.+.
T Consensus 148 R~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 148 YQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=71.94 Aligned_cols=172 Identities=13% Similarity=0.031 Sum_probs=95.6
Q ss_pred HHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009129 21 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPS 100 (543)
Q Consensus 21 ~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 100 (543)
..+..+.+.. .+..+.+... .+...+......++..+++++.||+ |||+.++.+...+.++.++++........
T Consensus 312 ~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~~~~~~~~~~~~~~~--- 385 (513)
T KOG0254|consen 312 NYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSICLVILAVVGVFALY--- 385 (513)
T ss_pred ceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHHHHHHHHHHHHHhcc---
Confidence 3333333333 3455555333 4444455666777777789999999 99999999999999999988876431110
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 101 CDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
|...........+....+.......+..|....+.+|.+|.+- |+++.++......+...+-........+
T Consensus 386 ---~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~~~~n~~~~~~v~~~~~~~~~ 456 (513)
T KOG0254|consen 386 ---YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLAVAVNWLWNFLISFFFPFITE 456 (513)
T ss_pred ---CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011112222222333334444455677778999999998 8888776655544433332222222333
Q ss_pred ccccchhhhHHHHHHHHHHH-HHHhcCc
Q 009129 181 NVGWGWGFGIPAVAMAIAVV-FFFSGSR 207 (543)
Q Consensus 181 ~~g~~~~f~i~~~~~~i~~~-~~~~~~~ 207 (543)
..++...|...+....+... ......+
T Consensus 457 ~~~~~~~f~~f~~~~~~~~~~fv~~~~p 484 (513)
T KOG0254|consen 457 ALGIGGTFGYFGGICLLSLIIFVFFFVP 484 (513)
T ss_pred hccccchHHHHHHHHHHHHHHHheEEcc
Confidence 33334455555544444444 3333344
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.086 Score=55.98 Aligned_cols=164 Identities=12% Similarity=0.016 Sum_probs=97.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCc-----hhhhhhHHHHHHHHhhh-hhhhHHHhhhccchhHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGN-----VTASNNVTNWSGTCYIT-PLIGAFLADSYMGRFWTIASF 77 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~-----~~~~~~~~~~~~~~~i~-~~~~G~laD~~~Grk~~l~~~ 77 (543)
++.+...+.-||..+.|+..- -+.|.+..+. ....+.-+...+...+. .++.+++++|+ +|++.+.+.
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~ 80 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV 80 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence 344445555666655555333 2455555532 34555555554444444 78899999999 999999888
Q ss_pred HHHHHHHHHHHHHh--hcccCCCC--CCCCCCC-CCCCc-------hHHHHHHHHHHHHhhccCCCc-chhhhhhcccCC
Q 009129 78 SIIYCLGMTLLTLT--ASVSGLKP--SCDKDAC-HPTGA-------QTAVTFVALYLIALGTGGIKP-CVSSFGADQFDE 144 (543)
Q Consensus 78 ~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~-~~~~~-------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~ 144 (543)
...+..-..+.++. +..+.+.+ .||+... .|.+. +.|...+..+...+-.....+ .-.+++.|.+..
T Consensus 81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~ 160 (472)
T TIGR00769 81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI 160 (472)
T ss_pred HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 77777665555544 11111111 2333111 11111 011111112222222233333 667899999998
Q ss_pred CCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 145 TDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 145 ~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
++ -.|.++++..+.|+|..+++.+..++.
T Consensus 161 ~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 161 DE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 888999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00077 Score=67.74 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=110.8
Q ss_pred HHhHHHHHHHH-hhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 009129 21 YGMSTNLVNYL-QKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMG-RFWTIASFSIIYCLGMTLLTLTASVSGLK 98 (543)
Q Consensus 21 ~~~~~~l~~~l-~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-rk~~l~~~~~~~~i~~~~~~~~~~~~~~~ 98 (543)
|....+...++ .+.+++++.|.|.+.+.-.+...+.+...+...||..| -|-.+..++.++.-..+.+..+.+
T Consensus 277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~----- 351 (451)
T KOG2615|consen 277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART----- 351 (451)
T ss_pred HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc-----
Confidence 33333444444 56799999999999999999999999989999999822 555666666666666666666654
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHh
Q 009129 99 PSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~ 178 (543)
...++++..+-.+..+...++...++....|.++ ||.+.|+......++-.+||+++|.+
T Consensus 352 --------------~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 352 --------------PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred --------------chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhhee
Confidence 5778888899999999999999999999999998 99999999999999999999999987
Q ss_pred hcc
Q 009129 179 QMN 181 (543)
Q Consensus 179 ~~~ 181 (543)
..+
T Consensus 412 ~~W 414 (451)
T KOG2615|consen 412 FSW 414 (451)
T ss_pred EEE
Confidence 653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=57.86 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=85.7
Q ss_pred hhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHH
Q 009129 40 VTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVA 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (543)
..-..-.++......+.+++.+.+.+++ |.|+.+++|.+.+.+-..... .. +.+.++.+
T Consensus 37 ~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~~-------------------~~~~l~~~ 95 (156)
T PF05978_consen 37 GLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-YP-------------------NSYTLYPA 95 (156)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-hh-------------------hHHHHHHH
Confidence 3334445555666777778888899998 999999999998885433332 22 26788899
Q ss_pred HHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHh
Q 009129 120 LYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWI 178 (543)
Q Consensus 120 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~ 178 (543)
-.+.|+|.+..+.+...++.+..++++ |++-.+++....+.+.++|.++.-.+
T Consensus 96 s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 96 SALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877 88888877777777777776655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=69.19 Aligned_cols=122 Identities=7% Similarity=0.021 Sum_probs=96.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcc-
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA- 459 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~- 459 (543)
.+.++.+.+|.+++++|.++++... ......+.+.+.+.++|.++.-|...+++.|+.|++
T Consensus 89 LG~~~tI~lGail~~iGh~~L~~~~------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 89 LGTRRTIVLGAILMAIGHLVLAISS------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccc------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 4556788999999999999888641 024556777888888999999999999999999843
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceee
Q 009129 460 -MRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536 (543)
Q Consensus 460 -~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 536 (543)
.|..+.+++.+.-++|+.+++.+++++.++. ++...|.+.++-+.++++.++...|+.+..
T Consensus 151 prrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred cccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 4667778888888999999999999998643 244668888888888888877777666544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.023 Score=59.95 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccc-hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHH
Q 009129 384 LQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM-TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRS 462 (543)
Q Consensus 384 ~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 462 (543)
++.+..|.++++++-+++..++.. +. ..+++.+..++.|+|.+.. ...-+|+++..-.+.|.
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~----------------~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~ 164 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYV----------------PNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRP 164 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchH
Confidence 566899999999999999766543 22 5677788889999985553 45567888877777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 463 LCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 463 ~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
++++..+....+|.++|+.+-..+...--+ ...|.|. ..-..+...-|+++++.++..++..+..+|..+
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 888887777777777777766655432111 1122221 122234444677788888888777777777544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0063 Score=66.09 Aligned_cols=150 Identities=9% Similarity=0.020 Sum_probs=106.2
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCch---hhhhhHHHHHHHHhhhhhhhHHHhhhccch-hHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNV---TASNNVTNWSGTCYITPLIGAFLADSYMGR-FWTIASFSI 79 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-k~~l~~~~~ 79 (543)
|.....+++.|.....||++..+.|.....-++.|.. +.++....+.++..++..+.|.+.-+. +| |+.++++.+
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~~~ 388 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFGSV 388 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHHHH
Confidence 4455566788888888999888888877766666553 567777788888888999999999887 65 455556766
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 80 IYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 80 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
++.++...++..+. .+....+...++.|+|.|...........-..|+++ .+.+.++
T Consensus 389 ~~ta~~Gama~~~~-----------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~gL 445 (599)
T PF06609_consen 389 LMTAFCGAMAAVRP-----------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTATGL 445 (599)
T ss_pred HHHHHHHHHHHccC-----------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHHHH
Confidence 66655444444321 123334566788899998887777777766777776 8888888
Q ss_pred hhhhHhHHHHHHhHHHHH
Q 009129 160 FYLSINIGALVASSVLVW 177 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~ 177 (543)
....-.+|+.+|..+-.-
T Consensus 446 ~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 446 TGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 877777877777655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.018 Score=62.43 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=84.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
++++..+..++++.+++-+..++. .+.+..++.-++.|++........+.+..|..+++.
T Consensus 145 ~GRk~~~~~~~~~~~i~~~~~a~a--------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~ 204 (521)
T KOG0255|consen 145 FGRKPVLLVSLLLFIIFGILTAFA--------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ 204 (521)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh--------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch
Confidence 444567778888888777666654 477788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLV 525 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~ 525 (543)
|+.+..+ ....+.++.+++....++.. +| .+.+++..+...+.+++
T Consensus 205 R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 205 RGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 9999999 88888889988888888874 34 45566666666666544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0039 Score=66.02 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=117.3
Q ss_pred ccchHHHHHHHHHhHhHHHhHH-HHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhH-HHhhhccchhHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMST-NLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGA-FLADSYMGRFWTIASFSIIY 81 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G-~laD~~~Grk~~l~~~~~~~ 81 (543)
|..+.+++..++....-.+-.. .+..|+..+++++..+.+...+..+....++..+.. .+.-.+ |-|+.+..|+...
