Citrus Sinensis ID: 009153

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHccHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHccccEEEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccHEEEEHHHHHccccccccHHHHHHHHccccccEEEEEccccccccEcccHccccccEEEEEEccccccccccccHHHHcccHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccHcccccccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccc
msnlhgwggplpqswLDQQLVLQKKILVRIYElgmnpvlpafsgnvpaalqnvfpsakitqlgnwfsvksdprwcctylldatdpLFIEIGRAFIEQQLKEygrtshiyncdtfdentppvdspeyiSSLGAAIYsgmqsgdsDAVWLMQGWlfsydpfwrppqmkallnsvplgkLVVLDLFAevkpiwstskqfygVPYIWCMLHNfagniemygildsiafgpveartsenttMAWINQYSvrrygrsvpaIQDAWNVLYHTVynctdgatdknrdvivafpdvdpsiisvtegkyqnygkpvskeavlksetssydhphlwysTSEVIRALELFIASgnelsasntyrydlIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGllachdgfllgpWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIEslesgdgfrlkDWRREWIKLTNdwqngrnvypvesngdaLITSQWLYNKYlqgtgvfdh
msnlhgwggplpqSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPdvdpsiisvtegkyqnygkpVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLtndwqngrnvyPVESNGDALITSQWLYNKYLQGTGVFDH
MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH
******WGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENT*****PEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPV****V******SYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAK**********QYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGV***
MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQG******
MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQ**********YEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH
*****GWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTG****
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MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query542 2.2.26 [Sep-21-2011]
P54802743 Alpha-N-acetylglucosamini yes no 0.911 0.664 0.349 9e-97
>sp|P54802|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2 Back     alignment and function desciption
 Score =  354 bits (909), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 199/570 (34%), Positives = 303/570 (53%), Gaps = 76/570 (13%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NLH W GPLP SW  +QL LQ ++L ++   GM PVLPAF+G+VP A+  VFP   +T
Sbjct: 204 MGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEAVTRVFPQVNVT 263

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           ++G+W        + C++LL   DP+F  IG  F+ + +KE+G T HIY  DTF+E  PP
Sbjct: 264 KMGSWGHFNCS--YSCSFLLAPEDPIFPIIGSLFLRELIKEFG-TDHIYGADTFNEMQPP 320

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPLGKLVV 179
              P Y+++   A+Y  M + D++AVWL+QGWLF + P FW P Q++A+L +VP G+L+V
Sbjct: 321 SSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLV 380

Query: 180 LDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTM-- 237
           LDLFAE +P+++ +  F G P+IWCMLHNF GN  ++G L+++  GP  AR   N+TM  
Sbjct: 381 LDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVG 440

Query: 238 --------------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHT 265
                                           AW+  ++ RRYG S P    AW +L  +
Sbjct: 441 TGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRS 500

Query: 266 VYNCT-DGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHL 324
           VYNC+ +     NR  +V  P                          L+  TS      +
Sbjct: 501 VYNCSGEACRGHNRSPLVRRPS-------------------------LQMNTS------I 529

Query: 325 WYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAH 384
           WY+ S+V  A  L + S   L+ S  +RYDL+DLTRQA+ +  +  +     AY   +  
Sbjct: 530 WYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELA 589

Query: 385 GVFQLSRRFL-ELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMW 443
            + +       EL+  +D +LA    FLLG WLE A+  A +E +   YE N+R Q+T+W
Sbjct: 590 SLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW 649

Query: 444 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKL 503
                 E ++L DY NK  +GL+ +YY PR  ++ + +++S+  G  F+   + +   +L
Sbjct: 650 ----GPEGNIL-DYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQL 704

Query: 504 TNDWQNGRNVYPVESNGDALITSQWLYNKY 533
              +   +  YP +  GD +  ++ ++ KY
Sbjct: 705 EQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734
Involved in the degradation of heparan sulfate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
255540793 809 alpha-n-acetylglucosaminidase, putative 1.0 0.669 0.755 0.0
225457148 813 PREDICTED: alpha-N-acetylglucosaminidase 0.998 0.665 0.756 0.0
224121634 812 predicted protein [Populus trichocarpa] 1.0 0.667 0.739 0.0
356519003 812 PREDICTED: alpha-N-acetylglucosaminidase 0.983 0.656 0.746 0.0
297733843 846 unnamed protein product [Vitis vinifera] 0.998 0.639 0.702 0.0
449441031 808 PREDICTED: alpha-N-acetylglucosaminidase 0.983 0.659 0.711 0.0
326515664 829 predicted protein [Hordeum vulgare subsp 0.985 0.644 0.633 0.0
222629680 1129 hypothetical protein OsJ_16433 [Oryza sa 0.985 0.472 0.635 0.0
326519955 829 predicted protein [Hordeum vulgare subsp 0.985 0.644 0.633 0.0
218195716 829 hypothetical protein OsI_17702 [Oryza sa 0.985 0.644 0.635 0.0
>gi|255540793|ref|XP_002511461.1| alpha-n-acetylglucosaminidase, putative [Ricinus communis] gi|223550576|gb|EEF52063.1| alpha-n-acetylglucosaminidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/576 (75%), Positives = 489/576 (84%), Gaps = 34/576 (5%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NLH WGG LPQSW  QQL+LQKKIL R+YELGMNPVLPAFSGNVPAAL+N+FPSAKI 
Sbjct: 234 MGNLHRWGGSLPQSWFFQQLILQKKILARMYELGMNPVLPAFSGNVPAALRNIFPSAKIA 293

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           +LGNWFSVKSD RWCCTYLLDATDPLFIEIGRAFIEQQL+EYG TSHIYNCDTFDENTPP
Sbjct: 294 RLGNWFSVKSDLRWCCTYLLDATDPLFIEIGRAFIEQQLEEYGSTSHIYNCDTFDENTPP 353

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
           VD P+YIS+LGAA++ GMQSGD+DAVWLMQGWLFSYDPFWRPPQMKALL+SVP+G+LVVL
Sbjct: 354 VDDPKYISALGAAVFKGMQSGDNDAVWLMQGWLFSYDPFWRPPQMKALLHSVPVGRLVVL 413

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTM--- 237
           DLFAEVKPIW++S QFYGVPYIWCMLHNFAGN+EMYGILDSIA GPVEARTSEN+TM   
Sbjct: 414 DLFAEVKPIWTSSYQFYGVPYIWCMLHNFAGNVEMYGILDSIASGPVEARTSENSTMVGV 473

Query: 238 ------------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHTVY 267
                                         AWIN YS RRYGRSVP+IQDAW++LYHTVY
Sbjct: 474 GMSMEGIEQNPVVYDLMSEMAFQHKKVDVKAWINLYSTRRYGRSVPSIQDAWDILYHTVY 533

Query: 268 NCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYS 327
           NCTDGA DKNRDVIVAFPDV+P   SV++ ++   GKPVS+ AVLK  + SYDHPHLWYS
Sbjct: 534 NCTDGAYDKNRDVIVAFPDVNPFYFSVSQKRHHLNGKPVSRRAVLKENSDSYDHPHLWYS 593

Query: 328 TSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVF 387
           TSEV+ ALELFI SG ELS S+TY YDL+DLTRQALAKY NELFL IIE+YQ ND +GV 
Sbjct: 594 TSEVLHALELFITSGEELSGSSTYSYDLVDLTRQALAKYGNELFLKIIESYQANDGNGVA 653

Query: 388 QLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNT 447
             S++FL+LVEDMD LL CH+GFLLGPWLESAKQLAQ++EQEKQ+EWNARTQITMWFDNT
Sbjct: 654 SRSQKFLDLVEDMDTLLGCHEGFLLGPWLESAKQLAQDQEQEKQFEWNARTQITMWFDNT 713

Query: 448 QEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDW 507
           ++EASLL DYGNKYWSGLL+DYYGPRAAIYFKY+I+SLE+G  F LKDWRREWIKLTN+W
Sbjct: 714 EDEASLLHDYGNKYWSGLLQDYYGPRAAIYFKYLIKSLENGKVFPLKDWRREWIKLTNEW 773

Query: 508 QNGRNVYPVESNGDALITSQWLYNKYLQGTG-VFDH 542
           Q  RN +PV+SNG+ALI S+WLY+KYL+     +DH
Sbjct: 774 QRSRNKFPVKSNGNALIISKWLYDKYLRNPDTTYDH 809