T Consensus 240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSE 318 (463)
T ss_pred ccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHH
Confidence 4444445554444333332222 445777788999999999999999999999988887 555555 9999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.+...+.+++.. .++.+...++.++. +...|...++++.+.++++ +|+.+++..
T Consensus 319 ~~~~~~~af~~~-------------------~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is 372 (463)
T KOG2816|consen 319 FLQLLLFAFATE-------------------TWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIIS 372 (463)
T ss_pred HHHHHHHHHhcc-------------------chhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHH
Confidence 999999999854 67777777666555 7778999999999999999 999999999
Q ss_pred hhHhHHHHHHhHHHHHhh
Q 009129 162 LSINIGALVASSVLVWIQ 179 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~ 179 (543)
....+.++++|.+-+.+.
T Consensus 373 ~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHhhhhhHHHHHHHH
Confidence 999999999988776653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.026 Score=54.60 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=72.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.++...+.+|.+...+|+........++ ....+.|.++...++.+.+.............+.+|+ .
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~-------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSGR-------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCc-------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 6777888899999999988776553321 1124667777777788888888777877777889996 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTK 488 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~ 488 (543)
||++.|+.-...++++.+-+.+...+.+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 9999999999999999988877776653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.029 Score=57.94 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=92.3
Q ss_pred HhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 009129 16 ERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVS 95 (543)
Q Consensus 16 ~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~ 95 (543)
.-..+++..+.+-.-+ ..-|+++..+|.+.....++..+++.++|.++||.-.-|+++++......++...+...+..+
T Consensus 278 ~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~ 356 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL 356 (480)
T ss_pred hHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3334444444433222 345677788999999999999999999999999994455666655555555532222222111
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHH
Q 009129 96 GLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL 175 (543)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~ 175 (543)
...+.++..-.+.|.+.-+..|...-+..|..-+.. -+...|+.....++-.++=..+-
T Consensus 357 ---------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~~gq~f~~~~~~~~ 415 (480)
T KOG2563|consen 357 ---------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNLSGQIFGVILVFIM 415 (480)
T ss_pred ---------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEeehhHHHHHHHHHH
Confidence 123455555677788888889999999888776655 34445655555554444445666
Q ss_pred HHhhcccc
Q 009129 176 VWIQMNVG 183 (543)
Q Consensus 176 ~~~~~~~g 183 (543)
+...+..+
T Consensus 416 ~~~~~~~~ 423 (480)
T KOG2563|consen 416 GILAEDLG 423 (480)
T ss_pred HHHhhccC
Confidence 66666555
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.013 Score=46.23 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhc
Q 009129 21 YGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTAS 93 (543)
Q Consensus 21 ~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~ 93 (543)
+...+.+ +.++++.++|.++.|++.+.-.+++.++.+...++.++. .+++.+..+.+...+..+.+++.++
T Consensus 9 FayTplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 9 FAYTPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444 447789999999999999999999999999999999997 8899999999999999999988754
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.014 Score=60.38 Aligned_cols=125 Identities=12% Similarity=0.025 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcc---hH
Q 009129 385 QRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDA---MR 461 (543)
Q Consensus 385 ~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~r 461 (543)
+.+.+|.++..+|.+++...... +..++......+.+.+.++++|.+..-|...++..|+.+++ .|
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-----------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-----------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-----------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 45678889999998886554211 00012234456777888999999999999999999999976 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceee
Q 009129 462 SLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536 (543)
Q Consensus 462 g~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 536 (543)
.+....+....++|..++..+.+++.+. .++...|.+.++.++++++.++...++++++
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 6666777888999999999999988852 2345678888888888887777666666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.056 Score=58.43 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH-HHHHHHH-HH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-SFSIIYC-LG 84 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~-~~~~~~~-i~ 84 (543)
..+....|...++..+.-....-.+..-+|-+..+.+.++++++++..+++.++|+++++. -|+.... ++..+.. ++
T Consensus 17 ~~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~ 95 (521)
T PRK03612 17 ALLLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLS 95 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666667777888999999999999999999999999987554 3332221 1111111 11
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhH
Q 009129 85 MTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSI 164 (543)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 164 (543)
..++...... .......++...++.++..|+..|....+..+... ++ -++..+..|...
T Consensus 96 ~~ll~~~~~~--------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~n 154 (521)
T PRK03612 96 ALILYAAFAF--------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAAD 154 (521)
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHH
Confidence 1111111100 00011223334455677778877776666654322 12 456678888999
Q ss_pred hHHHHHHhHHHHHhhc-ccccchhhhHHHHH-HHHHHHHHHh
Q 009129 165 NIGALVASSVLVWIQM-NVGWGWGFGIPAVA-MAIAVVFFFS 204 (543)
Q Consensus 165 ~lg~~l~~~i~~~~~~-~~g~~~~f~i~~~~-~~i~~~~~~~ 204 (543)
.+|+++|.++.+++.- .+|-.....+.+.+ .+++++.++.
T Consensus 155 tlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 155 YLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887654 56754444443333 3344333333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.82 Score=46.52 Aligned_cols=150 Identities=14% Similarity=0.044 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHh--hhhhhhHHHhh-----hccchhHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCY--ITPLIGAFLAD-----SYMGRFWTIASF 77 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~--i~~~~~G~laD-----~~~Grk~~l~~~ 77 (543)
+.+++++....- -.-+|....+|..++ .-|.|-++.+.. +++.. -.-+++..+.| |+ ||||.-++=
T Consensus 32 ~illLl~LYllQ-GiP~GL~~~iP~lL~-ak~vSyt~~a~f----S~ay~P~sLKllWaPiVDs~y~k~~-GrrksWvvp 104 (510)
T KOG3574|consen 32 SILLLLFLYLLQ-GIPLGLIGAIPLLLQ-AKGVSYTSQAIF----SFAYWPFSLKLLWAPIVDSVYSKRF-GRRKSWVVP 104 (510)
T ss_pred hHHHHHHHHHHc-CCchhHhhhhHHHhc-CCCcchhhhhhh----hhhhhHHHHHHHHHhhhHHHHHHhh-ccccceeee
Confidence 344444444444 344566665555554 456665554433 33332 22356677788 88 999886543
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccccee
Q 009129 78 SIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 157 (543)
Q Consensus 78 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 157 (543)
. -+.+|.++..++...+.... |+. ...+...+....++.-+.++.--.++....-++..+++ .|.+.
T Consensus 105 ~-q~llG~~mllLs~~v~~~~g--~ng----~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------lgyaS 171 (510)
T KOG3574|consen 105 C-QYLLGLFMLLLSYLVDRGLG--GNG----GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------LGYAS 171 (510)
T ss_pred h-HHHHHHHHHHHhhCCCcccc--cCC----CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------cCchh
Confidence 2 23345555555533221111 010 01122223333455667777777888889889988888 88888
Q ss_pred ehhhhhHhHHHHHHhHH
Q 009129 158 NWFYLSINIGALVASSV 174 (543)
Q Consensus 158 ~~~~~~~~lg~~l~~~i 174 (543)
....++.+.|.++|..+
T Consensus 172 T~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 172 TCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHhhhHHhhcce
Confidence 88888888888888544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.27 Score=54.71 Aligned_cols=325 Identities=11% Similarity=-0.004 Sum_probs=184.0
Q ss_pred HHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 009129 28 VNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACH 107 (543)
Q Consensus 28 ~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 107 (543)
.++..--.+...........++.....+..+.....+|-.-|+-..+..-....++..+...+... +. .
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a----------~ 76 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA----------I 76 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc----------C
Confidence 344433344445566677788888899999999999999955556666666666666776766643 10 1
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccc-cch
Q 009129 108 PTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG-WGW 186 (543)
Q Consensus 108 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g-~~~ 186 (543)
|...+......+.+...++.++..++-+.+.+++.+..++ .++.+..+++++..+.+.+. .+++..+..... +..
T Consensus 77 ~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~ 152 (654)
T TIGR00926 77 PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVG 152 (654)
T ss_pred cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 1112233455677778999999999999999999987652 23446888899888877664 567777766543 322
Q ss_pred ------hhhHHH-HHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcc
Q 009129 187 ------GFGIPA-VAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRK 259 (543)
Q Consensus 187 ------~f~i~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (543)
+|.... +..++.++.+..+....+.-++++.......++........+ .+
T Consensus 153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~-----------------------~~ 209 (654)
T TIGR00926 153 CFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR-----------------------KR 209 (654)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------------Hh
Confidence 233333 334444445555444333333322211111111111000000 00
Q ss_pred cccCcccchhhhhhhhhcccccCCCCCCCcccchh--hHHHHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCC
Q 009129 260 LESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVT--QVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHM 337 (543)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (543)
. .... .. ....|.+.... ..++.+...+.+.+......++..+.++......+..++++..
T Consensus 210 ~-~~~~------------~~----~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 210 F-STRS------------EH----WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD 272 (654)
T ss_pred h-ccCC------------cc----cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence 0 0000 00 00112111111 1234566667777777777777766663333333333344442
Q ss_pred CCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 009129 338 GPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNI 411 (543)
Q Consensus 338 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~ 411 (543)
+ .+...+.....++.+-.++..++...+..++.++..++ ..+.+++.-+.+.+.++.+.+......+.+.