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457148|ref|XP_002280399.1| PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121634|ref|XP_002318632.1| predicted protein [Populus trichocarpa] gi|222859305|gb|EEE96852.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519003|ref|XP_003528164.1| PREDICTED: alpha-N-acetylglucosaminidase-like [Glycine max] Back     alignment and taxonomy information
>gi|297733843|emb|CBI15090.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441031|ref|XP_004138287.1| PREDICTED: alpha-N-acetylglucosaminidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|326515664|dbj|BAK07078.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|222629680|gb|EEE61812.1| hypothetical protein OsJ_16433 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|326519955|dbj|BAK03902.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|218195716|gb|EEC78143.1| hypothetical protein OsI_17702 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
TAIR|locus:2173209806 CYL1 "AT5G13690" [Arabidopsis 0.442 0.297 0.680 4.5e-176
UNIPROTKB|F1S1D7744 NAGLU "Uncharacterized protein 0.433 0.315 0.502 2.4e-91
RGD|1564228739 Naglu "N-acetylglucosaminidase 0.966 0.709 0.372 3.5e-91
UNIPROTKB|P54802743 NAGLU "Alpha-N-acetylglucosami 0.963 0.702 0.352 1.6e-86
UNIPROTKB|H9L296601 H9L296 "Uncharacterized protei 0.915 0.825 0.362 9.4e-82
FB|FBgn0014417778 CG13397 [Drosophila melanogast 0.957 0.667 0.327 1e-77
UNIPROTKB|A6QM01667 NAGLU "NAGLU protein" [Bos tau 0.431 0.350 0.504 4.1e-77
DICTYBASE|DDB_G0291998798 naglu "alpha-N-acetylglucosami 0.946 0.642 0.306 1.3e-70
TAIR|locus:2173209 CYL1 "AT5G13690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 941 (336.3 bits), Expect = 4.5e-176, Sum P(2) = 4.5e-176
 Identities = 164/241 (68%), Positives = 199/241 (82%)

Query:     1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
             M NLH WGGPL ++WLD QL+LQK+IL R+ + GM PVLP+FSGNVP+AL+ ++P A IT
Sbjct:   231 MGNLHAWGGPLSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALRKIYPEANIT 290

Query:    61 QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
             +L NW +V  D RWCCTYLL+ +DPLFIEIG AFI+QQ +EYG  ++IYNCDTF+ENTPP
Sbjct:   291 RLDNWNTVDGDSRWCCTYLLNPSDPLFIEIGEAFIKQQTEEYGEITNIYNCDTFNENTPP 350

Query:   121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPLGKLVV 179
                PEYISSLGAA+Y  M  G+ +AVWLMQGWLFS D  FW+PPQ+KALL+SVP GK++V
Sbjct:   351 TSEPEYISSLGAAVYKAMSKGNKNAVWLMQGWLFSSDSKFWKPPQLKALLHSVPFGKMIV 410

Query:   180 LDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMAW 239
             LDL+AEVKPIW+ S QFYG PYIWCMLHNF GNIEMYG LDSI+ GPV+AR S+N+TM  
Sbjct:   411 LDLYAEVKPIWNKSAQFYGTPYIWCMLHNFGGNIEMYGALDSISSGPVDARVSKNSTMVG 470

Query:   240 I 240
             +
Sbjct:   471 V 471
GO:0004561 "alpha-N-acetylglucosaminidase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
UNIPROTKB|F1S1D7 NAGLU "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1564228 Naglu "N-acetylglucosaminidase, alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P54802 NAGLU "Alpha-N-acetylglucosaminidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H9L296 H9L296 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0014417 CG13397 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A6QM01 NAGLU "NAGLU protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291998 naglu "alpha-N-acetylglucosaminidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!
3rd Layer3.2.1.50LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII000747
hypothetical protein (812 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2399.1
hypothetical protein (454 aa)
• •  •  0.919
gw1.XIII.847.1
hypothetical protein (437 aa)
  •  •  0.914
gw1.28.778.1
hypothetical protein (434 aa)
     •  0.899
gw1.133.86.1
hypothetical protein (437 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
pfam05089333 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (N 1e-114
pfam12972269 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase 1e-103
>gnl|CDD|218423 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain Back     alignment and domain information 
 Score =  340 bits (875), Expect = e-114
 Identities = 124/238 (52%), Positives = 160/238 (67%), Gaps = 7/238 (2%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NL GWGGPLPQSW+D+QL LQKKIL R+ ELGM PVLPAF+G+VP AL+  +P A IT
Sbjct: 75  MGNLEGWGGPLPQSWIDKQLALQKKILDRMRELGMTPVLPAFAGHVPRALKRKYPEANIT 134