T Consensus 273 ~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 273 G-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred C-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33233334556667777777788887777888887554 5567778888888888888888776654443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0023 Score=69.37 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHH-HHhhhhhhhHHHhhhc-cchhHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSG-TCYITPLIGAFLADSY-MGRFWTIASFSIIYCL 83 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~-~Grk~~l~~~~~~~~i 83 (543)
.+...+...++.+..-|+.+++|.|++.+++.+.++++.+.++..+ +..++.+++|++..|+ ++.|+++.++.++..+
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999999988665 6778899999999988 4466666666655555
Q ss_pred HHHHH---HH--hhcccCCC---------------C---CCCC-----------CCCCCC-CchHHHHHHHHHHHHhhcc
Q 009129 84 GMTLL---TL--TASVSGLK---------------P---SCDK-----------DACHPT-GAQTAVTFVALYLIALGTG 128 (543)
Q Consensus 84 ~~~~~---~~--~~~~~~~~---------------~---~~~~-----------~~~~~~-~~~~~~~~~~~~l~g~g~g 128 (543)
+.+.. .+ ..+.+..+ . .|+. ..|... ......+++..++..+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 44431 00 01100000 0 1111 111112 2345566666666555556
Q ss_pred CCCcchhhhhhcccCCCCccccccccceeehhhhhHh-HHHHHHhHHHHHhhcc
Q 009129 129 GIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN-IGALVASSVLVWIQMN 181 (543)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lg~~l~~~i~~~~~~~ 181 (543)
..........-+..|+++ |+.+.|+...... +|.+=||++-|.+.+.
T Consensus 467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------------
T ss_pred hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 656555666778888888 9999999988764 7888899999888774
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.6 Score=42.81 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCC-----------
Q 009129 427 IFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGK----------- 495 (543)
Q Consensus 427 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~----------- 495 (543)
...++...++..+..-..+....++-+.++.+..-|++|.+.|...++|+-.-..+.-.+.|......=
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~C~~~~t~~~~c~ 484 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVATCTVPGTNSFSCS 484 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccccCCCCCCCceec
Confidence 344555677777777777889999999999999999999999999999988877777777765442100
Q ss_pred ----ccccCCCCC-cc--hhHHHHHHHHHHHHHHHHHHH-HHHhhce
Q 009129 496 ----LGWIPDNLN-RG--HLDYFYWLLTILSVLNFLVYL-WIAKWFT 534 (543)
Q Consensus 496 ----~~w~~~~~~-~~--~~~~~f~~~~~~~~l~~~~~~-~~~~~~~ 534 (543)
.+.|.++.+ .. ..+++|+...++.+++++.++ ++.|+.+
T Consensus 485 ~~~~k~~Ct~~~GG~C~i~rDGYYi~~~lCvviGi~~~~~~i~~~~~ 531 (544)
T PF13000_consen 485 SDAEKEQCTKAGGGTCVIIRDGYYITNILCVVIGIVLWFLFIRPKAR 531 (544)
T ss_pred cHHHHHHHhhCCCCeEEEEeccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 11 155677777777777766554 4444433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.19 Score=55.64 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC---------CCc
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKN---------GKL 496 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~---------~~~ 496 (543)
.+..++...++.|+|....+|...+|+.|.+.++.-..+.|+......+|-++|-.+.+.+....... .+.
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 44566677899999999999999999999999999999999999999999999999888887543321 111
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 497 GWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 497 ~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
.| .|..+.-|.+.+.+.++..+.++++.|+.++
T Consensus 316 rW------IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 316 RW------IGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred ch------hhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 22 1334445778888888888888887776654
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.88 Score=40.65 Aligned_cols=62 Identities=6% Similarity=0.125 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVT 487 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~ 487 (543)
..+.+++.-++.|++.+...+..-.++.+...++.|++-.+++-.....+.++|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999988888888888877665554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.44 Score=50.10 Aligned_cols=143 Identities=9% Similarity=0.023 Sum_probs=108.8
Q ss_pred hHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccC
Q 009129 17 RLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSG 96 (543)
Q Consensus 17 ~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~ 96 (543)
.++--+.-+.+..|+..+ |+++...|..-+.-.+....+.....++-+|+ |..|.=+++.....++...+..+-..+.
T Consensus 271 Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~ 348 (432)
T PF06963_consen 271 YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG 348 (432)
T ss_pred HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444556677888766 99999999999999999999999999999998 9999999998887776666655433221
Q ss_pred CCCCCCCCCCCC-CCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHH
Q 009129 97 LKPSCDKDACHP-TGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVL 175 (543)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~ 175 (543)
- | +..+...++.+..+.=+|.=++.-+..-++.|..|+++ ||...+......++--++-..++
T Consensus 349 ~----------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 349 S----------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred C----------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12345666666666666777778888999999999888 99999999999998888876554
Q ss_pred HH
Q 009129 176 VW 177 (543)
Q Consensus 176 ~~ 177 (543)
-.
T Consensus 413 ii 414 (432)
T PF06963_consen 413 II 414 (432)
T ss_pred hc
Confidence 43
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.54 Score=49.72 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhccc---CcchHH
Q 009129 386 RMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQA---PDAMRS 462 (543)
Q Consensus 386 ~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg 462 (543)
=+.+|.++.+++...++..... ..+.......+++..+|.++.....-+...|.. |.+ ||
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~~----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPAS----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcccc----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 3566666666666666554311 123344555667788888888888887877776 344 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 463 LCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 463 ~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
..++....+..+|++++..+.|.+.+..+ ....|.+.+.+..+..+..+++.+|
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 88888888999999999999988876322 1223566666666666565666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.31 Score=47.06 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=92.2
Q ss_pred hhhhHHHHHHHHhhhhhhhHHHhhhccchh--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHH
Q 009129 42 ASNNVTNWSGTCYITPLIGAFLADSYMGRF--WTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVA 119 (543)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~G~laD~~~Grk--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (543)
-|.+.+.+++++.+++-+...++.|- ..| ..+.+..+ ..++.+.++..++.. .|+..++..-+++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~-vs~a~l~Lpilt~~v-----------sP~kes~~~s~i~ 350 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFL-VSIAALLLPILTSSV-----------SPSKESPSESLIG 350 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHHHHhcc-----------CCCcCCchHHHHH
Confidence 48888899999888887777776665 322 22332222 223333444333311 1233456666777
Q ss_pred HHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHH
Q 009129 120 LYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAV 199 (543)
Q Consensus 120 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~ 199 (543)
-.+.-.+.|.++|..+-+=++.+|++. |...++++....|+-..++-...-.-....+-|..|.++.+....+.
T Consensus 351 F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 351 FCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHH
Confidence 778888999999999999999999999 99999999998887655542211111122457788888887666554
Q ss_pred HH
Q 009129 200 VF 201 (543)
Q Consensus 200 ~~ 201 (543)
+.
T Consensus 425 i~ 426 (454)
T KOG4332|consen 425 IL 426 (454)
T ss_pred HH
Confidence 43
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.39 E-value=17 Score=38.55 Aligned_cols=157 Identities=16% Similarity=0.052 Sum_probs=93.3
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCC---chhhhhhHHHHHH-HHhhhhhhhHHHhhhccchhHHHHHHHHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQG---NVTASNNVTNWSG-TCYITPLIGAFLADSYMGRFWTIASFSII 80 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s---~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grk~~l~~~~~~ 80 (543)
+.+.+.+.-+|..+.|+.+- -+.|.+..+ +.....+-+...+ .+.+..++-+++.+++ -|.+++..-...
T Consensus 28 kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~~~ 101 (509)
T COG3202 28 KFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIILGF 101 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHHHH
Confidence 33444555555544444222 233444443 3334444444444 5777888999999998 999999888888
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCCC-------------C--c-----hHHHHHHHHHHHHhhccCCCc-chhhhhh
Q 009129 81 YCLGMTLLTLTASVSGLKPSCDKDACHPT-------------G--A-----QTAVTFVALYLIALGTGGIKP-CVSSFGA 139 (543)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~-----~~~~~~~~~~l~g~g~g~~~~-~~~~~~~ 139 (543)
+....++.++.-. |.||- .||. + + +-|...+..+..-+=.....+ .-..++.