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           + G W        +   Y LD TDPLF +I   F+E+Q K YG T HIY+ D F+E  PP
Sbjct: 135 RQGRWGG------FHRPYFLDPTDPLFAKIAARFLEEQKKLYG-TDHIYSADPFNEGGPP 187

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
              P+Y+++ G AIY  MQ  D DAVW++QGWLF    FW+   ++A L++VP G+L+VL
Sbjct: 188 SGDPDYLAAAGQAIYKSMQKADPDAVWVLQGWLFVDSDFWQANPIEAFLSAVPKGRLLVL 247

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMA 238
           DLF+E  P W  ++ FYG P+IWCMLHNF GN  +YG LD +A G   AR +  + + 
Sbjct: 248 DLFSERYPQWKRTESFYGKPWIWCMLHNFGGNTGLYGNLDLVASGIEAARANPGSNLV 305

Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. Length = 333
>gnl|CDD|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 542
KOG2233666 consensus Alpha-N-acetylglucosaminidase [Intracell 100.0
PF05089333 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-b 100.0
PF12972267 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-t 100.0
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 93.58
PF00150281 Cellulase: Cellulase (glycosyl hydrolase family 5) 93.12
PF12891239 Glyco_hydro_44: Glycoside hydrolase family 44; Int 80.68
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.7e-156  Score=1210.54  Aligned_cols=497  Identities=44%  Similarity=0.860  Sum_probs=480.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 009153            1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL   80 (542)
Q Consensus         1 MgNi~gwGGPLp~~wi~~q~~Lq~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~~~~~~~L   80 (542)
                      ||||++||||||++|+..|..|||||++|||+||||||||+|+||||++++++||++++++++.|+.|+  ++|||.++|
T Consensus       134 MGNl~awgGpLs~aw~~~ql~LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~--s~~~C~l~v  211 (666)
T KOG2233|consen  134 MGNLHAWGGPLSPAWMLNQLLLQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT--SRYSCMLLV  211 (666)
T ss_pred             hcCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC--cceeeeEEc
Confidence            999999999999999999999999999999999999999999999999999999999999999999997  699999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 009153           81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW  160 (542)
Q Consensus        81 dP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~p~~~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~fW  160 (542)
                      .|+||||.+||.+|+++|+|+||.++|+|+||||||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+||
T Consensus       212 ~P~dplF~eIgs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~FW  291 (666)
T KOG2233|consen  212 SPFDPLFQEIGSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDPFW  291 (666)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCCCC
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHhHhCCCCCCEEEEEcCCCccccccccCCCCCCCceeecccCCCcccccccchhHhhcChHHHHhCCCCch---
Q 009153          161 RPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTM---  237 (542)
Q Consensus       161 ~~~~~~a~L~~Vp~~~mliLDL~sE~~p~w~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m---  237 (542)
                      ++.++||||++||.|+||||||++|..|+|++|.+|+|||||||||||||||.+|+|.++.|+.||..|+..+||+|   
T Consensus       292 ~~~~ikafL~avP~GrllVLDLyaEv~P~~~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGt  371 (666)
T KOG2233|consen  292 PPWQIKAFLSAVPRGRLLVLDLYAEVVPAWQMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGT  371 (666)
T ss_pred             ChHHHHHHHhcCCcCcEEEEehhhhhhhHHHhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986   


Q ss_pred             ------------------------------hhHHhhhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCC-CcceeeccC
Q 009153          238 ------------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKN-RDVIVAFPD  286 (542)
Q Consensus       238 ------------------------------~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~-~~~i~~~P~  286 (542)
                                                    .|+++|+.+|||+.++.+++||.+|.+|||||+++...++ .+.+..||+
T Consensus       372 Gm~~EgI~QN~VvYsf~~e~~wsde~ldl~~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~rRp~  451 (666)
T KOG2233|consen  372 GMSMEGIDQNYVVYSFMIERGWSDEPLDLNNWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLYRRPS  451 (666)
T ss_pred             ccCccccccchhhHHHHHHhccCCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeEeccc
Confidence                                          9999999999999999999999999999999998776665 566667776


Q ss_pred             CCCccccccccccccCCCCccccccccccCCCCCCCCccCCHHHHHHHHHHHHhccccCCCC-CcccchHHHHHHHHHHH
Q 009153          287 VDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSAS-NTYRYDLIDLTRQALAK  365 (542)
Q Consensus       287 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~-~~y~yDLvDvtRQvL~n  365 (542)
                      ++                               .++.+||+.+++..||++||.+.+.+..+ ++|||||||||||+|+.
T Consensus       452 f~-------------------------------~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqe  500 (666)
T KOG2233|consen  452 FQ-------------------------------RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQE  500 (666)
T ss_pred             cc-------------------------------CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHH
Confidence            54                               14679999999999999999988777666 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCC
Q 009153          366 YANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFD  445 (542)
Q Consensus       366 ~~~~~~~~~~~Ay~~~d~~~f~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~qIT~WG~  445 (542)
                      .++++|.++.+||..||...+.+.|.++++|++|||.+|+++.+||||.||++||+.|.+.+|++.||.|||+|||+|||
T Consensus       501 lanq~y~e~~sAflkkd~~sl~~~~~~llelf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp  580 (666)
T KOG2233|consen  501 LANQAYLEARSAFLKKDKQSLGALSEKLLELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGP  580 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCcccccccccchhhhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHhhhhhcCCCcCCCCCCCcHHH
Q 009153          446 NTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREW-IKLTNDWQNGRNVYPVESNGDALI  524 (542)
Q Consensus       446 ~~~~~~~~L~DYA~k~WaGL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~~~~~~-~~~E~~W~~~~~~y~~~p~gd~~~  524 (542)
                      .     |+|+||||||||||++|||.|||++|++.+.++++.|++|+.++|..+| ..+|.+++.++.+||++|.||+++
T Consensus       581 ~-----gqilDYA~kqwaGLvsdYY~pRwrlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs~s~~vYPv~p~Gdt~~  655 (666)
T KOG2233|consen  581 T-----GQILDYANKQWAGLVSDYYGPRWRLFLEWILESLHDGKPFNHTEFSISVFRDVERPFSISNIVYPVKPKGDTLA  655 (666)
T ss_pred             C-----cchhhHHHHHHHHhhhhcccHHHHHHHHHHHHHHhcCCCccccchhhHHHHhhhccccccccccccCCCccHHH
Confidence            5     5899999999999999999999999999999999999999999999998 599999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 009153          525 TSQWLYNKYLQ  535 (542)
Q Consensus       525 ~a~~l~~ky~~  535 (542)
                      +++.|+.||++
T Consensus       656 is~~if~ky~P  666 (666)
T KOG2233|consen  656 ISRHIFSKYFP  666 (666)
T ss_pred             HHHHHHHhcCC
Confidence            99999999973

>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate [] Back     alignment and domain information
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate [] Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
2vc9_A891 Family 89 Glycoside Hydrolase From Clostridium Perf 1e-54
4a4a_A914 Cpgh89 (E483q, E601q), From Clostridium Perfringens 3e-54
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin Length = 891 Back     alignment and structure 
Iteration: 1

 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/563 (28%), Positives = 257/563 (45%), Gaps = 80/563 (14%)
Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M N+ G+GGPLP  W +Q+  L +K+  R+   G+NPVL  +SG VP   +     A+  
Sbjct: 344 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTI 403
Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDE--NT 118
             G W      P    TY+ +     F ++   F E+Q + +G  ++ Y  D F E  NT
Sbjct: 404 SQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHEGGNT 462
Query: 119 PPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLV 178
             +D+      +   I + M   D+DAVW++Q W  +       P    L       + +
Sbjct: 463 GDLDN----GKIYEIIQNKMIEHDNDAVWVIQNWQGN-------PSNNKLEGLTKKDQAM 511
Query: 179 VLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFG-PVEARTSENTT- 236
           VLDLF+EV P W+  ++   +P+IW MLHNF G + M    + +A   P     SE+   
Sbjct: 512 VLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALANSEHMVG 570
Query: 237 --------------------MAW----IN------QYSVRRYGRSVPAIQDAWNVLYHTV 266
                               MAW    IN       Y  RRYG++   I +AWN++  T 
Sbjct: 571 IGITPEAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTA 630
Query: 267 YNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWY 326
           Y        K  D    +     SII+   G    +G        +KS  S++ H  + Y
Sbjct: 631 YK-------KRNDY---YQGAAESIINARPG----FG--------IKS-ASTWGHSKIVY 667
Query: 327 STSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGV 386
             SE  +A+E+F  + +E   S+ + YD  D+ +Q LA  A E +  +  AY   +    
Sbjct: 668 DKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKF 727
Query: 387 FQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQ--EKQYEWNARTQITMWF 444
             +S +FLEL++  + +L+    FL+G W+E A+ + ++ +   +  +E+NAR  +T W 
Sbjct: 728 KFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWG 787
Query: 445 DNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLT 504
                +   L+DY N+ WSGL  DYY  R   +   +   L+ G     K    +W K+ 
Sbjct: 788 SRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGG----AKAPNIDWFKME 843
Query: 505 NDWQNGRN----VYPVESNGDAL 523
            DW N ++    +YP E++ + L
Sbjct: 844 YDWVNKKSDTDKLYPTEASNENL 866
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose Length = 914 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
4a4a_A914 Alpha-N-acetylglucosaminidase family protein; hydr 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Length = 914 Back     alignment and structure
 Score =  546 bits (1409), Expect = 0.0
 Identities = 143/568 (25%), Positives = 236/568 (41%), Gaps = 69/568 (12%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M N+ G+GGPLP  W +Q+  L +K+  R+   G+NPVL  +SG VP   +     A+  
Sbjct: 367 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTI 426