T Consensus 102 F~~fF~LFa~Vi~-----P~~~~--~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN 174 (509)
T COG3202 102 FLGFFALFAFVIY-----PYKDI--LHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN 174 (509)
T ss_pred HHHHHHHHHHHHh-----ccccc--cCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777776632 23333 2331 1 0 001111111111111111111 3456778
Q ss_pred cccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 140 DQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 140 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
|++..+| -.|.++.++...|++..++..+..++.+
T Consensus 175 eitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 175 EITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877 8889999999999999999988888765
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.81 E-value=25 Score=37.27 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
+-++.++.+++.|+..+........+..+..+++.|..+..+..++..+|-.+|..+.-.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666789999999999999999999999999999999999998888888887765433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=89.27 E-value=34 Score=36.57 Aligned_cols=58 Identities=12% Similarity=-0.083 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhh-hhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 009129 431 VPQYFIVGCAEVFTFI-GQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTK 488 (543)
Q Consensus 431 ~~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~ 488 (543)
..+++...+-...+.+ .-+.+..|....+...+-.++.....++|.++++.+...+.+
T Consensus 132 ~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 132 ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444 789999999999999999999999999999999999888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.7 Score=45.31 Aligned_cols=157 Identities=10% Similarity=-0.037 Sum_probs=93.6
Q ss_pred cccchHHHHHHHHHhHhHHHhHHHHHHHHhhh-cCCCch-----h-----------hhhhHHHHHHHHhhhhhhhHHHhh
Q 009129 3 LYSRPLISGNECCERLAYYGMSTNLVNYLQKQ-LNQGNV-----T-----------ASNNVTNWSGTCYITPLIGAFLAD 65 (543)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~s~~-----~-----------~~~~~~~~~~~~~i~~~~~G~laD 65 (543)
+|.++-+++.+++..++.+...-+...++-++ ++=++. + -.|-+.+.++...+.+...-++.|
T Consensus 278 pr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~ 357 (498)
T KOG0637|consen 278 PRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSR 357 (498)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999888887777777776443 221111 1 133355567778888999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHh--------------------
Q 009129 66 SYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIAL-------------------- 125 (543)
Q Consensus 66 ~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-------------------- 125 (543)
|+ |-|+.+..+...+.++..+..+..+ ......-+-..|+
T Consensus 358 ~~-g~r~~y~~~~~~f~~~~~~~gl~~~-------------------~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g 417 (498)
T KOG0637|consen 358 KF-GTRKRYWGGVNAFGLATGLAGLVLN-------------------TYVVLSHRSTAGILSSPLLTVPYGALALYAILG 417 (498)
T ss_pred hc-CcceEEeehhHHHHHHHHHHhhhhh-------------------HHHHHHHHhhcceeecchhcccHHHHHHHHHhC
Confidence 99 8666666666656666666665432 2222222333332
Q ss_pred -hccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcccc
Q 009129 126 -GTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNVG 183 (543)
Q Consensus 126 -g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~g 183 (543)
-.+....+..+..+.... +. ..++|...++.+..+.+..++.....|.+.+.+|
T Consensus 418 ~~~a~t~~~pf~~~s~~~~-~s---g~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 418 IPLAITFSIPFALASIEIG-NS---GLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred Ccccccccccccccccccc-Cc---cCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 222222222222221111 11 1125677777888888878777777777766665
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.52 E-value=4.2 Score=42.98 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHhhhhhhhHHH---hhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC---C---CCchHHHHHHHH
Q 009129 50 SGTCYITPLIGAFL---ADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACH---P---TGAQTAVTFVAL 120 (543)
Q Consensus 50 ~~~~~i~~~~~G~l---aD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~ 120 (543)
..+..++....+.+ .+++ ||++.+.++..+..++.++.-+.... |.|..| + ...+.....+.-
T Consensus 289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~~p~-------dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLSFPN-------DAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhccccc-------cCCCCCCcccccccccchhHHHHHH
Confidence 34444445555555 4666 99999999999888877777665321 222111 1 222344555666
Q ss_pred HHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHH
Q 009129 121 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV 176 (543)
Q Consensus 121 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~ 176 (543)
++.|++-++.....+.++++..|+ + |..+++++-.-..++..++-....
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 889999999999999999999954 4 677777777766666665543333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.51 E-value=8.8 Score=41.17 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=72.3
Q ss_pred HHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHh--hcccCCCC--CCCCCCC-CCCCch-------HHHHHHH
Q 009129 52 TCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLT--ASVSGLKP--SCDKDAC-HPTGAQ-------TAVTFVA 119 (543)
Q Consensus 52 ~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~-~~~~~~-------~~~~~~~ 119 (543)
.+.+...+-.+++|++ +|.+++.+....+..-..+.++. +..+.+.+ .||++.. .|.+-. .|.+.+.
T Consensus 71 ~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF 149 (491)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 4455667789999998 99999987777666655444443 21111111 2333111 111111 1111111
Q ss_pred HHHHHhhccCCCc-chhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhc
Q 009129 120 LYLIALGTGGIKP-CVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180 (543)
Q Consensus 120 ~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~ 180 (543)
.++.-+=.....+ .-..++.|.++.+| -.+.++++..+.|+|.+++..+..++.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111112122 34788899998888 8889999999999999999888888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=87.74 E-value=13 Score=36.11 Aligned_cols=60 Identities=17% Similarity=0.360 Sum_probs=40.5
Q ss_pred ccceeehhhhhHhHHHHHHhHH--HH-Hhh--cccccchhhhHHHHHHHHHHHHHHhcCcceecc
Q 009129 153 KSSFFNWFYLSINIGALVASSV--LV-WIQ--MNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ 212 (543)
Q Consensus 153 r~~~~~~~~~~~~lg~~l~~~i--~~-~~~--~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 212 (543)
|+.......++.++|+++.-+. .+ -.. ..-.|++.+.+.+.+.++-++++....++.+..
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~ 68 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIY 68 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 7788888888999999887332 11 111 122499999888888777777777766655443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.6 Score=45.20 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhh
Q 009129 113 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQ 179 (543)
Q Consensus 113 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~ 179 (543)
.+..++..+..|+..|....+....+.|..|+++ |..+++...++-++|..++..++-++.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666677788999999999999999999998887 999999999999999999987776654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.18 E-value=21 Score=35.59 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIV 486 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~ 486 (543)
+++.+....+.=|+-.+....-.+--+.+..+++.|-.+++.....-.+|..+++.+.-.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3343333344444444444445555566667788899999999888888888777665433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.58 E-value=4.9 Score=44.03 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=96.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----hccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhccc
Q 009129 382 TQLQRMGIGLLISIFSMVAAGILEVVRLNIV-----KRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQA 456 (543)
Q Consensus 382 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~ 456 (543)
++.+.+.++.++..+++........-...-+ ..++..+++++......+...+.+.++|.+..-|...++-+++.
T Consensus 102 gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf 181 (571)
T KOG1237|consen 102 GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF 181 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence 3446677777777777655544322211111 12223344455555666677778888898898999999999999
Q ss_pred Cc----chHH--HHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009129 457 PD----AMRS--LCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIA 530 (543)
Q Consensus 457 P~----~~rg--~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ 530 (543)
++ +.+. .-+..+.+..++|..++..+..++.++. +| ..-|.+.++.++++.++++...
T Consensus 182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~------~w----------~lgf~i~~~~~~lai~iF~~g~ 245 (571)
T KOG1237|consen 182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV------GW----------KLGFGIPTVLNALAILIFLPGF 245 (571)
T ss_pred CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc------cc----------eeeccHHHHHHHHHHHHHHcCc
Confidence 82 2222 4556677888899999988888886532 34 2457788999999998988888
Q ss_pred hhceeecccC
Q 009129 531 KWFTYKKATG 540 (543)
Q Consensus 531 ~~~~~~~~~~ 540 (543)
+.+++++.++
T Consensus 246 ~~y~~~~p~g 255 (571)
T KOG1237|consen 246 PFYRYKKPRG 255 (571)
T ss_pred eeEEeeCCCC
Confidence 8888776443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.90 E-value=53 Score=34.18 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 009129 425 MTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLL 482 (543)
Q Consensus 425 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i 482 (543)
.+-+|.+....+.|+..+-.......+.-+..|++.+-.+..+..++...|-..|..+
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445677778899999988888999999999999988888888777766666666544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.85 E-value=51 Score=33.60 Aligned_cols=93 Identities=10% Similarity=-0.097 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh-----hhcccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhccCCCcccc
Q 009129 426 TIFWQVPQYFIVGCAEVFTFIGQLEF-----FYDQAPDAMRSLCSALSL-TTVAVGNYLSTLLVTIVTKVTTKNGKLGWI 499 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g~~~~~~~~~~~-----~~~~~P~~~rg~~~g~~~-~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~ 499 (543)
....+++.-++.|++..+.+..--+. -..-.|++..+...+... ..+.+-.++++.+...+.+..+.++
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~----- 194 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP----- 194 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC-----
Confidence 56667777888888877777543322 223456666555555444 3344555555555555555443221
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 500 PDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 500 ~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
-..|.....+..++.++.....+|
T Consensus 195 ---------vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 195 ---------VAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred ---------cchHHHHHHHHHHHHHHHHhcccc
Confidence 123566555666665554433333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 543 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-32 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 3e-09 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 545 bits (1407), Expect = 0.0
Identities = 127/540 (23%), Positives = 216/540 (40%), Gaps = 55/540 (10%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQG------NVTASNNVTNWSGTCYITPLIG 60
P I +E CER ++YGM L +L L A + ++ Y PL+G
Sbjct: 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLG 74
Query: 61 AFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVAL 120
++AD + G++ TI S+IYC+G L + + L
Sbjct: 75 GWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------SVQGFYTGL 116
Query: 121 YLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQM 180
+LIALG+GGIKP VSSF DQFD+++ F+ FY +IN G+ AS + +
Sbjct: 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMPLLLK 173
Query: 181 NVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPAD 240
N G FGIP V M +A VFF+ G + Y P + VI ++ V +
Sbjct: 174 NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK-VEGKGN 232
Query: 241 KSLLYETADEECNIQGSRKLESTSKFKFFDKAAVET----QTDRVKGSADPWRLCTVTQV 296
L+ + + A V + V
Sbjct: 233 IGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAV 292
Query: 297 EELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSV 356
+ +++++R+L ++A F +++ Q ++ ++LQ N M + A + + L V
Sbjct: 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QWFEPAMMQALNPLLV 348