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
             G W      P    TY+ +     F ++   F E+Q + +G  ++ Y  D F +    
Sbjct: 427 SQGGWCGF-DRPDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNT 485

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
                    +   I + M   D+DAVW++Q W          P    L       + +VL
Sbjct: 486 --GDLDNGKIYEIIQNKMIEHDNDAVWVIQNW-------QGNPSNNKLEGLTKKDQAMVL 536

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENT----- 235
           DLF+EV P W+   +   +P+IW MLHNF G + M    + +A    +A  +        
Sbjct: 537 DLFSEVSPDWNRL-EERDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALANSEHMVGIG 595

Query: 236 -TM--------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHTVYN 268
            T                            W   Y  RRYG++   I +AWN++  T Y 
Sbjct: 596 ITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYK 655

Query: 269 CTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYST 328
             +       + I+      P                           S++ H  + Y  
Sbjct: 656 KRNDYYQGAAESIINAR---PGF--------------------GIKSASTWGHSKIVYDK 692

Query: 329 SEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQ 388
           SE  +A+E+F  + +E   S+ + YD  D+ +Q LA  A E +  +  AY   +      
Sbjct: 693 SEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKF 752

Query: 389 LSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQN--EEQEKQYEWNARTQITMWFDN 446
           +S +FLEL++  + +L+    FL+G W+E A+ + ++  +  +  +E+NAR  +T W   
Sbjct: 753 VSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSR 812

Query: 447 TQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTND 506
              +   L+DY N+ WSGL  DYY  R   +   +   L+ G      DW +      N 
Sbjct: 813 NNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNIDWFKMEYDWVNK 872

Query: 507 WQNGRNVYPVESNGDALIT-SQWLYNKY 533
             +   +YP E++ + L   ++     Y
Sbjct: 873 KSDTDKLYPTEASNENLGELAKIAMESY 900
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
4a4a_A914 Alpha-N-acetylglucosaminidase family protein; hydr 100.0
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 94.89
1kwg_A645 Beta-galactosidase; TIM barrel, glycoside hydrolas 94.72
3tty_A675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 94.16
3qr3_A340 Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A 92.28
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 91.62
2osx_A481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 91.26
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 90.58
1h4p_A408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 90.48
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 89.73
1qnr_A344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 89.42
3ndz_A345 Endoglucanase D; cellotriose, xylanase, carbohydra 88.64
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 88.51
1vjz_A341 Endoglucanase; TM1752, structural genomics, JCSG, 87.89
3l55_A353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 87.09
3nco_A320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 86.49
1ceo_A343 Cellulase CELC; glycosyl hydrolase, family A/5 of 86.09
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 83.37
1h1n_A305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 81.57
3aof_A317 Endoglucanase; glycosyl hydrolase family 5, cellul 80.93
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 80.8
1rh9_A373 Endo-beta-mannanase; endo-beta-mannase, retaining, 80.49
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
Probab=100.00  E-value=1.7e-157  Score=1338.28  Aligned_cols=493  Identities=30%  Similarity=0.588  Sum_probs=460.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 009153            1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL   80 (542)
Q Consensus         1 MgNi~gwGGPLp~~wi~~q~~Lq~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~~~~~~~L   80 (542)
                      ||||+|||||||++||++|.+||||||+|||||||+||||||+||||++||++||+|+|+++|.|+||.+ +.+|+|++|
T Consensus       367 MgNl~~wgGPLp~~w~~~q~~Lq~kIl~RmrelGM~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~gf~~-~~~~~~~~l  445 (914)
T 4a4a_A          367 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVN  445 (914)
T ss_dssp             TTSCCSTTCCCCTTHHHHHHHHHHHHHHHHHHHTCEEEEECCSCEECTTHHHHSTTCCEECCCEETTEEC-CEEECSSCC
T ss_pred             hcCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeecCCCcCCCCChHHHhhCCCCeeecCCCCCCCCC-chhcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985 566779999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 009153           81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW  160 (542)
Q Consensus        81 dP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~p~~~d~~~L~~~~~~iy~am~~~dP~AvWvmQgW~F~~~~fW  160 (542)
                      +|+||||++||++||+||+++||+++|||+||||||++|+.+.+  |++++++||++|+++||+||||||||+|.     
T Consensus       446 ~p~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~FnE~~~~~~~~--l~~~~~~v~~am~~~dp~AvWv~QgW~~~-----  518 (914)
T 4a4a_A          446 EGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNTGDLD--NGKIYEIIQNKMIEHDNDAVWVIQNWQGN-----  518 (914)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCSCCSEEECCTTTTSCCCTTCC--HHHHHHHHHHHHHHHCTTCEEEEEEBTTB-----
T ss_pred             CCCChHHHHHHHHHHHHHHHHhCCcccccccCccccCCCCCCcC--HHHHHHHHHHHHHHhCCCCEEEEcccCCC-----
Confidence            99999999999999999999999668999999999998765533  89999999999999999999999999974     


Q ss_pred             CchhHHHhHhCCCC-CCEEEEEcCCCccccccccCCCCCCCceeecccCCCcccccccchhHhhcChHHHHhCCCCch--
Q 009153          161 RPPQMKALLNSVPL-GKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTM--  237 (542)
Q Consensus       161 ~~~~~~a~L~~Vp~-~~mliLDL~sE~~p~w~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m--  237 (542)
                       +.  +++|++||+ ||||||||+||..|+|+++++ +|||||||||||||||+||+|+++.|+++|.+|+.. +++|  
T Consensus       519 -~~--~~~L~~vp~~~~mlvLDL~se~~p~w~~~~~-~G~pwiwc~L~NFGGn~gl~G~~~~~~~~~~~a~~~-~~~m~G  593 (914)
T 4a4a_A          519 -PS--NNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALAN-SEHMVG  593 (914)
T ss_dssp             -SC--HHHHTTCSCGGGEEEEETTTTTSCCCHHHHT-TTCCEEEEECCCSTTCCSSCCCHHHHHHHHHHHHHT-CSCEEE
T ss_pred             -Ch--HHHHhCCCCCCCEEEEEcccccccccchhhh-CCCceEEeccccCCCCCCCcccHHHHhhhHHHHhhc-CCCceE
Confidence             33  479999997 999999999999999999987 899999999999999999999999999999999875 4555  


Q ss_pred             -------------------------------hhHHhhhhcccCCCChHHHHHHHHHHhcccCCCCCCCC-CCCcceeecc
Q 009153          238 -------------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATD-KNRDVIVAFP  285 (542)
Q Consensus       238 -------------------------------~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~-~~~~~i~~~P  285 (542)
                                                     +||++||+||||+.++++++||+||++|||||+..... .+++++++||
T Consensus       594 ~G~tpEgie~NpvvYeL~~e~aW~~~~id~~~W~~~ya~~RYG~~~~~~~~AW~~L~~tvY~~~~~~~~~~~~s~~~~rP  673 (914)
T 4a4a_A          594 IGITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINARP  673 (914)
T ss_dssp             EEECCSCSCSCHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHTTTSCCCSCCCSSCCCGGGSCS
T ss_pred             EeechhhcccCHHHHHHHHhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhcCCCCccccCCCcCeeeeCC
Confidence                                           99999999999999999999999999999999864333 3568888888