Query: 357 IFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNN 416
+ P + V+ P ++ T L++MG G+ I+ S + G ++
Sbjct: 349 MLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQ----------- 394
Query: 417 YYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGN 476
++IFWQ+ Y ++ EV LEF Y QAP AM+ + +V VGN
Sbjct: 395 LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN 454
Query: 477 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536
L V T + ++ F++ ++L +V+ A+ + +
Sbjct: 455 LWVLLANVSVKSPTVTE---QIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQMQ 509
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-29
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQG-----NVTASNNVTNWSGTCYITPLIGA 61
+ E ER +YYGM L+ Y+ ++ G TA++ + ++ Y++ IG
Sbjct: 16 STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGG 75
Query: 62 FLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALY 121
F+AD +G + ++ LG +L L S L F ++
Sbjct: 76 FVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL-------------------FGSII 116
Query: 122 LIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN 181
LI +GTG +KP VS+ +DE D ++ + F+ F IN+GA +A ++ Q
Sbjct: 117 LIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172
Query: 182 VGWGWGFGIPAVAMAIAVVFFFSGSRLY 209
G+ F + A+ M I ++ ++ G +
Sbjct: 173 AGYHVAFSLAAIGMFIGLLVYYFGGKKT 200
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 33/239 (13%), Positives = 77/239 (32%), Gaps = 44/239 (18%)
Query: 297 EELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSV 356
E ++ +P++ + ++F + Q S + P + + L +
Sbjct: 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS----SWFPVSWFQSLNPLFI 332
Query: 357 IFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLI---SIFSMVAAGILEVVRLNIVK 413
+ + P ++ + + +GL+ S M G L
Sbjct: 333 MLYTP----FFAWLWTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALYG------- 379
Query: 414 RNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA 473
+ ++ W V + +V E+ L AP A S ++ + +
Sbjct: 380 -------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432
Query: 474 VGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532
VG+ L+ LVT+ + ++ + SV+ +V ++++K
Sbjct: 433 VGSALNAQLVTLYNAKSEVA-----------------YFSYFGLGSVVLGIVLVFLSKR 474
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.37 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.29 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.18 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.75 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.26 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=292.12 Aligned_cols=479 Identities=27% Similarity=0.446 Sum_probs=292.3
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcC------CCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQLN------QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA 75 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~ 75 (543)
++|..+.+++..++..+++|++.+.++.|+++++| .|..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46778889999999999999999999999999999 999999999999999999999999999999669999999
Q ss_pred HHHHHHHHHHHHHHHhh-cccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCcccccccc
Q 009129 76 SFSIIYCLGMTLLTLTA-SVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKS 154 (543)
Q Consensus 76 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 154 (543)
.+.++..++.++++++. + .+.++++|++.|++.+...|...++++|++|+++ |+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~ 144 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHS-------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KS 144 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSC-------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TT
T ss_pred HHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hH
Confidence 99999999999998875 4 7889999999999999999999999999999988 76
Q ss_pred ce---eehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHh
Q 009129 155 SF---FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFR 231 (543)
Q Consensus 155 ~~---~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (543)
++ +++.+...++|..++|.+++++.+..||++.|++.++..+++.+.+....++.+.+++++++..+..+.+....+
T Consensus 145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh
Confidence 54 455889999999999999999998889999999988877766666555444433333322222221122111122
Q ss_pred hcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhh----hhhcccccCCCCCCCc-------ccchhhHHHHH
Q 009129 232 KSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAA----VETQTDRVKGSADPWR-------LCTVTQVEELK 300 (543)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 300 (543)
++..+ +++.....+..+........+ +.+......... ...+.. ...+|+ .+..+..+++|
T Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 225 TKVEG-KGNIGLVLALIGGVSAAYALV---NIPTLGIVAGLCCAMVLVMGFV----GAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp --CTT-HHHHHHHHHHHHHHHHHHTGG---GTTTTCSSHHHHHHHHHHHHHH----HTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred hhhcc-cCccchhhhhhhhhhhhhhhc---ccchhhhhhhhhhhhhhhhccc----ccchhhHHhhhhccccHhHHHHHH
Confidence 11100 000000000000000000000 000000000000 000000 000110 00001112233
Q ss_pred HHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCC
Q 009129 301 AIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERG 380 (543)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~ 380 (543)
+.+....+......++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.+++..+..+|..++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 369 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK--- 369 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---
Confidence 333333444444444444555444333222222111 11 35667777788888888999988766666665444
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcch
Q 009129 381 FTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAM 460 (543)
Q Consensus 381 ~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 460 (543)
.+..+.+..|.++.+++++........ .+.+.+.+.+++++.+++.+++++...|..++++.|.+|++.
T Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 370 LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp -CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 556667788888888887766543110 000112455667778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeec
Q 009129 461 RSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK 537 (543)
Q Consensus 461 rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~ 537 (543)
||+++|+.++...+|+.+++.+.+.+.+..+ .+|.++ +. +...+.|++.+++++++.+++++..+++++++
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999998875321 123211 00 11123377778888888777777766665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=285.05 Aligned_cols=444 Identities=19% Similarity=0.266 Sum_probs=288.7
Q ss_pred CcccchHHHHHHHHHhHhHHHhHHHHHHHHhhh-----cCCCchhhhhhHHHHHHHHhhhhhhhHHHhhh-ccchhHHHH
Q 009129 2 PLYSRPLISGNECCERLAYYGMSTNLVNYLQKQ-----LNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWTIA 75 (543)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grk~~l~ 75 (543)
|+|..+.+++..++..+++|++.++++.|++++ +|.|..+.+++.+.+.++..++++++|+++|| + |||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~ 89 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVF 89 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHH
Confidence 467788889999999999999999999999988 99999999999999999999999999999999 8 9999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccc
Q 009129 76 SFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSS 155 (543)
Q Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 155 (543)
.+.++..++.++++++++ .+.++++|+++|+|.+...|+..++++|++|++++. |+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~ 146 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG-------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDA 146 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS-------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHH
T ss_pred HHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----cee
Confidence 999999999999988754 778899999999999999999999999999987632 667
Q ss_pred eeehhhhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceec---cCCCC-ChHHHHHHHH-----
Q 009129 156 FFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRI---QKPGG-SPLTRIMQVI----- 226 (543)
Q Consensus 156 ~~~~~~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~----- 226 (543)
++++++...++|..++|.+++++.+..|||++|++.++..+++++.+....++... ++++. .+..+..+..
T Consensus 147 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 226 (491)
T 4aps_A 147 GFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSL 226 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCC
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHH
Confidence 88889999999999999999999998999999999887766666555443332211 11111 1111111100
Q ss_pred ---------HHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHH
Q 009129 227 ---------VASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVE 297 (543)
Q Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (543)
.........+ .+++....... ........... .|+.... ...
T Consensus 227 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~--------~~~~~~~-~~~ 277 (491)
T 4aps_A 227 AVAGFIAIIVVMNLVGWNS-LPAYINLLTIV-------------------AIAIPVFYFAW--------MISSVKV-TST 277 (491)
T ss_dssp CCHHHHHHHHHHHHHSSCC-TTHHHHHHHHH-------------------HHHHHHHHHHH--------HC---------
T ss_pred HHHHHHHHHHHHHhccCcc-cccchhhhhHH-------------------HHHHHHHHHHH--------Hhhcccc-cHH
Confidence 0000000000 00000000000 00000000000 0000000 001
Q ss_pred HHHHHHHHHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCC
Q 009129 298 ELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGH 377 (543)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~ 377 (543)
++++......+......++..+.+....+..+.. ...+ ......+.+.....+..++..++.+++ .+|.++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r 349 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAA---ERVD-SSWFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKN 349 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHH---HSCC-CSSSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH---HHhc-cCccCHHHHhccchHHHHHHHHHHHHH----HHHHhcc
Confidence 2222222233333333333443333332111111 1111 001345556666667777777777664 4444333
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccC
Q 009129 378 ERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAP 457 (543)
Q Consensus 378 ~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P 457 (543)
+ .....++..|.++.++++......... .+.+.+.+.++.++.+++.+++.+...|..++++.|..|
T Consensus 350 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 350 Q--PSSPTKFAVGLMFAGLSFLLMAIPGAL-----------YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTHHHHHH-----------CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred C--CCchHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 1 344566778888888888777655322 111123466677788899999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceee
Q 009129 458 DAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYK 536 (543)
Q Consensus 458 ~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 536 (543)
++.||+++|+.++...+|+.+++.+.+.+.+. ++...|..+++++++..++.++..++.+++
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877641 223457777888888877777766666554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=261.43 Aligned_cols=407 Identities=13% Similarity=0.093 Sum_probs=233.2
Q ss_pred chhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC--CCchHHHH
Q 009129 39 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHP--TGAQTAVT 116 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 116 (543)
..+.|++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........ .....+ ...+...+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN---PDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---SSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---chhHHHHHHhhhHHHH
Confidence 45678899999999999999999999999 9999999999999999999986421000000 000000 11348899
Q ss_pred HHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhcc--------cccchhh
Q 009129 117 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--------VGWGWGF 188 (543)
Q Consensus 117 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~--------~g~~~~f 188 (543)
+++|+++|+|.|+..+..+++++|..|+++ |++..++.+....+|..+++.++...... .+||+.+
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF 203 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence 999999999999999999999999999998 99999999999999999998887766432 2466665
Q ss_pred hHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccch
Q 009129 189 GIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKF 268 (543)
Q Consensus 189 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (543)
.+..+..++.++... ..||+|+++..+++.|++.+..++....+....
T Consensus 204 ~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 204 ASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 555443333322211 145666666665555544443322211110000
Q ss_pred h--hhhhhhhcccccCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccCh
Q 009129 269 F--DKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIR-LLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPS 345 (543)
Q Consensus 269 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (543)
. +.......... ... .......++... .......+.........+.+ ......+ ......
T Consensus 252 ~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~ 314 (491)
T 4gc0_A 252 AVQEIKHSLDHGRK----TGG-----RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP-------EVFKTLG-ASTDIA 314 (491)
T ss_dssp HHHHHHHHHHHHHH----HTT-----HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH-------HHHHHSS-CCHHHH
T ss_pred HHHHHHHHHHhhhh----hhh-----HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcch-------HHHHhcC-CCccch
Confidence 0 00000000000 000 000000011111 11111111100000000000 0011111 000111
Q ss_pred hhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccc
Q 009129 346 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 425 (543)
Q Consensus 346 ~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (543)
........+..++...+. ..+.+|. ++++.+..+....+++.+..+..... ..
T Consensus 315 ~~~~~~~~~~~~~~~~~~----~~l~dr~-------Grr~~~~~~~~~~~~~~~~l~~~~~~----------------~~ 367 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLA----IMTVDKF-------GRKPLQIIGALGMAIGMFSLGTAFYT----------------QA 367 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHHT----------------TC
T ss_pred hhHHHHHHHHHHHHHHHH----HHHHHhh-------cCcchhccchHHHHHHHHHHHHHHhc----------------cc
Confidence 111122222222222222 2345553 33466677777777777666544321 01
Q ss_pred hhHHHHHHHHHHHHH-HHHhhhhhhHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCccccCCCCC
Q 009129 426 TIFWQVPQYFIVGCA-EVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLN 504 (543)
Q Consensus 426 ~~~~l~~~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~~~~~~~w~~~~~~ 504 (543)
..+..+...++...+ .....|..+.+..|.+|.+.|++++|+.+..+++++++++.+.|.+.+......
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~---------- 437 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA---------- 437 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 122222222222222 233447888999999999999999999999999999999999988754211000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhceeecccCC
Q 009129 505 RGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 541 (543)
Q Consensus 505 ~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 541 (543)
..+....|++++++++++.++.+++.||+|+|+.||.
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence 0112245788899999999999999999999988764
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=250.66 Aligned_cols=398 Identities=11% Similarity=-0.005 Sum_probs=250.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
+....+++..+...+..+.+.+.++. +.+++ .|..+.+++.+++.++..++.++.|+++||+ |||++++.+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPY-LVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHH-TTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHH
Confidence 33444555556665555555555555 44567 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHH----hhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh
Q 009129 84 GMTLLTL----TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 159 (543)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (543)
+.+++++ +.+ .+.++++|+++|++.+...+...++++|.+|+++ |++++++
T Consensus 105 ~~~~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 159 (451)
T 1pw4_A 105 VMLFMGFVPWATSS-------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 159 (451)
T ss_dssp HHHHHHHCHHHHSS-------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHH
T ss_pred HHHHHHhhhhcccc-------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHH
Confidence 9999988 644 7788999999999999999999999999999888 9999999
Q ss_pred hhhhHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccC
Q 009129 160 FYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVP 238 (543)
Q Consensus 160 ~~~~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
.+...++|..++|.+++++.+..| ||+.|++.++..++..++.....++.+......+. +
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------ 220 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------------ 220 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h------------------
Confidence 999999999999999999888888 99999998877666555444433332211100000 0
Q ss_pred CcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHH-HHHHHhHHHHh
Q 009129 239 ADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLL-PVWASGIVFAT 317 (543)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 317 (543)
+.. ++++++... + ..+ ..+++.....+....+.+.... ...........
T Consensus 221 ~~~-----~~~~~~~~~---~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
T 1pw4_A 221 EYK-----NDYPDDYNE---K--AEQ--------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 270 (451)
T ss_dssp TTC-----CC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-----ccccccchh---h--hhc--------------------ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 000 000000000 0 000 0000000000000111222111 11111111111
Q ss_pred hccCcceEEEEecccccCCCCCCcccChh---hhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHH
Q 009129 318 VYSQMSTMFVLQGNTMDQHMGPNFKIPSA---SLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLIS 394 (543)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 394 (543)
.....+. + .....+ .+.. .+.....+..++..++..+ +.+|..+ ++++.+..+.++.
T Consensus 271 ~~~~~~~-~------~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 271 ILDWSPT-Y------LKEVKH----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHH-H------BTTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHH
T ss_pred HHHHHHH-H------HHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHH
Confidence 1111111 1 111111 2222 2223333333344433333 4454200 3345555555554
Q ss_pred H-HHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHHHHHHH
Q 009129 395 I-FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVA 473 (543)
Q Consensus 395 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 473 (543)
. ++.+.+.... ..+.+......++.+++.....+..+++..|..|++.||++.|+.+....
T Consensus 331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 331 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4 4444433210 12445566667778888888888889999999999999999999999999
Q ss_pred H-HHHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009129 474 V-GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 532 (543)
Q Consensus 474 i-g~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~ 532 (543)
+ |+.+++.+.+.+.+.. ++...|++.+++.+++.++.++..++
T Consensus 393 ~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 9999999999998632 23456777788887777766665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=230.19 Aligned_cols=348 Identities=12% Similarity=0.076 Sum_probs=226.0
Q ss_pred chHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHH
Q 009129 6 RPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGM 85 (543)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~ 85 (543)
...+++..+...+....+. .+..++++++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLND-ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 3344445555555555444 444557789999999999999999999999999999999999 99999999999999999
Q ss_pred HHH---HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 86 TLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 86 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
+++ ..+++ .+.++++|++.|+|.+...+...++++|.+|+++ |++++++.+.
T Consensus 106 ~~~~~~~~~~~-------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 160 (438)
T 3o7q_A 106 ALFWPAAEIMN-------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQT 160 (438)
T ss_dssp HHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHH
T ss_pred HHHHhcccccc-------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHH
Confidence 998 55543 8899999999999999999999999999999998 9999999999
Q ss_pred hHhHHHHHHhHHHHHhh-cccc-------------------------cchhhhHHHHHHHHHHHHHHhcC-cceeccCCC
Q 009129 163 SINIGALVASSVLVWIQ-MNVG-------------------------WGWGFGIPAVAMAIAVVFFFSGS-RLYRIQKPG 215 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~~-~~~~~~~~~ 215 (543)
..++|..++|.+++++. +..+ ||+.|++.++..++..+.+...+ ++.+.++++
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 240 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS 240 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 99999999999999988 5554 89999877765554444433322 111100000
Q ss_pred CChHHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhh
Q 009129 216 GSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQ 295 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (543)
+++. + ...+. ++ +
T Consensus 241 ~~~~--------------------------------------------~--~~~~~----------------~~-----~ 253 (438)
T 3o7q_A 241 DAKQ--------------------------------------------G--SFSAS----------------LS-----R 253 (438)
T ss_dssp CSST--------------------------------------------T--SHHHH----------------HH-----H
T ss_pred cccc--------------------------------------------c--chhhh----------------HH-----H
Confidence 0000 0 00000 00 0
Q ss_pred HHHHHHHHH-HHHHHHHhHHHHhhccCcceEEEEecccccCCCCCCcccChh---hhhccchhHHHHHHHhhhhhhhhhh
Q 009129 296 VEELKAIIR-LLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSA---SLSLFDTLSVIFWAPIYDIVIVPFA 371 (543)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~ 371 (543)
..+.+.+.. .+................+.++. ....+ .+.. .+.....+..++..++..+ +.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~ 319 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV------EEIPG----MTAGFAANYLTGTMVCFFIGRFTGTW----LI 319 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSTT----CCHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCC----cchhHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 000011111 11111111111111111111101 11111 2222 2222223333333333333 44
Q ss_pred hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHh
Q 009129 372 RKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEF 451 (543)
Q Consensus 372 ~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 451 (543)
+| .++++.+..+.++.+++.+..... +..+....+++.+++.+...|..+++
T Consensus 320 ~r-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 320 SR-------FAPHKVLAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HH-------SCHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HH-------hcchHHHHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 455566777777777776655543 11223444577888888888999999
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 009129 452 FYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTT 491 (543)
Q Consensus 452 ~~~~~P~~~rg~~~g~~~~~~~ig~~l~~~i~~~~~~~~~ 491 (543)
..|..|++ ++++.++.. ...+|+.+++.+.+.+.+..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99999988 999999887 677999999999999987543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-24 Score=217.83 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=148.9
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
+.+++..++..+......+.++. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 45566777777777777777766 4578999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhH
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 166 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 166 (543)
.+.++++ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...++
T Consensus 81 ~~~~~~~-------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTSS-------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 9988864 8889999999999999999999999999999988 99999999999999
Q ss_pred HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHH
Q 009129 167 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 167 g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~ 200 (543)
|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999987766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-23 Score=215.96 Aligned_cols=391 Identities=8% Similarity=-0.033 Sum_probs=220.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+.+.+....++..+++..+.++++.|+++++|.|..+.|++.+.+.++..++++++|+++||+ ||||+++.+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4555666667777777888889999999999999999999999999999999999999999999 999999998887765
Q ss_pred HHHHH---HHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehh
Q 009129 84 GMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 160 (543)
Q Consensus 84 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 160 (543)
+.... ...... ...+..++.+.+++.+...+...+...+..++..+ +++..++..
T Consensus 86 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~~ 143 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRA 143 (417)
T ss_dssp CHHHHHHHTHHHHH------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHHH
T ss_pred HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHHH
Confidence 33222 111100 00123345555555544444444444444433211 167777777
Q ss_pred hhhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCc
Q 009129 161 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPAD 240 (543)
Q Consensus 161 ~~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (543)
+...++|..++|.+++++.+ .+|++.|++.++..++..+......++ +++..+ .+
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~-- 198 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VA-- 198 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SS--
T ss_pred HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------cc--
Confidence 78889999999999999876 589999987765433333222111111 100000 00
Q ss_pred chhhhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHHhHHHHhhc
Q 009129 241 KSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFATVY 319 (543)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (543)
++++ . ..++....+.. +..+++ +....... ......+....
T Consensus 199 --------~~~~--~------~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 199 --------NAVG--A------NHSAFSLKLAL---------------------ELFRQP-KLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp --------SSSS--S------CCCCCCHHHHH---------------------HHTTCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccc--c------ccccccHHHHH---------------------HHhcCC-chhhHHHHHHHHHHHHHHHH
Confidence 0000 0 00000000000 000111 11111111 11111111111
Q ss_pred cCcceEEEEecccccCCCCCCcccCh---hhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHH
Q 009129 320 SQMSTMFVLQGNTMDQHMGPNFKIPS---ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIF 396 (543)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~ 396 (543)
++.+.++. ...+ ...... +....++.+..++...+.. ++.|| .++++.+..+.++.++
T Consensus 241 ~~~~~~~~-------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g----~l~dr-------~g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 241 QQFANFFT-------SFFA-TGEQGTRVFGYVTTMGELLNASIMFFAP----LIINR-------IGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHH-------HTSS-SHHHHTHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHh-ccCCChhHHHHHHHHHHHHHHHHHHHHH----HHHHH-------hcHHHHHHHHHHHHHH
Confidence 11111110 0000 000111 1122222222223333332 34444 3444566677777766
Q ss_pred HHHHHHHHHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHH-HHHHHHHH
Q 009129 397 SMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVG 475 (543)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig 475 (543)
+++..... .+.+.+++..++.+++.....+..+.++.|..|++.||++.++ +++...+|
T Consensus 302 ~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 302 RIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 65544321 1334444555566666666667778999999999999999999 48888999
Q ss_pred HHHHHHHHHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcee
Q 009129 476 NYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTY 535 (543)
Q Consensus 476 ~~l~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 535 (543)
+.+++.+.|.+.+.. ++...|.+.+++.+++.++.++..|++++
T Consensus 362 ~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 362 MIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999887622 23456777788888877766655555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=135.89 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=149.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhc-cchhHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFSIIYC 82 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Grk~~l~~~~~~~~ 82 (543)
|..+.+++..++....++++..+++.|+++.+|.+..+.++..+...++..++.++.|+++||+ .|||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3455677778888889999999999999988999999999999999999999999999999994 288888888777766
Q ss_pred -HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 83 -LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 83 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
++.+++.+..+ .+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 332 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 388 (451)
T 1pw4_A 332 TIATIVYWMNPA-----------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 388 (451)
T ss_dssp HHHHHHTTSCCT-----------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHH
T ss_pred HHHHHHHHHhcc-----------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHH
Confidence 55555544321 136667777888999999888888999999999988 999999999
Q ss_pred hhHhH-HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHh
Q 009129 162 LSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 204 (543)
Q Consensus 162 ~~~~l-g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~ 204 (543)
...++ |..++|.+.+++.+..||+..|++.++..+++.++...
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999888777666655544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=127.65 Aligned_cols=168 Identities=15% Similarity=0.154 Sum_probs=137.8
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHH-HhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNY-LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 82 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~ 82 (543)
+..+..++..++....++++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 455666777777878888999999999 8888899999999999999999999999999999998 99999999999988
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhh
Q 009129 83 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 162 (543)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 162 (543)
++.+++...++ ... .+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~~-------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAGG-------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCCH-------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcCC-------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 88887776642 333 33447888999999999999999998844 455555555
Q ss_pred hHhHHHHHHhHHHHHhhcccc-cchhhhHHHHHHHHHHH
Q 009129 163 SINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVV 200 (543)
Q Consensus 163 ~~~lg~~l~~~i~~~~~~~~g-~~~~f~i~~~~~~i~~~ 200 (543)
...+|..++|.+.|++.+..| ++..|.+.++..++.++
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 556999999999999999988 99999987655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-12 Score=131.06 Aligned_cols=172 Identities=8% Similarity=-0.004 Sum_probs=129.3
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCC---CchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQ---GNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 86 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~---s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~ 86 (543)
++..++....++.....++.|+++.++. +..+.+...+...++..++.++.|+++||+ |||+.+..+.++..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHH
Confidence 3333444445555666788888766653 234456667777778888899999999999 999999988888887766
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeeh-hhhhHh
Q 009129 87 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-FYLSIN 165 (543)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ 165 (543)
.+++..+ .+.+++..++.+++.+...+...++++|.+|++. |+++.++ ++...+
T Consensus 305 ~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 305 GSSFATS-------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQ 359 (417)
T ss_dssp HHTTCCS-------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHH
T ss_pred HHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHh
Confidence 6655432 5566666677777777777777899999999888 9999888 477788
Q ss_pred HHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 166 IGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 166 lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+|..++|.++|++.+..|++..|.+.++..+++.+..+...+
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999988888888888888776666655444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=123.58 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHH-----HHHHHH
Q 009129 7 PLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-----SFSIIY 81 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~-----~~~~~~ 81 (543)
+.+.+..++....+....+.++.|.++.++.+..+.+...+...++..++.++.|++.||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 3344555666677777888899999988888888889999999999999999999999999 9986655 677777
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 82 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
.++.+++........ .+...+.+.+.+..++.|++.+...|...+++.|.+|++. |+++.++.+
T Consensus 365 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 428 (491)
T 4aps_A 365 GLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWF 428 (491)
T ss_dssp HHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHH
T ss_pred HHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 777666655431000 0011235667777888999999999999999999999999 999999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
...++|..++|.+.+++.+ .++...|.+.++..+++.+..+...++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 467777887777666665555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=107.26 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=123.0
Q ss_pred HHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 009129 10 SGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLT 89 (543)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~ 89 (543)
....++.....+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+...+.++.+.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHH
Confidence 3333443344333444445556677888887777777778888999999999999999 999999999999888877776
Q ss_pred HhhcccCCCCCCCCCCCCCCCchHHHHH-HHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHH
Q 009129 90 LTASVSGLKPSCDKDACHPTGAQTAVTF-VALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGA 168 (543)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 168 (543)
...... . .....+. ...+..+.+ ....|....+.+|.+|.+. |+++.++.+...++|.
T Consensus 361 ~~~~~~-------------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 361 TAFYTQ-------------A-PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLAN 419 (491)
T ss_dssp HHHHTT-------------C-CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHH
T ss_pred HHHhcc-------------c-chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHH
Confidence 553211 0 1122222 222222333 3345777899999999999 9999999999999999
Q ss_pred HHHhHHHHHhhc------ccccchhhhHHHHHHHHHHHHHHhcCcc
Q 009129 169 LVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSGSRL 208 (543)
Q Consensus 169 ~l~~~i~~~~~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 208 (543)
.+++.+.+++.+ ..++...|++.++..+++.+..+++.||
T Consensus 420 ~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 420 YFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 998877665533 3456677888777777776666666664
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-10 Score=112.79 Aligned_cols=161 Identities=11% Similarity=-0.032 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHH-HHH
Q 009129 5 SRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII-YCL 83 (543)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~-~~i 83 (543)
..+..++..++....++++..+++.|+++.+|.+..+.+...+...++..++.++.|+++||+ ||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 345566777778888888889999999988999999999999999999999999999999998 872 3333333 222
Q ss_pred HHH--HHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh
Q 009129 84 GMT--LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 161 (543)
Q Consensus 84 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 161 (543)
+.. ....... .+.+.+++..++.|++.+...|...+++.|..| ++ |+++.++.+
T Consensus 277 ~~~~~~~~~~~~-----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 277 GLLMWIPDWFGV-----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp SSSSSHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHhhhcc-----------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 222 1222110 135666777888999999999999999999998 66 999999999
Q ss_pred hhHhHHHHHHhHHHHHhhcccccchhhhHHH
Q 009129 162 LSINIGALVASSVLVWIQMNVGWGWGFGIPA 192 (543)
Q Consensus 162 ~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~ 192 (543)
...++|..++|.+.+.+.+..+++..+.+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999988777877766644
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.2e-07 Score=95.94 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=97.4
Q ss_pred hhhhhHHHHHHHHhhhhhhhHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCch
Q 009129 41 TASNNVTNWSGTCYITPLIGAFLA----DSYMGR----FWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQ 112 (543)
Q Consensus 41 ~~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (543)
..+.......++..+..++.|++. ||. || ++.+..+.++..++.++++...... .++...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~ 404 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALS 404 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcC
Confidence 355555555566666667776664 554 43 3566677777777776665542100 0001123
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhhHhHHHHHHhHHHHHhhccc--cc------
Q 009129 113 TAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMNV--GW------ 184 (543)
Q Consensus 113 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~l~~~i~~~~~~~~--g~------ 184 (543)
.+.+.+..++.|++.+...|...+++.|..|++. |++++++.+...++|..++|.+.+++.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 5667777889999999999999999999999998 999999999999999999999999987632 23
Q ss_pred ---chhhhHHHHHHHHHHHHHHhcCc
Q 009129 185 ---GWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 185 ---~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
+..|++.++..+++.+.+....+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366665555555554443333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 543 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 0.001
Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 22/191 (11%)
Query: 14 CCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWT 73
L YG+ YL++ + +S + L+ +++D
Sbjct: 259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 318
Query: 74 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPC 133
+ + + + + +G V + + +I G
Sbjct: 319 ATGVFFMTLVTIATIVYWMNPAG---------------NPTVDMICMIVIGFLIYGPVML 363
Query: 134 VSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLV-WIQMNVGWGWGFGIPA 192
+ + ++ + + L +G VA+S +V + GW GF +
Sbjct: 364 IGLHALELAP------KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 417
Query: 193 VAMAIAVVFFF 203
+AV+
Sbjct: 418 GGSILAVILLI 428
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.22 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.22 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.4e-26 Score=237.83 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=145.1
Q ss_pred hHHHHHHHHHhHhHHH---hHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 7 PLISGNECCERLAYYG---MSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 7 ~~~~~~~~~~~~~~~~---~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|.++...++..+..|. ..+....+++ ++|.|.+|.|++.+++.++..++.+++|+++||+ |||+++..+.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444445554444443 3455556775 5899999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.++++++.+.. .+...+++.|++.|++.|...+...++++|.+|+++ |++++++.+..
T Consensus 102 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~ 160 (447)
T d1pw4a_ 102 VMLFMGFVPWAT---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCA 160 (447)
T ss_dssp HHHHHHHCHHHH---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHH
T ss_pred HHhhccccchhh---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccc
Confidence 999888764311 136788999999999999999999999999999998 99999999999
Q ss_pred HhHHHHHHhHHHHHhhccc-ccchhhhHHHHHHHHHHHHHHhcCc
Q 009129 164 INIGALVASSVLVWIQMNV-GWGWGFGIPAVAMAIAVVFFFSGSR 207 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~-g~~~~f~i~~~~~~i~~~~~~~~~~ 207 (543)
.++|..++|.+++.+.... +|++.|++.+...++..+..+...+
T Consensus 161 ~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 161 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred cchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 9999999999888766544 7999999888766655554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.4e-24 Score=218.35 Aligned_cols=401 Identities=7% Similarity=-0.074 Sum_probs=238.4
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|+.|.+.+..++..+++....+.++.|+++++|.|.+++|++.+++.++..+++++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677888888888888888899999999999999999999999999999999999999999999 999999999999998
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
+.....+..+.+ ......++.+.+.+.+.+...+.......+..+++++ ++....+.....
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 146 (417)
T d1pv7a_ 86 MFAPFFIFIFGP---------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRARMF 146 (417)
T ss_dssp THHHHHHHTHHH---------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCHHHHHHH
T ss_pred HHHHHHHhhhhh---------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHHHHHhhh
Confidence 888887764310 0112223344444444444444444443333332221 155666677778
Q ss_pred HhHHHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHHHhcCcceeccCCCCChHHHHHHHHHHHHhhcccccCCcchh
Q 009129 164 INIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSL 243 (543)
Q Consensus 164 ~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (543)
...+..++|.+++.+.+. +|+..+........+..+......++.+..++++++..
T Consensus 147 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 202 (417)
T d1pv7a_ 147 GCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------- 202 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------------------
T ss_pred hccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------------------
Confidence 888999999999988774 45555555554444444443333332221111100000
Q ss_pred hhhhhhhhhhcccCcccccCcccchhhhhhhhhcccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHHHHhhccCcc
Q 009129 244 LYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVYSQMS 323 (543)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (543)
+ . .+........... +...........................
T Consensus 203 --------~-~--------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (417)
T d1pv7a_ 203 --------A-N--------HSAFSLKLALELF------------------RQPKLWFLSLYVIGVSCTYDVFDQQFAN-- 245 (417)
T ss_dssp --------S-C--------CCCCCHHHHHHHT------------------TSSHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred --------h-h--------ccccccccccccc------------------ccccccchhhhhHHHHHHHHhhhccccc--
Confidence 0 0 0000000000000 0000111111111111111111000000
Q ss_pred eEEEEecccccCCCCCCcccChhhhhccchhHHHHHHHhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 009129 324 TMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGI 403 (543)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 403 (543)
.. ..... ....+....... .....+...+...+..++.+| .++++.+..+.++.+++.+....
T Consensus 246 -----~~---~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~r-------~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 246 -----FF---TSFFA-TGEQGTRVFGYV-TTMGELLNASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp -----HH---TTSSS-CHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----cc---ccccc-ccccchhhhccc-ccccccccccchhhhhhhhcc-------cccccchhhhHHHHHHhhhcccc
Confidence 00 00000 001111111111 111112222222222334444 55557777888887777766654
Q ss_pred HHHHhHhhhhccCccCCCCccchhHHHHHHHHHHHHHHHHhhhhhhHhhhcccCcchHHHHHHHH-HHHHHHHHHHHHHH
Q 009129 404 LEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS-LTTVAVGNYLSTLL 482 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~l~~~i 482 (543)
. .+.+..++..++.+++.+...+...+++.|..|++.||++.|+. ++...+|..+++.+
T Consensus 309 ~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 368 (417)
T d1pv7a_ 309 A--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred c--------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35566677788899999999999999999999999999999985 56778999999999
Q ss_pred HHHhHhhhccCCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhceeecc
Q 009129 483 VTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKA 538 (543)
Q Consensus 483 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~ 538 (543)
.+.+.+..+ +...|+++++++++..++.++..|+.+..+.
T Consensus 369 ~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 369 AGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 999987542 3456788888888888887777776655433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.5e-11 Score=125.26 Aligned_cols=178 Identities=14% Similarity=0.059 Sum_probs=140.0
Q ss_pred ccchHHHHHHHHHhHhHHHhHHHHHHHHhhhcCCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHH
Q 009129 4 YSRPLISGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCL 83 (543)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i 83 (543)
|..+.+....++.....+++..+.+.|+++..+.+..+.+...+...++..++.+++|+++||+ +||+..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4456677778888888999999999999999999999999999999999999999999999998 887655544444333
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhhhh
Q 009129 84 GMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLS 163 (543)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (543)
..+........ ...+.+...+..++.|++.+...+....+..|.+|++. |+++.++.+..
T Consensus 328 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~ 387 (447)
T d1pw4a_ 328 VTIATIVYWMN--------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLF 387 (447)
T ss_dssp HHHHHHHTTSC--------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 33333222110 11236666777788899988888999999999999988 99999999888
Q ss_pred HhH-HHHHHhHHHHHhhcccccchhhhHHHHHHHHHHHHH
Q 009129 164 INI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFF 202 (543)
Q Consensus 164 ~~l-g~~l~~~i~~~~~~~~g~~~~f~i~~~~~~i~~~~~ 202 (543)
.++ |.+++|.+.+++.+..||+..|.+.++..+++.++.
T Consensus 388 ~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 388 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 777 567789999999999999999888776655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=5.7e-12 Score=125.82 Aligned_cols=146 Identities=8% Similarity=-0.014 Sum_probs=123.9
Q ss_pred CCCchhhhhhHHHHHHHHhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCchHHH
Q 009129 36 NQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAV 115 (543)
Q Consensus 36 ~~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (543)
+.+....+...+...++..++.++.|++.||+ |||+.+..+.++..++.+.....++ .+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 314 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATS-------------------ALE 314 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCCC-------------------HHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccccc-------------------cch
Confidence 34556667777888888999999999999999 9999999999999998888887754 777
Q ss_pred HHHHHHHHHhhccCCCcchhhhhhcccCCCCccccccccceeehhh-hhHhHHHHHHhHHHHHhhcccccchhhhHHHHH
Q 009129 116 TFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY-LSINIGALVASSVLVWIQMNVGWGWGFGIPAVA 194 (543)
Q Consensus 116 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~l~~~i~~~~~~~~g~~~~f~i~~~~ 194 (543)
+++..++.|++.+...+...+++.|.+|++. |++.++..+ ....+|..++|.+.|++.+.+|++..|++.++.
T Consensus 315 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~ 388 (417)
T d1pv7a_ 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 8888889999999999999999999999998 999999754 566799999999999999999999999988877
Q ss_pred HHHHHHHHHhcCc
Q 009129 195 MAIAVVFFFSGSR 207 (543)
Q Consensus 195 ~~i~~~~~~~~~~ 207 (543)
.++..++..+..+
T Consensus 389 ~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 389 ALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhc
Confidence 6665555444433
|