Q ss_pred             CCCCccccccccccccCCCCccccccccccCCCCCCCCccCCHHHHHHHHHHHHhccccCCCCCcccchHHHHHHHHHHH
Q 009153          286 DVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAK  365 (542)
Q Consensus       286 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~~~y~yDLvDvtRQvL~n  365 (542)
                      +|+..                        ..++|+++.++|||++|++||++||+++++|+++++|||||||||||||+|
T Consensus       674 ~l~~~------------------------~~~~w~~~~~~Yd~~~~~~A~~lll~~~~~l~~s~~y~yDLvDvtRQ~l~n  729 (914)
T 4a4a_A          674 GFGIK------------------------SASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLAN  729 (914)
T ss_dssp             CSSCC------------------------CSSTTCCCCCCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc------------------------CccccCcccccCCHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHH
Confidence            87633                        346789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHhhCCCHH--HHHHHHHHhhhccccc
Q 009153          366 YANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEE--QEKQYEWNARTQITMW  443 (542)
Q Consensus       366 ~~~~~~~~~~~Ay~~~d~~~f~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~--ek~~yE~NAR~qIT~W  443 (542)
                      +++.+|.++++||+++|.+.|++++++||+||.+||+||+||++|+||+||++||++|.+++  ||++||+|||+|||+|
T Consensus       730 ~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~ll~~~D~lL~t~~~flLg~Wl~~Ar~~a~~~~~~e~~~yE~NAR~qIT~W  809 (914)
T 4a4a_A          730 SAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTW  809 (914)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCGGGBHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCHHHHHHHHHHhHheEeec
Confidence            99999999999999999999999999999999999999999999999999999999998865  8999999999999999


Q ss_pred             CCCCCcCCCCCcccccccccchhhhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhcCC----CcCCCCCC
Q 009153          444 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGR----NVYPVESN  519 (542)
Q Consensus       444 G~~~~~~~~~L~DYA~k~WaGL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~~----~~y~~~p~  519 (542)
                      ||+..+++|+|+|||||+|+|||+|||+|||++||++|.++|++|++|+..+    |+++|++|++++    +.||++|.
T Consensus       810 G~~~~~~~g~l~DYA~k~W~GL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~----~~~~e~~W~~~~~~~~~~yp~~~~  885 (914)
T 4a4a_A          810 GSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNID----WFKMEYDWVNKKSDTDKLYPTEAS  885 (914)
T ss_dssp             SSHHHHTTTSCTTTTCCCCBTHHHHTHHHHHHHHHHHHHHHHTTCSCCCCCC----HHHHHHHHHTCCTTTSCCCCCSCC
T ss_pred             cCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCChHH----HHHHHHHHhccccccCCcCCCCCC
Confidence            9976556689999999999999999999999999999999999999998764    569999999964    89999999


Q ss_pred             -CcHHHHHHHHHHHHh
Q 009153          520 -GDALITSQWLYNKYL  534 (542)
Q Consensus       520 -gd~~~~a~~l~~ky~  534 (542)
                       ||++++|++||+||.
T Consensus       886 g~d~~~~a~~~~~ky~  901 (914)
T 4a4a_A          886 NENLGELAKIAMESYS  901 (914)
T ss_dssp             CCCHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHcc
Confidence             599999999999994
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
d1kwga2393 A4 beta-galactosidase {Thermus thermophilus [TaxId 94.18
d1ceoa_340 Endoglucanase CelC {Clostridium thermocellum [TaxI 93.78
d1qnra_344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 92.19
d1vjza_325 Endoglucanase homologue TM1752 {Thermotoga maritim 86.72
d2pb1a1394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 85.96
d1ecea_358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 81.74
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=94.18  E-value=0.092  Score=48.57  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHH
Q 009153           22 LQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKE  101 (542)
Q Consensus        22 Lq~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~~~~~~~LdP~dplF~~i~~~F~~~q~~~  101 (542)
                      -..++|+.+++.||+||+=-|....|..+.+.+|+.......  +.+   ..+....+.++.+|.+.+..+.|++...+.
T Consensus        52 ~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (393)
T d1kwga2          52 WLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVDRE--GRR---RRFGGRRHYCFSSPVYREEARRIVTLLAER  126 (393)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSTTSCCHHHHHHCGGGSCBCTT--SCB---CCSSSSCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCCCCchhhhccCcccccccCC--Ccc---cccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            446899999999999998888888899999999876444322  111   123345678889999999999999999999


Q ss_pred             hCCCCcccccCCCCCCCCC
Q 009153          102 YGRTSHIYNCDTFDENTPP  120 (542)
Q Consensus       102 yG~~~h~Y~~DpFnE~~p~  120 (542)
                      |+....+...+..||..-.
T Consensus       127 ~~~~~~~~~~~~~ne~~~~  145 (393)
T d1kwga2         127 YGGLEAVAGFQTDNEYGCH  145 (393)
T ss_dssp             HTTCTTEEEEECSSSTTTT
T ss_pred             hcCCceEEEEeeccccccc
Confidence            9865567788888997543
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure