Citrus Sinensis ID: 009185
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZ80 | 539 | Polyol transporter 5 OS=A | yes | no | 0.883 | 0.886 | 0.55 | 1e-154 | |
| Q9XIH6 | 511 | Putative polyol transport | no | no | 0.863 | 0.913 | 0.531 | 1e-141 | |
| Q8GXR2 | 493 | Probable polyol transport | no | no | 0.874 | 0.959 | 0.506 | 1e-140 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.883 | 0.935 | 0.508 | 1e-140 | |
| Q0WUU6 | 526 | Probable polyol transport | no | no | 0.894 | 0.920 | 0.475 | 1e-133 | |
| Q9ZNS0 | 508 | Probable polyol transport | no | no | 0.876 | 0.933 | 0.501 | 1e-131 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.783 | 0.927 | 0.344 | 9e-65 | |
| Q8VZR6 | 509 | Inositol transporter 1 OS | no | no | 0.852 | 0.905 | 0.322 | 3e-59 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.794 | 0.940 | 0.337 | 1e-58 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.774 | 0.908 | 0.333 | 3e-58 |
| >sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/500 (55%), Positives = 354/500 (70%), Gaps = 22/500 (4%)
Query: 38 HKQASEVASQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIR 97
++ A KH +P L K P+ N YA AILAS SILLGYDIGVMSGA++YI+
Sbjct: 8 NRTAPSPPPVKH--VPESVLPAKPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIK 65
Query: 98 DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPS 157
+L I +Q+ +L GSLN+ SLIGS AAG+TSD IGRRYTIVLA A F GA+LMGL+P+
Sbjct: 66 RDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPN 125
Query: 158 FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217
+ FLM GR ++GIGVGY+LMIAPVYT E+SPA +RGFL+S PEVFIN GI+LGY+SN A
Sbjct: 126 YAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAF 185
Query: 218 SGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEA 277
S LP + WRLMLG+ A+P++ +A GV+AMPESPRWLVM+GR DAK+ L KTSDS EA
Sbjct: 186 SNLPLKVGWRLMLGIGAVPSVILAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEA 245
Query: 278 EFRLNEMTRTIADLGHAA-------------SSNNWQGQGVWKELLLRPSRPLRRILIAA 324
RL D+ HAA S N G+GVW+ELL+RP+ +RR++IAA
Sbjct: 246 TLRLE-------DIKHAAGIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAA 298
Query: 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG 384
IG++FF QASG DAVV +SP +FK AG+ + Q + TV +G+ KTSF+L++ LD G
Sbjct: 299 IGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIG 358
Query: 385 RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITW 444
RRPLL+ GM +SLA LG +DQS+ K WA+ + + V V+ FSIG GPITW
Sbjct: 359 RRPLLLTSVGGMVLSLAALGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITW 418
Query: 445 VYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVF 504
VYSSEIFP + R+QGSS+ + VNR+ SG++++SFL +S+A+T GG F++ GI V VF
Sbjct: 419 VYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVF 478
Query: 505 FYFFLPETKGKSLEDIGLLF 524
FY FLPET+G+ LED+ LF
Sbjct: 479 FYTFLPETQGRMLEDMDELF 498
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Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH6|PLT2_ARATH Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/476 (53%), Positives = 338/476 (71%), Gaps = 9/476 (1%)
Query: 58 QRKKPRFNK--YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLN 115
+ + PR N+ +A AILAS SI+LGYDIGVMSGA ++I+D+L ++ +Q+E+L+G LN
Sbjct: 14 ESEPPRGNRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILN 73
Query: 116 VCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYS 175
+ SLIGS AAG+TSD IGRRYTIVLA F GALLMG A ++ F+M GR V+GIGVGY+
Sbjct: 74 IYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYA 133
Query: 176 LMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235
+MIAPVYTTE++PA +RGFLSS PE+FIN GILLGY+SNY + LPEHI WR MLG+ A+
Sbjct: 134 MMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAV 193
Query: 236 PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA------ 289
P++ +A GV+AMPESPRWLVM+GR DA + L KTS++ EEA RLN++ R +
Sbjct: 194 PSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPDDMT 253
Query: 290 DLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKD 349
D + G+GVWK+LL+RP+ +R ILIA +G++F QASG DAVV YSP +F
Sbjct: 254 DDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSR 313
Query: 350 AGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKY 409
AG+ SK + TV +G+ KT F+++ +D FGRR LL+ GM SL LG
Sbjct: 314 AGLKSKNDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTSLTV 373
Query: 410 LDQSDIKP-AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNR 468
+D++ + WAI L V V V+ FS+G GP+TWVY+SEIFP + RAQG+SL + +NR
Sbjct: 374 IDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNR 433
Query: 469 LVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF 524
L+SGI+ M+FLS+S+ +T GG F + +G+ VFF+ FLPET+G LE+I LF
Sbjct: 434 LMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLF 489
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/484 (50%), Positives = 342/484 (70%), Gaps = 11/484 (2%)
Query: 59 RKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCS 118
K N++AL AI+AS SI+ GYD GVMSGA+++I ++L +Q+EVL G LN+C+
Sbjct: 8 EKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCA 67
Query: 119 LIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMI 178
L+GSL AG+TSD IGRRYTIVLA+ F+LG++LMG P++ L++GR +G+GVG++LM+
Sbjct: 68 LVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMV 127
Query: 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238
APVY+ EI+ A RG L+SLP + I+ GILLGYI NY S LP HI WRLMLG+AA+P++
Sbjct: 128 APVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSL 187
Query: 239 AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMT-------RTIADL 291
+AFG++ MPESPRWL+M+GR + K+ L S+S EEAE R ++ + + D+
Sbjct: 188 VLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDV 247
Query: 292 GHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG 351
G+GVWKEL+LRP+ +RR+L+ A+G++FF ASG +AV+ Y P +FK AG
Sbjct: 248 VKMEGKKT-HGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAG 306
Query: 352 INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLD 411
I +K +L VT+ +GI KT+F+ + L LD GRR LL+ GM ++L +LG G
Sbjct: 307 ITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFGLTMAQ 366
Query: 412 QSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471
+ K AWA+ L ++A + V+FFSIGLGPITWVYSSE+FP K RAQG+SL ++VNR+++
Sbjct: 367 NAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMN 426
Query: 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFE---DKA 528
V+MSFLS++ A+T GG FF+ +G+ AV FF+F LPETKGKSLE+I LF+ DK
Sbjct: 427 ATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQRDGDKV 486
Query: 529 HDNH 532
+
Sbjct: 487 RGEN 490
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1280), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/496 (50%), Positives = 344/496 (69%), Gaps = 18/496 (3%)
Query: 58 QRKKPRFNK--YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLN 115
+ + PR N+ YA AILAS SI+LGYDIGVMSGA ++I+D+L ++ +Q+E+L+G LN
Sbjct: 14 ESEPPRGNRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILN 73
Query: 116 VCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYS 175
+ SL+GS AAG+TSD +GRRYTIVLA A F GALLMG A ++ F+M GR V+GIGVGY+
Sbjct: 74 IYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYA 133
Query: 176 LMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235
+MIAPVYT E++PA +RGFL+S PE+FIN GILLGY+SNY S LPEH+ WR MLG+ A+
Sbjct: 134 MMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAV 193
Query: 236 PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA------ 289
P++ +A GV+AMPESPRWLV++GR DA + L KTS++ EEA RL+++ R +
Sbjct: 194 PSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDDMT 253
Query: 290 DLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKD 349
D + G+GVWK+LL+RP+ +R ILIA +G++F QASG DAVV YSP +F
Sbjct: 254 DDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSK 313
Query: 350 AGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKY 409
AG+ SK + TV +G+ KT F+++ +D FGRR LL+ GM +SL LG
Sbjct: 314 AGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTSLTV 373
Query: 410 LDQSDIKP-AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNR 468
++++ + WAI L V V V+ FSIG GP+TWVY SEIFP + RAQG+SL + +NR
Sbjct: 374 INRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNR 433
Query: 469 LVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF---- 524
L+SGI+ M+FLS+S+ +T GG F + +G+ A VFF+ FLPET+G LE++ LF
Sbjct: 434 LMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLFGSYT 493
Query: 525 -----EDKAHDNHTLD 535
+ DN +D
Sbjct: 494 ANKKNNSMSKDNEVVD 509
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Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/503 (47%), Positives = 335/503 (66%), Gaps = 19/503 (3%)
Query: 24 PAAKEGQRRHEELWHKQASEVA-SQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILL 82
PA G ++++ + + S+ SQ H + + + R KY + A AS N++LL
Sbjct: 17 PAVSVGNKKNK--YQRMDSDAEESQNHREA-----EARNSRTRKYVMACAFFASLNNVLL 69
Query: 83 GYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAA 142
GYD+GVMSGA+L+I+ +L IT +Q EVL+GSL++ SL GSLA G+TSD IGR++T+ LAA
Sbjct: 70 GYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAA 129
Query: 143 ATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVF 202
F GA +M +APSF LM GR ++GIG+G +MIAPVY EISP + RGF +S PE+F
Sbjct: 130 LVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIF 189
Query: 203 INFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFAD 262
IN GILLGY+SNYA SGL HI+WR+ML + LP++ + F + +PESPRWLVMKGR
Sbjct: 190 INLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDS 249
Query: 263 AKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILI 322
A++ L+KT++ +EAE RL E+ AA + + + VW+E LL PS +R++LI
Sbjct: 250 AREVLMKTNERDDEAEERLAEIQLA------AAHTEGSEDRPVWRE-LLSPSPVVRKMLI 302
Query: 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382
G+ F Q +G DA VYYSPE+ K+AGI + +L+ TV +G+ KT F+L + +D
Sbjct: 303 VGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDS 362
Query: 383 FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPI 442
GR+PLL + + GM + L L +L Q + I L ++ VC V+FFSIG+GP+
Sbjct: 363 VGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTL----GITLALLFVCGNVAFFSIGMGPV 418
Query: 443 TWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGT 502
WV +SEIFP + RAQ S+L NR+ SG+VAMSFLS+SRA+T GG FF+ S ++A+
Sbjct: 419 CWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSV 478
Query: 503 VFFYFFLPETKGKSLEDIGLLFE 525
+F Y +PET GKSLE I L+F+
Sbjct: 479 IFVYVLVPETSGKSLEQIELMFQ 501
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/483 (50%), Positives = 336/483 (69%), Gaps = 9/483 (1%)
Query: 49 HTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVE 108
H D P NK+A AI+AS SI+ GYD GVMSGA ++IRD+L I Q+E
Sbjct: 3 HADGHNFPGSDPNPHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIE 62
Query: 109 VLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVS 168
VL G LN+C+L+GSL AGKTSD IGRRYTI L+A FL+G++LMG P++ LM GR ++
Sbjct: 63 VLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIA 122
Query: 169 GIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRL 228
G+GVG++LMIAPVY+ EIS A RGFL+SLPE+ I+ GILLGY+SNY L + WRL
Sbjct: 123 GVGVGFALMIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRL 182
Query: 229 MLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEM---- 284
MLG+AA P++ +AFG+ MPESPRWLVM+GR +AK+ ++ S++ EEAE R ++
Sbjct: 183 MLGIAAFPSLILAFGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAA 242
Query: 285 ---TRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVY 341
I ++G N G+ VW+EL+++P +R ILIAA+G++FF A+G +AVV
Sbjct: 243 EVDVTEIKEVGGGVKKKN-HGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVL 301
Query: 342 YSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401
YSP +FK AG+ SK +L+ TV +G+ K F++I+ LD GRR LL+ + GM +L
Sbjct: 302 YSPRIFKKAGVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALT 361
Query: 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSS 461
L + S + Q + AWA++L +++ A V+FFSIGLGPITWVYSSEIFP + RAQG+S
Sbjct: 362 SLAV-SLTMVQRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGAS 420
Query: 462 LAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIG 521
+ ++VNR+++ V+MSFLS+++A+T GG+FF+ +GI FF+F LPETKG LE++
Sbjct: 421 IGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEME 480
Query: 522 LLF 524
LF
Sbjct: 481 KLF 483
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 247/447 (55%), Gaps = 23/447 (5%)
Query: 81 LLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVL 140
L GYD GV+SGAIL+++ L + + ++V SL V +++GS AAGK +D GR+ I+
Sbjct: 19 LYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMA 78
Query: 141 AAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPE 200
AA F +G L + LAP+ ++ R++ G+ VG S I P+Y +E++P RG LSSL +
Sbjct: 79 AALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQ 138
Query: 201 VFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRF 260
+ I GILL YI NY + + WR MLGLAA+P++ + G++ MPESPRWL G
Sbjct: 139 LMITVGILLSYIVNYIFA---DAEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195
Query: 261 ADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRI 320
+ AK+ L K + ++ + I D+ A Q +G KEL RP
Sbjct: 196 SKAKKILEKLRGT--------KDIDQEIHDIKEAEK----QDEGGLKELFDPWVRP---A 240
Query: 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYL 380
LIA +G+ F Q G + ++YY+P+ F + G + ++G TV +G L++ +
Sbjct: 241 LIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILG-TVGIGTVNVLMTLVAIKII 299
Query: 381 DHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLG 440
D GR+PLL+ G+ GM +SL VL L + + D + +W +C + + F++ G
Sbjct: 300 DKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTP-AASWTTVIC---LGVFIVVFAVSWG 355
Query: 441 PITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAV 500
P+ WV E+FP R G+ ++ + + + IV++++ + A+ +F I + I +
Sbjct: 356 PVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIM 415
Query: 501 GTVFFYFFLPETKGKSLEDIGLLFEDK 527
+F F + ETKG+SLE+I DK
Sbjct: 416 AFLFVRFKVTETKGRSLEEIEQDLRDK 442
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 262/480 (54%), Gaps = 19/480 (3%)
Query: 58 QRKKPRF-NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNI---TSIQVEVLVGS 113
+R+ F N Y L + A +L GYD GV+SGA+LYI+D+ + +S E +V
Sbjct: 20 ERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSM 79
Query: 114 LNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVG 173
V ++IG+ A G +D GR+ + A F GA++M AP L++GR++ G+GVG
Sbjct: 80 ALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVG 139
Query: 174 YSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA 233
+ + APVY E SP+ RG L S + I G L Y+ N A + +P WR MLG++
Sbjct: 140 VASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPG--TWRWMLGVS 197
Query: 234 ALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGH 293
+PA+ ++ MPESPRWL MK R A+A Q L +T D + E ++ ++
Sbjct: 198 GVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYD-ISRLEDEIDHLS-------- 248
Query: 294 AASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGIN 353
AA Q + L + S+ LR +A G+ F Q +G + V+YYSP + + AG +
Sbjct: 249 AAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFH 308
Query: 354 SKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQS 413
S + + +++I+ + ++ ++DH GR+ L + G+ +SL +L + + QS
Sbjct: 309 SNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSV--SFFKQS 366
Query: 414 DIKPAWAIA--LCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471
+ + L V+ + + FF+ G+GP+ W +SEI+P ++R ++ +VN + +
Sbjct: 367 ETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISN 426
Query: 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAHDN 531
IVA +FL+I+ A G F IL+GI + +F F+PET+G + ++ +++++A+ N
Sbjct: 427 LIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGN 486
|
Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 244/454 (53%), Gaps = 24/454 (5%)
Query: 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIV 139
+L GYD GV+SGAIL+I+ +N+ S Q +V ++ + +++G+ G +SD GRR ++
Sbjct: 18 LLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLL 77
Query: 140 LAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLP 199
L+A F +GAL +P F L+ R++ G+ VG + + P Y E++P+ RG +SSL
Sbjct: 78 LSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLF 137
Query: 200 EVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGR 259
++ + GILL YI+NY+ SG + WR MLG AA+PA + G + +PESPR+LV G
Sbjct: 138 QLMVMTGILLAYITNYSFSGF--YTGWRWMLGFAAIPAALLFLGGLILPESPRFLVKSGH 195
Query: 260 FADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRR 319
+A+ L + + A + + I D+ +A + G W EL + RP
Sbjct: 196 LDEARHVLDTMNKHDQVA------VNKEINDIQESAKIVS----GGWSELFGKMVRPS-- 243
Query: 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALY 379
LI IG+ F Q G + V+YY+P +F D G L+ + +GI I+
Sbjct: 244 -LIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLA-HIGIGIFNVIVTAIAVAI 301
Query: 380 LDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGL 439
+D R+ ++ +G+ GM +SL V+ +G K+ S A + VIA+ ++FFS
Sbjct: 302 MDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQT----AAIISVIALTVYIAFFSATW 357
Query: 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFG-GMFFILSGIT 498
GP+ WV E+FP R G+S A +N + IV+++F S+ FG G FI GI
Sbjct: 358 GPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLD--FFGTGSLFIGYGIL 415
Query: 499 AVGTVFFY-FFLPETKGKSLEDIGLLFEDKAHDN 531
+++F + ET+ +SLEDI K ++
Sbjct: 416 CFASIWFVQKKVFETRNRSLEDIEATLRAKTGED 449
|
Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 237/441 (53%), Gaps = 22/441 (4%)
Query: 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIV 139
+L GYD GV+SGA+L+I +++ +T++ ++V L + ++ GS +G SD GRR +
Sbjct: 19 LLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVF 78
Query: 140 LAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLP 199
+ + F++GAL + + L+A RV+ G+ VG S + PVY +E++P RG L ++
Sbjct: 79 VLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMN 138
Query: 200 EVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGR 259
+ I GILL YI NY + WR M+GLAA+PA+ + G+ MPESPRWLV +G
Sbjct: 139 NLMIVTGILLAYIVNYLFTPFEA---WRWMVGLAAVPAVLLLIGIAFMPESPRWLVKRGS 195
Query: 260 FADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRR 319
+A++ + T D ++ E L EM + G A GV K +RP
Sbjct: 196 EEEARRIMNITHDP-KDIEMELAEMKQ-----GEAEKKET--TLGVLKAKWIRP------ 241
Query: 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALY 379
+L+ +G+ F QA G + V+YY+P +F AG+ + +G T+ +GI + + +
Sbjct: 242 MLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG-TMGIGILNVIMCITAMIL 300
Query: 380 LDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGL 439
+D GR+ LL+ GS G+ +SLA L G AW + V+ + + F+
Sbjct: 301 IDRVGRKKLLIWGSVGITLSLAALS-GVLLTLGLSASTAW---MTVVFLGVYIVFYQATW 356
Query: 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITA 499
GP+ WV E+FP+K R + V + IV++ F + A+ +F + S I
Sbjct: 357 GPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICL 416
Query: 500 VGTVFFYFFLPETKGKSLEDI 520
+ F ++ +PETKGKSLE+I
Sbjct: 417 LSFFFAFYMVPETKGKSLEEI 437
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| 255546485 | 539 | sugar transporter, putative [Ricinus com | 0.981 | 0.985 | 0.740 | 0.0 | |
| 225445240 | 500 | PREDICTED: polyol transporter 5 [Vitis v | 0.896 | 0.97 | 0.725 | 0.0 | |
| 356522722 | 535 | PREDICTED: polyol transporter 5-like [Gl | 0.953 | 0.964 | 0.691 | 0.0 | |
| 255546487 | 507 | sugar transporter, putative [Ricinus com | 0.879 | 0.938 | 0.728 | 0.0 | |
| 356529624 | 543 | PREDICTED: polyol transporter 5-like [Gl | 0.951 | 0.948 | 0.688 | 0.0 | |
| 357500761 | 515 | Myo-inositol transporter [Medicago trunc | 0.841 | 0.883 | 0.718 | 0.0 | |
| 297738827 | 807 | unnamed protein product [Vitis vinifera] | 0.852 | 0.571 | 0.680 | 0.0 | |
| 449527167 | 503 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.918 | 0.988 | 0.644 | 0.0 | |
| 449464678 | 503 | PREDICTED: probable polyol transporter 6 | 0.916 | 0.986 | 0.645 | 0.0 | |
| 357521013 | 498 | Polyol transporter [Medicago truncatula] | 0.852 | 0.925 | 0.672 | 1e-176 |
| >gi|255546485|ref|XP_002514302.1| sugar transporter, putative [Ricinus communis] gi|223546758|gb|EEF48256.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/535 (74%), Positives = 447/535 (83%), Gaps = 4/535 (0%)
Query: 1 MQFSSSHKPDKQDCYYLLLDSESPAAKE---GQRRHEELWHKQASEVASQKHTDLPGVSL 57
MQFSS+ + DK Y+ L D S E R +WHK A+E S KH G
Sbjct: 1 MQFSSTLESDKHGNYHPLPDFASSLPSEIDLKPERRNRVWHKDAAEGESLKHKAALGAPA 60
Query: 58 QRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVC 117
QRK NKYA GA+LASTNS+LLGYDIGVMSGA+LYIRD+L+ITS QVE+LVG LNVC
Sbjct: 61 QRKT-HINKYAFAGAVLASTNSVLLGYDIGVMSGAVLYIRDDLHITSTQVEILVGCLNVC 119
Query: 118 SLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLM 177
SLIGSLA+G+TSD IGRRYTIVLAAATF +GA+LMGLAPSF FLMAGRVV+GIGVGYSLM
Sbjct: 120 SLIGSLASGRTSDYIGRRYTIVLAAATFFIGAILMGLAPSFTFLMAGRVVAGIGVGYSLM 179
Query: 178 IAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPA 237
IAPVYT E+SPA+TRGFLSSLPEVFIN G LLGY+SNYALSGLP NWRLMLGLAA PA
Sbjct: 180 IAPVYTAELSPAITRGFLSSLPEVFINVGALLGYVSNYALSGLPNDKNWRLMLGLAAFPA 239
Query: 238 IAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASS 297
I VA GV+ MPESPRWLVMKGRF DAK+ L +TS+S EEAE RL EM + DL H A+S
Sbjct: 240 IIVALGVMMMPESPRWLVMKGRFGDAKKVLARTSESEEEAELRLTEMIKAAKDLTHGAAS 299
Query: 298 NNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ 357
+NW+GQG W+ELL PSRP+RRILI+AIGVNFFMQASGNDAV+YY+P VFKDAGI S++Q
Sbjct: 300 SNWRGQGAWRELLFEPSRPIRRILISAIGVNFFMQASGNDAVMYYTPAVFKDAGIQSRQQ 359
Query: 358 LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417
LVGVT+IMGIAKT FVL+SAL+LD FGRRPLL+LG+TGMAV+LA LGLGSKYL Q DIKP
Sbjct: 360 LVGVTIIMGIAKTFFVLVSALFLDRFGRRPLLLLGTTGMAVALAALGLGSKYLQQCDIKP 419
Query: 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMS 477
WAIALC++AVCA VSFFSIGLGPITWVYSSEIFP + RAQG+SLAISVNRLVSGIVAM+
Sbjct: 420 LWAIALCIVAVCADVSFFSIGLGPITWVYSSEIFPMRLRAQGTSLAISVNRLVSGIVAMT 479
Query: 478 FLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAHDNH 532
FLSISR ++FGGMFF LSGI VGT+FFYFFLPETKGK+LE+IG LFEDK +N
Sbjct: 480 FLSISRLISFGGMFFALSGILVVGTIFFYFFLPETKGKTLEEIGSLFEDKIPENE 534
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445240|ref|XP_002280978.1| PREDICTED: polyol transporter 5 [Vitis vinifera] gi|310877840|gb|ADP37151.1| putative polyol/monosaccharide transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/489 (72%), Positives = 416/489 (85%), Gaps = 4/489 (0%)
Query: 39 KQASEVASQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRD 98
+Q + V S + RKK NK++L A+LAST SILLGYDIGVMSGA+LYI+D
Sbjct: 7 EQPTVVESHQPQASEAGGASRKKSSLNKFSLVCALLASTCSILLGYDIGVMSGAVLYIKD 66
Query: 99 NLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF 158
++I+S+QVE+LVGSLNVCSLIGSLA+GKTSD IGRRYTIVLAAATFL+GALLM LAPS+
Sbjct: 67 EIHISSVQVEILVGSLNVCSLIGSLASGKTSDLIGRRYTIVLAAATFLIGALLMSLAPSY 126
Query: 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS 218
LFLMAGRVV+GIGVGYSLMIAPVYT E+SPAMTRGFL+SLPEVFI FGILLGYI+NYAL+
Sbjct: 127 LFLMAGRVVAGIGVGYSLMIAPVYTAELSPAMTRGFLTSLPEVFITFGILLGYIANYALA 186
Query: 219 GLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAE 278
GLP INWR+MLG+AA+PAI + VI MPESPRWLVMKGR + AKQ LI+TSD EEAE
Sbjct: 187 GLPPKINWRMMLGIAAVPAIVIGISVIGMPESPRWLVMKGRISQAKQILIRTSDDEEEAE 246
Query: 279 FRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDA 338
RL+E+ R +S W GQGVW ELL RPS+P+RRIL+AAIG+NFFMQASGNDA
Sbjct: 247 LRLSEIMRE----ASTTTSAEWSGQGVWMELLCRPSKPIRRILVAAIGMNFFMQASGNDA 302
Query: 339 VVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398
VVYYSP VF++AGIN ++QLVGVT+IMGI KT+FVL+SAL+LD +GRRPLL+LGS GMAV
Sbjct: 303 VVYYSPAVFENAGINDRRQLVGVTIIMGITKTAFVLVSALFLDRYGRRPLLLLGSIGMAV 362
Query: 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQ 458
SL L LGSKYL+ S+ KP WAIALCV+AVCA VSFFSIGLGPITWVYSSEIFPT+ RAQ
Sbjct: 363 SLGGLALGSKYLEDSEHKPTWAIALCVVAVCADVSFFSIGLGPITWVYSSEIFPTRLRAQ 422
Query: 459 GSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLE 518
G+S+A+SVNRLVSG+VAM+FLSIS+A+TFGGMF + G+ +G++FFYFF+PETKGKSLE
Sbjct: 423 GTSMAVSVNRLVSGVVAMTFLSISKAITFGGMFLVFCGVMVIGSIFFYFFIPETKGKSLE 482
Query: 519 DIGLLFEDK 527
DI LFEDK
Sbjct: 483 DIATLFEDK 491
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522722|ref|XP_003529995.1| PREDICTED: polyol transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/531 (69%), Positives = 430/531 (80%), Gaps = 15/531 (2%)
Query: 11 KQDCYYLLLDS----ESPAAKEGQRRHEELWHKQASEVASQKHTDLPGVSLQRKKPRFNK 66
+ CYY L S + P +G++ EE ++ S Q +T VS Q KPR N+
Sbjct: 8 EHHCYYPLPASAAKADHPNHNDGEK--EETCAEEGSS-QHQPNTSQNCVSYQSNKPRLNR 64
Query: 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAG 126
YAL GAILASTNSILLGYDIGVMSGA L IR +L ITS+QVE+LVG LNVCSLIGSLA+G
Sbjct: 65 YALGGAILASTNSILLGYDIGVMSGASLLIRQDLKITSVQVEILVGCLNVCSLIGSLASG 124
Query: 127 KTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEI 186
KTSD IGRRYTI++AAATFL+GA+LMGLAPSF FLMAGRVV+GIGVGYSLMI+PVY E+
Sbjct: 125 KTSDWIGRRYTIMVAAATFLIGAILMGLAPSFPFLMAGRVVAGIGVGYSLMISPVYVAEL 184
Query: 187 SPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA 246
SPA+TRGFL+SLPEVFI+ GILLGY+SNYA SGLP INWRLMLGLAALP+IAVA GV+A
Sbjct: 185 SPALTRGFLTSLPEVFISVGILLGYVSNYAFSGLPNGINWRLMLGLAALPSIAVALGVLA 244
Query: 247 MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTR------TIADLGHAASSN-N 299
MPESPRWLV+KGRF +AKQ LI+TS++ EAE RL E+ +I ++ A +S+ +
Sbjct: 245 MPESPRWLVVKGRFEEAKQVLIRTSENKGEAELRLAEIQEAAAASASITNMDKATTSDGS 304
Query: 300 WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLV 359
+ GQGVWKELL+ P+ P+ RIL+ AIGVNFFMQASGNDAV+YYSPEVFK+AGI +KQL
Sbjct: 305 FNGQGVWKELLVTPTSPVLRILVVAIGVNFFMQASGNDAVMYYSPEVFKEAGIKDEKQLF 364
Query: 360 GVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQS-DIKPA 418
GVT+IMGIAKT FVLISAL+LD GRRP+L+LGS GMA+SL VLGLG L S D K
Sbjct: 365 GVTIIMGIAKTCFVLISALFLDPVGRRPMLLLGSCGMAISLFVLGLGCTLLKLSGDNKDE 424
Query: 419 WAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478
W IALCV+AVCA VSFFSIGLGP TWVYSSEIFP + RAQGSSLAISVNRL+SGIV+M+F
Sbjct: 425 WVIALCVVAVCATVSFFSIGLGPTTWVYSSEIFPLRLRAQGSSLAISVNRLMSGIVSMTF 484
Query: 479 LSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAH 529
LS+S A+TFGGMFF+L G+ T+FFYFFLPETKGKSLE+I LFED+AH
Sbjct: 485 LSVSEAITFGGMFFVLCGVMVCATLFFYFFLPETKGKSLEEIEALFEDQAH 535
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546487|ref|XP_002514303.1| sugar transporter, putative [Ricinus communis] gi|223546759|gb|EEF48257.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/479 (72%), Positives = 414/479 (86%), Gaps = 3/479 (0%)
Query: 60 KKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSL 119
KK R N YA A+LASTNSILLGYDIGVMSGA+L+IR+NL ITS QVE+LVG LNVCSL
Sbjct: 21 KKTRLNIYAFGCALLASTNSILLGYDIGVMSGAVLFIRENLKITSTQVEILVGILNVCSL 80
Query: 120 IGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIA 179
IGSLA+GKTSD IGRRYTIVLAAATFL+GALLMGLAPS+ FL+AGRVV+GIGVGYSLMIA
Sbjct: 81 IGSLASGKTSDYIGRRYTIVLAAATFLIGALLMGLAPSYPFLVAGRVVAGIGVGYSLMIA 140
Query: 180 PVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239
PVY+ E+SPAMTRGFL+SLPEVFI FGILLGYI NYALSGLP HINWR+MLGLAA+P+I
Sbjct: 141 PVYSAELSPAMTRGFLTSLPEVFIVFGILLGYILNYALSGLPIHINWRVMLGLAAIPSIL 200
Query: 240 VAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGH---AAS 296
+ GVIAMPESPRWLV++GR +AK+ L+K SDS EEAE RL E+T+ + LG+ +
Sbjct: 201 IGVGVIAMPESPRWLVIQGRVDEAKRVLVKVSDSTEEAESRLAEITQAASSLGNREEGSG 260
Query: 297 SNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKK 356
S++W GQGVWKELLLRPSRP+RR+L+AAIG+NFFMQASGNDAV+YY PEVFK AGI+ KK
Sbjct: 261 SSSWHGQGVWKELLLRPSRPVRRMLVAAIGINFFMQASGNDAVIYYCPEVFKAAGIHKKK 320
Query: 357 QLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIK 416
L GV VIMG++KT FVL+SALYLD FGRRPLL+LG++GMAVSL LG GSK+L+ D +
Sbjct: 321 VLFGVNVIMGLSKTFFVLVSALYLDRFGRRPLLLLGTSGMAVSLVALGSGSKFLENPDHR 380
Query: 417 PAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476
P WAI +C++AVCA VS FSIGLGPITWVYSSEIFP + RAQGS LAISVNRLVSG+V+M
Sbjct: 381 PLWAIVMCIVAVCAFVSCFSIGLGPITWVYSSEIFPLRLRAQGSGLAISVNRLVSGVVSM 440
Query: 477 SFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAHDNHTLD 535
+FL++++ +TFGG+FF+L+GI VGT+FFY ++PETKGK+LE+IG LFEDKA + D
Sbjct: 441 TFLTLAKKITFGGVFFVLAGIMVVGTLFFYVYMPETKGKTLEEIGSLFEDKAGCSEAGD 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529624|ref|XP_003533389.1| PREDICTED: polyol transporter 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/533 (68%), Positives = 426/533 (79%), Gaps = 18/533 (3%)
Query: 15 YYLLLDSESPAAKEGQRRHEELWHKQ---ASEVASQ--KHTDLPGVSLQRKKPRFNKYAL 69
YY L + S AA+ + K+ A E SQ +T VS Q + R N YAL
Sbjct: 11 YYYPLPASSAAAEADHPNNHNDGDKEETCAEEGRSQYKPNTSQNYVSYQSNRSRLNGYAL 70
Query: 70 TGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTS 129
GAILASTNSILLGYDIGVMSGA L+IR +L ITS+QVE+LVGSLNVCSLIGSLA+GKTS
Sbjct: 71 CGAILASTNSILLGYDIGVMSGASLFIRQDLKITSVQVEILVGSLNVCSLIGSLASGKTS 130
Query: 130 DCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPA 189
D IGRRYTI++AAATFL+GA+LMGLAPSF FLMAGRVV+GIGVGYSLMI+PVY E+SPA
Sbjct: 131 DWIGRRYTIMVAAATFLIGAILMGLAPSFPFLMAGRVVAGIGVGYSLMISPVYVAELSPA 190
Query: 190 MTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPE 249
+TRGFL+SLPEVFI+ GILLGY+SNYA +GLP INWRLMLGLAALPAIAVA GV+ MPE
Sbjct: 191 LTRGFLTSLPEVFISVGILLGYVSNYAFAGLPNGINWRLMLGLAALPAIAVALGVLGMPE 250
Query: 250 SPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA-----DLGHAASSNN----- 299
SPRWLV+KGRF +AKQ LI+TS++ EAE RL E+ A ++ A +S+
Sbjct: 251 SPRWLVVKGRFEEAKQVLIRTSENKGEAELRLAEIQEAAASAFFTNIDKATTSSRASPTT 310
Query: 300 --WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ 357
W GQGVWKELL+ P+ + RIL+AAIGVNFFMQASGNDAV+YYSPEVFK+AGI +KQ
Sbjct: 311 RMWHGQGVWKELLVTPTHTVLRILVAAIGVNFFMQASGNDAVIYYSPEVFKEAGIEGEKQ 370
Query: 358 LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQS-DIK 416
L GVT+IMGIAKT FVLISAL+LD FGRRP+L+LGS GMA+SL VLGLG L S D K
Sbjct: 371 LFGVTIIMGIAKTCFVLISALFLDKFGRRPMLLLGSCGMAISLFVLGLGCTLLKLSGDNK 430
Query: 417 PAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476
W IALCV+AVCA VSFFSIGLGPITWVYSSEIFP + RAQGSSLAIS+NRL+SGIV+M
Sbjct: 431 DEWVIALCVVAVCATVSFFSIGLGPITWVYSSEIFPLRLRAQGSSLAISMNRLMSGIVSM 490
Query: 477 SFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAH 529
+FLS+S A+TFGGMFF+L G+ T+FFYFFLPETKGKSLE+I LFED+AH
Sbjct: 491 TFLSVSEAITFGGMFFVLGGVMVCATLFFYFFLPETKGKSLEEIEALFEDQAH 543
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500761|ref|XP_003620669.1| Myo-inositol transporter [Medicago truncatula] gi|355495684|gb|AES76887.1| Myo-inositol transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/459 (71%), Positives = 395/459 (86%), Gaps = 4/459 (0%)
Query: 58 QRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVC 117
+ K NKYAL GAILASTNSILLGYDIGVMSGA++YIR +L I+S+QVE+LVG LNVC
Sbjct: 48 KNKVYHLNKYALAGAILASTNSILLGYDIGVMSGAVIYIRKDLKISSVQVEILVGCLNVC 107
Query: 118 SLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLM 177
SLIGSL +GK SD IGRRYTI++AA TFL+GALLMGLAPSF FLM GRV++GIGVG+SLM
Sbjct: 108 SLIGSLVSGKISDMIGRRYTIMIAALTFLIGALLMGLAPSFTFLMFGRVIAGIGVGFSLM 167
Query: 178 IAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPA 237
I+PVY E+SP +TRGFL+SLPEVFI+FGILLGY+SNYALS LP +NWR+MLG+AALPA
Sbjct: 168 ISPVYVAELSPDLTRGFLTSLPEVFISFGILLGYVSNYALSSLPIGLNWRIMLGIAALPA 227
Query: 238 IAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASS 297
I VA GV+AMPESPRWLVMKG+ +AKQ LI+TS + EAEFRL+E+++ + +S+
Sbjct: 228 ILVALGVLAMPESPRWLVMKGKLEEAKQVLIRTSSNKGEAEFRLSEISQAATN----SST 283
Query: 298 NNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ 357
++ GQGVWKELL+ P+RP+ RILIAA+G+NFFMQASGNDAV+YYSPEVF++AG+ +KQ
Sbjct: 284 SSRHGQGVWKELLITPTRPVLRILIAAVGINFFMQASGNDAVIYYSPEVFREAGVKGEKQ 343
Query: 358 LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417
L GVT+IMGIAKT FVL SAL LD FGRRP+L+LGS+GMAVSL LG+G L SD KP
Sbjct: 344 LFGVTIIMGIAKTCFVLFSALVLDRFGRRPMLLLGSSGMAVSLFGLGMGCTLLHNSDEKP 403
Query: 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMS 477
WAIALCV+AVCAAVSFFSIGLGP TWVYSSEIFP + RAQG+SLAISVNRL+SG+V+MS
Sbjct: 404 MWAIALCVVAVCAAVSFFSIGLGPTTWVYSSEIFPMRLRAQGTSLAISVNRLISGVVSMS 463
Query: 478 FLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKS 516
FLSIS +TFGGMFF+L+G+ + T+FFY+FLPETKGKS
Sbjct: 464 FLSISEEITFGGMFFVLAGVMVLATLFFYYFLPETKGKS 502
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738827|emb|CBI28072.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/489 (68%), Positives = 393/489 (80%), Gaps = 28/489 (5%)
Query: 39 KQASEVASQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRD 98
+Q + V S + RKK NK++L A+LAST SILLGYDIGVMSGA+LYI+D
Sbjct: 7 EQPTVVESHQPQASEAGGASRKKSSLNKFSLVCALLASTCSILLGYDIGVMSGAVLYIKD 66
Query: 99 NLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF 158
++I+S+QVE+LVGSLNVCSLIGSLA+GKTSD IGRRYTIVLAAATFL+GALLM LAPS+
Sbjct: 67 EIHISSVQVEILVGSLNVCSLIGSLASGKTSDLIGRRYTIVLAAATFLIGALLMSLAPSY 126
Query: 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS 218
LFLMAGRVV+GIGVGYSLMIAPVYT E+SPAMTRGFL+SLPEVFI FGILLGYI+NYAL+
Sbjct: 127 LFLMAGRVVAGIGVGYSLMIAPVYTAELSPAMTRGFLTSLPEVFITFGILLGYIANYALA 186
Query: 219 GLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAE 278
GLP INWR+MLG+AA+PAI + VI MPESPRWLVMKGR + AKQ LI+TSD EEAE
Sbjct: 187 GLPPKINWRMMLGIAAVPAIVIGISVIGMPESPRWLVMKGRISQAKQILIRTSDDEEEAE 246
Query: 279 FRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDA 338
RL+E+ R +S W GQGVW ELL RPS+P+RRIL+AAIG+NFFMQASGNDA
Sbjct: 247 LRLSEIMRE----ASTTTSAEWSGQGVWMELLCRPSKPIRRILVAAIGMNFFMQASGNDA 302
Query: 339 VVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398
VVYYSP VF++AGIN ++QLVGVT+IMGI KT+FVL+SAL+LD +GRRPLL+LGS GMAV
Sbjct: 303 VVYYSPAVFENAGINDRRQLVGVTIIMGITKTAFVLVSALFLDRYGRRPLLLLGSIGMAV 362
Query: 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQ 458
SL L LGSKYL+ S+ KP WAIALCV IFPT+ RAQ
Sbjct: 363 SLGGLALGSKYLEDSEHKPTWAIALCV------------------------IFPTRLRAQ 398
Query: 459 GSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLE 518
G+S+A+SVNRLVSG+VAM+FLSIS+A+TFGGMF + G+ +G++FFYFF+PETKGKSLE
Sbjct: 399 GTSMAVSVNRLVSGVVAMTFLSISKAITFGGMFLVFCGVMVIGSIFFYFFIPETKGKSLE 458
Query: 519 DIGLLFEDK 527
DI LFEDK
Sbjct: 459 DIATLFEDK 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527167|ref|XP_004170584.1| PREDICTED: LOW QUALITY PROTEIN: probable polyol transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/506 (64%), Positives = 408/506 (80%), Gaps = 9/506 (1%)
Query: 31 RRHEELWHKQASEVASQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMS 90
+ E +++A+ V + + D +Q NKY L +ILASTNSILLGYDIGVMS
Sbjct: 4 KESNESLYREATAVEAIEEED-QRFKMQSMGFGINKYTLFCSILASTNSILLGYDIGVMS 62
Query: 91 GAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL 150
GA+LYI +NLNI+S QVE+LVGSLN+ SLIGSLA+G+TSD IGRRYT +LA+ TFL+GA+
Sbjct: 63 GAVLYIEENLNISSTQVEILVGSLNILSLIGSLASGRTSDSIGRRYTTLLASTTFLIGAI 122
Query: 151 LMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLG 210
LMGLAPS+ L+AGR+++GIGVGY+LM+APVY E+SP+ +RG LSSLPE+FI FGIL+G
Sbjct: 123 LMGLAPSYPLLLAGRMIAGIGVGYALMVAPVYIAELSPSTSRGLLSSLPEIFITFGILIG 182
Query: 211 YISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKT 270
YI NYALSGLP HINWR+MLGLA +PA+AV GV+ MPESPRWL+MKG+ AK+ L+K
Sbjct: 183 YIINYALSGLPPHINWRIMLGLAGIPALAVGLGVLTMPESPRWLIMKGKSEQAKEVLLKI 242
Query: 271 SDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFF 330
S + EAE RL +T G AA+ + W GQGVWKELL++P++P+RR+LIAAIG+NFF
Sbjct: 243 SSNEIEAEERLRSIT------GAAAAGSGWHGQGVWKELLIKPTKPIRRMLIAAIGINFF 296
Query: 331 MQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390
MQASGNDAV+YYSPEVF+ AGI+ K+ L GV V+MGI KT FV++SA+YLD FGRRPLL+
Sbjct: 297 MQASGNDAVMYYSPEVFRAAGIHEKRHLFGVNVVMGITKTCFVVLSAVYLDRFGRRPLLL 356
Query: 391 LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEI 450
LGS GM V+LA+LGLGSK ++ +P W +A+ VIA+C V+ FSIGLGPITWVYSSEI
Sbjct: 357 LGSIGMTVALALLGLGSKVXEKGKGRPRWGVAVSVIALCCDVALFSIGLGPITWVYSSEI 416
Query: 451 FPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510
FP + RAQGSSLAISVNRLVSGIV+M+FL+IS+ +TFGGMF +LSGI AV ++FFYFFLP
Sbjct: 417 FPNRMRAQGSSLAISVNRLVSGIVSMTFLTISKEITFGGMFLVLSGIMAVASLFFYFFLP 476
Query: 511 ETKGKSLEDIGLLFEDKAHDNHTLDR 536
ETKGKSLE++ +LF+DK N T D
Sbjct: 477 ETKGKSLEEMEVLFQDKV--NSTTDN 500
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464678|ref|XP_004150056.1| PREDICTED: probable polyol transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/505 (64%), Positives = 407/505 (80%), Gaps = 9/505 (1%)
Query: 31 RRHEELWHKQASEVASQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMS 90
+ E +++A+ V + + D +Q NKY L +ILASTNSILLGYDIGVMS
Sbjct: 4 KESNESLYREATAVEAIEEED-QRFKMQSMGFGINKYTLFCSILASTNSILLGYDIGVMS 62
Query: 91 GAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL 150
GA+LYI +NLNI+S QVE+LVGSLN+ SLIGSLA+G+TSD IGRRYT +LA+ TFL+GA+
Sbjct: 63 GAVLYIEENLNISSTQVEILVGSLNILSLIGSLASGRTSDSIGRRYTTLLASTTFLIGAI 122
Query: 151 LMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLG 210
LMGLAPS+ L+AGR+++GIGVGY+LM+APVY E+SP+ +RG LSSLPE+FI FGIL+G
Sbjct: 123 LMGLAPSYPLLLAGRMIAGIGVGYALMVAPVYIAELSPSTSRGLLSSLPEIFITFGILIG 182
Query: 211 YISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKT 270
YI NYALSGLP HINWR+MLGLA +PA+AV GV+ MPESPRWL+MKG+ AK+ L+K
Sbjct: 183 YIINYALSGLPPHINWRIMLGLAGIPALAVGLGVLTMPESPRWLIMKGKSEQAKEVLLKI 242
Query: 271 SDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFF 330
S + EAE RL +T G AA+ + W GQGVWKELL++P++P+RR+LIAAIG+NFF
Sbjct: 243 SSNEIEAEERLRSIT------GAAAAGSGWHGQGVWKELLIKPTKPIRRMLIAAIGINFF 296
Query: 331 MQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390
MQASGNDAV+YYSPEVF+ AGI+ K+ L GV V+MGI KT FV++SA+YLD FGRRPLL+
Sbjct: 297 MQASGNDAVMYYSPEVFRAAGIHEKRHLFGVNVVMGITKTCFVVLSAVYLDRFGRRPLLL 356
Query: 391 LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEI 450
LGS GM V+LA+LGLGSK + +P W +A+ VIA+C V+ FSIGLGPITWVYSSEI
Sbjct: 357 LGSIGMTVALALLGLGSKVTKKGKGRPRWGVAVSVIALCCDVALFSIGLGPITWVYSSEI 416
Query: 451 FPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510
FP + RAQGSSLAISVNRLVSGIV+M+FL+IS+ +TFGGMF +LSGI AV ++FFYFFLP
Sbjct: 417 FPNRMRAQGSSLAISVNRLVSGIVSMTFLTISKEITFGGMFLVLSGIMAVASLFFYFFLP 476
Query: 511 ETKGKSLEDIGLLFEDKAHDNHTLD 535
ETKGKSLE++ +LF+DK N T D
Sbjct: 477 ETKGKSLEEMEVLFQDKV--NSTTD 499
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521013|ref|XP_003630795.1| Polyol transporter [Medicago truncatula] gi|355524817|gb|AET05271.1| Polyol transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 312/464 (67%), Positives = 386/464 (83%), Gaps = 3/464 (0%)
Query: 63 RFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGS 122
R N+Y L A+L+STNSILLGYDIGVMSGA + I++NL I+ IQ E+LVGSLN+CSLIGS
Sbjct: 13 RINRYTLLCALLSSTNSILLGYDIGVMSGASMLIKENLKISRIQQEILVGSLNLCSLIGS 72
Query: 123 LAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVY 182
LA+GKTSD IGRRYTIVLAAATFL+GA+ M LAPSFLF++ GR+++GIGVGY+LMI+P+Y
Sbjct: 73 LASGKTSDTIGRRYTIVLAAATFLIGAIFMSLAPSFLFILTGRMIAGIGVGYALMISPLY 132
Query: 183 TTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF 242
T E+SP TRGFL+SLPEVFI GIL+GY+ NYAL+ LP ++ WR+ML ++ALPAI +AF
Sbjct: 133 TAELSPTTTRGFLTSLPEVFITLGILIGYVINYALTDLPINLGWRIMLAISALPAILIAF 192
Query: 243 GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQG 302
GVI MPESP WLV KGR ++AK+ L+ S + EEAE RL E+ + DL H NW G
Sbjct: 193 GVIFMPESPHWLVFKGRVSEAKRVLLSLSTTPEEAELRLQEIVKNKNDLAHGP--GNWIG 250
Query: 303 QGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVT 362
QGVWKEL LRPS+P++R+LI+AIG+NFFMQASGNDAV+YYSPEVFK AGI+ KK+L GV
Sbjct: 251 QGVWKELFLRPSKPIKRMLISAIGINFFMQASGNDAVIYYSPEVFKAAGIHGKKKLFGVN 310
Query: 363 VIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIA 422
VIMG++K+ FV +SA+YLD FGRRPLL++GS GMAVSL LG GSK L+ S KP WA+
Sbjct: 311 VIMGLSKSFFVFLSAIYLDKFGRRPLLLIGSFGMAVSLFGLGFGSKILEGSG-KPVWAVV 369
Query: 423 LCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSIS 482
+C++AVCA VSFFSIGLGPITWVYSSEIFP + RAQGSS+AISVNRLVSG+V+M+FLSIS
Sbjct: 370 VCIVAVCADVSFFSIGLGPITWVYSSEIFPMRLRAQGSSIAISVNRLVSGVVSMTFLSIS 429
Query: 483 RAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFED 526
+ +TFGGMFF+L+GI T F+Y +PETKGK+LE++ LF +
Sbjct: 430 KKITFGGMFFVLAGIMVAATGFYYVSMPETKGKTLEEMETLFVE 473
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| TAIR|locus:2094034 | 539 | PMT5 "polyol/monosaccharide tr | 0.878 | 0.881 | 0.519 | 2.1e-125 | |
| TAIR|locus:2052971 | 511 | PMT2 "polyol/monosaccharide tr | 0.868 | 0.919 | 0.478 | 2.4e-115 | |
| TAIR|locus:2052956 | 511 | PMT1 "polyol/monosaccharide tr | 0.868 | 0.919 | 0.467 | 1.2e-113 | |
| TAIR|locus:2115415 | 493 | PMT6 "polyol/monosaccharide tr | 0.859 | 0.943 | 0.470 | 2.2e-112 | |
| TAIR|locus:2051443 | 526 | AT2G20780 [Arabidopsis thalian | 0.894 | 0.920 | 0.437 | 3.4e-109 | |
| TAIR|locus:2046333 | 508 | AT2G18480 [Arabidopsis thalian | 0.852 | 0.907 | 0.468 | 4.3e-109 | |
| TAIR|locus:2058193 | 509 | INT1 "inositol transporter 1" | 0.852 | 0.905 | 0.297 | 2.8e-57 | |
| RGD|621814 | 637 | Slc2a13 "solute carrier family | 0.726 | 0.616 | 0.276 | 2e-56 | |
| UNIPROTKB|F1PGX9 | 652 | SLC2A13 "Uncharacterized prote | 0.624 | 0.518 | 0.282 | 5.7e-56 | |
| MGI|MGI:2146030 | 637 | Slc2a13 "solute carrier family | 0.726 | 0.616 | 0.274 | 7.8e-56 |
| TAIR|locus:2094034 PMT5 "polyol/monosaccharide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 251/483 (51%), Positives = 319/483 (66%)
Query: 48 KHTDLPGVSLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQV 107
KH +P L K P+ N YA AILAS SILLGYDIGVMSGA++YI+ +L I +Q+
Sbjct: 18 KH--VPESVLPAKPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQI 75
Query: 108 EVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVV 167
+L GSLN+ SLIGS AAG+TSD IGRRYTIV P++ FLM GR +
Sbjct: 76 GILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFI 135
Query: 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWR 227
+GIGVGY+LMIAPVYT E+SPA +RGFL+S PEVFIN GI+LGY+SN A S LP + WR
Sbjct: 136 AGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWR 195
Query: 228 LMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRT 287
LMLG+ A+P++ +A GV+AMPESPRWLVM+GR DAK+ L KTSDS EA RL ++
Sbjct: 196 LMLGIGAVPSVILAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHA 255
Query: 288 I---ADLGH---AASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVY 341
AD S N G+GVW+E AAIG++FF QASG DAVV
Sbjct: 256 AGIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVL 315
Query: 342 YSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401
+SP +FK AG+ + Q + TV +G+ KTSF+L++ LD GRRPLL+ GM +SLA
Sbjct: 316 FSPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLA 375
Query: 402 VLGLGSKYLDQSDIKPXXXXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSS 461
LG +DQS+ K + FSIG GPITWVYSSEIFP + R+QGSS
Sbjct: 376 ALGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSS 435
Query: 462 LAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIG 521
+ + VNR+ SG++++SFL +S+A+T GG F++ GI V VFFY FLPET+G+ LED+
Sbjct: 436 MGVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMD 495
Query: 522 LLF 524
LF
Sbjct: 496 ELF 498
|
|
| TAIR|locus:2052971 PMT2 "polyol/monosaccharide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 229/479 (47%), Positives = 312/479 (65%)
Query: 55 VSLQRKKPRFNK--YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVG 112
V + + PR N+ +A AILAS SI+LGYDIGVMSGA ++I+D+L ++ +Q+E+L+G
Sbjct: 11 VVAESEPPRGNRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMG 70
Query: 113 SLNVCSLIGSLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGV 172
LN+ SLIGS AAG+TSD IGRRYTIV ++ F+M GR V+GIGV
Sbjct: 71 ILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGV 130
Query: 173 GYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232
GY++MIAPVYTTE++PA +RGFLSS PE+FIN GILLGY+SNY + LPEHI WR MLG+
Sbjct: 131 GYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGI 190
Query: 233 AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA--- 289
A+P++ +A GV+AMPESPRWLVM+GR DA + L KTS++ EEA RLN++ R +
Sbjct: 191 GAVPSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPD 250
Query: 290 DLGH---AASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEV 346
D+ + G+GVWK+ A +G++F QASG DAVV YSP +
Sbjct: 251 DMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTI 310
Query: 347 FKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406
F AG+ SK + TV +G+ KT F+++ +D FGRR LL+ GM SL LG
Sbjct: 311 FSRAGLKSKNDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTS 370
Query: 407 SKYLDQSDIKPXX-XXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465
+D++ + + FS+G GP+TWVY+SEIFP + RAQG+SL +
Sbjct: 371 LTVIDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVM 430
Query: 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF 524
+NRL+SGI+ M+FLS+S+ +T GG F + +G+ VFF+ FLPET+G LE+I LF
Sbjct: 431 LNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTFLPETRGVPLEEIESLF 489
|
|
| TAIR|locus:2052956 PMT1 "polyol/monosaccharide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 224/479 (46%), Positives = 312/479 (65%)
Query: 55 VSLQRKKPRFNK--YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVG 112
V + + PR N+ YA AILAS SI+LGYDIGVMSGA ++I+D+L ++ +Q+E+L+G
Sbjct: 11 VIAESEPPRGNRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMG 70
Query: 113 SLNVCSLIGSLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGV 172
LN+ SL+GS AAG+TSD +GRRYTIV ++ F+M GR V+GIGV
Sbjct: 71 ILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGV 130
Query: 173 GYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232
GY++MIAPVYT E++PA +RGFL+S PE+FIN GILLGY+SNY S LPEH+ WR MLG+
Sbjct: 131 GYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGV 190
Query: 233 AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA--- 289
A+P++ +A GV+AMPESPRWLV++GR DA + L KTS++ EEA RL+++ R +
Sbjct: 191 GAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPD 250
Query: 290 DLGH---AASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEV 346
D+ + G+GVWK+ A +G++F QASG DAVV YSP +
Sbjct: 251 DMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTI 310
Query: 347 FKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406
F AG+ SK + TV +G+ KT F+++ +D FGRR LL+ GM +SL LG
Sbjct: 311 FSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTS 370
Query: 407 SKYLDQSDIKPXX-XXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465
++++ + + FSIG GP+TWVY SEIFP + RAQG+SL +
Sbjct: 371 LTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVM 430
Query: 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF 524
+NRL+SGI+ M+FLS+S+ +T GG F + +G+ A VFF+ FLPET+G LE++ LF
Sbjct: 431 LNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLEEMETLF 489
|
|
| TAIR|locus:2115415 PMT6 "polyol/monosaccharide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 223/474 (47%), Positives = 307/474 (64%)
Query: 60 KKPR-FNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCS 118
+KP N++AL AI+AS SI+ GYD GVMSGA+++I ++L +Q+EVL G LN+C+
Sbjct: 8 EKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCA 67
Query: 119 LIGSLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMI 178
L+GSL AG+TSD IGRRYTIV P++ L++GR +G+GVG++LM+
Sbjct: 68 LVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMV 127
Query: 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238
APVY+ EI+ A RG L+SLP + I+ GILLGYI NY S LP HI WRLMLG+AA+P++
Sbjct: 128 APVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSL 187
Query: 239 AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMT-------RTIADL 291
+AFG++ MPESPRWL+M+GR + K+ L S+S EEAE R ++ + + D+
Sbjct: 188 VLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDV 247
Query: 292 GHAASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAG 351
G+GVWKE A+G++FF ASG +AV+ Y P +FK AG
Sbjct: 248 VKMEGKKT-HGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAG 306
Query: 352 INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLD 411
I +K +L VT+ +GI KT+F+ + L LD GRR LL+ GM ++L +LG G
Sbjct: 307 ITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFGLTMAQ 366
Query: 412 QSDIKPXXXXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471
+ K +FFSIGLGPITWVYSSE+FP K RAQG+SL ++VNR+++
Sbjct: 367 NAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMN 426
Query: 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFE 525
V+MSFLS++ A+T GG FF+ +G+ AV FF+F LPETKGKSLE+I LF+
Sbjct: 427 ATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQ 480
|
|
| TAIR|locus:2051443 AT2G20780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 220/503 (43%), Positives = 308/503 (61%)
Query: 24 PAAKEGQRRHEELWHKQASEVA-SQKHTDLPGVSLQRKKPRFNKYALTGAILASTNSILL 82
PA G ++++ + + S+ SQ H + + + R KY + A AS N++LL
Sbjct: 17 PAVSVGNKKNK--YQRMDSDAEESQNHREA-----EARNSRTRKYVMACAFFASLNNVLL 69
Query: 83 GYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVXXX 142
GYD+GVMSGA+L+I+ +L IT +Q EVL+GSL++ SL GSLA G+TSD IGR++T+
Sbjct: 70 GYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAA 129
Query: 143 XXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVF 202
PSF LM GR ++GIG+G +MIAPVY EISP + RGF +S PE+F
Sbjct: 130 LVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIF 189
Query: 203 INFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFAD 262
IN GILLGY+SNYA SGL HI+WR+ML + LP++ + F + +PESPRWLVMKGR
Sbjct: 190 INLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDS 249
Query: 263 AKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEXXXXXXXXXXXXXX 322
A++ L+KT++ +EAE RL E+ A H S + + VW+E
Sbjct: 250 AREVLMKTNERDDEAEERLAEIQLAAA---HTEGSED---RPVWRELLSPSPVVRKMLI- 302
Query: 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382
G+ F Q +G DA VYYSPE+ K+AGI + +L+ TV +G+ KT F+L + +D
Sbjct: 303 VGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDS 362
Query: 383 FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPXXXXXXXXXXXXXXXSFFSIGLGPI 442
GR+PLL + + GM + L L +L Q + +FFSIG+GP+
Sbjct: 363 VGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTL----GITLALLFVCGNVAFFSIGMGPV 418
Query: 443 TWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGT 502
WV +SEIFP + RAQ S+L NR+ SG+VAMSFLS+SRA+T GG FF+ S ++A+
Sbjct: 419 CWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSV 478
Query: 503 VFFYFFLPETKGKSLEDIGLLFE 525
+F Y +PET GKSLE I L+F+
Sbjct: 479 IFVYVLVPETSGKSLEQIELMFQ 501
|
|
| TAIR|locus:2046333 AT2G18480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 220/470 (46%), Positives = 301/470 (64%)
Query: 62 PRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIG 121
P NK+A AI+AS SI+ GYD GVMSGA ++IRD+L I Q+EVL G LN+C+L+G
Sbjct: 16 PHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVG 75
Query: 122 SLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMIAPV 181
SL AGKTSD IGRRYTI P++ LM GR ++G+GVG++LMIAPV
Sbjct: 76 SLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPV 135
Query: 182 YTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVA 241
Y+ EIS A RGFL+SLPE+ I+ GILLGY+SNY L + WRLMLG+AA P++ +A
Sbjct: 136 YSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILA 195
Query: 242 FGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRT-------IADLGHA 294
FG+ MPESPRWLVM+GR +AK+ ++ S++ EEAE R ++ I ++G
Sbjct: 196 FGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGG 255
Query: 295 ASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS 354
N G+ VW+E AA+G++FF A+G +AVV YSP +FK AG+ S
Sbjct: 256 VKKKN-HGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVS 314
Query: 355 KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD 414
K +L+ TV +G+ K F++I+ LD GRR LL+ + GM +L L + S + Q
Sbjct: 315 KDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAV-SLTMVQRF 373
Query: 415 IKPXXXXXXXXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIV 474
+ +FFSIGLGPITWVYSSEIFP + RAQG+S+ ++VNR+++ V
Sbjct: 374 GRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATV 433
Query: 475 AMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF 524
+MSFLS+++A+T GG+FF+ +GI FF+F LPETKG LE++ LF
Sbjct: 434 SMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLF 483
|
|
| TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 143/480 (29%), Positives = 241/480 (50%)
Query: 58 QRKKPRF-NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNI---TSIQVEVLVGS 113
+R+ F N Y L + A +L GYD GV+SGA+LYI+D+ + +S E +V
Sbjct: 20 ERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSM 79
Query: 114 LNVCSLIGSLAAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVG 173
V ++IG+ A G +D GR+ + P L++GR++ G+GVG
Sbjct: 80 ALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVG 139
Query: 174 YSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA 233
+ + APVY E SP+ RG L S + I G L Y+ N A + +P WR MLG++
Sbjct: 140 VASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPG--TWRWMLGVS 197
Query: 234 ALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGH 293
+PA+ ++ MPESPRWL MK R A+A Q L +T D + E ++ ++
Sbjct: 198 GVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYD-ISRLEDEIDHLS-------- 248
Query: 294 AASSNNWQGQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAGIN 353
AA Q + A G+ F Q +G + V+YYSP + + AG +
Sbjct: 249 AAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFH 308
Query: 354 SKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQS 413
S + + +++I+ + ++ ++DH GR+ L + G+ +SL +L + + QS
Sbjct: 309 SNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVS--FFKQS 366
Query: 414 DIKPXXXXXX--XXXXXXXXXSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471
+ FF+ G+GP+ W +SEI+P ++R ++ +VN + +
Sbjct: 367 ETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISN 426
Query: 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFEDKAHDN 531
IVA +FL+I+ A G F IL+GI + +F F+PET+G + ++ +++++A+ N
Sbjct: 427 LIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGN 486
|
|
| RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 115/416 (27%), Positives = 194/416 (46%)
Query: 12 QDCYYLLLDSESPAAKEGQRRHEELWHK--QASEVASQKHTDLPGVSLQRKKPR-FNK-- 66
+D Y L S S E +RR E + S +A++ L G L+R R F +
Sbjct: 7 EDVEYTLR-SLSSLMGERRRRQPEPGAPGGERSLLAAESAASLQGAELERAARRQFQRDE 65
Query: 67 ---YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSL 123
+ A ++ L GYD GV+SGA+L +R + + ++ E+LV + + +L
Sbjct: 66 TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAAL 125
Query: 124 AAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMIAPVYT 183
A G + +GRR I+ + L+AGR+V G+G+G + M PVY
Sbjct: 126 AGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYI 185
Query: 184 TEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243
E+SP RG L ++ +FI G + + A S L + WR MLGLAA+PA+ G
Sbjct: 186 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKD-GWRYMLGLAAIPAVIQFLG 244
Query: 244 VIAMPESPRWLVMKGRFADAKQAL--IKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQ 301
+ +PESPRWL+ KG+ A++ L ++ + +++E E+ + + +I + AS+
Sbjct: 245 FLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDE-EY--DSIRNSIEEEEKEASA---A 298
Query: 302 GQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGV 361
G + + G+ F Q SG + ++YYS + + +G+ + + +
Sbjct: 299 GPIICR---MLSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWL 355
Query: 362 TVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417
I F L+ ++ GRR L G V+L +L LG +L + + P
Sbjct: 356 ASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALG--FLLSAQVSP 409
|
|
| UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 5.7e-56, Sum P(2) = 5.7e-56
Identities = 100/354 (28%), Positives = 170/354 (48%)
Query: 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAG 126
+ A+ ++ L GYD GV+SGA+L ++ L++ ++ E+LV S + + +LA G
Sbjct: 84 FVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGG 143
Query: 127 KTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEI 186
+ GRR I+ + L+AGR+V G+G+G + M PVY E+
Sbjct: 144 ALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVGLGIGIASMTVPVYIAEV 203
Query: 187 SPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA 246
SP RG L ++ +FI G + + A S L + WR MLGLAA+PA+ FG +
Sbjct: 204 SPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKD-GWRYMLGLAAIPAVIQFFGFLF 262
Query: 247 MPESPRWLVMKGRFADAKQAL--IKTSDSV-EEAEFRLNEMTRTIADLGHAASSNNWQGQ 303
+PESPRWL+ KG+ A++ L ++ + ++ EE + N + ++G A G
Sbjct: 263 LPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSA-------GP 315
Query: 304 GVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTV 363
+++ G+ F Q SG + ++YYS + + +G+ + + +
Sbjct: 316 VIYR---MLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLAS 372
Query: 364 IMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417
+ F L+ ++ GRR L G V+L VL LG +L + + P
Sbjct: 373 VTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLALG--FLLSAQVSP 424
|
|
| MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 114/416 (27%), Positives = 194/416 (46%)
Query: 12 QDCYYLLLDSESPAAKEGQRRHEELWHK--QASEVASQKHTDLPGVSLQRKKPR-FNK-- 66
+D Y L S S E +RR E + S +A++ L G L+R R F +
Sbjct: 7 EDVEYTLR-SLSSLMGERRRRQPEPGAPGGERSLLAAESAASLQGAELERAARRQFQRDE 65
Query: 67 ---YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSL 123
+ A ++ L GYD GV+SGA+L +R + + ++ E+LV + + +L
Sbjct: 66 TPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAAL 125
Query: 124 AAGKTSDCIGRRYTIVXXXXXXXXXXXXXXXXPSFLFLMAGRVVSGIGVGYSLMIAPVYT 183
A G + +GRR I+ + L+AGR+V G+G+G + M PVY
Sbjct: 126 AGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYI 185
Query: 184 TEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243
E+SP RG L ++ +FI G + + A S L + WR MLGLAA+PA+ G
Sbjct: 186 AEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKD-GWRYMLGLAAIPAVIQFLG 244
Query: 244 VIAMPESPRWLVMKGRFADAKQAL--IKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQ 301
+ +PESPRWL+ KG+ A++ L ++ + +++E E+ + + +I + A++
Sbjct: 245 FLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDE-EY--DSIRNSIEEEEKEATA---A 298
Query: 302 GQGVWKEXXXXXXXXXXXXXXAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGV 361
G + + G+ F Q SG + ++YYS + + +G+ + + +
Sbjct: 299 GPIICR---MLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWL 355
Query: 362 TVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417
I F L+ ++ GRR L G V+L +L LG +L + + P
Sbjct: 356 ASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALG--FLLSAQVSP 409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZ80 | PLT5_ARATH | No assigned EC number | 0.55 | 0.8835 | 0.8868 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016743001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (500 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-94 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-91 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-65 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-25 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-21 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-20 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-19 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-15 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-11 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 4e-09 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 6e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-05 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 7e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 7e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-04 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 3e-04 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 4e-04 | |
| PRK11652 | 394 | PRK11652, emrD, multidrug resistance protein D; Pr | 6e-04 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 7e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.002 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.004 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 3e-94
Identities = 151/466 (32%), Positives = 251/466 (53%), Gaps = 31/466 (6%)
Query: 72 AILASTNSILLGYDIGVMSGAILYI-----------RDNLNITSIQVEVLVGSLNVCSLI 120
A++A+ L GYD GV+ + I +++ ++V +V LI
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 121 GSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLM--AGRVVSGIGVGYSLMI 178
GSL AGK D GR+ ++++ F++GALL G A F M GRV+ G+GVG ++
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238
P+Y +EI+P RG L SL ++ I FGIL+ I L+ WR+ LGL +PAI
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 239 AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSN 298
+ G++ +PESPRWLV+KG+ +A+ L K V + + + E ++
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAK-LRGVSDVDQEIQEEKDSLER-------- 232
Query: 299 NWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQL 358
+ + + L R + +R+ L+ + + F Q +G +A+ YYSP +F+ G+
Sbjct: 233 SVEAEKASWLELFR-GKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL---SDS 288
Query: 359 VGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPA 418
+ VT+I+G+ F I+ +D FGRRPLL+LG+ GMA+ VLG+ + K
Sbjct: 289 LLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA----KSK 344
Query: 419 WAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478
A + ++ + ++FF++G GP+ WV SE+FP R + ++A + N L + ++ F
Sbjct: 345 GAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLF 404
Query: 479 LSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLF 524
I+ A+ G +F + +G+ + +F +FF+PETKG++LE+I LF
Sbjct: 405 PIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 3e-91
Identities = 161/465 (34%), Positives = 257/465 (55%), Gaps = 19/465 (4%)
Query: 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNIT--------SIQVEVLVGSLNVCS 118
+++A+ ++ GYD GV+ GA+ T S ++V V
Sbjct: 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGG 84
Query: 119 LIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLF---LMAGRVVSGIGVGYS 175
IG+L AG SD GR+ ++++ A F++GA+LMGLA L L+ GRV+ GIGVG +
Sbjct: 85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIA 144
Query: 176 LMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235
+ P+Y +EI+P RG L+SL ++ I FGIL+ Y L + WR+ LGL +
Sbjct: 145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204
Query: 236 PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAA 295
PA + G+ +PESPRWLV KGR +A+++L + + E + L+E+
Sbjct: 205 PAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEK 264
Query: 296 SSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSK 355
Q W L R RR+ + + + +F Q +G +A++YYSP +F++AG+++
Sbjct: 265 R----SVQPSWGSLFSSTRRIRRRLFL-GVVLQWFQQFTGINAIMYYSPTIFENAGVSTD 319
Query: 356 KQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDI 415
+ V++I+G +F ++ +D FGRRPLL++G+ GMA+ L VLG+
Sbjct: 320 HAFL-VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378
Query: 416 KPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475
K + +A+ I + A FF++G GP+ WV SEIFP R +G S+A++ N L + IV
Sbjct: 379 KSSGNVAIVFILLFIA--FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVG 436
Query: 476 MSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDI 520
F ++ ++ GG+F G+ +G +F YFFLPETKG++LE+I
Sbjct: 437 FLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 3e-65
Identities = 150/503 (29%), Positives = 242/503 (48%), Gaps = 68/503 (13%)
Query: 63 RFNKYALTGAILASTNSILLGYDIGVMSGAI----LYIRDNLNITSIQVEVLVG----SL 114
+ Y + ++A+ +L GYD V+SG + N++ L+G S
Sbjct: 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASA 64
Query: 115 NVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-PSFLFLMAG--------- 164
+ +IG G S+ GRR ++ +AA F + AL G A P F F G
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL--GSAWPEFGFTSIGPDNTGYVPE 122
Query: 165 ----RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNY--ALS 218
R++ GIGVG + M++P+Y EI+PA RG L S + I FG L+ Y NY A S
Sbjct: 123 FVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS 182
Query: 219 GLPEHIN---WRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVE 275
G +N WR M A+PA+ + +PE+PR+L+ +G+ A+ L K +
Sbjct: 183 GDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN-T 241
Query: 276 EAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGV--NFFMQA 333
A L E+ ++ G+ +LL+ + + IGV + F Q
Sbjct: 242 LATQALQEIKHSLD-----------HGRKTGGKLLMFG------VGVIVIGVMLSVFQQF 284
Query: 334 SGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393
G + V+YY+PE+FK G ++ L+ T+I+G+ +F +++ + +D FGR+PL ++G+
Sbjct: 285 VGINVVLYYAPEIFKTLGASTDIALL-QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA 343
Query: 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT 453
GMA+ + LG + Y I ++++ V+ F++ GP+ WV SEIFP
Sbjct: 344 LGMAIGMFSLGT-AFYTQAPGIVA-------LLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395
Query: 454 KFRAQGSSLAISV------NRLVSGIVAMSFLSISRAVTFGGMF-FILSGITAV-GTVFF 505
R G +LAI+V N VS M + F F + + G V +F
Sbjct: 396 AIR--GKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
Query: 506 YFFLPETKGKSLEDIGLLFEDKA 528
+ F+PETKGK+LE++ L+E +
Sbjct: 454 WKFVPETKGKTLEEMEALWEPET 476
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-25
Identities = 98/428 (22%), Positives = 170/428 (39%), Gaps = 65/428 (15%)
Query: 106 QVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGA--LLMGLAPSFLFLMA 163
+V++ V L+GS G SD GR+ VL +T + +L +P++ +
Sbjct: 128 KVDLTQSCFFVGVLLGSFVFGYLSDRFGRK--KVLLLSTLVTAVSGVLTAFSPNYTVFLV 185
Query: 164 GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH 223
R++ G+G+G + A V TE P R + +L +VF + G++L L +
Sbjct: 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL-------LPLVAYF 238
Query: 224 I-NWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIK------TSDSVEE 276
I +WR + +LP +PESPRWL+ +GR +A + L + E
Sbjct: 239 IPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 277 AEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGN 336
L + +SS + +L P+ LR+ + + + F
Sbjct: 299 LSLSLEK---------DLSSSKKQYS---FLDLFRTPN--LRKTTLCLMMLWF------T 338
Query: 337 DAVVYYS-----PEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391
A YY + + ++ I G+ + LI+ L +D GRR +
Sbjct: 339 TAFSYYGLVLDLGNLGGNIYLDL--------FISGLVELPAKLITLLLIDRLGRRYTMAA 390
Query: 392 GSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIF 451
V+L +L L AL V+ S F + ++Y++E++
Sbjct: 391 SLLLAGVALLLLLFVPVDL------YFLRTALAVLGKFGITSAFQM-----VYLYTAELY 439
Query: 452 PTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511
PT R G + ++ R V I++ + + F + +L G A+ FLPE
Sbjct: 440 PTVVRNLGVGVCSTMAR-VGSIISPFLVYLGEKWLF--LPLVLFGGLALLAGILTLFLPE 496
Query: 512 TKGKSLED 519
TKG L +
Sbjct: 497 TKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 3/176 (1%)
Query: 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI 132
+L L G D G++S A+ + ++L +++ Q ++V + ++ +GSL AG SD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 133 GRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTR 192
GRR ++L F LG+LL+ A S L+ GR + G+G G A E P R
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 193 GFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMP 248
G L G LLG + L+ E + WR + + A+ + +A ++ +
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLA---ESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-20
Identities = 90/424 (21%), Positives = 156/424 (36%), Gaps = 44/424 (10%)
Query: 56 SLQRKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLN 115
+ RK+P ++Y IL+ ++ GYD+ M A I + +Q+ L +
Sbjct: 4 NNIRKQP-LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGL 62
Query: 116 VCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYS 175
+ G+L G +D IGRR ++ + F + LL LA + L+ R ++G+G+G
Sbjct: 63 IGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGL 122
Query: 176 LMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG-LPEHINWRLMLGLAA 234
+ +E +P RG L +F G +G L+G L WR + +
Sbjct: 123 MPNLNALVSEYAPKRFRGTAVGL--MFC--GYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178
Query: 235 L-PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGH 293
+ P + + + +PES +LV K E +N + +
Sbjct: 179 IAPLLLLLLLMRFLPESIDFLVSKRP---------------ETVRRIVNAIAPQMQAEAQ 223
Query: 294 AASSNNWQGQGVWKE---LLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDA 350
+A QG + L + +L+ + +FM G + + P++ +
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLW---LLYFMLLVGVYFLTNWLPKLMVEL 280
Query: 351 GINSKKQ-LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKY 409
G + G G S +I D G R L AV ++G
Sbjct: 281 GFSLSLAATGGALFNFGGVIGS--IIFGWLADRLGPRV-TALLLLLGAVFAVLVGST--- 334
Query: 410 LDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRL 469
+ L + A+ FF G + + +PT RA G AI + RL
Sbjct: 335 --LFSP----TLLLLLGAI---AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRL 385
Query: 470 VSGI 473
+ I
Sbjct: 386 GAII 389
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 111/513 (21%), Positives = 197/513 (38%), Gaps = 71/513 (13%)
Query: 60 KKPRFNKYALTGAILASTNSILLGYDI------GVMSGAILYIRDNLNITSIQVEVLVGS 113
F ++A YD+ M G + Y +S+ V GS
Sbjct: 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAV-NGS 64
Query: 114 LNVCSLIGSLAAGKTSDCIGRRY----TIVLAAATFLLGALLMGLAPSFLF--LMAGRVV 167
++ +L G L G +D +GR+ +++ + L G +P + L R
Sbjct: 65 ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW 124
Query: 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH---- 223
G+G+G ++ + T+E + RG + + FGIL G I + +H
Sbjct: 125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184
Query: 224 ----------------INWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQAL 267
WR+++G A+PA+ + + +PE+PR+ + D +QA
Sbjct: 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK--DVEQAA 242
Query: 268 I-KTSDSVEEAEFRLNEMTRTIADLG--HAASSNNWQGQGVWKE--LLLRPSRPLRRILI 322
++ + E +E+ + + A+ S+ + W+ LL + + I
Sbjct: 243 SDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI 302
Query: 323 AAIGVNFF----MQASGNDAVVYYSPEVFKDAGINS-KKQLVGVTVIMGIAKTSFVLISA 377
A GVN + A G YSP + K VG +I ++
Sbjct: 303 AFYGVNLNQKVILSAIG------YSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356
Query: 378 LYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSI 437
+D GR+P+ ++G + V VLG + + +A+ V+A F +
Sbjct: 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LSTHGFLAIYVLAQF----FANF 407
Query: 438 GLGPITWVYSSEIFPTKFR--AQGSSLAISVNRLVSGIVAMSFLSISRAVTFGG------ 489
G T++ E+FPT++R A G S A + G +L+ T G
Sbjct: 408 GPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWM 467
Query: 490 --MFFILSGITAVGTVFFYFFLPETKGKSLEDI 520
+ I + +G + F +PETKGKSLE++
Sbjct: 468 GHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 78/398 (19%), Positives = 139/398 (34%), Gaps = 61/398 (15%)
Query: 79 SILLGYDIGVMSGAI-LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYT 137
+ L G ++ A+ LY+ ++L I+ ++ +L+ + ++ + AG+ SD GRR
Sbjct: 5 AFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRV 64
Query: 138 IVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSS 197
+++ F LG LL+ A S L+ RV+ G+G G A + P RG
Sbjct: 65 LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALG 124
Query: 198 LPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPA-IAVAFGVIAMPESPRWLVM 256
L G LG + L+ WR + A+ A +A + +P P
Sbjct: 125 LLSAGFGLGAALGPLLGGLLA---SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKR 181
Query: 257 KGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRP 316
+A L+ WK LL P
Sbjct: 182 PKPAEEAPAPLVP-----------------------------------AWKLLL---RDP 203
Query: 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLIS 376
+ +L+A + F A ++ Y P + G+ S + + G+ L+
Sbjct: 204 VLWLLLALLLFGFAFFA-----LLTYLPLYQEVLGL-SALLAGLLLGLAGLLGAIGRLLL 257
Query: 377 ALYLDHFG-RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFF 435
D G RR LL+ + +L + L W + ++ + F
Sbjct: 258 GRLSDRLGRRRRLLLALLLLILAALGLALLS------LTESSLWLLVALLL-----LGFG 306
Query: 436 SIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473
+ + P S++ P + R S L + L +
Sbjct: 307 AGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 78/380 (20%), Positives = 140/380 (36%), Gaps = 70/380 (18%)
Query: 120 IGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF--------LFLMAGRVVSGIG 171
+G++ G D IGR+ T+V+ +G LL+GL PS+ + L+ R++ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 172 VGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-----INW 226
+G A +Y E +P RGF S +V G+LL ++ LS L W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 227 RLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTR 286
R+ L + + + +L ++ + E+A+ + +
Sbjct: 170 RIPF-LVSAVLVLIGL----------YLRRN----------LEETPVFEKAQEKHKKKRG 208
Query: 287 TIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEV 346
I E L + +P L I + Y P
Sbjct: 209 PI------------------AETLTKHRKPFLLGLGLVIATTTTFY-----LITTYLPTY 245
Query: 347 FKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406
S + V ++ I + +S D GRRP+L++ + A+ LAV L
Sbjct: 246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL-LAVPLL- 303
Query: 407 SKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV 466
LD V+ + ++ +G E+FPT+ R G+SLA ++
Sbjct: 304 MALLDSGSF---TLFFFLVLGMALIGGMYTGPMGSFL----PELFPTEVRYTGASLAYNL 356
Query: 467 NRLVSG----IVAMSFLSIS 482
+ G +A + ++++
Sbjct: 357 AGAIFGGFAPYIAAALVAMT 376
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 14/189 (7%)
Query: 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYL 380
L+ + + FF+ + G ++ Y P ++ S + + + G+ L+ L
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 381 DHFGRRP-LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGL 439
D GRR LL++G A+ L +L L +AL ++ +F
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLA-------LLLVALLLLGFGLGFAF----- 283
Query: 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITA 499
P +SE+ P + R S L + L + + + +GG+F IL+ +
Sbjct: 284 -PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342
Query: 500 VGTVFFYFF 508
+ +
Sbjct: 343 LAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 72/336 (21%), Positives = 124/336 (36%), Gaps = 49/336 (14%)
Query: 103 TSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLM 162
T++ L+ + + G+L G D GRR +V + F G L G AP ++ +
Sbjct: 45 TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMF 104
Query: 163 AGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPE 222
R+V GIG+G + Y E P R S L G ++ Y+L
Sbjct: 105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV-YSLVVPVW 163
Query: 223 HINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKT-SDSVEEAEFRL 281
WR + ++ LP I + +PE+ W + A +AL++T D + E R+
Sbjct: 164 GDGWRALFFISILPIIFALWLRKNIPEAEDW-----KEKHAGKALVRTMVDILYGGEHRI 218
Query: 282 NEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVY 341
+ T+A ++ W V+ +L+ + + + ++
Sbjct: 219 ANIVMTLAAAMVQSAGKRWP-TFVYLVVLV---------------LFANLYSHPIQDLL- 261
Query: 342 YSPEVFK-DAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR-------------- 386
P K D G++ + V I + D GRR
Sbjct: 262 --PTYLKADLGLSPHTVAN-IVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318
Query: 387 -PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAI 421
P+ +G+ +AVLGLG + Q ++ W I
Sbjct: 319 IPVFAIGAN-----VAVLGLGL-FFQQMLVQGIWGI 348
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 40/264 (15%)
Query: 119 LIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMI 178
++G+ G +D +GR+ +++ + A + F + R++SG G+G ++ I
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275
Query: 179 APVYTTEISPAMTRG-FLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA---- 233
Y E RG LS L ++ GI Y + A + +P H W +G A
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGI---YAAAMAWAIIP-HYGWSFQMGSAYQFH 331
Query: 234 ---------ALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAE------ 278
A P + + MPESPR+ + G+ +A L D+ A+
Sbjct: 332 SWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV 391
Query: 279 FRLNEMTRTIADLGH----AASSNNW----------QGQGVWKELLLRPSRPLRRILIAA 324
F +N + +TI + + W +G G+W L + +R I I
Sbjct: 392 FSVNHI-KTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKL 450
Query: 325 IGVNFFMQASGNDAVVYYSPEVFK 348
+GV F + V++ P++ K
Sbjct: 451 MGVWFTLSFGYYGLSVWF-PDMIK 473
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 81 LLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVL 140
L G+D +++ + ++ +T++Q L+ + + G L G D GRR +V+
Sbjct: 31 LDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90
Query: 141 AAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTR----GFLS 196
+ F +G L G AP + L R+V G+G+ + Y E P R GFL
Sbjct: 91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI 150
Query: 197 SLPEVFINFGILLGYI-SNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRW 253
S G +G + + S + WR + + LP I + +PE+ W
Sbjct: 151 S--------GFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDW 200
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 87 GVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRY-TIVLAAATF 145
G+++ LY+++ L +++ + +L+ + ++G+L G SD +GRR +++
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252
Query: 146 LLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINF 205
LG LL+ LAPS L+ ++ G G+G++ +E++P RG S L F +
Sbjct: 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312
Query: 206 GILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMP 248
G LG L + + + + A A+ A ++ +P
Sbjct: 313 GGALGP---LLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 81/419 (19%), Positives = 135/419 (32%), Gaps = 82/419 (19%)
Query: 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLL 147
V G + I +L ++ L+ + + +G+ + + RR ++ A F++
Sbjct: 31 VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90
Query: 148 GALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGI 207
LL LAPSF L+ R ++G+ G IA + P RG +L + G+
Sbjct: 91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALAL----VFTGL 146
Query: 208 LLGYISNYALSG-LPEHINWRL-MLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQ 265
L + L L + WR L +A L +A+ +P S
Sbjct: 147 TLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS--------------- 191
Query: 266 ALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAI 325
++ + LLR L +L +
Sbjct: 192 ------------------------EISGSLPGPLRT-----LLRLLRRPGVLLGLLATFL 222
Query: 326 GVNFFMQASGNDAV-VYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG 384
+ +G+ A+ Y P + AG S + V + GIA L+ D G
Sbjct: 223 FM------TGHFALYTYIRPFLESVAGF-SVSAVSLVLLAFGIAGFIGNLLGGRLADR-G 274
Query: 385 RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITW 444
R L+ +A++L L A + +F G T
Sbjct: 275 PRRALIAALLLLALALLALTFT----------GASPALALALLFLWGFAFSPALQGLQTR 324
Query: 445 VYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTV 503
+ + + LA S+N VA L I+ GG+ G A G V
Sbjct: 325 L-------ARLAPDAADLAGSLN------VAAFNLGIALGAALGGLVLDALGYAATGWV 370
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 14/189 (7%)
Query: 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLD 381
+ + + FF+ + P + +D G+ S Q + + L++ D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGL-SASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 382 HFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGP 441
FGRR +L+LG A+ +L S + ++ + L P
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSL-------WLLLVGRFLLGLGGG------ALYP 106
Query: 442 ITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVG 501
+E FP K R + L + L + + + ++ ++ + +F IL+ + +
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166
Query: 502 TVFFYFFLP 510
+ F L
Sbjct: 167 ALLLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 4/133 (3%)
Query: 119 LIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMI 178
LI S +G +D GR+ +++ F+L + L+ + L+ R + G G ++L+
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVA 71
Query: 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238
+I P RG L I G LLG L+ + WR A+ A+
Sbjct: 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILAL 128
Query: 239 AVAF-GVIAMPES 250
A +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGK 127
+L + ++L D +++ AI I +L + QV+ ++ S + + I G
Sbjct: 3 LTIVLMLGTFMAVL---DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGW 59
Query: 128 TSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTT--E 185
+ G R +++ F LG+LL G+AP+ ++ RV+ G G G +I ++T
Sbjct: 60 LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGG--PLIPLSFSTLLN 117
Query: 186 ISPAMTRGFLSSLPEVFINFGILLGYISNYALSG-LPEHINWRLMLGLAALPAIAV 240
I P RG ++ + + LG L G + E+ +WR + + I V
Sbjct: 118 IYPPEKRGRAMAIWGLTVLVAPALGPT----LGGWIIENYHWRWIFLINVPIGIIV 169
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 83 GYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAA 142
G+D ++ + I+ +L +T ++ L + + G G +D GR+ ++ +
Sbjct: 31 GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI 90
Query: 143 ATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVF 202
+ +G L GLA + L R + G+G+ A Y E P L S F
Sbjct: 91 VAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH----LKSKASAF 146
Query: 203 INFGILLG-YISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMK 257
+ G +G I+ Y + E WR + LP + V + PES W K
Sbjct: 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202
|
Length = 426 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 361 VTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWA 420
+ + ++ D FGRR +L++G A+ L +L S
Sbjct: 37 LLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL-------WLLL 89
Query: 421 IALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480
+ + + F P ++ FP + R + L + L + + +
Sbjct: 90 VLRVLQGLGGGALF------PAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 481 ISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIG 521
++ + F IL+ + + V LP +S
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKP 184
|
Length = 346 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 64/365 (17%), Positives = 124/365 (33%), Gaps = 39/365 (10%)
Query: 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGA 149
S A ++++L +++ Q + + + ++G G D G R T+ + + +
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73
Query: 150 LLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFG-IL 208
L A +++ L RV+ G + PA R S+ G I+
Sbjct: 74 GLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII 133
Query: 209 LGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALI 268
G + + L + + L + + + P+ +WL + ++ L
Sbjct: 134 GGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLA 193
Query: 269 KTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVN 328
+ G S+ KELL RR+ A+G
Sbjct: 194 EQQ--------------------GKGPSTPKK---YQIKELLKD-----RRVWGLALG-- 223
Query: 329 FFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPL 388
F+ G + + P S + + + GI +++ D RR
Sbjct: 224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK 283
Query: 389 LMLGSTGMA-VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYS 447
++ + A ++ VL L + +I AL ++ A+ FF +G G I W
Sbjct: 284 SLVFARKTAIIAGLVLSLLMFATNYVNIP---YAALALV----ALGFFGLGAGAIGWALI 336
Query: 448 SEIFP 452
S+ P
Sbjct: 337 SDNAP 341
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 96/419 (22%), Positives = 161/419 (38%), Gaps = 87/419 (20%)
Query: 120 IGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF--------LFLMAGRVVSGIG 171
IG G+ +D GR+ +++++ G+L++ P + L+ R+ G+
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 172 VGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-----W 226
VG + Y +E++ +GF +S V + G LL + L E W
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197
Query: 227 RLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTR 286
R+ L A+ A V+A+ WL ++ L +TS TR
Sbjct: 198 RIPFALGAVLA------VVAL-----WL---------RRQLDETSQQ----------ETR 227
Query: 287 TIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEV 346
+ + G +G+W+ RR I +G Y +
Sbjct: 228 ALKEAGSL--------KGLWRN---------RRAFIMVLGFTAAGSLCFYTFTTYMQKYL 270
Query: 347 FKDAGINSKKQLVGVTVIMGIAKTSFVLISALY---LDHFGRR-PLLMLGSTGMAVSLAV 402
AG+++ + IM A F+LI L D GRR +L GS ++ +
Sbjct: 271 VNTAGMHANV----ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPI 326
Query: 403 LGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL 462
L Q+ P A L + A+ VSF++ I+ + +E+FP + RA G L
Sbjct: 327 LS-----ALQNVSSPYAAFGLVMCAL-LIVSFYT----SISGILKAEMFPAQVRALGVGL 376
Query: 463 AISV-NRLVSG---IVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSL 517
+ +V N L G VA+S SI F F+ ++ + V F + KGK +
Sbjct: 377 SYAVANALFGGSAEYVALSLKSIGMETAF---FWYVTLMAVVA--FLVSLMLHRKGKGM 430
|
Length = 432 |
| >gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL 151
AI + +LN+ V+ ++ + + + L G SD +GRR I++ + F+LG L+
Sbjct: 30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89
Query: 152 MGLAPSFLFLMAGRVVSGIGVG 173
A S L+A + G+G G
Sbjct: 90 ALFAHSLTVLIAASAIQGLGTG 111
|
Length = 394 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 5/122 (4%)
Query: 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153
L S ++ + + +L+G+L G R + A L L++G
Sbjct: 236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG 295
Query: 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTT---EISPAMTRGFLSSLPEVFINFGILLG 210
L P L IGVGY I T PA G + + LG
Sbjct: 296 LTPPNFPLFLVLWF-AIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG 353
Query: 211 YI 212
I
Sbjct: 354 LI 355
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 119 LIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSL-- 176
L G+L G+ +D IGR+ ++++ A F L +L A F L+ R+++G+G+G +L
Sbjct: 64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPN 123
Query: 177 MIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL--PEHINWRLML---G 231
+IA T+E RG SL + FG L ++ G+ WR + G
Sbjct: 124 LIA--LTSEAVGPRLRGTAVSLMYCGVPFGGALA-----SVIGVLAAGDAAWRHIFYVGG 176
Query: 232 LAALPAIAVAFGVIAMPESPRWLVMKGR 259
+ P + V + +PES + G
Sbjct: 177 VG--PLLLVPLLMRWLPESRAFAQAAGA 202
|
Length = 406 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 95 YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL 154
Y++ +L ++ V +V N+ +++G G D +GRR V + G
Sbjct: 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL--------AGQ 315
Query: 155 APSFLFLMAGRVVSGIGVGYSLM---------IAPVYTTEISPAMTRG 193
G V+ +G+G I P + E P R
Sbjct: 316 LLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA 363
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 64/408 (15%), Positives = 129/408 (31%), Gaps = 90/408 (22%)
Query: 137 TIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMT----- 191
I LA + LL A GL+ + + A +G+ Y+ + P ++ + P +T
Sbjct: 77 AIPLAISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWS--LIPVLTRDPKE 134
Query: 192 RGFLSSLPEVFINFGILLGYISN----YALSGLPEHINWRLMLGLAALPAIAVAFGVIAM 247
R L+S + G LL + L G + L + A+ A+
Sbjct: 135 RTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC--- 191
Query: 248 PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWK 307
+ K R + + K S L +M + + N
Sbjct: 192 -----FAGTKERVSVPPEQKEKVS---------LRDMFKALF-------KN--------- 221
Query: 308 ELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGI 367
RPL +L+ + +N A N ++YY F + + + +I I
Sbjct: 222 -------RPLLILLLLYL-LNALAMAVRNGLLLYY----FTYV-LGNAGLFSVLLLIGTI 268
Query: 368 AKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIA 427
A + FG++ +LG A+ L +L P ++ L +
Sbjct: 269 AAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL----------PPGSLWL-FLV 317
Query: 428 VCAAVSFFSIGLGPITWVYSSEI-----FPTKFRAQGSSLAI--SVNRLVSGIVAMSFLS 480
+ + W +++ + T R +G + ++ ++L +
Sbjct: 318 LVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGL 377
Query: 481 ISRAVTFGG---------------MFFILSGITAVGTVFFYFFLPETK 513
+ + +F ++ + A+ + F P T
Sbjct: 378 LLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLILRFYPLTD 425
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.91 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.88 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.83 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.79 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.69 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.64 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.61 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.58 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.56 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.54 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.54 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.53 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.53 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.52 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.51 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.51 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.5 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.49 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.48 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.47 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.45 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.43 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.43 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.43 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.42 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.41 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.41 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.41 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.4 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.4 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.4 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.39 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.39 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.39 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.39 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.38 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.38 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.38 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.38 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.38 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.38 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.37 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.36 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.36 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.35 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.34 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.33 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.33 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.33 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.33 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.31 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.31 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.3 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.3 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.3 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.29 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.27 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.27 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.26 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.26 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.26 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.25 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.25 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.25 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.24 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.23 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.23 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.21 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.2 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.18 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.15 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.15 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.14 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.14 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.13 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.13 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.08 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.07 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.05 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.04 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.04 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.04 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.04 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.03 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.02 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.01 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.0 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.99 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.99 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.98 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.97 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.88 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.88 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.84 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.72 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.68 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.68 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.67 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.66 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.62 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.62 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.56 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.53 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.53 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.53 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.49 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.49 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.48 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.47 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.45 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.4 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.28 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.26 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.21 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.21 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.19 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.15 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.14 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.87 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.76 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.68 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.67 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.52 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.43 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.41 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.36 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.25 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.01 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.79 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.65 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.54 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.52 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.41 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.31 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.26 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 96.18 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.82 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.82 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.72 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.54 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.49 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.34 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.12 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.61 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.51 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.71 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 89.67 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 88.51 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.34 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 86.25 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.0 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 84.65 | |
| PF02535 | 317 | Zip: ZIP Zinc transporter; InterPro: IPR003689 The | 82.38 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 80.04 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=366.57 Aligned_cols=434 Identities=19% Similarity=0.245 Sum_probs=326.7
Q ss_pred ccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHH
Q 009185 64 FNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAA 143 (541)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 143 (541)
..++.|.++++++++.+.++++...++.++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34666777778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC---
Q 009185 144 TFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL--- 220 (541)
Q Consensus 144 ~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--- 220 (541)
++++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877665421
Q ss_pred -------CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhh----HHH--HHHHHHHH
Q 009185 221 -------PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEE----AEF--RLNEMTRT 287 (541)
Q Consensus 221 -------~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~ 287 (541)
....+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.+++..+.+.. ... ........
T Consensus 321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~ 400 (742)
T TIGR01299 321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI 400 (742)
T ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence 01247999999988888888888888999999999999999999988887654321 111 11111110
Q ss_pred H--Hhhhh-hhccCCcCC----------c---chhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhc-
Q 009185 288 I--ADLGH-AASSNNWQG----------Q---GVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDA- 350 (541)
Q Consensus 288 ~--~~~~~-~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (541)
. .+..+ +.....+.. . ..+++++. +.++++ .+.+.+.+++..++++++..|+|.++...
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~---~~~~~~-tl~l~~~wf~~~~~yygl~~w~P~~~~~~~ 476 (742)
T TIGR01299 401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFN---PEVREI-TIKLMGVWFTLSFGYYGLSVWFPDMIKHLQ 476 (742)
T ss_pred hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcC---ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 000000000 0 01233333 344444 44455566778889999999999876431
Q ss_pred --C---------------------------------------C--------CC---------------------------
Q 009185 351 --G---------------------------------------I--------NS--------------------------- 354 (541)
Q Consensus 351 --~---------------------------------------~--------~~--------------------------- 354 (541)
. . .+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 556 (742)
T TIGR01299 477 ADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLF 556 (742)
T ss_pred HHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhc
Confidence 0 0 00
Q ss_pred -------------------------------------chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHH
Q 009185 355 -------------------------------------KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMA 397 (541)
Q Consensus 355 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 397 (541)
.........+..++.+++.+++|+++||+|||++++++.++.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa 636 (742)
T TIGR01299 557 ENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC 636 (742)
T ss_pred cccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0012334566778999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009185 398 VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMS 477 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 477 (541)
++++++++.... + .+++..++.+++..+..+...++++|.+|++.|++++|+.+...++|++++|.+
T Consensus 637 i~~ll~~~~~s~---------~----~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i 703 (742)
T TIGR01299 637 ISCFFLSFGNSE---------S----AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILI 703 (742)
T ss_pred HHHHHHHHHccH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777653321 1 112222233344444456677899999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009185 478 FLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKS 516 (541)
Q Consensus 478 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (541)
.+.+.+. +...++++.+++.++++++. .++||++++.
T Consensus 704 ~g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 704 FGSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 9988765 34566777776666655554 4668888764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=332.27 Aligned_cols=452 Identities=30% Similarity=0.499 Sum_probs=375.7
Q ss_pred CCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHh--------hhcC--CChhH----HHHHHHHHHHHHHHHHhhhhh
Q 009185 62 PRFNKYALTGAILASTNSILLGYDIGVMSGAILYIR--------DNLN--ITSIQ----VEVLVGSLNVCSLIGSLAAGK 127 (541)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~ 127 (541)
++..++....++.++++.+-.+|+...+++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.|.
T Consensus 3 ~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~ 82 (485)
T KOG0569|consen 3 PKLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGL 82 (485)
T ss_pred CCccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777778989999988888776443 3445 34433 467889999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHH
Q 009185 128 TSDCIGRRYTIVLAAATFLLGALLMGLA---PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFIN 204 (541)
Q Consensus 128 l~dr~Grr~~~~~~~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 204 (541)
++||+|||..+.++.++..++.++..++ +++.+++++|++.|+..|........++.|..|++.||....+.+.+..
T Consensus 83 la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~ 162 (485)
T KOG0569|consen 83 LADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV 162 (485)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH
Confidence 9999999999999999988888877765 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHh-cCChHHHHHHHHHhcCChhhHHHHHHH
Q 009185 205 FGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVM-KGRFADAKQALIKTSDSVEEAEFRLNE 283 (541)
Q Consensus 205 ~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (541)
+|.+++..++..-. +.+...|++.+.+..+++++..+...++||||+|+.. +++.+++++.++..++..++.+....+
T Consensus 163 ~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~ 241 (485)
T KOG0569|consen 163 IGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM 241 (485)
T ss_pred HHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH
Confidence 99999966654322 2255679999999999999999999999999999998 899999999999888765433322111
Q ss_pred HHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHH
Q 009185 284 MTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTV 363 (541)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (541)
..+. +.++..+.++.++++++++ +.+|++....+.+....++.+.+...+|...++.+.+..... +-+...
T Consensus 242 ~~e~------~~~~~~~~~~~sl~~~~~~--~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~-a~~an~ 312 (485)
T KOG0569|consen 242 LREI------EEEELEKKKQISLRQLLKN--PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE-AQYANL 312 (485)
T ss_pred HHHH------HHhccccccCCcHHHHhcC--cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 1111 1111222456678888885 568888888888999999999999999999999999875544 444888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccc
Q 009185 364 IMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPIT 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (541)
..++..++.++++.++.||+|||++++.+..++.+..+++.......+... .|..+..+...+.+...+..|.+|+.
T Consensus 313 ~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~ 389 (485)
T KOG0569|consen 313 GIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG---SWLSYLCIAAIFLFIISFAIGPGPIP 389 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhcCCCchh
Confidence 889999999999999999999999999999999998888877665433211 46666677788888889999999999
Q ss_pred eeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 009185 444 WVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLL 523 (541)
Q Consensus 444 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (541)
+-+.+|++|++.|..+.++...++++..++....+..+.+..|. ..|+.+.+.+++..+..++.+||||+|+..|+.++
T Consensus 390 ~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 390 WFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999986 78889999999999999999999999999999887
Q ss_pred hccc
Q 009185 524 FEDK 527 (541)
Q Consensus 524 ~~~~ 527 (541)
.+++
T Consensus 469 ~~~~ 472 (485)
T KOG0569|consen 469 LEKR 472 (485)
T ss_pred HHhC
Confidence 7665
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=351.78 Aligned_cols=441 Identities=20% Similarity=0.313 Sum_probs=319.5
Q ss_pred CCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhc-----CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHH
Q 009185 62 PRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNL-----NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRY 136 (541)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 136 (541)
.+..+..+.+++++.++.+.++++...++.+.|.+.+++ +.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 455566666778888899999999999999999887753 345667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHH
Q 009185 137 TIVLAAATFLLGALLMGLAPS------FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLG 210 (541)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 210 (541)
++.++.+++.+++++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.+++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcC-C-------------------CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChH-HHHHHHHH
Q 009185 211 YISNYALSG-L-------------------PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFA-DAKQALIK 269 (541)
Q Consensus 211 ~~~~~~l~~-~-------------------~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~-~~~~~~~~ 269 (541)
+.++..+.. . ...++||++|.+.++++++..+..+++||||+|+..+++.+ ++.+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 988776531 0 01248999999988888888888888999999998877764 35544444
Q ss_pred hcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhh
Q 009185 270 TSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKD 349 (541)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (541)
..+.+.+.+ .++. .+... +....+..++++++...+....+..+......+.....+++...|.|.++++
T Consensus 248 ~~~~~~~~~--~~~~----~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~ 317 (502)
T TIGR00887 248 VLQVKIEAE--PDEV----EKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA 317 (502)
T ss_pred HhccccccC--cccc----cchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence 332111100 0000 00000 0001122466665432111111233333334444455666777889999987
Q ss_pred cCCCCchh-----------hHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchh
Q 009185 350 AGINSKKQ-----------LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPA 418 (541)
Q Consensus 350 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (541)
.+...... .........++.+++.++.++++||+|||+.++++..+.++++.++.+...... .
T Consensus 318 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~------~ 391 (502)
T TIGR00887 318 IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------T 391 (502)
T ss_pred HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc------h
Confidence 76543211 111233445677778899999999999999988888777777766655332100 0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------cch
Q 009185 419 WAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV----------TFG 488 (541)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------g~~ 488 (541)
.. .....++...++..+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.. ++.
T Consensus 392 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (502)
T TIGR00887 392 HG---FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG 468 (502)
T ss_pred hH---HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence 00 11222222333445566777888899999999999999999999999999999999998743 344
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 009185 489 GMFFILSGITAVGTVFFYFFLPETKGKSLEDIGL 522 (541)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (541)
..+++++++++++.+.. +++||+++++++|+++
T Consensus 469 ~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 469 HVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 57788887777766554 6779999998877653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=323.67 Aligned_cols=412 Identities=14% Similarity=0.106 Sum_probs=330.2
Q ss_pred cccCCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHH
Q 009185 59 RKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTI 138 (541)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 138 (541)
+.++..+|+++-+.+.+.+++...++.+..++.+.|.+.+|.++|.+|+|++.+.+++.|.++..+.|.++||.++|+.+
T Consensus 18 ~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm 97 (448)
T COG2271 18 EIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM 97 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence 34567788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH--hh
Q 009185 139 VLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN--YA 216 (541)
Q Consensus 139 ~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~ 216 (541)
..|+++.++.+++++++++.+.+.++.+++|..+|...|.+...++.|++++|||+..++++++.++|..+.|++. ++
T Consensus 98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~ 177 (448)
T COG2271 98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF 177 (448)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888 77
Q ss_pred hcCCCCcchhHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhh
Q 009185 217 LSGLPEHINWRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAA 295 (541)
Q Consensus 217 l~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (541)
+. .+.+||..|++.++++++..+ .++..+|+|+..-.++-.+...+..+. .
T Consensus 178 ~~---~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~------------------------~- 229 (448)
T COG2271 178 FA---FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEI------------------------Y- 229 (448)
T ss_pred HH---hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhh------------------------h-
Confidence 77 677999999998888777655 556688888632211111100000000 0
Q ss_pred ccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 009185 296 SSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLI 375 (541)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (541)
.+++..+..+.++.+. ...+++|.+|.+++..++.+..-+++..|.|.|+.+..+.+...+....+.+-.++++|.++
T Consensus 230 ~~~~~~~~ls~~~i~~--~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll 307 (448)
T COG2271 230 EEEKENEGLTAWQIFV--KYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLL 307 (448)
T ss_pred hhhccCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 0000011022333333 25688999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHhhc--CCchHHHHhHH-HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 376 SALYLDHF--GRRPLLMLGST-GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 376 ~g~l~d~~--g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.|+++||+ |||....+.+. ...++.+.+...... ......+..+..|++..+..-+.-..+.|..|
T Consensus 308 ~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~-----------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~p 376 (448)
T COG2271 308 AGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNG-----------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVP 376 (448)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCc-----------cHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc
Confidence 99999996 56665543333 333333333221111 11244445555555555555566677789999
Q ss_pred chhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 453 TKFRAQGSSLAISVNRL-VSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
++..|++.|+...+.++ |.+.+....|.+.|..||...|.++.+.++++.+++....+.
T Consensus 377 K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 377 KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred HhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999 888899999999899999999999888888877776555543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=337.28 Aligned_cols=439 Identities=28% Similarity=0.506 Sum_probs=322.0
Q ss_pred cchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhc--------CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHH
Q 009185 65 NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNL--------NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRY 136 (541)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 136 (541)
.+....+++++.++.+.++++...+++..|.++++| +.++.+.+++.+++.++..++++++|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 344555567777888999999999999999999988 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHH
Q 009185 137 TIVLAAATFLLGALLMGLA------------PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFIN 204 (541)
Q Consensus 137 ~~~~~~~~~~i~~~~~~~a------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 204 (541)
+++++.++++++.++++++ ++++.++++|+++|++.|+..+...++++|++|+++|++++++.+.+..
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999999999988863 2356788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC-----CCCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHH
Q 009185 205 FGILLGYISNYALSG-----LPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEF 279 (541)
Q Consensus 205 ~G~~~g~~~~~~l~~-----~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (541)
+|.++++++++.+.. ..+..|||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+..+. ..
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQ 245 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HH
Confidence 999999888776542 114579999999988887777777788999999987777777666555554332211 11
Q ss_pred HHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhH
Q 009185 280 RLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLV 359 (541)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (541)
..++...... . +.. ..+..+ .......+..+....+....+.+...++.|.+.++.+... ....
T Consensus 246 ~~~~~~~~~~---~----~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~ 309 (479)
T PRK10077 246 ALQEIKHSLD---H----GRK----TGGKLL----MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-DIAL 309 (479)
T ss_pred HHHHHHHHHH---H----hhh----hhhhhc----chhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-chHH
Confidence 1111111100 0 000 000000 0011111222223333344455566778888888766543 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccc
Q 009185 360 GVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGL 439 (541)
Q Consensus 360 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (541)
......++..+++.++.++++||+|||+.++.+.++.+++.+++........ .+. ......++....+....
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA------PGI--VALLSMLFYVAAFAMSW 381 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc------ccH--HHHHHHHHHHHHHhccc
Confidence 4666778889999999999999999999999999988888777765432110 011 11222222233333344
Q ss_pred cccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSIS------RAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 440 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.|..+.++.|.+|++.|+++.|+.+...+++..+++.+.+.+. +..++...+++.+++++++.++.+++.+|+|
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 5777899999999999999999999999999999987776544 4667777888888887888777777889999
Q ss_pred CCCHHHHHHHhcccC
Q 009185 514 GKSLEDIGLLFEDKA 528 (541)
Q Consensus 514 ~~~~~~~~~~~~~~~ 528 (541)
+++.+|.++..++..
T Consensus 462 ~~~~~~~~~~~~~~~ 476 (479)
T PRK10077 462 GKTLEEMEALWEPET 476 (479)
T ss_pred CCCHHHHHHHHhhcc
Confidence 998888777665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=334.63 Aligned_cols=440 Identities=36% Similarity=0.661 Sum_probs=329.0
Q ss_pred hHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCC--------hhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHH
Q 009185 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNIT--------SIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTI 138 (541)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 138 (541)
..+...+++.++.++..++....++..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~ 104 (481)
T TIGR00879 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL 104 (481)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence 3344445666677888899999999999888888877 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH-
Q 009185 139 VLAAATFLLGALLMGLA---PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN- 214 (541)
Q Consensus 139 ~~~~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~- 214 (541)
+.+.++++++.+++.++ .+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 184 (481)
T TIGR00879 105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS 184 (481)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999654 45668999999999999999999999999999999999999999999999999999998
Q ss_pred --hhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 009185 215 --YALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLG 292 (541)
Q Consensus 215 --~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (541)
.... +..+||+.|++.++..++..+..+++||+|++...+++.++..+...+..+.++......+.. .......
T Consensus 185 ~~~~~~---~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 260 (481)
T TIGR00879 185 GKVSLN---NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDEL-ELIDIKR 260 (481)
T ss_pred HhhcCC---CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHH-HHHHHHH
Confidence 6555 677999999997777777777778899999887766666655544443322211111111100 0000000
Q ss_pred hhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 009185 293 HAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSF 372 (541)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (541)
.... ...+..+++......+ .+.+.++...+..+..........++.|.++++.+.+. ...+....+..++.+++
T Consensus 261 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 335 (481)
T TIGR00879 261 SIEK---RSVQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAF 335 (481)
T ss_pred HHHH---hhccccHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence 0000 0111124444443222 45666677777777666667777888898888876655 55666778888999999
Q ss_pred HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 373 VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 373 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.++.+++.||++||+.+.++.++.+++++++.+.......... .......+....+..+++..+..+....+..|.+|
T Consensus 336 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (481)
T TIGR00879 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS--KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413 (481)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc--cchhHHHHHHHHHHHHHHHccccCeehhhhhccCC
Confidence 9999999999999999988887777777666543221111000 00011123333444455555666777788899999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSL 517 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (541)
++.|+++.|+.+...+++++++|.+.+.+.+..++...|++.+++++++.++.+++.+|+++++.
T Consensus 414 ~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 99999999999999999999999999999999999999999998888888887777787776554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=329.06 Aligned_cols=453 Identities=38% Similarity=0.685 Sum_probs=364.0
Q ss_pred cchHHHHHHHHHHhhhhhhcc--cchhhhhHHHHhhhcC-----CCh--hHHHHHHHHHHHHHHHHHhhhhhhhccchhH
Q 009185 65 NKYALTGAILASTNSILLGYD--IGVMSGAILYIRDNLN-----ITS--IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRR 135 (541)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 135 (541)
.+..........++.+..+++ .+..++....+.++.. .+. .+.+|+.+.+.++..++++++|+++|++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344445556666777777776 6677777777777432 222 3559999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHh
Q 009185 136 YTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNY 215 (541)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 215 (541)
+.++++.+++.+|.+++++++|+++++++|+++|+|.|+.....+.+++|..|++.||...+..+....+|..++..++.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977777
Q ss_pred hhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhhhh
Q 009185 216 ALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDS-VEEAEFRLNEMTRTIADLGHA 294 (541)
Q Consensus 216 ~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 294 (541)
...+. ..+||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.+..+. +.+.+....+.... ..
T Consensus 200 ~~~~~--~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~-----~~ 272 (513)
T KOG0254|consen 200 GTSKV--YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK-----LL 272 (513)
T ss_pred hhccC--CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH-----HH
Confidence 76522 159999999999999988888888999999999999999999999888773 23333333333200 01
Q ss_pred hccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 009185 295 ASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVL 374 (541)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (541)
.....+..+..+++++. +..+++.++.+.+..+.+..+.....+|.+.+++..+..+.. .......++..+++..
T Consensus 273 ~~~~~~~~~~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~ 347 (513)
T KOG0254|consen 273 VEAEVAEGKASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTL 347 (513)
T ss_pred HhhhcccccccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHH
Confidence 11111112223555554 457788888899999999999999999999999999887654 3356677888888888
Q ss_pred HHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch
Q 009185 375 ISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK 454 (541)
Q Consensus 375 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 454 (541)
++.++.||+|||+.++.+...+.++.++++........+........++.+...++....+..+..|+.+.+.+|.+|.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 89999999999999999999999999998887665433211223445567777788888899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHHhcccCC
Q 009185 455 FRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTV-FFYFFLPETKGKSLEDIGLLFEDKAH 529 (541)
Q Consensus 455 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (541)
.|+.+.++....+++...+....+..+.+..+....|..+++++.+..+ ..++++||+|+++.+|+++..++...
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 9999999999999998888877777776665545677777777777777 77889999999999999887665433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=301.06 Aligned_cols=375 Identities=18% Similarity=0.160 Sum_probs=307.0
Q ss_pred HHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Q 009185 69 LTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLG 148 (541)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 148 (541)
+..++.+.++.|..+........++|++++|+|+|..+.|++.|.|.++++++.++...+.||+.||++++..+.++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 34446667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHH
Q 009185 149 ALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRL 228 (541)
Q Consensus 149 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~ 228 (541)
++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|..++.++. +.+|||+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig---~~~GWR~ 168 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG---QLFGWRA 168 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH---HHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhH
Q 009185 229 MLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWK 307 (541)
Q Consensus 229 ~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (541)
.|++.+.++++..+ .+..+| |+.. +++. +...+
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~~------------------------------------------~~~~~ 202 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSEI--SGSL------------------------------------------PGPLR 202 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CccC--CCCC------------------------------------------Ccchh
Confidence 99998888877665 556688 1100 0000 00011
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 009185 308 ELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRP 387 (541)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 387 (541)
+. .+.+++|.++...+..++.+.+.+...+|+..++++..+.+.....+....++++.++|+.++|++.|| +.|+
T Consensus 203 ~~----~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~ 277 (394)
T COG2814 203 TL----LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR 277 (394)
T ss_pred HH----HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence 11 135778888888888888999999999999999999998888888889999999999999999999999 8888
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHH
Q 009185 388 LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVN 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 467 (541)
.+.....+.++..+.+.+.... .+ ......+..++.............++. -++.+..+.++.....
T Consensus 278 ~l~~~~~l~a~~~l~l~~~~~~--------~~----~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~ 344 (394)
T COG2814 278 ALIAALLLLALALLALTFTGAS--------PA----LALALLFLWGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAF 344 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcch--------HH----HHHHHHHHHHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHH
Confidence 8888877777777776654332 11 111111123333222222333334443 2466899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 468 RLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
|+|..+|..+.|.+.++.|+....++.+.+.+++.++.+...+
T Consensus 345 nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 345 NLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888888888887777655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=332.75 Aligned_cols=411 Identities=12% Similarity=0.015 Sum_probs=295.1
Q ss_pred cccCCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHH
Q 009185 59 RKKPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTI 138 (541)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~ 138 (541)
+.++.++|..+.++.++++++++.++++..+++..|.+.+|+|++.++.|++.+++.+++++++++.|+++||+|||+++
T Consensus 18 ~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l 97 (467)
T PRK09556 18 VQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL 97 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH
Confidence 33445666677677888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHH
Q 009185 139 VLAAATFLLGALLMGL-----APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYIS 213 (541)
Q Consensus 139 ~~~~~~~~i~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 213 (541)
..+.+++++++++.++ ++|++.+++.|+++|++.+...|...+++.||+|+++||++++++..+.++|.++++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 98 PFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence 9998888887777665 68999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcCCCCcchhHHHHHhhhHHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 009185 214 NYALSGLPEHINWRLMLGLAALPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLG 292 (541)
Q Consensus 214 ~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (541)
..++.......+||..|.+.++++++..+. +++.+++|+... ..++ ++... +.... +
T Consensus 178 ~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---~~~~-~~~~~---~~~~~-~-------------- 235 (467)
T PRK09556 178 ALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---WGKA-EEIFG---EPISE-E-------------- 235 (467)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---CCCh-hhccc---Cccch-h--------------
Confidence 876652101126999998877776665444 444677664211 0000 00000 00000 0
Q ss_pred hhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 009185 293 HAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSF 372 (541)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (541)
.+.. ...+...++.+. ...++++.+|...+..++..........|.|.|+++..+.+...++.......++.+++
T Consensus 236 --~~~~-~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig 310 (467)
T PRK09556 236 --DKET-ESTDMTKWQIFV--EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVG 310 (467)
T ss_pred --hhcc-ccccCcHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 000001111111 01356677888888888777778888999999998876667777777788888999999
Q ss_pred HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 373 VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 373 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.++.|+++||++||+.+.....+..++..++.+... ...+. ..+..+..+++..+..........|.+|
T Consensus 311 ~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~G~~~~~~~~~~~~~~~~~~p 379 (467)
T PRK09556 311 SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-------TSEYM----YLASLFALGFLVFGPQLLIGVAAVGFVP 379 (467)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-------CcHHH----HHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 999999999999988776554444333222222110 00111 1112222222222221222245569999
Q ss_pred chhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH------------hhcchhHHHHHHHHHHHHHHHHHh
Q 009185 453 TKFRAQGSSLAISVNRL-VSGIVAMSFLSISR------------AVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
++.+|++.|+.+..+++ |++++|.+.|.+.| ..+|...|.++.++++++.+..+.
T Consensus 380 ~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 380 KKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 66999999999999 567888888887777776655543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=319.72 Aligned_cols=398 Identities=18% Similarity=0.182 Sum_probs=272.9
Q ss_pred HHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhH-HHH-----HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 72 AILASTNSILLGYDIGVMSGAILYIRDNLNITSIQ-VEV-----LVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
++..+++.+++++|...++...|.+.++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.++++++
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~ 97 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIM 97 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 35667788999999999999999999999754322 222 257788999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHH--------HHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhh
Q 009185 146 LLGALLMGLAPSFLF--------LMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
+++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|..+++.+...+
T Consensus 98 ~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 98 SISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 889999999999999999999999999999999999999988888888887666544
Q ss_pred cCC-----CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 009185 218 SGL-----PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLG 292 (541)
Q Consensus 218 ~~~-----~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (541)
... ...+|||++|++.++++++..++...+||+|++...+++.++..+ +
T Consensus 178 ~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------~------------------- 231 (490)
T PRK10642 178 STIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------E------------------- 231 (490)
T ss_pred HHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------c-------------------
Confidence 310 125799999999777766666666779999986532211110000 0
Q ss_pred hhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 009185 293 HAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSF 372 (541)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (541)
. ....++.++++.++. .+ +.+.......++....++.+..|.|.|+++..+.+............++.+++
T Consensus 232 --~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~ 302 (490)
T PRK10642 232 --G--LQDGPKVSFKEIATK----HW-RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFV 302 (490)
T ss_pred --c--ccccccCCHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 000011223333331 11 12222222333445667778889999997665555555565667778889999
Q ss_pred HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 373 VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 373 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.++.|+++||+|||+.+..+.++..++...+...... ..... +....+..+++.....+....+..|.+|
T Consensus 303 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~g~~~~~~~g~~~~~~~~~~p 372 (490)
T PRK10642 303 QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS------NVIGL----IFAGLLMLAVILNCFTGVMASTLPAMFP 372 (490)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC------CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999998877765444332221111110 00011 1111111111111111233456678999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKGK 515 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (541)
++.|+++.|+.+....+++.++|.+.+.+.+..+ +...+++..+.++++.+.. ++.||++++
T Consensus 373 ~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~ 435 (490)
T PRK10642 373 THIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANR 435 (490)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence 9999999998777788888999999999887654 4555555555555555444 456776554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=318.62 Aligned_cols=404 Identities=14% Similarity=0.127 Sum_probs=291.4
Q ss_pred HHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH
Q 009185 70 TGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGA 149 (541)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 149 (541)
.+.....++.++..++...++..+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 33455556667777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHH
Q 009185 150 LLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLM 229 (541)
Q Consensus 150 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~ 229 (541)
+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +.+|||+.
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~---~~~gw~~~ 179 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA---LHYGWRYG 179 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 77899999
Q ss_pred HHhhhHHHHHHH-HHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHH
Q 009185 230 LGLAALPAIAVA-FGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKE 308 (541)
Q Consensus 230 f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (541)
|++.+++.++.. +..++++|+|++...+...+...+. .+. . .+....+.++++
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~---~----------------------~~~~~~~~~~~~ 233 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LEL---A----------------------QQQEGAGLSRKE 233 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-ccc---c----------------------hhccccCCChhh
Confidence 998777665543 3455678877532111100000000 000 0 000000011222
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CCc
Q 009185 309 LLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF--GRR 386 (541)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~ 386 (541)
.++ ...++++.++.+.+..++.......+..|.|.|+.+..+.+...++.......++.++++++.|++.||+ ++|
T Consensus 234 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r 311 (434)
T PRK11663 234 ILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNR 311 (434)
T ss_pred hHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCc
Confidence 111 0134456677777766666677778888999999766566667777788888999999999999999998 333
Q ss_pred hHHH-HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHH
Q 009185 387 PLLM-LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465 (541)
Q Consensus 387 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 465 (541)
+... .......+....+.... . ...+. ....++..+++..+..........|.+|++.|++++|+.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 380 (434)
T PRK11663 312 GPMNLIFAAGILLSVGSLWLMP-F------ASYVM----QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGL 380 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHcc-c------ccHHH----HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHH
Confidence 3322 22112222221111111 0 00111 11112222222222222223456788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 009185 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGK 515 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (541)
..++|++++|.+.|.+.+..|+...|.+.+++++++.+..+...++++++
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999999999988888888777665555544443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=278.37 Aligned_cols=431 Identities=21% Similarity=0.266 Sum_probs=331.1
Q ss_pred CccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Q 009185 63 RFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAA 142 (541)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 142 (541)
...|.++...+....+..-+.+.....+.+.|.+.+.+|.+..|..++......|..+++..+|.++|++|||+.+.+..
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 34555666666777777777776667778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCC
Q 009185 143 ATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPE 222 (541)
Q Consensus 143 ~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 222 (541)
+..++..++.++++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|+..+-.. ..+.+|.++...+..... .
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm---~ 225 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM---S 225 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH---H
Confidence 99999999999999999999999999999998 899999999999999999877776 899999999999999888 8
Q ss_pred cchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhH-------HHHHHHHHHHHHhhhhhh
Q 009185 223 HINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEA-------EFRLNEMTRTIADLGHAA 295 (541)
Q Consensus 223 ~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 295 (541)
++||||.......+..+.+..++++||||++...+++++++.+.++++...+... .....+..+...++++..
T Consensus 226 ~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~ 305 (528)
T KOG0253|consen 226 NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSK 305 (528)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhh
Confidence 8999999999888888888999999999999999999999998888765433211 011111111222333333
Q ss_pred ccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC-------------------CCCch
Q 009185 296 SSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG-------------------INSKK 356 (541)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 356 (541)
....+.......+++. +.+++..+....+ ++...+.+++........++... -.+..
T Consensus 306 ~~a~ke~rg~~~nLls---p~lrkttlllw~i-wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~ 381 (528)
T KOG0253|consen 306 SSAAKEVRGGTTNLLS---PKLRKTTLLLWRI-WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVA 381 (528)
T ss_pred hccccccccchHhhcC---hHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccch
Confidence 3444444555555554 4566666555544 34455555555555555554332 01111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHh
Q 009185 357 QLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFS 436 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (541)
.-..-.....+....|.++.+++.||+|||+.+...++++++..+++......+ ...+..+..-++.
T Consensus 382 ~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn-------------~~tvllf~arafi 448 (528)
T KOG0253|consen 382 KDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN-------------AYTVLLFTARAFI 448 (528)
T ss_pred hHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc-------------hhHHHHHHHHHHH
Confidence 122245567788999999999999999999999999998888877776654332 2233333344444
Q ss_pred ccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009185 437 IGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKS 516 (541)
Q Consensus 437 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (541)
.+.+...++|..|++|+..|+++.|.....+++|+++.|.+. +........+..+++++++++.+...++--|+|+|.
T Consensus 449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 555567899999999999999999999999999999999888 444445556788888888888888877777898876
Q ss_pred H
Q 009185 517 L 517 (541)
Q Consensus 517 ~ 517 (541)
.
T Consensus 527 l 527 (528)
T KOG0253|consen 527 L 527 (528)
T ss_pred C
Confidence 3
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=311.91 Aligned_cols=399 Identities=15% Similarity=0.089 Sum_probs=284.7
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
|.++..+++++++++++++|+..++...|.+++|+|++.++.|++.+++.+++++++++.|+++||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 33444557777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC---CC
Q 009185 146 LLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL---PE 222 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---~~ 222 (541)
+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++++... .+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887621 13
Q ss_pred cchhHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHH-hcCChhhHHHHHHHHHHHHHhhhhhhccCCc
Q 009185 223 HINWRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIK-TSDSVEEAEFRLNEMTRTIADLGHAASSNNW 300 (541)
Q Consensus 223 ~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (541)
..|||+.|++.++++++..+ .++++||+|+.. +.-.+++++...+ ...+.. +.+ +.+....
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~ 226 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQL--------------TLE-QPEGAFA 226 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccc--------------ccc-ccccccc
Confidence 46999999998777765544 556689987421 0000111111000 000000 000 0000000
Q ss_pred CCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 301 QGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG-INSKKQLVGVTVIMGIAKTSFVLISALY 379 (541)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l 379 (541)
+.+..++...+ ..+++.++...+.+++....++.+..|.|.++++.+ +.+....+.......++.+++.++.|++
T Consensus 227 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l 302 (412)
T TIGR02332 227 HAAMPQRSMLR----EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRH 302 (412)
T ss_pred cccccHHHHHH----HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 00011111111 122355677777777778888889999999998853 4455666767888999999999999999
Q ss_pred HhhcCCchHH-HHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhh
Q 009185 380 LDHFGRRPLL-MLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQ 458 (541)
Q Consensus 380 ~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 458 (541)
+||+++|+.. .....+..++. ++... . . . .... ....... ++......+..+....|.+|++.|++
T Consensus 303 ~dr~~~r~~~~~~~~~~~~~~~-~~~~~--~-~----~-~~~~--~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~ 369 (412)
T TIGR02332 303 SDRLKERKHHTALPYLFAAAGW-LLASA--T-D----H-NLIQ--LLGIIMA--SMGSFSAMAIFWTTPDQSISLQARAI 369 (412)
T ss_pred hcccCccHHHHHHHHHHHHHHH-HHHHh--c-C----C-HHHH--HHHHHHH--HHHhhhhhhHHHhhcccccchHHHHH
Confidence 9999977653 33333333322 22111 1 0 0 1110 1111111 11111122334455577889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHH
Q 009185 459 GSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGIT 498 (541)
Q Consensus 459 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 498 (541)
++|+.+...++|++++|.+.|.+.+..| |...+.+.+++.
T Consensus 370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999999999875 777777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=306.66 Aligned_cols=377 Identities=19% Similarity=0.235 Sum_probs=258.0
Q ss_pred HHHHHHHhhhhhhcccchhhhhHHHHhhhcC---CChhHHHHHHHHH---HHHHHHHHhhhhhhhccchhHHHHHHHHHH
Q 009185 71 GAILASTNSILLGYDIGVMSGAILYIRDNLN---ITSIQVEVLVGSL---NVCSLIGSLAAGKTSDCIGRRYTIVLAAAT 144 (541)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s~~---~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 144 (541)
.+...+++.+++++|...++...|.+.++++ .+..+.+...+.+ +++..++++++|+++||+|||+++..++++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 102 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM 102 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4456667888999999999999999999985 4555554444444 445559999999999999999999999999
Q ss_pred HHHHHHHHHhcccHH--------HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhh
Q 009185 145 FLLGALLMGLAPSFL--------FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYA 216 (541)
Q Consensus 145 ~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 216 (541)
++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|+++.++...+...|.++++++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 588999999999999999999999999999999999999988888888888877655
Q ss_pred hcCCC-----CcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhh
Q 009185 217 LSGLP-----EHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADL 291 (541)
Q Consensus 217 l~~~~-----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (541)
+.... ..+|||++|++.++++++..+....+||+|++...+ + +
T Consensus 183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~-------~---~---------------------- 230 (432)
T PRK10406 183 LQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA-------L---K---------------------- 230 (432)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-------h---c----------------------
Confidence 43210 257999999998888877666666678876421000 0 0
Q ss_pred hhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHH-HHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 009185 292 GHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFF-MQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKT 370 (541)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (541)
++.+++++ ++++..+...+... .....++.+..|.|.|+++..+.+....+....+..++..
T Consensus 231 ----------~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~ 293 (432)
T PRK10406 231 ----------EAGSLKGL-------WRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFM 293 (432)
T ss_pred ----------ccccHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00112222 23334444333333 3355667788899999977655566666656777777788
Q ss_pred HHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeeccc
Q 009185 371 SFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEI 450 (541)
Q Consensus 371 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (541)
++.++.|+++||++||+.+.++.++.++....+....... ...+.....+....+..+. ..+....+.+|.
T Consensus 294 i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~ 364 (432)
T PRK10406 294 LIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV-----SSPYAAFGLVMCALLIVSF----YTSISGILKAEM 364 (432)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 8889999999999999887766554433322221111100 0011111011111111111 113445678899
Q ss_pred CCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHH
Q 009185 451 FPTKFRAQGSSLAISVNRL-VSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 451 ~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 506 (541)
+|++.|++++|+.+..+++ .+...|.+.+ +.+..| +...+++.+++.+++.+..+
T Consensus 365 fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 365 FPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred CCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988775 3445666666 445556 43445555555555555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=307.09 Aligned_cols=381 Identities=19% Similarity=0.199 Sum_probs=285.6
Q ss_pred hHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH
Q 009185 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFL 146 (541)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 146 (541)
+.+..+.++++..++++++....++..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 55556677777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchh
Q 009185 147 LGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINW 226 (541)
Q Consensus 147 i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gw 226 (541)
++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.++..+. +..+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~ 168 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA---GDAAW 168 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887 77899
Q ss_pred HHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcch
Q 009185 227 RLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGV 305 (541)
Q Consensus 227 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (541)
|+.|++.+++.++..+ ...++||+|++...+.+.++.+. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------------~ 209 (406)
T PRK11551 169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---------------------------------------V 209 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---------------------------------------h
Confidence 9999987665554443 45568888764322111000000 0
Q ss_pred hHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009185 306 WKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGR 385 (541)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 385 (541)
.+...+ ..+.+..+......+......+....|.|.++++.+ .+....+.......++.+++.++.|++.||+|+
T Consensus 210 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 284 (406)
T PRK11551 210 LRALFG----EGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRP 284 (406)
T ss_pred HHHHhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000000 001111222223333334455566778899998864 455566668888889999999999999999999
Q ss_pred chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHH
Q 009185 386 RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 465 (541)
|+.+..+.+...+++.++..... .+ .+....+..+++..+..+...++..|.+|++.|+++.|+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 351 (406)
T PRK11551 285 RRVVLLIYAGILASLAALAAAPS---------FA----GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA 351 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---------HH----HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence 99887766655555444433211 11 122223333344444456667888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHh
Q 009185 466 VNRLVSGIVAMSFLSISRAVTF-GGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 507 (541)
..++++.++|.+.|.+.+..+. ...++....+.+++.+..+.
T Consensus 352 ~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 352 VGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887553 34444444444444444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=302.57 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=272.9
Q ss_pred HHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 009185 76 STNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA 155 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a 155 (541)
.++.+..........+.+|.+++|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 94 (390)
T PRK03545 15 ALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA 94 (390)
T ss_pred HHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33334433444456677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhH
Q 009185 156 PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235 (541)
Q Consensus 156 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~ 235 (541)
+|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+. +..|||+.|++.++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~ 171 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG---QYLGWRTTFLAIGG 171 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH---HHhcHHHHHHHHHH
Confidence 999999999999999999888999999999999999999999999999999999999999988 77899999999877
Q ss_pred HHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 236 PAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 236 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
+.++..+. ...+||+|+ ++.++ .+ ..++
T Consensus 172 ~~~l~~~~~~~~~~~~~~-----~~~~~-~~---------------------------------------~~~~------ 200 (390)
T PRK03545 172 GALITLLLLIKLLPLLPS-----EHSGS-LK---------------------------------------SLPL------ 200 (390)
T ss_pred HHHHHHHHHHHhCCCCCC-----CCcch-HH---------------------------------------HHHH------
Confidence 76665443 344666532 00000 00 0011
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGST 394 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 394 (541)
.++++.++......++.....+....+.+.++++..+.+....+.......++.++++++.+++.||+++|... .+..
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~ 278 (390)
T PRK03545 201 -LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIA 278 (390)
T ss_pred -HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHH
Confidence 22333343333333333344444556777777776666667777788888999999999999999999987643 4444
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHH
Q 009185 395 GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIV 474 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 474 (541)
+..++...+..... ..+ .+....+..++......+.....+.+..| +.++.++|+.+...++|..+|
T Consensus 279 ~~~~~~~~l~~~~~--------~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G 345 (390)
T PRK03545 279 LLLVCLLLLLPAAN--------SEW----HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAG 345 (390)
T ss_pred HHHHHHHHHHHHhc--------hHH----HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 44333333222111 011 22223333333333334445566667766 578999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 475 AMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 475 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
|.+.|.+.+..|++..++..+++.+++.++.+...+
T Consensus 346 ~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 346 ALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999888888877665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=304.41 Aligned_cols=391 Identities=16% Similarity=0.150 Sum_probs=283.7
Q ss_pred cchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Q 009185 65 NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAAT 144 (541)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 144 (541)
+++.+.....++++++.++++....+++.|.+++++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34445555777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009185 145 FLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI 224 (541)
Q Consensus 145 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~ 224 (541)
.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~---~~~ 163 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV---PVW 163 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 444
Q ss_pred h--hHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCC
Q 009185 225 N--WRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQG 302 (541)
Q Consensus 225 g--wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (541)
+ ||+.|++.+++.++..+....+||++++...+++.++..+..++..+.........
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 222 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIV--------------------- 222 (405)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhh---------------------
Confidence 4 99999987777666666666788887543222211111111111100000000000
Q ss_pred cchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 303 QGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382 (541)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 382 (541)
+.......+. ...+.+.+....+..............+.|.++.+..+.+....+.+.....++.+++.++.+++.||
T Consensus 223 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 300 (405)
T TIGR00891 223 MTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW 300 (405)
T ss_pred hhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00111222222333333334444566778888877666677777778888999999999999999999
Q ss_pred cCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHH
Q 009185 383 FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL 462 (541)
Q Consensus 383 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 462 (541)
++||+.+.++..+..+....+... . ...+ .+....+..+++..+..+....++.|.+|++.|++++|+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 368 (405)
T TIGR00891 301 LGRRKAYVCSLLAGQLLIIPVFAI-G-------ANVA----VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF 368 (405)
T ss_pred hCchhhhHHHHHHHHHHHHHHHHh-C-------CchH----HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhH
Confidence 999998877765543322222111 0 0011 112222333334444445666788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chhHHHH
Q 009185 463 AISVNRLVSGIVAMSFLSISRAVT-FGGMFFI 493 (541)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 493 (541)
.+...++++.++|++.|.+.+..| |...+..
T Consensus 369 ~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 369 TYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999999999988 6554433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=317.43 Aligned_cols=390 Identities=22% Similarity=0.330 Sum_probs=283.7
Q ss_pred hhHHHHhhhcCCC---hhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 91 GAILYIRDNLNIT---SIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 91 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
+..|.+.+|+|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++++++++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcC
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+..+++
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999988775 49999999888888877777889
Q ss_pred CCChHHHHhcCChHHHHHHHHHhcCChhhHH-HHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHH
Q 009185 248 PESPRWLVMKGRFADAKQALIKTSDSVEEAE-FRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIG 326 (541)
Q Consensus 248 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (541)
||+|+|+..+++.+++.+..++..+.+.... ....+. . . +.+.....++..++++++. +.++. ..+...
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~l~~~--~~~~~-~~~~~~ 333 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL--S---L--EKDLSSSKKQYSFLDLFRT--PNLRK-TTLCLM 333 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhh--h---h--hhhhhhccCCCcHHHHhCC--hHHHH-HHHHHH
Confidence 9999999999988887777665432211100 000000 0 0 0000001112345555543 11222 222222
Q ss_pred HHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHH
Q 009185 327 VNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406 (541)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 406 (541)
+.++.....++....+.+ ..+.. ........++..+++.++.+++.||+|||+.+.++.++.+++++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~ 405 (505)
T TIGR00898 334 MLWFTTAFSYYGLVLDLG----NLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV 405 (505)
T ss_pred HHHHHHHHHHHHHhcccc----ccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333332 22222 2224456678888999999999999999999998888887777666553
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 407 SKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 486 (541)
... ..+ ......+..+++..+..+..+.+.+|.+|++.|++++|+.++...+|++++|.+.+ + +..+
T Consensus 406 ~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~ 472 (505)
T TIGR00898 406 PVD-------LYF----LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKW 472 (505)
T ss_pred CCC-------chH----HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHH
Confidence 211 011 11111222222223333566788899999999999999999999999999999998 3 4455
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 009185 487 FGGMFFILSGITAVGTVFFYFFLPETKGKSLE 518 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (541)
+...+.+++++.+++.++. +++||+++++++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 473 LFLPLVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 6677778777777766654 567888876654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=296.16 Aligned_cols=352 Identities=13% Similarity=0.111 Sum_probs=254.0
Q ss_pred ccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 009185 85 DIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAG 164 (541)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~ 164 (541)
....+++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.++++
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999998776665555544433444799999999
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-H
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF-G 243 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~-~ 243 (541)
|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++++++.+. +..|||+.|++.++++++..+ .
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---TAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHHHHHHHHHHHHHHHH
Confidence 9999999985 5566677799999999999999999999999999999999998 788999999997777665544 5
Q ss_pred HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHH
Q 009185 244 VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIA 323 (541)
Q Consensus 244 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
++++||+|++. ++..+ .+ ...+ .++ +.++++.+|
T Consensus 162 ~~~lp~~p~~~---~~~~~-----------~~---~~~~----------------------~~~-------~ll~~~~~~ 195 (368)
T TIGR00903 162 LAALPALPFQA---AEGFG-----------FK---DAVK----------------------EFG-------ALAGRKDLW 195 (368)
T ss_pred HHHcCCCCCCC---CCCcc-----------hH---HHHH----------------------HHH-------HHHcChhHH
Confidence 56789987531 10000 00 0000 011 234567788
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hHHHH-hHHHHHHH
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR---PLLML-GSTGMAVS 399 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~ 399 (541)
.+.+..++....++.+..|+|.|+++.+. +.. .+....+..+.+.++ .++++||..|| +.... ...+.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 196 IIGAILGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 88888888899999999999999988654 433 443444444444444 57788887543 33222 23333332
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
+..+..... .+ ..+......+++.....+..+++.+|.+|++.|+++.|+.+..+++++.++|.+.+
T Consensus 271 ~~~~~~~~~---------~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 271 FLALAFELN---------RL----ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM 337 (368)
T ss_pred HHHHHHccc---------cH----HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence 222221110 11 11222222333444444556688899999999999999999999999999999998
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009185 480 SISRAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 480 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
.+.. +....|.++++..+++.+..+
T Consensus 338 ~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 338 LFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 8773 666778888877777766653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=296.72 Aligned_cols=376 Identities=14% Similarity=0.098 Sum_probs=279.3
Q ss_pred HHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Q 009185 69 LTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLG 148 (541)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 148 (541)
|.....++++.++... ....++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 3333444454444333 366789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc-hhH
Q 009185 149 ALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI-NWR 227 (541)
Q Consensus 149 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~-gwr 227 (541)
++++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.+++.+. ++. +||
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~---~~~~~w~ 163 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV---QHSETWY 163 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCHH
Confidence 9999999999999999999999999999999999999997 78999999999999999999999999887 554 899
Q ss_pred HHHHhhhHHHHHHHHHHhcCC-CChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchh
Q 009185 228 LMLGLAALPAIAVAFGVIAMP-ESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVW 306 (541)
Q Consensus 228 ~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (541)
+.+.+.++..++..+..+... +.|+ + ++ + .+. ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~----------------------------------~---~~~-~~ 198 (393)
T PRK09705 164 QTLAWWALPAVVALFAWWWQSAREVA-----S--SH----------------------------------K---TTT-TP 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc-----c--cc----------------------------------C---CCc-CC
Confidence 988776555544433332221 1110 0 00 0 000 00
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 009185 307 KELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR 386 (541)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 386 (541)
.+.++++..+...+..++....+.....|.|.++++. +.+....+....+..++.++++++.+++.||++||
T Consensus 199 -------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~ 270 (393)
T PRK09705 199 -------VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI-GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR 270 (393)
T ss_pred -------cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 1122344455555555666667778888999999885 45667777788899999999999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccC-CchhhhhhhHHHHH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIF-PTKFRAQGSSLAIS 465 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~ 465 (541)
+....+..+..++..++...... ... ... ...++......|.......+.. |++.+++..|+.+.
T Consensus 271 ~~~~~~~~l~~~~~~~~~~~~~~--------~~~----~~~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 336 (393)
T PRK09705 271 KLLMLALVLQLVGFCGFIWLPLQ--------LPV----LWA--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQG 336 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHccch--------HHH----HHH--HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 98888877766665544321110 011 111 1122223333344444445555 46789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009185 466 VNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKGKS 516 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (541)
..++++.++|.+.|.+.|..| +...+.+.++++++..++.+.+.+|++.+.
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 999999999999999999987 566677777777766666666777766543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=299.25 Aligned_cols=366 Identities=17% Similarity=0.209 Sum_probs=269.0
Q ss_pred HHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 009185 72 AILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL 151 (541)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 151 (541)
...+.++++.++++.....+..|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 46667777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHH
Q 009185 152 MGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG 231 (541)
Q Consensus 152 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~ 231 (541)
++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+. +..+||+.|+
T Consensus 100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~---~~~~w~~~f~ 176 (426)
T PRK12307 100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA---EAYGWRAAFF 176 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc---ccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887 7789999998
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcC-CcchhHHhh
Q 009185 232 LAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQ-GQGVWKELL 310 (541)
Q Consensus 232 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 310 (541)
+..+..++........||++++...+.+. ..+.. +..++ .+..+++.+
T Consensus 177 i~~~~~~~~~~~~~~~p~~~~~~~~~~~~----------~~~~~---------------------~~~~~~~~~~~~~~~ 225 (426)
T PRK12307 177 VGLLPVLLVIYIRARAPESKEWEEAKLSG----------KGKHS---------------------QSAWSVFSLSMKGLF 225 (426)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHhhhhc----------ccccc---------------------ccchhhhhHHHHHHH
Confidence 86554444333333456665432111000 00000 00000 001222332
Q ss_pred cCCCchhHHHHHHH---HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 009185 311 LRPSRPLRRILIAA---IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRP 387 (541)
Q Consensus 311 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 387 (541)
+ ++.++. .....+......+.+..+.|.|+++.+. +....+.......++.++++++.|++.||++||+
T Consensus 226 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 226 N-------RAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred h-------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 2 222221 1222222333444466788999888654 5555666778888999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHH
Q 009185 388 LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVN 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 467 (541)
.+..+.++..+..+.+...... .+. ......+..++...+..+....++.|.+|++.|++++|+.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 366 (426)
T PRK12307 298 TFSIGLLMSFLFIFPLFRIPQD--------NYL---LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLA 366 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHccc--------cHH---HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHH
Confidence 8887776665554433321110 011 11111222222222333444567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhH
Q 009185 468 RLVSGIVAMSFLSISRAVTFGGM 490 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~~~~ 490 (541)
++++.++|.+.|.+.+..|+...
T Consensus 367 ~~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 367 ATSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred hHHHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999998886543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=297.05 Aligned_cols=388 Identities=16% Similarity=0.159 Sum_probs=265.7
Q ss_pred HHHHHHHhhhhhhcccchhhhhHHH-Hhhhc--CCChhHHHHHH-----HHHHHHHHHHHhhhhhhhccchhHHHHHHHH
Q 009185 71 GAILASTNSILLGYDIGVMSGAILY-IRDNL--NITSIQVEVLV-----GSLNVCSLIGSLAAGKTSDCIGRRYTIVLAA 142 (541)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~ 142 (541)
......++.+.+++|...++.+.|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+.
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 3456667889999999999988874 56666 67765 45554 3455667899999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHH--------HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH
Q 009185 143 ATFLLGALLMGLAPSFL--------FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN 214 (541)
Q Consensus 143 ~~~~i~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 214 (541)
++++++++++++++|++ .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 102 WMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 5888999999999999999999999999999999999999999999999987776
Q ss_pred hhhcCCC-----CcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 009185 215 YALSGLP-----EHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA 289 (541)
Q Consensus 215 ~~l~~~~-----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (541)
..+.... ..+|||++|++.+++.++........||+|++...+++.++.+
T Consensus 182 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~------------------------- 236 (438)
T PRK09952 182 SLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK------------------------- 236 (438)
T ss_pred HHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc-------------------------
Confidence 6554210 2579999999988776665555556888876532221100000
Q ss_pred hhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHH-HHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHH
Q 009185 290 DLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAI-GVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIA 368 (541)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (541)
++.++.+. ..+++..+.. ....++.....+....|.|.|+++..+.+...........++.
T Consensus 237 ------------~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~ 298 (438)
T PRK09952 237 ------------KRIPVIEA------LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGL 298 (438)
T ss_pred ------------ccCCHHHH------HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00001110 1112222222 2233444555666778889888765554544443345556777
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeec
Q 009185 369 KTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSS 448 (541)
Q Consensus 369 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (541)
.+++.++.|+++||+|||+.+..+.++..++...+....... ...+ .++...+..++......+..+++..
T Consensus 299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (438)
T PRK09952 299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ-----SIFW----IVFFSIMLANIAHDMVVCVQQPMFT 369 (438)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC-----ChHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999988877665554443332221110 0011 1111112222222222345567889
Q ss_pred ccCCchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 449 EIFPTKFRAQGSSLAISVNR-LVSGIVAMSFLSISRAV--TFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 449 ~~~p~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
|.+|++.|+++.|+.+.... +++.++|.+.+.+.+.. +|...+.+.+++.+++.+.. +..+++
T Consensus 370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 99999999999999776655 78999999999998854 35566666666666665554 344543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=304.35 Aligned_cols=416 Identities=16% Similarity=0.165 Sum_probs=285.7
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
+..+..+..++++.+++.++....++.+|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 44445556777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 146 LLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
+++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+. +..+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~ 172 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWG 172 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 7889
Q ss_pred hHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcch
Q 009185 226 WRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGV 305 (541)
Q Consensus 226 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (541)
||+.|++..+..++.++....+||++++...+++.++.++..+.....+............. ......... .....
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~ 248 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA-AALWFCFAG---NLQNA 248 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHh---hhcch
Confidence 99999886555555544555678876543322211111111110000000000000000000 000000000 00000
Q ss_pred hHH-------------hhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 009185 306 WKE-------------LLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSF 372 (541)
Q Consensus 306 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (541)
+.. .... ....+.+.........+...........++|.|+++..+.+....+.+.....++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g 327 (496)
T PRK03893 249 AIVAVLGLLCAAIFISFMVQ-SSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVG 327 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0000 00011222222222222222233346678899997555566777777888999999999
Q ss_pred HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 373 VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 373 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.++.|++.||++||+.+.++..+..+..+++..... ...+ ......+..++...+..+....++.|.+|
T Consensus 328 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (496)
T PRK03893 328 CCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG-------ANVW----VLGLLLFFQQMLGQGISGLLPKLIGGYFD 396 (496)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-------cHHH----HHHHHHHHHHHHhcccchhhHHHHHhhCC
Confidence 999999999999999887776555544433322110 0011 11122222222333334555667889999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAV 500 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 500 (541)
++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus 397 ~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 397 TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777665544433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=301.92 Aligned_cols=394 Identities=13% Similarity=0.037 Sum_probs=285.4
Q ss_pred HHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Q 009185 69 LTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLG 148 (541)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 148 (541)
+..+..++++.++..+|.++++..+|.+.+|+|.+.++.+|+.+.|.++++++++++|+++||+|||++++.+.++++++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcC-ccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhH
Q 009185 149 ALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEIS-PAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWR 227 (541)
Q Consensus 149 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr 227 (541)
++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++. ++.|||
T Consensus 85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~---~~~gwr 161 (495)
T PRK14995 85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL---EHFYWG 161 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCChH
Confidence 999999999999999999999999998888888887776 6789999999999999999999999999999 788999
Q ss_pred HHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHH------------HHhcCChhhHHHHHHHHHHHHHhh-hh
Q 009185 228 LMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQAL------------IKTSDSVEEAEFRLNEMTRTIADL-GH 293 (541)
Q Consensus 228 ~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~ 293 (541)
|.|++...++++.++ ..+++||++... +++.+...... ........................ ..
T Consensus 162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 239 (495)
T PRK14995 162 SVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLF 239 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence 999997766665544 445577765311 11111100000 000000000000000000000000 00
Q ss_pred hhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 009185 294 AASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFV 373 (541)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (541)
...+ .+.+. ...+.+.++++.+....+..++..........+.|.|++...+.++..++....+..++..++.
T Consensus 240 ~~~e--~~~~~-----p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 240 IRTQ--LAASR-----PMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHH--hcCCC-----CCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 1111234556666666666666667777788899999999888888999989999999999999
Q ss_pred HHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc
Q 009185 374 LISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT 453 (541)
Q Consensus 374 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 453 (541)
++.|++.||+|+|+.+..+..+.+++..++...... ...+... ...+..++......+.....+.+..|+
T Consensus 313 ~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~------~~~~~~~----~~~~l~G~g~g~~~~~~~~~~~~~~~~ 382 (495)
T PRK14995 313 PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFS------TQQWQAW----GLMALLGFSAASALLASTSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCC------CchHHHH----HHHHHHHHhHHHHHHHHHHHHHhcCCH
Confidence 999999999999998888877777766655442211 1112211 122222333223334445566778899
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 454 KFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 454 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
+.++.+.++.++..++|+.+|+.+.+.+.++
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=300.19 Aligned_cols=401 Identities=14% Similarity=0.098 Sum_probs=276.1
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
++.+.++..+++.......++..++...|.+.++ |++..+.+++.+.+.++++++++++|+++||+|||++++.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 3334444545555666666777778888999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc----cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHH-HHHHHHHhhhcCC
Q 009185 146 LLGALLMGLAP----SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGI-LLGYISNYALSGL 220 (541)
Q Consensus 146 ~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~ 220 (541)
+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|+++++++..+.++|. +.+|+++..+.
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~-- 181 (452)
T PRK11273 104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA-- 181 (452)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--
Confidence 99999988763 788999999999999998888888899999999999999999999999886 45666544443
Q ss_pred CCcchhHHHHHhhhHHHHHH-HHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCC
Q 009185 221 PEHINWRLMLGLAALPAIAV-AFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNN 299 (541)
Q Consensus 221 ~~~~gwr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (541)
...+||+.|++.+++.++. ++..+++||+|+....++ .++.++. ..+ ..+. .
T Consensus 182 -~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~---------------------~~~~-~ 234 (452)
T PRK11273 182 -WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKND---YPD---------------------DYNE-K 234 (452)
T ss_pred -HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhhc---ccc---------------------cccc-c
Confidence 2349999999977766654 445566788875321111 0000000 000 0000 0
Q ss_pred cCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 300 WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALY 379 (541)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 379 (541)
..++.+.++.+. ...++++.+|...+..++.....+....|.|.|+++..+.+....+....+..++.+++.++.|++
T Consensus 235 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l 312 (452)
T PRK11273 235 HEQELTAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 312 (452)
T ss_pred cCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111222211 023456778877777777777777888899999998766566666667778889999999999999
Q ss_pred Hhhc--CCchHHH-HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhh
Q 009185 380 LDHF--GRRPLLM-LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFR 456 (541)
Q Consensus 380 ~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 456 (541)
+||+ +||.... ....+..++..++.+... ...+.. ....+..+....+.......+..|.+|++.|
T Consensus 313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 381 (452)
T PRK11273 313 SDKVFRGNRGATGVFFMTLVTIATIVYWLNPA-------GNPTVD----MACMIVIGFLIYGPVMLIGLHALELAPKKAA 381 (452)
T ss_pred HHHHccCCcchHHHHHHHHHHHHHHHHHHhcc-------cChHHH----HHHHHHHHHHHHhHHHHHHHHHHHHcChhhh
Confidence 9999 4444322 222222222222211110 001111 1111112222111112223456789999999
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 457 AQGSSLAISVNRLVSGI-VAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 457 ~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
|+++|+.+...++++.+ +|.+.|.+.|..||+..|++++++++++.+....+.
T Consensus 382 g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 382 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998765 799999999999999999988888777766654443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=292.80 Aligned_cols=360 Identities=18% Similarity=0.212 Sum_probs=247.1
Q ss_pred HHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHH-HHH-----HHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 72 AILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLV-GSL-----NVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
...++++.+++++|+..+++..|.+.+|++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.+.+++
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4667778899999999999999999999999887765443 332 2223478999999999999999999999999
Q ss_pred HHHHHHHHhcccHHH--------HHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhh
Q 009185 146 LLGALLMGLAPSFLF--------LMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+
T Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 97 ASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 688999999999999999999999999999999999999998888888888877776
Q ss_pred cCC-----CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 009185 218 SGL-----PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLG 292 (541)
Q Consensus 218 ~~~-----~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (541)
... .+.+|||++|++.++..++..+.....||++++...+++ .
T Consensus 177 ~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------------~------------------- 224 (434)
T PRK15075 177 NQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------------P------------------- 224 (434)
T ss_pred HHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------------c-------------------
Confidence 321 146799999988554433333233334443221100000 0
Q ss_pred hhhccCCcCCcchhHHhhcCCCchhHHHHHH-HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 009185 293 HAASSNNWQGQGVWKELLLRPSRPLRRILIA-AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTS 371 (541)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (541)
+.+..++. ..+++..+ ...+..+.....++.+..|.|.|+++..+.+....+....+..++.++
T Consensus 225 --------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~ 289 (434)
T PRK15075 225 --------SMREIFRS-------LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFI 289 (434)
T ss_pred --------ccccHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000111 11122222 222333344556677888999999876555666667677788899999
Q ss_pred HHHHHHHHHhhcCCchHHHHhHHHHHHHHHH-HHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeeccc
Q 009185 372 FVLISALYLDHFGRRPLLMLGSTGMAVSLAV-LGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEI 450 (541)
Q Consensus 372 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (541)
+.++.|+++||+|||+.+..+..+..+.... +..... . ..........+...+..+ ...+....+..|.
T Consensus 290 ~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~e~ 359 (434)
T PRK15075 290 WLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--A----PSFARMLAVELWLSFLYG----SYNGAMVVALTEV 359 (434)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--C----CchHHHHHHHHHHHHHHH----HHHhhHHHHHHHH
Confidence 9999999999999999877655443322211 111111 0 001111111111111212 2223344677899
Q ss_pred CCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhcch
Q 009185 451 FPTKFRAQGSSLAISVNRL-VSGIVAMSFLSISRAVTFG 488 (541)
Q Consensus 451 ~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 488 (541)
+|++.|+++.|+.+..... ++.++|.+.+.+.+..|+.
T Consensus 360 ~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 360 MPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred CCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9999999999997666665 5888999999999988853
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=278.02 Aligned_cols=441 Identities=21% Similarity=0.269 Sum_probs=327.0
Q ss_pred CCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcC--------CChhHHHHHHHHHHHHHHHHHhhhhhhhccch
Q 009185 62 PRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLN--------ITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG 133 (541)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 133 (541)
....++....+.+...+.+.+.||...++.+.|.+...|. .++.-.+.+..+..+|..+||+++|+++||+|
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445666777788899999999999999999997766552 44566788999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHH
Q 009185 134 RRYTIVLAAATFLLGALLMGLAP-------SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFG 206 (541)
Q Consensus 134 rr~~~~~~~~~~~i~~~~~~~a~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 206 (541)
||+++...++++.+++++++++. -.+++...|++.|+|.|+-+|...++.+|...+++||...+.+.+..+.|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 99999999999999999888763 25778889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHhhhcC----CCCc--------chhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcC-ChHHHHHHHHHhcCC
Q 009185 207 ILLGYISNYALSG----LPEH--------INWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKG-RFADAKQALIKTSDS 273 (541)
Q Consensus 207 ~~~g~~~~~~l~~----~~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~~~~~ 273 (541)
.+.|.+++-.+.. ..+. .=||..|.+.++++++.+...+.+||++++-.... +.+.+.+..++....
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~ 272 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV 272 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc
Confidence 7777666655532 1111 23999999999999999888999999998763322 222222211111111
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCC
Q 009185 274 VEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGIN 353 (541)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (541)
.-+ .+.......+.++.+..++......+.-+.+...+..+|..-.+++....+...+++..+..
T Consensus 273 ~~~---------------~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~ 337 (538)
T KOG0252|consen 273 DIE---------------AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVI 337 (538)
T ss_pred ccc---------------hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccC
Confidence 000 00000111111111111111100112335666777888888889999999999999877665
Q ss_pred CchhhH--------HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 009185 354 SKKQLV--------GVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCV 425 (541)
Q Consensus 354 ~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (541)
+..... ....+...+.++|..+..+++|++|||+..+.+++++++..+.++...+.. ......+
T Consensus 338 ~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~--------~~~~Gf~ 409 (538)
T KOG0252|consen 338 PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL--------ENTIGFV 409 (538)
T ss_pred CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc--------cccCcee
Confidence 443322 122233344445667777889999999999999999999888887654421 0111245
Q ss_pred HHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhHHHHHHHHHHH
Q 009185 426 IAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR-----AVTFGGMFFILSGITAV 500 (541)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~ 500 (541)
+...+...+.+.+.+..+..+.+|.+|.+.|++..|+..+.+..|++++...+..+.+ ..+.+.++++++++.++
T Consensus 410 v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~ 489 (538)
T KOG0252|consen 410 VLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL 489 (538)
T ss_pred ehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH
Confidence 5666667778888888899999999999999999999999999999999999999999 78888999999999888
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHhcc
Q 009185 501 GTVFFYFFLPETKGKSLEDIGLLFED 526 (541)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (541)
+.++. +++||+++++++|.+++.+.
T Consensus 490 gi~~T-~l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 490 GILFT-LLIPETKGKSLEEISNEEES 514 (538)
T ss_pred hHhee-EEeecccccCHHHhcChhhc
Confidence 88776 56779999999998665443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=296.14 Aligned_cols=391 Identities=15% Similarity=0.162 Sum_probs=286.1
Q ss_pred hhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccH
Q 009185 79 SILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF 158 (541)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~ 158 (541)
++...+++..++...|.+.+++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
+.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+. +..+||+.|++.+++.+
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~ 159 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL---IHFSWQWAFIIEGVLGI 159 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH---HhCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887 77899999999777766
Q ss_pred HHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchh
Q 009185 239 AVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPL 317 (541)
Q Consensus 239 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (541)
+..+. .++.||+|+.. +...++.++...+. .. .+.+..++....+...+ +.+
T Consensus 160 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~~-------~~~ 212 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQKA--KWLTEEEKYIVVGG-------------LL-----AEQQGKGPSTPKKYQIK-------ELL 212 (399)
T ss_pred HHHHHhhheecCCCCcc--ccCCHHHHhhcchh-------------hc-----cccccccccCCCccchH-------HHh
Confidence 65554 44466654310 00001000000000 00 00000000011111122 234
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH-HhHHHH
Q 009185 318 RRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM-LGSTGM 396 (541)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~ 396 (541)
+++.++...+..++..........+.|.++++..+.+....+.......++.+++.++.|++.||++||+... ......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (399)
T TIGR00893 213 KDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTA 292 (399)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 4566777777777788888888899999998877777777777888889999999999999999999986211 111111
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
.++.+........... .... .........+.+..+..+...++..|.+|++.|+++.|+.+...++++.++|.
T Consensus 293 ~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 293 IIAGLVLSLLMFATNY--VNIP-----YAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHhcc--chhH-----HHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 1111111111110000 0001 11112222223333356778889999999999999999999999999999999
Q ss_pred HHHHHHHhhc-chhHHHHHHHHHHHHHHHHH
Q 009185 477 SFLSISRAVT-FGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 477 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 506 (541)
+.|.+.+..| +...+.+.+++.+++.+..+
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999888 88888888777777666543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=286.85 Aligned_cols=369 Identities=13% Similarity=0.087 Sum_probs=277.2
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
..++++.+..+.+....++.+|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~ 89 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
++++|++.+++.|+++|++.+...+....++.|++|+++|+++++......++|..++|.+.+.+.. +..|||+.|.+
T Consensus 90 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~gw~~~f~~ 167 (394)
T PRK03699 90 MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--RSIEWYWVYAC 167 (394)
T ss_pred HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988999999999988877651 35799999998
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 233 AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 233 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
.+++.++..+..++ .+.|+. +++.+ +++ .. . .+
T Consensus 168 ~~~~~~~~~~~~~~-~~~p~~---~~~~~---------~~~--------------------------~~---~----~~- 200 (394)
T PRK03699 168 IGLVYVAIFILTLF-SEFPAL---GKHAP---------KAD--------------------------KP---V----AK- 200 (394)
T ss_pred HHHHHHHHHHHHHh-cCCccc---cccCc---------ccc--------------------------Cc---c----cc-
Confidence 77776655444332 222210 00000 000 00 0 00
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
...++.++...+..++.....+.+..|.|.|+++..+.+....+.......++..+++++.+++.||+++|+.+...
T Consensus 201 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~ 277 (394)
T PRK03699 201 ---EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL 277 (394)
T ss_pred ---ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 01123345555555666666778889999999877666777777788888899999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHH
Q 009185 393 STGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSG 472 (541)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 472 (541)
..+..+.+.++..... .+ ......+..+++..+..+...++..|..|.+ ++...|......++|..
T Consensus 278 ~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~ 343 (394)
T PRK03699 278 AGLALVLMYLFVNTDD---------PS----HLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTM 343 (394)
T ss_pred HHHHHHHHHHHHHcCC---------ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHH
Confidence 6655554444432111 01 1112223333333334455555566665543 67788899999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 473 IVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 473 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
++|.+.|.+.+..|++..+++.+++.+++.+.+..
T Consensus 344 i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 344 LTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999988888888777776655433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=290.63 Aligned_cols=377 Identities=15% Similarity=0.083 Sum_probs=249.8
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL 154 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 154 (541)
.+...+...++.....+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 120 (476)
T PLN00028 41 SWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL 120 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC------CCCcchhHH
Q 009185 155 APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG------LPEHINWRL 228 (541)
Q Consensus 155 a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~~~gwr~ 228 (541)
+++++.++++|+++|++.+.. .....++.|++|+++|++++++......+|..+++.+.+.+.. ..+..|||+
T Consensus 121 ~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~ 199 (476)
T PLN00028 121 VSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRI 199 (476)
T ss_pred hcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Confidence 999999999999999998865 4456788999999999999999987777777777655544421 012358999
Q ss_pred HHHhhhHHHHHHHHHHhcCCC-ChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhH
Q 009185 229 MLGLAALPAIAVAFGVIAMPE-SPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWK 307 (541)
Q Consensus 229 ~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (541)
.|++.+++.++..+..+++++ .|+ ++.++.+ +..+. ++..+.
T Consensus 200 ~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~----~~~~~----------------------------~~~~~~ 242 (476)
T PLN00028 200 AFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK----KSGTM----------------------------PKDSFS 242 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH----hcCcc----------------------------ccccHH
Confidence 999988877766555544443 331 1100000 00000 000000
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 009185 308 ELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRP 387 (541)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 387 (541)
..++ ..++++.+|.+.+.++........+..+.|.|+.+..+.+...++.+..+..++.+++++++|+++||++||+
T Consensus 243 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~ 319 (476)
T PLN00028 243 KVLR---YGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF 319 (476)
T ss_pred HHHH---HHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 1111 1233445555555555555555667778899987766667777777888899999999999999999998652
Q ss_pred -------HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhh
Q 009185 388 -------LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGS 460 (541)
Q Consensus 388 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 460 (541)
...+...+.++.++++.... ..+... ...+..+++.....+..+.+..+.. ++.+|++.
T Consensus 320 ~~~~r~~~~~~~~~l~~i~~~~~~~~~---------~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 385 (476)
T PLN00028 320 GMRGRLWALWIVQTLGGVFCIWLGRAN---------SLGAAI----VVMILFSIFVQAACGATFGIVPFVS-RRSLGVIS 385 (476)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcccc---------hHHHHH----HHHHHHHHHHHHhhhhhcccCcccC-hhhchhhh
Confidence 11122222222122111110 011111 1111111211112233445556664 46799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 461 SLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 461 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
|+.+..+++|+.+++.+.+ ..+..+|...|++.+++.+++.++.++
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 9998888787777776654 112345778888888777777666533
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=289.03 Aligned_cols=356 Identities=16% Similarity=0.057 Sum_probs=264.9
Q ss_pred cchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 009185 86 IGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGR 165 (541)
Q Consensus 86 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r 165 (541)
....++..|.+.+++|++.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH-
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV- 244 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~- 244 (541)
++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++.+.+.+. +..|||+.|++.+++.++..+..
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI---NLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888999997 57999999999999999887666666665 56799999999887777665544
Q ss_pred hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHH
Q 009185 245 IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAA 324 (541)
Q Consensus 245 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
++++|+|+.. .+++ + +.++ ++...++ .++++.++.
T Consensus 175 ~~~~~~~~~~-~~~~-~-----------~~~~-------------------------~~~~~~~-------~~~~~~~~~ 209 (377)
T TIGR00890 175 FLIGYPPGQL-IKTN-I-----------EVSV-------------------------KDYTVWE-------MLRTPQFWV 209 (377)
T ss_pred HheecCchhc-cccC-c-----------ccch-------------------------hhhhHHH-------HHcCccHHH
Confidence 4455443210 0000 0 0000 0000111 122333444
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLG 404 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 404 (541)
..+..+...........+.+.+.++.+ .+....+.......++.++++++.|++.||++||+.+.++..+.+++.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 288 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQSLG-LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML 288 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 444444444444445555666766655 3455566678888999999999999999999999998888877777766654
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 405 LGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
+.... ..+ ......+..+.......+....+..|.+|+++|+++.|+.+...++|+.++|.+.|.+.+.
T Consensus 289 ~~~~~-------~~~----~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 289 FIPML-------NDV----LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred Hcccc-------hhH----HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 42211 001 1111222223333333445556788999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHH
Q 009185 485 VTFGGMFFILSGITAVGT 502 (541)
Q Consensus 485 ~g~~~~~~~~~~~~~~~~ 502 (541)
.||...+.+.+++.+++.
T Consensus 358 ~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 358 IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hchhhHHHHHHHHHHHhc
Confidence 999888888777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=283.46 Aligned_cols=359 Identities=16% Similarity=0.164 Sum_probs=261.5
Q ss_pred HHHhhhhhhcccchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
+.+..++..++..+..+.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++++++++++.
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 334445666677778888885 7889999999999999999999999999999999999999999999999988877665
Q ss_pred hcc--------cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 154 LAP--------SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 154 ~a~--------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
++. +++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+. +..|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g 176 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY---HWGG 176 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH---Hccc
Confidence 542 57789999999999999999999999999999999999999999999999999999999988 7889
Q ss_pred hHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcch
Q 009185 226 WRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGV 305 (541)
Q Consensus 226 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (541)
||+.+++.++..++..+.....|++++ +++ + +. +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~--~~---------------------------------------~ 210 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAVPP----VKG-E--RL---------------------------------------P 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc-c--ch---------------------------------------h
Confidence 999988766655544433332333221 000 0 00 0
Q ss_pred hHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009185 306 WKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGR 385 (541)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 385 (541)
+++.++ +.++. .....+....+.....+.|.|+.+.+. + ..+.......++.+++.++.|++.||+++
T Consensus 211 ~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 278 (399)
T PRK05122 211 FRRVLG---RVWPY------GMGLALASIGFGTIATFITLYYAARGW-D--GAALALTLFGVAFVGARLLFGNLINRLGG 278 (399)
T ss_pred HHHHHH---HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccc-c--cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000000 00111 111112223344555677777766544 2 23335567788889999999999999999
Q ss_pred chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHH
Q 009185 386 RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 465 (541)
|+.+..+..+.+++..++..... .+. .....++.+++.....+.......|..|++.|+++.|+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (399)
T PRK05122 279 LRVAIVSLLVEILGLLLLWLAPS---------PWM----ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV 345 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------HHH----HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99888887777777665544221 111 12222233333333334444556788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
..++|..+++.+.|.+.+..|++..+++.+++.+++.++.+.
T Consensus 346 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 346 FLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998988888877777666544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=342.65 Aligned_cols=432 Identities=33% Similarity=0.631 Sum_probs=326.3
Q ss_pred HHHhhhhhhcccchhhhhHHHHh--hhcCCC---------hhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAILYIR--DNLNIT---------SIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAA 143 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 143 (541)
+.++.+.++++....+...+... .++..+ ..+.+++.+...+|..+|++++|.++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34555788888888877776444 222222 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC
Q 009185 144 TFLLGALLMGLAP---SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL 220 (541)
Q Consensus 144 ~~~i~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 220 (541)
+..+++++.++++ |++.++++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|..++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887766532
Q ss_pred CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCc
Q 009185 221 PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNW 300 (541)
Q Consensus 221 ~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (541)
.+..+||+.+++.++++++..+..+++||||+|+..++|.+++++.+++.++.+..+++.. +.. .+.+ +..
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~-------~~~~-~~~ 235 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIE-EIK-------AEKK-ESQ 235 (451)
T ss_pred cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccc-ccc-------cccc-ccc
Confidence 2345699999999999988888888999999999999999999988877544321111110 000 0000 001
Q ss_pred CCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009185 301 QGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYL 380 (541)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 380 (541)
+.+..++++++.+. .+++.+..+.+..+....+.....+|.+.++++.+..+. ........+...++.+++.++.
T Consensus 236 ~~~~~~~~l~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 310 (451)
T PF00083_consen 236 ESKASWRDLFRNKK--YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLI 310 (451)
T ss_pred ccceeeeecccccc--ccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence 11134555555322 344555555555555566666777788888877766555 2234455567777888888999
Q ss_pred hhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhh
Q 009185 381 DHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGS 460 (541)
Q Consensus 381 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 460 (541)
||+|||+.++.+..+++++.+.++........ ...+.....+.........+..+..+..+.+..|.+|++.|+++.
T Consensus 311 ~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~ 387 (451)
T PF00083_consen 311 DRFGRRKLLIIGLLLMAICSLILGIIFFLGVS---SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI 387 (451)
T ss_pred cccccccccccccccccccccccccccccccc---cccccccccceeeeecccccccccccccccccccccccccccccc
Confidence 99999999999988888877777511111110 001111223333344445566677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 009185 461 SLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLL 523 (541)
Q Consensus 461 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (541)
|+....+++++++++.+...+.+..+....+.+.++++++..++.++++||+|+++++|+++.
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 999999999999999999888888775677888888888888888899999999999999864
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=294.26 Aligned_cols=388 Identities=10% Similarity=0.004 Sum_probs=270.5
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
..+.+...........++..+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 101 (455)
T TIGR00892 22 GATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA 101 (455)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH
Confidence 44444444444455667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHH-HHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHH
Q 009185 153 GLAPSFLFLMA-GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG 231 (541)
Q Consensus 153 ~~a~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~ 231 (541)
+++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++...+..+|..++|.+++.+. +.+|||+.|+
T Consensus 102 ~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~---~~~gwr~~f~ 177 (455)
T TIGR00892 102 SFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF---ESFGWRGSFL 177 (455)
T ss_pred HHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH---HHhChHHHHH
Confidence 99999998875 4799999999877788888899996 78999999999999999999999999988 7789999999
Q ss_pred hhhHHHHHHHHHHhcC-CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 232 LAALPAIAVAFGVIAM-PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
+.+++.++..+..+++ ++.+.. ...+.++ . ..........+ ...+......++..
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 233 (455)
T TIGR00892 178 ILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---EGLPPDGSTKK------------------LSKKSTAEKINRFL 233 (455)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---ccCCCCCcccc------------------ccccchhhhhhhhc
Confidence 9877766554444333 322110 0000000 0 00000000000 00000000001100
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc--CCchH
Q 009185 311 LRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF--GRRPL 388 (541)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 388 (541)
+.+.++++.++......++..........++|.|+++. +.+....+...++.+++.++++++.|++.||. ++|+.
T Consensus 234 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 310 (455)
T TIGR00892 234 --DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK-GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ 310 (455)
T ss_pred --chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHH
Confidence 01245566677776766666677777778889998876 44667777788889999999999999999974 33333
Q ss_pred HHHhHHHH--HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH
Q 009185 389 LMLGSTGM--AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV 466 (541)
Q Consensus 389 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 466 (541)
..++.... +++.+++..... .+ .+++..+..++......+...+++.|.+|++.+++++|+.+..
T Consensus 311 ~~~~~~~~~~~l~~ll~~~~~~---------~~----~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 377 (455)
T TIGR00892 311 YLFSFALLFNGLTHLLCALAGD---------YT----GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIV 377 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhch---------HH----HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHH
Confidence 33322222 222222222111 11 2222333344444444566677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q 009185 467 NRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVF 504 (541)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 504 (541)
.++|++++|.+.|.+.+..+ |...|++.+++.+++.+.
T Consensus 378 ~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 378 ECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999998874 778888877766665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=278.87 Aligned_cols=369 Identities=14% Similarity=0.088 Sum_probs=266.4
Q ss_pred HHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 74 LASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
.+.++.+..++......+.+|.+++|+|.+.++.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhh
Q 009185 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA 233 (541)
Q Consensus 154 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~ 233 (541)
+++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+. +..+||+.|++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~gwr~~f~~~ 163 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS---QEFSWRYTFLLI 163 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---hhccHHHHHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999988 778999999997
Q ss_pred hHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 234 ALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 234 ~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
++..++..+ ..+++||.++ +.+.+ .+ . .+
T Consensus 164 ~~~~~~~~~~~~~~lp~~~~----~~~~~-~~--------------~-------------------------~~------ 193 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIRD----EAKGG-LR--------------E-------------------------QF------ 193 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCc----ccccC-HH--------------H-------------------------HH------
Confidence 776665544 4455777532 00000 00 0 00
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
+.++++..+......++..........+.+.++.+..+.+....+.......++.++++++.+++.||+++|+.+..+
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~ 271 (382)
T PRK10091 194 --HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVT 271 (382)
T ss_pred --HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHH
Confidence 012222333333333333333344445666677665566777777788899999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHH
Q 009185 393 STGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSG 472 (541)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 472 (541)
..+.+++.+++...... .+... +.......+.+. ...+.......+..|.+.++.+ ..+...++|.+
T Consensus 272 ~~~~~i~~~~~~~~~~~--------~~~~~--~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~ 338 (382)
T PRK10091 272 DFIIVLALLMLFFFGGM--------KTASL--IFAFICCAGLFA-LSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSA 338 (382)
T ss_pred HHHHHHHHHHHHHHHhh--------HHHHH--HHHHHHHHHHHh-hhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHH
Confidence 77777766554332111 11111 111111111111 1112222333444455545444 44677889999
Q ss_pred HHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 473 IVAMSFLSISRA-VTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 473 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
++|.+.|.+.|. .+|...+.+.++++++.......+.+
T Consensus 339 ~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 339 IGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999985 57888888877666665555444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=274.22 Aligned_cols=377 Identities=11% Similarity=0.037 Sum_probs=274.8
Q ss_pred HHHHHHhhhhhhcccchhhhhHHHHhh-hcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 009185 72 AILASTNSILLGYDIGVMSGAILYIRD-NLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL 150 (541)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 150 (541)
+.+..++.++........+++.+.+.+ ++|+|++|.+++.+++.++++++.++.|++.||+|.|+++.++.+++++.++
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~ 115 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV 115 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 344555556666678889999998876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-----ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC------
Q 009185 151 LMGLA-----PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG------ 219 (541)
Q Consensus 151 ~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------ 219 (541)
+.+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+..
T Consensus 116 ~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~ 194 (462)
T PRK15034 116 WLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAF 194 (462)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99987 8999999999999998 77889999999999999999999999977777777666555543220
Q ss_pred ---------CCCcchhHHHHHhhhHHHHHHHHHHhc-CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 009185 220 ---------LPEHINWRLMLGLAALPAIAVAFGVIA-MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIA 289 (541)
Q Consensus 220 ---------~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (541)
..+..+||..+++.+++.++..+..++ .++.|. .+.
T Consensus 195 ~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~------------------------------- 240 (462)
T PRK15034 195 LGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRA------------------------------- 240 (462)
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ccc-------------------------------
Confidence 012456999888877777666655444 333321 000
Q ss_pred hhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHH
Q 009185 290 DLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAK 369 (541)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (541)
..++. ...+|+|..|.+++.+++.+..+.++.+++|.|+++... .........+..+..
T Consensus 241 ---------------~~~~~----~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~ 299 (462)
T PRK15034 241 ---------------SIADQ----LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIG 299 (462)
T ss_pred ---------------CHHHH----HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHH
Confidence 00111 124567778888999999999999999999999887542 222232344557888
Q ss_pred HHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecc
Q 009185 370 TSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSE 449 (541)
Q Consensus 370 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (541)
.+.++++|+++||+|+++++.++.+.+.++...+...... ....+.+.....++.+++..+..+ ..++-++.+
T Consensus 300 ~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~---~~~~~~~~~~~~~~~l~~~~G~gn----gsvfk~ip~ 372 (462)
T PRK15034 300 AIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG---TGSGNFIAFYAVFMGLFLTAGLGS----GSTFQMIAV 372 (462)
T ss_pred HHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHhcccc----hHHHHhhHH
Confidence 8999999999999999999988887776665443222210 000111111111111222222222 344556666
Q ss_pred cCCc---------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHh
Q 009185 450 IFPT---------------------KFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 450 ~~p~---------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 507 (541)
.+|+ ++.|.+.|+....+.+|+++.|.+.|...+..| +...++.+.+..+++.++.|.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6664 157889999999999999999999999888766 666788888888888888776
Q ss_pred hccc
Q 009185 508 FLPE 511 (541)
Q Consensus 508 ~~~~ 511 (541)
+..+
T Consensus 453 ~y~r 456 (462)
T PRK15034 453 VYGR 456 (462)
T ss_pred Hhcc
Confidence 6543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=281.75 Aligned_cols=382 Identities=17% Similarity=0.031 Sum_probs=276.0
Q ss_pred cchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Q 009185 65 NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAAT 144 (541)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 144 (541)
++..++..+.+.+..+...++...+.+.+|.+.+++|.++.+.++..+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34555566777777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009185 145 FLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI 224 (541)
Q Consensus 145 ~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~ 224 (541)
.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......+|..++|.+++.+. ++.
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~ 164 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI---HVL 164 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hcc
Confidence 99999999999999999999999999999888899999999999999999999998888899999999999988 678
Q ss_pred hhHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCc
Q 009185 225 NWRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQ 303 (541)
Q Consensus 225 gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (541)
+||+.|++.++..++..+ ..+..||+++.. +.+... .+..
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------------~~~~------------------ 205 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPETAGRV----GEKLSL-----------------KELG------------------ 205 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCCccc----cccccH-----------------HHHH------------------
Confidence 999999987777666554 334567764310 000000 0000
Q ss_pred chhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 304 GVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF 383 (541)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 383 (541)
..++ ..++++.++...+..++..........+.|.++.+..+.++...+.......++.+++.++.+++.||+
T Consensus 206 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~ 278 (406)
T PRK15402 206 RDYK-------LVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR 278 (406)
T ss_pred HHHH-------HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011 123344455555554444444555566678887665555666666566667778899999999999999
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHH
Q 009185 384 GRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLA 463 (541)
Q Consensus 384 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 463 (541)
++|+.+.++..+..++..++........ ...+. .....+..+.......+......... +++.+|++.++.
T Consensus 279 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~----~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 349 (406)
T PRK15402 279 PLRSLIRMGLWPMVAGLLLAALATVISS----HAYLW----LTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAM 349 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccc----ccHHH----HHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHH
Confidence 9999988888777777776655432110 01111 11111222222222222222332222 447799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 464 ISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
+....++..+++.+.+.+.+..+.....+...+..++..++
T Consensus 350 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 390 (406)
T PRK15402 350 GMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLL 390 (406)
T ss_pred HHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888777544444433333333333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=275.47 Aligned_cols=354 Identities=19% Similarity=0.160 Sum_probs=256.1
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFL 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~ 159 (541)
+..........+.+|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 109 (394)
T PRK10213 30 ACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFS 109 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 33333444556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++.+. +.+|||+.|++.++++++
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~---~~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG---ELIGWRNVFNAAAVMGVL 186 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 778999999997766665
Q ss_pred HHHHH-hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 240 VAFGV-IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 240 ~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
..+.. ..+||+|+. + ++.. ...+ +.++
T Consensus 187 ~~l~~~~~~p~~~~~-----~-~~~~---------------------------------------~~~~-------~~l~ 214 (394)
T PRK10213 187 CIFWIIKSLPSLPGE-----P-SHQK---------------------------------------QNTF-------RLLQ 214 (394)
T ss_pred HHHHHHHHCCCCCcc-----c-ccch---------------------------------------hHHH-------HHhc
Confidence 44433 346665320 0 0000 0000 1234
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhcc-HHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYS-PEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMA 397 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 397 (541)
+|.++...+..+...........+. |.+.++.+ .+....+......+++.+++.++.+++.||.+ |+.++.+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~ 292 (394)
T PRK10213 215 RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAG-FGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLA 292 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 4555554444444444444555555 66666554 45566676788888999999999999999954 444443333333
Q ss_pred HH-HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 398 VS-LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 398 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+. +.+...... .+ .+....+..++......+...+++.+..|+ .++.+.+......++|..+|+.
T Consensus 293 ~~~~~l~~~~~~---------~~----~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~ 358 (394)
T PRK10213 293 VSALVLTLWGSD---------KI----VATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAA 358 (394)
T ss_pred HHHHHHHHHhhh---------HH----HHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222222111 12 112222333333333445555566777774 4667778888888999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 477 SFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
+.|.+.|..|+...+...+.+.++..+.
T Consensus 359 l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 359 IGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 9999999988877777766655554444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=287.60 Aligned_cols=406 Identities=13% Similarity=0.059 Sum_probs=279.7
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 009185 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLL 147 (541)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 147 (541)
.+..+..+.+.+...+.++..+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3444455555666667777777788888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc
Q 009185 148 GALLMGLA----PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH 223 (541)
Q Consensus 148 ~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 223 (541)
+.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++.+.+..+|..+++.+.+.... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--~~ 181 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--WF 181 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH--Hh
Confidence 99888764 5678888999999999999999899999999999999999999999999999998877665431 34
Q ss_pred chhHHHHHhhhHHHHHHH-HHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCC
Q 009185 224 INWRLMLGLAALPAIAVA-FGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQG 302 (541)
Q Consensus 224 ~gwr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (541)
.+||+.|++.+++.++.. +..+++||+|+....++. ++. +++..... .+..+.+
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~--------------~~~~~~~--- 236 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEY-------RNDYPDDY--------------NEKAEQE--- 236 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhc-------cccccccc--------------ccccccc---
Confidence 699999999777766654 455667887653210000 000 00000000 0000000
Q ss_pred cchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 303 QGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382 (541)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 382 (541)
...++.... ..++++.++...+..++.....+.+..|.|.|+++..+.+....+....+..+.++++.++.|++.||
T Consensus 237 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr 313 (438)
T TIGR00712 237 -LTAKEIFMQ--YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 313 (438)
T ss_pred -cchHHHHHH--HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111110 13455666666666666666677888899999998766677777777888889999999999999999
Q ss_pred cCCchHHHHhHHHHHHHHH-HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhH
Q 009185 383 FGRRPLLMLGSTGMAVSLA-VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSS 461 (541)
Q Consensus 383 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 461 (541)
+++++....+.....+..+ ++.+... + . ...+.. ....+..++...+..........|.+|++.|++++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 384 (438)
T TIGR00712 314 VFKGNRGATGVFFMTLVTIAVIVYWMN--P-A--GNPLVD----MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 384 (438)
T ss_pred hccCcccHHHHHHHHHHHHHHHHHHhc--C-C--CchHHH----HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehh
Confidence 9654322223222222111 1111110 0 0 011111 111112222212211222234678899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 462 LAISVNRLVS-GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 462 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
+.+...++++ +++|.+.|.+.+..|+...+.+.+++.+++.+..+.+.+|.|
T Consensus 385 ~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 385 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999988875 689999999999999999998888888888877777777655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=285.71 Aligned_cols=379 Identities=15% Similarity=0.083 Sum_probs=281.0
Q ss_pred hhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh-----c
Q 009185 81 LLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL-----A 155 (541)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----a 155 (541)
+..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE 107 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence 33445566788899999999999999999999999999999999999999999999999998888877766542 5
Q ss_pred ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhH
Q 009185 156 PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235 (541)
Q Consensus 156 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~ 235 (541)
++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+. +..+||+.|++.++
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~---~~~~~~~~~~~~~~ 184 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI---AAGGVAWNYGLAAA 184 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH---HHHhhHHHHHHHHH
Confidence 688999999999999998888888999999999999999999999999999999999999988 67799999998777
Q ss_pred HHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCc
Q 009185 236 PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSR 315 (541)
Q Consensus 236 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (541)
..++..+..+.+||+++.. .+.++.. . +..+ .++.
T Consensus 185 ~~~~~~~~~~~l~~~~~~~---~~~~~~~--------------~---~~~~------------------~~~~------- 219 (417)
T PRK10489 185 GTFITLLPLLRLPALPPPP---QPREHPL--------------R---SLLA------------------GFRF------- 219 (417)
T ss_pred HHHHHHHHHHhCCCCCCCC---cccccch--------------H---HHHH------------------HHHH-------
Confidence 7776666666777754310 0000000 0 0000 0111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
.++++.++...+..++... ......+.|.|+++..+.+....+.+.....++.+++.++.+++.||.++++.+..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~ 298 (417)
T PRK10489 220 LLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLG 298 (417)
T ss_pred HHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHH
Confidence 1222232222222222221 345667889999886666667777788888999999999999999998777777777776
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
.+++.+++.+... +. ......+..+++.....+...+++.|..|++.||+++|+.+...++|..+++
T Consensus 299 ~~~~~~~~~~~~~----------~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 299 SFLAVGLFGLMPM----------WI---LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHHHccch----------HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 6666655543211 11 1122222233333333345567788999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 009185 476 MSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIG 521 (541)
Q Consensus 476 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (541)
.+.|.+.+..|+...++..+++.++..++.+..+++.|+++++|.+
T Consensus 366 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 366 ALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999988888888887777777776777877776665554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=276.87 Aligned_cols=355 Identities=15% Similarity=0.116 Sum_probs=255.7
Q ss_pred hhhhcccchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh----
Q 009185 80 ILLGYDIGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL---- 154 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---- 154 (541)
++.........|.+|. +.+|+|.|..++|++.+++.+++.++++++|+++||+||||++..+.+...++.+....
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4444556667788884 68899999999999999999999999999999999999999999998887776553322
Q ss_pred ----cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHH
Q 009185 155 ----APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLML 230 (541)
Q Consensus 155 ----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f 230 (541)
.+|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+. +..|||+.+
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~~ 181 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH---SHFGFAALA 181 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH---hccChHHHH
Confidence 3588999999999999999888989999999999999999999999999999999999999988 678999987
Q ss_pred HhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 231 GLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
++..+..++..+.....||.++ +++. . .+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~----~~~~------------~------------------------------~~~~~~~ 215 (392)
T PRK12382 182 LTTMVLPLLAWAFNGTVRKVPA----HAGE------------R------------------------------PSLWSVV 215 (392)
T ss_pred HHHHHHHHHHHHHHHhccCCCC----Cccc------------C------------------------------chHHHHH
Confidence 7655444433332222333221 0000 0 0000000
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 009185 311 LRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390 (541)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 390 (541)
+ ....+.+. .++..........+.|.++++.+.. ..+.......++.+++.+..|++.||+|+|+.+.
T Consensus 216 ~----~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 283 (392)
T PRK12382 216 G----LIWKPGLG-----LALQGVGFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI 283 (392)
T ss_pred H----HHHHhHHH-----HHHHHHHHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence 0 01111111 1112233444556777777765432 2343555677788899999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHH
Q 009185 391 LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLV 470 (541)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 470 (541)
.+..+.+++..++.+... .+ ......+..+.......+...+...|.+|++.|+++.|+.+...+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (392)
T PRK12382 284 VSLLVETVGLLLLWLAPT---------AW----VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA 350 (392)
T ss_pred HHHHHHHHHHHHHHHccc---------HH----HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 888777777665544211 11 11122222233333333555566678889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 471 SGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 471 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
..++|.+.|.+.+..||+..+.+.+++.+++.++.+..
T Consensus 351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999888877777665443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=287.95 Aligned_cols=398 Identities=12% Similarity=0.063 Sum_probs=283.8
Q ss_pred ccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhh----------------------hcCCChhHHHHHHHHHHHHHHHH
Q 009185 64 FNKYALTGAILASTNSILLGYDIGVMSGAILYIRD----------------------NLNITSIQVEVLVGSLNVCSLIG 121 (541)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~~~ 121 (541)
..+.++.+..+++++....+.|+..++...+.+.+ |++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 44555566677777778888999999999888876 89999999999999999999999
Q ss_pred HhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHh
Q 009185 122 SLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA--PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLP 199 (541)
Q Consensus 122 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 199 (541)
+++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999887554 56889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCc-chhHHHHHhhhHHHHHHHHHHhc-CCCChHHHHhcCChHHHHHHHHHhcCChhhH
Q 009185 200 EVFINFGILLGYISNYALSGLPEH-INWRLMLGLAALPAIAVAFGVIA-MPESPRWLVMKGRFADAKQALIKTSDSVEEA 277 (541)
Q Consensus 200 ~~~~~~G~~~g~~~~~~l~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (541)
..+..+|.++++++++.+. +. .|||+.|++.++++++..+.+++ .+|+|+.. +...++.++..++
T Consensus 173 ~~~~~~g~~i~~~l~~~l~---~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~i~~-------- 239 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLC---ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKYINS-------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH---hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHHHHh--------
Confidence 9999999999999999988 66 49999999988887776665544 56665411 0000100000000
Q ss_pred HHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchh
Q 009185 278 EFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ 357 (541)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (541)
. .. .+....+.+..+++ .++++.++...+..++.....+.+.+|+|.|+++..+.+...
T Consensus 240 ---------~---~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~ 298 (465)
T TIGR00894 240 ---------S---LQ--GQKGSTRQSLPIKA-------IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE 298 (465)
T ss_pred ---------h---cc--cccCCCCCCCCHHH-------HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence 0 00 00000111122333 345667888888888888888899999999998876777778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH--------HHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH
Q 009185 358 LVGVTVIMGIAKTSFVLISALYLDHFGRRPLL--------MLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVC 429 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (541)
.+....+..++.+++.+++|+++||+++|+.. ..+......+..++...... ...+. . +...
T Consensus 299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~-~~~~ 368 (465)
T TIGR00894 299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS------AAFYL---T-IIIL 368 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC------CchHH---H-HHHH
Confidence 88788888999999999999999997643211 11111111111111111100 00111 1 1111
Q ss_pred HHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHH
Q 009185 430 AAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV---TFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 506 (541)
...+++..+..+.......|..|. .+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.+++.+++.++..
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 369 TLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 122222222223334455566665 7999999999999999999999999887653 366777777777777665543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=259.81 Aligned_cols=371 Identities=15% Similarity=0.136 Sum_probs=297.1
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhccc--
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPS-- 157 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~-- 157 (541)
.+..+.....+++.+.+.+|+|+|++|.+++.++..+..++..++.|.+.||+|.|++..+++++..+..+..+++.+
T Consensus 24 ~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~ 103 (417)
T COG2223 24 DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP 103 (417)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC
Confidence 444456777899999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch---hHHHHHhh
Q 009185 158 -FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN---WRLMLGLA 233 (541)
Q Consensus 158 -~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g---wr~~f~~~ 233 (541)
++++++.+.+.|++ |+.+.....++++||||+++|.++|+.. ..++|..+..+++..+. ...+ ||....+.
T Consensus 104 ~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~---~~~g~~~w~~~~~i~ 178 (417)
T COG2223 104 STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA---VAFGFLAWRNVAGIY 178 (417)
T ss_pred chHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH---HHHhhHHHHHHHHHH
Confidence 45999999999998 4588899999999999999999999999 89999999888888888 6677 99999887
Q ss_pred hHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 234 ALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 234 ~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
.+..++..+ .++...|.|......++... .. .
T Consensus 179 ~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~---------------------------------------~------ 211 (417)
T COG2223 179 VVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQ---------------------------------------L------ 211 (417)
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccccch--hH---------------------------------------H------
Confidence 777776555 44556666543111111000 00 0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
....+++..|.+.+.++..+.++.++..++|.|+++..+.+...++.......+.+.+.++++|+++||+|.+|++.+.
T Consensus 212 -~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~ 290 (417)
T COG2223 212 -KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV 290 (417)
T ss_pred -HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence 1235577889999999999999999999999999999999999998889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHH
Q 009185 393 STGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSG 472 (541)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 472 (541)
+..++++..++.+....... ..+.+ ..+..++..+.+...-...++.++..++|.+ .|.+.|+...++.+|+.
T Consensus 291 f~~~~~~~~~l~~~~~~~~~--~~~~~----~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf 363 (417)
T COG2223 291 FVGMALAAALLSLFLTGFGH--GGSFV----VFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGF 363 (417)
T ss_pred HHHHHHHHHHHHcccccccc--CcchH----HHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhcccccc
Confidence 88888887777664322110 01112 2222222223333333345678888887775 79999999999999999
Q ss_pred HHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhcc
Q 009185 473 IVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 473 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
.-|...+...+..| +...|+++..+.+++.++.+....
T Consensus 364 ~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 364 FLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred chhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 777888888888888887665443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=278.65 Aligned_cols=384 Identities=20% Similarity=0.216 Sum_probs=271.3
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
++.+..+..+.+..+..+++....++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 33444445555666777778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 146 LLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+. +..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g 169 (398)
T TIGR00895 93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI---PVFG 169 (398)
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh---hccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 7789
Q ss_pred hHHHHHhhhHHHH-HHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcc
Q 009185 226 WRLMLGLAALPAI-AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQG 304 (541)
Q Consensus 226 wr~~f~~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (541)
||+.|++.++..+ ...+..+++||++++...+ +.++..+..++....... +...... +...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~ 234 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQA-------------EAQSALP-EQKATQG 234 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccc-------------ccccccc-ccccccc
Confidence 9999998754444 4444566789887654433 222222211111000000 0000000 0000011
Q ss_pred hhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 009185 305 VWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG 384 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 384 (541)
..++..+..++....+..+.+.+..++..........+.|.+.++.+. +....+.......++.+++.++.+++.||++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (398)
T TIGR00895 235 TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLADRLG 313 (398)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111111111112223333444444455556667777888866666554 4556666888889999999999999999999
Q ss_pred CchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHH
Q 009185 385 RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAI 464 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 464 (541)
+|+.. .+..+..+...++..... ..+ ......+..+++.....+...++..|.+|++.|+++.|+.+
T Consensus 314 ~~~~~-~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 380 (398)
T TIGR00895 314 PRVTA-LLLLLGAVFAVLVGSTLF--------SPT----LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380 (398)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHhh--------CHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 98443 333333333333322111 011 12222333344444445667788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009185 465 SVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (541)
...++|+.++|.+.|.+
T Consensus 381 ~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 381 GIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 99999999999999865
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=288.06 Aligned_cols=391 Identities=19% Similarity=0.122 Sum_probs=281.7
Q ss_pred HHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 009185 72 AILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL 151 (541)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 151 (541)
+..++++.++..++....++.+|.+.+++|.+.++.+|+.+.+.++..++.++.|+++||+|||++++.+.++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 35566677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHH
Q 009185 152 MGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG 231 (541)
Q Consensus 152 ~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~ 231 (541)
+++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++. ++.+||+.|+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~w~~~f~ 160 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII---ENYHWRWIFL 160 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc---cCcCceehhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 7889999999
Q ss_pred hhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHH------------HHhcCCh-hhHHHHHHHHHHH----HHhhhh
Q 009185 232 LAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQAL------------IKTSDSV-EEAEFRLNEMTRT----IADLGH 293 (541)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~----~~~~~~ 293 (541)
+.++++++..+ ..+++||+++. .+++.+...... .+..... .+........... ......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW 238 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 97777665544 34456665331 111111111000 0000000 0000000000000 000000
Q ss_pred hhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 009185 294 AASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFV 373 (541)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (541)
+.. .+.+. .+.+.++++.++...+..++.....+...++.|.|+++..+.++...+....+..++.+++.
T Consensus 239 ~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 308 (485)
T TIGR00711 239 ELT-----DDNPL-----VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS 308 (485)
T ss_pred HHc-----CCCCc-----cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 00000 01123445556666666666667777788899999998877788888888888999999999
Q ss_pred HHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc
Q 009185 374 LISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT 453 (541)
Q Consensus 374 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 453 (541)
++.|++.||++||+.+.++..+.+++..++.+.... ....+......++. +++.....+.......+..|+
T Consensus 309 ~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~----g~g~~~~~~~~~~~~~~~~~~ 379 (485)
T TIGR00711 309 PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-----DTPFLAIALPQFIR----GFGMGCFFMPLTTIALSGLPP 379 (485)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-----CCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999888887777777665522111 01112211111222 222211122233445577799
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 454 KFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 454 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 486 (541)
+.++.+.|+.+...++|+.+++.+.+.+.++..
T Consensus 380 ~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 380 HKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=278.07 Aligned_cols=390 Identities=15% Similarity=0.130 Sum_probs=277.4
Q ss_pred HHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 74 LASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
+++++.++..++...+++.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 93 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA 93 (471)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhh
Q 009185 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA 233 (541)
Q Consensus 154 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~ 233 (541)
++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+. ++.|||+.|++.
T Consensus 94 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~---~~~gw~~~f~~~ 170 (471)
T PRK10504 94 LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV---EYASWHWIFLIN 170 (471)
T ss_pred HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---hhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 778999999997
Q ss_pred hHHHHHHHHHH-hcCCCChHHHHhcCChHHHHHHHH---------HhcCChh-h-HHHHHHHHHH----HHHhhhhhhcc
Q 009185 234 ALPAIAVAFGV-IAMPESPRWLVMKGRFADAKQALI---------KTSDSVE-E-AEFRLNEMTR----TIADLGHAASS 297 (541)
Q Consensus 234 ~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~---------~~~~~~~-~-~~~~~~~~~~----~~~~~~~~~~~ 297 (541)
....++..+.. ...|+.+. .+.+.+....... ...+... . .......... .......+ +.
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 246 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH-AR 246 (471)
T ss_pred HHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 76665554433 34454432 1111111111000 0000000 0 0000000000 00000000 00
Q ss_pred CCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009185 298 NNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISA 377 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 377 (541)
...+.. .+.+.++++.+....+..++..........+.|.|++...+.++...+.......++.+++.++.+
T Consensus 247 ~~~~~~--------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (471)
T PRK10504 247 NNNRAL--------FSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV 318 (471)
T ss_pred cCCCCc--------cCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 011245566666666666666666667777889999876666777777788888888888889999
Q ss_pred HHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhh
Q 009185 378 LYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRA 457 (541)
Q Consensus 378 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 457 (541)
++.||+|+|+.+..+..+.++...++.+.... ...+... ...+..+.......+.......+..|++.++
T Consensus 319 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 388 (471)
T PRK10504 319 QVVNRFGYRRVLVATTLGLALVSLLFMLVALL------GWYYLLP----FVLFLQGMVNSTRFSSMNTLTLKDLPDNLAS 388 (471)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHhcccc------ccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCHHhcc
Confidence 99999999999988888777766655442110 1111111 1111222222222234456667888999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009185 458 QGSSLAISVNRLVSGIVAMSFLSISRAVTFG 488 (541)
Q Consensus 458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 488 (541)
.++|+.++..++|..+++.+.|.+.+..|+.
T Consensus 389 ~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 389 SGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998877753
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=282.73 Aligned_cols=374 Identities=14% Similarity=0.106 Sum_probs=267.8
Q ss_pred hhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhccc
Q 009185 78 NSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPS 157 (541)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~ 157 (541)
+++...+++..++...|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS 82 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence 34566678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHH-HHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 158 FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGY-ISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 158 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+. +..+||+.|++.+++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA---ELYSWHWVFIVPGII 159 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH---hcCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 5777776 677999999987766
Q ss_pred HHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCc
Q 009185 237 AIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSR 315 (541)
Q Consensus 237 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (541)
.++..+ ..++.||+|+....+++.++. .+..+ ...++..+.....+... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----------------~~~~~~~~~~~~~~~~~---~~ 211 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPAEEMP--------NEEPD-----------------GDAEKKEEELTKKQIFL---QY 211 (379)
T ss_pred HHHHHHHHheeeCCCccccccCccccCc--------ccccc-----------------cccccccccccchHHHH---HH
Confidence 655444 455577765421100000000 00000 00000000000111111 12
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
.++++.++...+..+...........+.|.|+++..+.+....+.......++.+++.++.+++.||..+++........
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 291 (379)
T TIGR00881 212 VLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291 (379)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence 34556677777777777777778888999999877666777777788889999999999999999986433222222111
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
.......+...... .. ...+ ......+..+.+..+..+....+..|.+|++.|+++.|+.+...++++.++|
T Consensus 292 ~~~~~~~~~~~~~~--~~--~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 363 (379)
T TIGR00881 292 MALIIVSLLVYWLN--PA--ANPL----MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAG 363 (379)
T ss_pred HHHHHHHHHHHhcC--cc--hhHH----HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhh
Confidence 11111111111100 00 0011 1222222333333333344456778999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhH
Q 009185 476 MSFLSISRAVTFGGM 490 (541)
Q Consensus 476 ~~~~~~~~~~g~~~~ 490 (541)
.+.|.+.+..||+..
T Consensus 364 ~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 364 LPLGYLADGFGWAGA 378 (379)
T ss_pred hhHHHHHHhhccccc
Confidence 999999999988654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=269.97 Aligned_cols=371 Identities=13% Similarity=0.079 Sum_probs=265.7
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 009185 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLL 147 (541)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 147 (541)
....++.+++..++.++......+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33344555566677788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC-C-C-
Q 009185 148 GALLM---GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG-L-P- 221 (541)
Q Consensus 148 ~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~-~- 221 (541)
+++++ +++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+.. . +
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99885 5689999999999999999999999999999998877777778999999999999999999875431 0 0
Q ss_pred -----------C-c--------chhHHHHHh-hhHHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHH
Q 009185 222 -----------E-H--------INWRLMLGL-AALPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEF 279 (541)
Q Consensus 222 -----------~-~--------~gwr~~f~~-~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (541)
+ . .+||++|+. .++..++.++. ...+||.+. +++.++...
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~~~~~~-------------- 245 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHSDAKQG-------------- 245 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccccccccc--------------
Confidence 0 0 356777764 33333333222 233454221 000000000
Q ss_pred HHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHH-hhcCCCCchhh
Q 009185 280 RLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVF-KDAGINSKKQL 358 (541)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 358 (541)
.....++ +.+++|.++...+..++..........|.+.|+ ++..+.++..+
T Consensus 246 ---------------------~~~~~~~-------~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~a 297 (438)
T PRK10133 246 ---------------------SFSASLS-------RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA 297 (438)
T ss_pred ---------------------chhhhHH-------HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Confidence 0000011 123445454444555555566666667788775 55667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 009185 359 VGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIG 438 (541)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (541)
+.......++.++++++++++.||+++|+.+..+..+.++.+.+..+... . .....+...+++...
T Consensus 298 g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~l~glg~~~ 363 (438)
T PRK10133 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG----------H----VGLIALTLCSAFMSI 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC----------h----HHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999888876666555444333110 1 112233445556666
Q ss_pred ccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q 009185 439 LGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAV 500 (541)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 500 (541)
..|..++...+..|++ .+.+.++... ..+|+.++|++.|.+.+..| .+..+++.....+.
T Consensus 364 i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 364 QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 6688888888887764 6778888764 55788999999999999887 56666554444333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=265.76 Aligned_cols=375 Identities=16% Similarity=0.108 Sum_probs=264.3
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q 009185 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLL 147 (541)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i 147 (541)
.......+.+..++..++.....|.+|.+.++++.+.++.++..+++.++++++++++|+++||+|||++++.+.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 14 TLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 33344455566677778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhH
Q 009185 148 GALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWR 227 (541)
Q Consensus 148 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr 227 (541)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||++++.+. ++.|||
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~---~~~gw~ 170 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM---HFVHWK 170 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHH
Confidence 99999999999999999999999998777777888999999999999999999999999999999999988 678999
Q ss_pred HHHHhhhHHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchh
Q 009185 228 LMLGLAALPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVW 306 (541)
Q Consensus 228 ~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (541)
+.|++.++..++..+. ++.+||+++. +++..+. ....+ .+
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~~--------------~~~~~----------------------~~ 211 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFSA--------------KSVLR----------------------DF 211 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCCh--------------HHHHH----------------------HH
Confidence 9999988777766554 4557887431 0000000 00000 01
Q ss_pred HHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 009185 307 KELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR 386 (541)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 386 (541)
+ +.++++.++...+..++.......+..+.|.++++..+.+....++.......+.+++..+.+.+.++..++
T Consensus 212 ~-------~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~ 284 (413)
T PRK15403 212 R-------NVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP 284 (413)
T ss_pred H-------HHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 1 234567777777777777777777888899999988777888888777777778888888888776554444
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV 466 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 466 (541)
+.......+..++..++........ . .+. ......+..+.+.....|......... ....+|++.++.+..
T Consensus 285 ~~~~~~~~~~~ig~~l~~~~~~~~~----~-~~~---~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~ 355 (413)
T PRK15403 285 RFIWRAVPIQLVGLALLIVGNLLWP----H-VWL---WSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMV 355 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcc----c-cHH---HHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHH
Confidence 4433333333334333332211110 0 111 111111111222222223333211111 222379999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009185 467 NRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVG 501 (541)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 501 (541)
...+...++...+++.+. +....+...++++.+.
T Consensus 356 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 356 ILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 998889999888877665 4455565555544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.19 Aligned_cols=345 Identities=19% Similarity=0.183 Sum_probs=259.5
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFL 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~ 159 (541)
+...++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+. +..+||+.|++.++..++
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL---VWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 778999999987776665
Q ss_pred HHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 240 VAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 240 ~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
..+ ..++.||+++. +++++. + ...+ .+++ .++
T Consensus 172 ~~~~~~~~~~~~~~~----~~~~~~-----------~---~~~~----------------------~~~~-------~~~ 204 (385)
T TIGR00710 172 LSALIFFILPETLPY----EARIQI-----------S---TYFE----------------------TFLL-------LLK 204 (385)
T ss_pred HHHHHHHhCCCCCCC----cccCCH-----------H---HHHH----------------------HHHH-------HHc
Confidence 544 34456765421 000000 0 0000 0111 123
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
++.++...+..............+.|.++++..+.++...+.......++.+++.++.+++.||+++|+.+..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 205 SKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAV 284 (385)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33444444444445555666777889888866666777777788888999999999999999999999988888777777
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+..++........ ..+. .........+.......+.......|..| +.++++.++.+...+.++.+.+++.
T Consensus 285 ~~~~~~~~~~~~~-----~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~ 355 (385)
T TIGR00710 285 SAVLLEITAILGL-----GSWA---MIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLV 355 (385)
T ss_pred HHHHHHHHHHhcc-----chHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554332110 0111 12222223333333334555566677776 4689999999999988787777777
Q ss_pred HHHHH
Q 009185 479 LSISR 483 (541)
Q Consensus 479 ~~~~~ 483 (541)
+.+.+
T Consensus 356 ~~~~~ 360 (385)
T TIGR00710 356 SLIHG 360 (385)
T ss_pred Hhccc
Confidence 74433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=265.43 Aligned_cols=359 Identities=15% Similarity=0.083 Sum_probs=260.7
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
..+.++.++.........+.+|.+.+++|.|..++|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~ 88 (381)
T PRK03633 9 LLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGL 88 (381)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
++++|++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+. +...|...+..
T Consensus 89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~~~~ 165 (381)
T PRK03633 89 GLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS---TELMSVLPWVT 165 (381)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccccchHHHHH
Confidence 999999999999999999999888888888889999999999999999999999999999999987 33223322222
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 233 AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 233 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
..+...+..+.....++++ .+++ +..+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~------~~~~----------------------------------------~~~~~~~---- 195 (381)
T PRK03633 166 GLVLAAILPLLFTRILNQQ------AENH----------------------------------------DSTSIWP---- 195 (381)
T ss_pred HHHHHHHHHHHHhcccCCC------CCCC----------------------------------------CCCCHHH----
Confidence 2111111111111122210 0000 0000111
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
.++++.++......+.....+.....++|.|+++.+ .+....+.+.....++.+++++..|++.||+++|+.+..+
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~ 271 (381)
T PRK03633 196 ---MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQG-MSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQ 271 (381)
T ss_pred ---HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHH
Confidence 122233333222233333344455567899988764 4555666677888899999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHH
Q 009185 393 STGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSG 472 (541)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 472 (541)
..+..++.+.+.. . +.. .......+.......|...+.+.|..|++.++.+.+..+...++|+.
T Consensus 272 ~~~~~~~~~~~~~--~----------~~~----~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 335 (381)
T PRK03633 272 VFVVILGSIAMLS--Q----------AAM----APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL 335 (381)
T ss_pred HHHHHHHHHHHhh--h----------HHH----HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7776665544321 0 110 11111222222334567777778888888888888888888999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 473 IVAMSFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 473 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
++|.+.|.+.|..++...|.+.+++.++..+.
T Consensus 336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 99999999999999888888877777655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=271.87 Aligned_cols=352 Identities=10% Similarity=-0.006 Sum_probs=266.9
Q ss_pred HhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc
Q 009185 77 TNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP 156 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~ 156 (541)
.+.++..+......+.+|.+..+++.++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788899999999999999999999999999999999999999999999999999999999999888887
Q ss_pred -----cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHH
Q 009185 157 -----SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG 231 (541)
Q Consensus 157 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~ 231 (541)
|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+. +..|||+.|+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~g~~~~~~ 162 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY---ATLGIKWAIW 162 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred hhhHHHHHHHHHHhcC--CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 232 LAALPAIAVAFGVIAM--PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 232 ~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
+.++..++..+..+.+ ||+++ +++.+..++. .++.. +.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~------------------~~~~~- 205 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAA----SEIQALSNAV--------------LRDTR------------------EGIKF- 205 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCC----ccccccchhH--------------HHHHH------------------hHHHH-
Confidence 8777666554444333 33221 0000000000 00000 01111
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHh-hccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchH
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVV-YYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPL 388 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 388 (541)
.++++.++...+..+.......... .+.|.+.++..+.+....+.......++.+++.++.+++.||++||+.
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (365)
T TIGR00900 206 ------VLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL 279 (365)
T ss_pred ------HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 2233444444444444444444444 778888887556666777778888899999999999999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHH
Q 009185 389 LMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNR 468 (541)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 468 (541)
+..+..+.+++...+.+... +.+ ...+..+..+++.....+...++..|..|++.|+++.|+.+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 347 (365)
T TIGR00900 280 MTGAIFVIGLAILVVGLTPP--------NFP----LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSH 347 (365)
T ss_pred HHHHHHHHHHHHHHHHhhch--------hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88776666666555544221 011 222333344444444456677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 009185 469 LVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 469 ~~~~~~~~~~~~~~~~~g 486 (541)
+++.+++.+.|.+.|..|
T Consensus 348 ~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 348 AAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999988754
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=269.30 Aligned_cols=369 Identities=14% Similarity=0.076 Sum_probs=265.7
Q ss_pred HHhhhhhhcccchhhhhHHHHhhhcCCChhH-----HHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 009185 76 STNSILLGYDIGVMSGAILYIRDNLNITSIQ-----VEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL 150 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 150 (541)
+++.++..+......+.+|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 3444556666777889999999999988654 48899999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHH
Q 009185 151 LMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLML 230 (541)
Q Consensus 151 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f 230 (541)
+++++++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|.+++|.+++.+. +..+||+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~ 175 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA---DSYGLRPVF 175 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHH
Confidence 99999999999999999999865 56778888999999999999999999999999999999999988 678999999
Q ss_pred HhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 231 GLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
++.++..++..+ ..+++||+++. .++++ ... .++. .+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~--------------~~~~----------------------~~~ 214 (408)
T PRK09874 176 FITASVLFLCFLVTLFCIRENFQP----VSKKE-MLH--------------MREV----------------------VTS 214 (408)
T ss_pred HHHHHHHHHHHHHHHHHhccCccc----ccchh-hhH--------------HHHH----------------------HHh
Confidence 997777665544 34446654321 00000 000 0000 000
Q ss_pred hcCCCchhHHHHHH-HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009185 310 LLRPSRPLRRILIA-AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKK---QLVGVTVIMGIAKTSFVLISALYLDHFGR 385 (541)
Q Consensus 310 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 385 (541)
++++.++ ......+...........+.+.|..+..+.... ..+......+++.+++.+..|++.||++|
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~ 287 (408)
T PRK09874 215 -------LKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGP 287 (408)
T ss_pred -------CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111212222233334455667777665443322 23434556678888899999999999999
Q ss_pred chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHH
Q 009185 386 RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS 465 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 465 (541)
|+.+..+..+..++.+.+..... .+ .+.+..+..+++.....+...+...+..|++.+|+.+++.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (408)
T PRK09874 288 EKILITALIFSVLLLIPMSFVQT---------PL----QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQS 354 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHhcc---------HH----HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHH
Confidence 99988877766665554443211 12 122222333333334445555666777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
...+|..++|.+.|.+.+..|++..|.+.+++.+++.++.+...
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888777665443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=266.46 Aligned_cols=360 Identities=14% Similarity=0.126 Sum_probs=256.5
Q ss_pred hhhhhcccchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHhcc
Q 009185 79 SILLGYDIGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIV-LAAATFLLGALLMGLAP 156 (541)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~a~ 156 (541)
+++..+......+.+|. +++++|.|+.+.|++.+++.+...+.+++.|+++||+||||.++ .+.++.+++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666778888884 67899999999999999999999999999999999999888755 46666677888899999
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhh--chHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhh
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFL--SSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAA 234 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~ 234 (541)
|++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.+++|.+++.+. +..|||+.|++.+
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~---~~~~~~~~f~~~~ 162 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA---LGFGFTVMFLTAA 162 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH---HhcccHHHHHHHH
Confidence 999999999999988888888888899999887777754 57778888999999999999998 7789999999988
Q ss_pred HHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCC
Q 009185 235 LPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRP 313 (541)
Q Consensus 235 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (541)
++.++..+. ++++||+|++. +.++. . ...++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~------------------------------~~~~~~---- 195 (375)
T TIGR00899 163 LAFVLCGVLVWLFLPSYPRGA----PGALT---------R------------------------------LEVRGL---- 195 (375)
T ss_pred HHHHHHHHHHHHhCCCcccCc----ccccC---------c------------------------------chhhhh----
Confidence 776665554 45578875411 00000 0 000001
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhH
Q 009185 314 SRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 393 (541)
++++.++......+...........+.|.++++..+.+....+.......+..+++.++.|++.||++||+.+.++.
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~ 272 (375)
T TIGR00899 196 ---LASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA 272 (375)
T ss_pred ---hcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence 11122222222222223333444566788886665556666666666666777888899999999999999887766
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
.+..+....+..... .+. ........++......+....+..|..|++ ++++.|+.+...++|..+
T Consensus 273 ~~~~~~~~~~~~~~~---------~~~----~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 338 (375)
T TIGR00899 273 LAGVAFYTGLAADNS---------LWA----LLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWII 338 (375)
T ss_pred HHHHHHHHHHHHHHH---------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHH
Confidence 655444433322111 121 111222222222223345556778887765 679999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009185 474 VAMSFLSISRAVTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 474 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 505 (541)
+|.+.|.+.+..|++..+++.+++.+++.++.
T Consensus 339 g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 339 AGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999888888887777666654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=269.76 Aligned_cols=392 Identities=15% Similarity=0.142 Sum_probs=273.9
Q ss_pred cCCccchHHHHHHHHHHhhhhhhcccchhhh-hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHH
Q 009185 61 KPRFNKYALTGAILASTNSILLGYDIGVMSG-AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIV 139 (541)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 139 (541)
++..+|..+.++..++..++....+...++- .+..+.+|.+....+.+++.++++++++++++++|.+.||++..+.+.
T Consensus 36 ~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~ 115 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLS 115 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHH
Confidence 4455666777778888888888887765543 333567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC
Q 009185 140 LAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG 219 (541)
Q Consensus 140 ~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 219 (541)
...+.+++..++.....|++.+++.|++.|+.++..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+.+
T Consensus 116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999998632
Q ss_pred C---CCcchhHHHHHhhhHHHHHHHH-HHhcCCCChHH--HHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhh
Q 009185 220 L---PEHINWRLMLGLAALPAIAVAF-GVIAMPESPRW--LVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGH 293 (541)
Q Consensus 220 ~---~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (541)
. ....||||.|++.+++.++..+ .++++|+.|.. ...+.+++-..+..++....
T Consensus 196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~-------------------- 255 (495)
T KOG2533|consen 196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSG-------------------- 255 (495)
T ss_pred hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCC--------------------
Confidence 1 1457999999998888777665 55669999862 11111111111111111000
Q ss_pred hhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 009185 294 AASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFV 373 (541)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (541)
...++.++++.. +.++.+.+|...+..++.....+++.+|+|.++.+..+.+..++..+..+..++++++.
T Consensus 256 -----~~~~~~~~~~~~----~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~ 326 (495)
T KOG2533|consen 256 -----GIENKFKWKGFK----EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGL 326 (495)
T ss_pred -----CcccccCHHHHH----HHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHH
Confidence 000112233333 36788999999999999999999999999999999555677777778999999999999
Q ss_pred HHHHHHHhhc----CCchHHHHhHHHHHHHH-HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeec
Q 009185 374 LISALYLDHF----GRRPLLMLGSTGMAVSL-AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSS 448 (541)
Q Consensus 374 ~~~g~l~d~~----g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (541)
+++|+++||. .+|........+..+.. +.+... ... . .....+...........+......+
T Consensus 327 i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~-~~~--------~----~~~~~~~~~~~~~~~~~~~~~~w~s 393 (495)
T KOG2533|consen 327 ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA-AVL--------P----GAYGAFLIGPYGLIATAIIALSWTS 393 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccc--------h----HHhHHHHhcchhhHHHHHHHHhhcc
Confidence 9999999994 44544444433333332 222221 100 1 1111111111212222234445555
Q ss_pred ccCCc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHH
Q 009185 449 EIFPT-KFRAQGSSLAISVNRLVSGIVAMSFLSISR-AVTFGGMFFIL 494 (541)
Q Consensus 449 ~~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 494 (541)
+.... ..+-+..+......+.++.+.|.+...... .+++...|.+.
T Consensus 394 ~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 394 ANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred ccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 55544 344444555555555556666655544333 24566666333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=260.73 Aligned_cols=344 Identities=24% Similarity=0.356 Sum_probs=294.8
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL 154 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 154 (541)
+.+..+...++.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34455667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhh
Q 009185 155 APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAA 234 (541)
Q Consensus 155 a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~ 234 (541)
+++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+. +..+||+.+++.+
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA---ESLGWRWLFLILA 160 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 7778999999987
Q ss_pred HHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 235 LPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 235 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
++.++..+...+++
T Consensus 161 ~~~~~~~~~~~~~~------------------------------------------------------------------ 174 (352)
T cd06174 161 ILGLLLALLLLFLL------------------------------------------------------------------ 174 (352)
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 77776655443321
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCch-HHHHhH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRP-LLMLGS 393 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~ 393 (541)
|.++...+..+...........+.|.+.++..+.+....+.......++.+++.++.+++.||++||+ .+..+.
T Consensus 175 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T cd06174 175 -----RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL 249 (352)
T ss_pred -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22444555666667777888889999998876667777787889999999999999999999999999 888888
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
.+..++.+.+..... ........+..+.......+....+..|..|+++|++..|+.+...+++..+
T Consensus 250 ~~~~i~~~~~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (352)
T cd06174 250 LLAALGLLLLALAPS-------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL 316 (352)
T ss_pred HHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777665322 1133444555556666667888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009185 474 VAMSFLSISRAVTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 474 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 505 (541)
++.+.+.+.+..++...+.+.+++.+++.++.
T Consensus 317 ~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 317 GPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=260.39 Aligned_cols=345 Identities=17% Similarity=0.116 Sum_probs=249.9
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFL 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~ 159 (541)
.+..+....+.|.+|.+.+++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++++
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 95 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA 95 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33345567788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+. +..|||+.|++.+++.++
T Consensus 96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL---NHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHH
Confidence 99999999999988888888899999999999999999988889999999999999998 778999999988777776
Q ss_pred HHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHH
Q 009185 240 VAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRR 319 (541)
Q Consensus 240 ~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (541)
..+..++++|+++ +++.++.+ ..+++. +++
T Consensus 173 ~~~~~~~~~~~~~----~~~~~~~~---------------------------------------~~~~~~-------~~~ 202 (401)
T PRK11043 173 LILPTLRLKPSKK----ARKQSQDA---------------------------------------LTFKQL-------LKS 202 (401)
T ss_pred HHHHHHHcCCCCC----ccccchHH---------------------------------------HHHHHH-------HcC
Confidence 6665555555432 00000000 001111 222
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVS 399 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 399 (541)
+.++...+........+.....+.|.++++.+ .+....+.......++.+++.++.+++.||+++|+.........+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQMG-YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 22332222233333444556677888887754 45566666667777888999999999999999988766655555554
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
...+........ . .+. .........++......|.......+..|+ .++++.|+.+.....++..++.+.+
T Consensus 282 ~~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 282 VIAIWLASLLSH----P-SLV---PLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHHhcc----C-cHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332221110 0 111 111222222333333445555555566664 6999999999999999999999999
Q ss_pred HHHHhhcc
Q 009185 480 SISRAVTF 487 (541)
Q Consensus 480 ~~~~~~g~ 487 (541)
.+.+....
T Consensus 353 ~l~~~~~~ 360 (401)
T PRK11043 353 ALISTPLL 360 (401)
T ss_pred HccCCChh
Confidence 88775443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.36 Aligned_cols=407 Identities=22% Similarity=0.254 Sum_probs=283.9
Q ss_pred cccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 009185 84 YDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMA 163 (541)
Q Consensus 84 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~ 163 (541)
.+....++..+ .+.+..+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++
T Consensus 99 ~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~ 176 (521)
T KOG0255|consen 99 YGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLI 176 (521)
T ss_pred CCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33333444444 4666778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
.|+++|++.++.......++.|++++++|+.+..+ ......|..+++..++++. . +||+.+++..++.++.++.
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~---~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT---R--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH---h--hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 6666777777777777776 3 9999999999999888777
Q ss_pred HhcCCCChHHHHhcCChHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHH
Q 009185 244 VIAMPESPRWLVMKGRFADAKQALIKTSDSV---EEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRI 320 (541)
Q Consensus 244 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (541)
+++.||+|+|+..+++.+++.+.+++..+.+ ........... ...........++..+.++++.+ .+++.
T Consensus 251 ~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~--~l~~~ 323 (521)
T KOG0255|consen 251 WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-----LLRPLKLLFTEPKISFLDLFRTP--RLRYR 323 (521)
T ss_pred HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-----HhhHhhhhccCCCCchhhhhcCH--HHHHH
Confidence 7777899999999999999988887764322 11111111110 00000111111222355555431 13333
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
.+... +..+.....+++.... ....+. .........+.....+....+...|++|||.....+..+..+++
T Consensus 324 ~~~~~-~~~~~~~~~y~gl~~~----~~~lg~----~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~ 394 (521)
T KOG0255|consen 324 TLYLL-FIWFVFSLVYYGLSLN----VSGLGG----NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGL 394 (521)
T ss_pred HHHHH-HHHHHHhHHHHhhhhh----hhhcCc----hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 33332 2222233333333222 222222 22224445555777888888999999999999999999999998
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
+..++...... .+. ......+..++...+. ...+.+..|++|+..|..+.+.......++++++|.+...
T Consensus 395 ~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~ 464 (521)
T KOG0255|consen 395 LLFGWLPDDLG------GWL---HWILPLLGKFFIGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL 464 (521)
T ss_pred HHHHHhhccch------hHH---HHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887654321 011 1111111112222222 2337888999999999999999999999999999888765
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHhc
Q 009185 481 ISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLEDIGLLFE 525 (541)
Q Consensus 481 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (541)
... ......+.+++....+.+++..+++||++++.+.+..++.+
T Consensus 465 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 465 LRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred Hhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 443 33223333356667777777778999999988866655444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=268.62 Aligned_cols=347 Identities=21% Similarity=0.253 Sum_probs=259.0
Q ss_pred HhhhhhhcccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 009185 77 TNSILLGYDIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA 155 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a 155 (541)
++.++..++.....+.+| .+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 444666667778899999 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhH
Q 009185 156 PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235 (541)
Q Consensus 156 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~ 235 (541)
+|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+. +..+||+.|++.++
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~---~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI---SYFGWRWAFLISAI 159 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHCHHCCHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh---hccccccccccccc
Confidence 888899999999999999999999999999999999999999999999999999999999998 78899999999888
Q ss_pred HHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 236 PAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 236 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
+.++..++ .++++++++....+++.++.+ +.+..+++ ..+
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~---~~~ 200 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESES------------------------------------KKPKPLKP---GFK 200 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--------------------------------------HHHCCCH----CT
T ss_pred hhhhhhhhHhhhhhhccccccccccccccc------------------------------------cccccccc---ccc
Confidence 88777653 344554432111111100000 00000111 011
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS-KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 393 (541)
...+++.+|......+...........+.|.|+.+..+.+ ....+.......+..+++.++.+++.||+++|+......
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (352)
T PF07690_consen 201 SLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAI 280 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 2334444444444555555566678889999866555555 567776788899999999999999999999987777666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
....+....+....... ..+ ......+..+++.....+....+..|..|++.+|++.|+.+...++++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 281 LLLILGALGLLLLPFSS------SPV----WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp HHHHHHHHHHCCSHHHC------HHH----HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh------hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555554332210 001 12223333444444446777889999999999999999999999999998
Q ss_pred HH
Q 009185 474 VA 475 (541)
Q Consensus 474 ~~ 475 (541)
+|
T Consensus 351 gP 352 (352)
T PF07690_consen 351 GP 352 (352)
T ss_dssp HH
T ss_pred CC
Confidence 87
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=260.22 Aligned_cols=348 Identities=16% Similarity=0.139 Sum_probs=244.0
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFL 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~ 159 (541)
+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++
T Consensus 13 ~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~ 92 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSS 92 (392)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34444555567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+. +..+||+.|++.++..++
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~---~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM---LKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999887 678999999997776665
Q ss_pred HHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 240 VAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 240 ~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
..+ ..+++||+++.. +++... . . + ..++ .++
T Consensus 170 ~~~~~~~~~~~~~~~~--~~~~~~-------------~-~---~----------------------~~~~-------~~~ 201 (392)
T PRK10473 170 VLLLSLFILKETRPAR--APAASS-------------K-P---R----------------------ENSE-------SLL 201 (392)
T ss_pred HHHHHHHHcCCCCCcc--cCCccc-------------h-H---H----------------------HHHH-------HHh
Confidence 544 445567764210 000000 0 0 0 0001 122
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
++.++...+...+..........+.|.++.+..+.+....+.......++.+++.++.+++.||+|+|+.+.++..+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~ 281 (392)
T PRK10473 202 NRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLA 281 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22222222222222233334455667777666555666677678888999999999999999999999998888877777
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+.+++.+.... +.. .........+.... . +. ....+..|.+.|+ |.......++..+++.+.
T Consensus 282 ~~~~~~~~~~~---------~~~--~~~~~l~~~g~~~~-~-~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~ 343 (392)
T PRK10473 282 AGITLALSPSH---------AVS--LFGITLICAGFSVG-F-GV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLW 343 (392)
T ss_pred HHHHHHHHHHH---------HHH--HHHHHHHHHHHHHH-h-HH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHH
Confidence 76666553221 110 11111111111111 1 11 2223344544343 444455566777788888
Q ss_pred HHHHHhhcchhHHHHHHH
Q 009185 479 LSISRAVTFGGMFFILSG 496 (541)
Q Consensus 479 ~~~~~~~g~~~~~~~~~~ 496 (541)
+.+.+..|+.....+.+.
T Consensus 344 ~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 344 IWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHhccchhHHHHHH
Confidence 888888887554444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=258.59 Aligned_cols=360 Identities=12% Similarity=0.089 Sum_probs=250.4
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH---h-cccHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG---L-APSFLFLMAG 164 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-a~~~~~l~~~ 164 (541)
..+.++.+.+|+|.++++.+++.+.+.+++.+++++.|+++||+||||++..+.++.+++++++. + .++++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 44455666689999999999999999999999999999999999999999999999999877653 3 3588999999
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHH-HHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGI-LLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF- 242 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~- 242 (541)
|+++|++.+...+...+.+.+++|+++|++++|+...+.++|. +++|.+++.+. +..||+..++......++..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~---~~~g~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI---PAFGEMNTLWSALAFVLTGGVI 188 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHH
Confidence 9999999988888888889999999999999999999999997 68999998887 677876665554333333222
Q ss_pred HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHH
Q 009185 243 GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILI 322 (541)
Q Consensus 243 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
..++.++.++ +++.++ + ++ ..+.. ..++ ..+++|.+
T Consensus 189 ~~~~~~~~~~----~~~~~~----------~-~~----~~~~~------------------~~~~-------~~~~~~~~ 224 (402)
T TIGR00897 189 ALFSNKDIFT----PQHMQT----------R-EK----FSELG------------------KAAT-------ILFTNPNV 224 (402)
T ss_pred HHhccCCCCC----cccccC----------C-cc----hhhHH------------------HHHH-------HHHcChhH
Confidence 2333443321 000000 0 00 00000 0011 13445666
Q ss_pred HHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH-HhHHHHHHHHH
Q 009185 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM-LGSTGMAVSLA 401 (541)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~ 401 (541)
+...+..++.....+...++.|.|+++.+. +....+.......++.+++.+..|+++||++||+.+. .+.....++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~ 303 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTL 303 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 666666666677778888899999987554 4455565777888999999999999999999887664 23333333333
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
.+........ ...+. .....+..+.+..+..+.. ....|.. +++|+++.|+.+...++++.++|.+.+.+
T Consensus 304 ~l~~~~~~~~----~~~~~----~~~~~~~~G~~~~~~~~~~-~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l 373 (402)
T TIGR00897 304 ALYYIPQHFG----HSFAV----ALIIAIALGIFLAGYVPLA-AVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLF 373 (402)
T ss_pred HHHHHHHccC----CcHHH----HHHHHHHHHHHHHHHHHHH-HHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111100 01111 1112222222222223332 3445664 45799999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHH
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
.+..|+...+++.+++.+++.++..
T Consensus 374 ~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 374 IGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999998898888888777666553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=262.75 Aligned_cols=365 Identities=20% Similarity=0.226 Sum_probs=254.1
Q ss_pred hhhhcccchhhhhHHHHhhhcC--CChhHHHHHHHH-----HHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLN--ITSIQVEVLVGS-----LNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
+.+++++..++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888764 445666655543 233345789999999999999999999999999999999
Q ss_pred HhcccHH--------HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC----
Q 009185 153 GLAPSFL--------FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL---- 220 (541)
Q Consensus 153 ~~a~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---- 220 (541)
+++++++ .++++|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999875 4888999999999999999999999999999999999999999999999999887765420
Q ss_pred -CCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCC
Q 009185 221 -PEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNN 299 (541)
Q Consensus 221 -~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (541)
.+..+||+.|++.+++.++..+....+||++++...+++.+
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 204 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK-------------------------------------- 204 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc--------------------------------------
Confidence 13568999999877776666555556777654221100000
Q ss_pred cCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 300 WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALY 379 (541)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 379 (541)
..+...++.+++ +++.++......++..........+.|.|+++..+.+....+.......++.+++.++.|++
T Consensus 205 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 278 (394)
T TIGR00883 205 -KKRGPIRETLTK-----HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278 (394)
T ss_pred -cccCCHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112222221 11124444455555566667777889999976655566667767888889999999999999
Q ss_pred HhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhh
Q 009185 380 LDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQG 459 (541)
Q Consensus 380 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 459 (541)
.||+|||+.+.....+..+....+....... ...+ .........++......+...++..|.+|++.|+++
T Consensus 279 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 349 (394)
T TIGR00883 279 SDRIGRRPVLIIFTVLAALLAVPLLMALLDS-----GSFT----LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG 349 (394)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHhcC-----CchH----HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence 9999999877655444433322111111100 0011 112222223333333445667888999999999999
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHH
Q 009185 460 SSLAI-SVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGI 497 (541)
Q Consensus 460 ~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 497 (541)
.++.+ ....++..++|.+.|.+.+..| +...++....+
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 99854 4456788899999999999888 65555444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.80 Aligned_cols=371 Identities=15% Similarity=0.152 Sum_probs=260.6
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
++....++++++...++..|+..+..+.+.+++.||++++..|++.+.+.+.+.+++|+.|+++|||.||+++.+|..+|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 33444557778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 146 LLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 146 ~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
.++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|..+|++++++++.+..+|..+|.+.+..+. +..+
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va---~~~~ 185 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA---SLTF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec---cCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 4444
Q ss_pred -hHHHHHhhhHHHHHHHHHH-hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCc
Q 009185 226 -WRLMLGLAALPAIAVAFGV-IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQ 303 (541)
Q Consensus 226 -wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (541)
|||.|+..++++++..++. ++.+|+++ +..++... . ........
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-------~----------------------~~~~~~~t 231 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-------E----------------------NKMVKPFT 231 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-------C----------------------CcCCCCcc
Confidence 9999999999988876655 45666543 11110000 0 00001122
Q ss_pred chhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhc---CCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009185 304 GVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDA---GINSKKQLVGVTVIMGIAKTSFVLISALYL 380 (541)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 380 (541)
+.++++.. ..+.+.+....+......+....+.+|.|.++... .+.+......+..+...++.+|.+.+|.++
T Consensus 232 s~~kDl~~----l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiis 307 (493)
T KOG1330|consen 232 SVWKDLKV----LAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIIS 307 (493)
T ss_pred chHHHHHH----HHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHH
Confidence 23333322 22334444445555555555666667777665422 222333444477788899999999999999
Q ss_pred hhcC----CchHHHHhHHHHH----HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 381 DHFG----RRPLLMLGSTGMA----VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 381 d~~g----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
||+. +-......-+..+ .+..++.+..... ....+..++.+.+........+.+ ..-+..|++|
T Consensus 308 d~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~-------~~s~~~~~il~~~g~~~~~~~~a~-n~~i~l~vV~ 379 (493)
T KOG1330|consen 308 DKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT-------SSSMIFGLILFLVGETISWFNWAT-NNPIFLEVVP 379 (493)
T ss_pred HHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHhccccc-ccceeeEecC
Confidence 9943 2111111111111 1111111111110 011111222222222222233333 3456688899
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAM-SFLSISRAV 485 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 485 (541)
++.|.+++++...+..+.+-.+++ +.|.+.|..
T Consensus 380 p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 380 PSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 999999999999888776665555 999888764
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=258.62 Aligned_cols=370 Identities=12% Similarity=-0.016 Sum_probs=252.4
Q ss_pred HHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc
Q 009185 76 STNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA 155 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a 155 (541)
+++.++..++........+.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 34445555544445666666789999999999999999999999999999999999999999999999999999988887
Q ss_pred ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhH
Q 009185 156 PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235 (541)
Q Consensus 156 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~ 235 (541)
.+. ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+. +. .|+..+.+.+.
T Consensus 89 ~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~---~~-~~~~~~~i~~~ 161 (393)
T PRK11195 89 IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA---DP-HAEAALAVCAL 161 (393)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHH
Confidence 664 788999999999999999999999999999999999999999999999999999998 43 47777776655
Q ss_pred HHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCc
Q 009185 236 PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSR 315 (541)
Q Consensus 236 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (541)
..++..+..+.+||+|... ++++++.... ..+..+ .++.+++
T Consensus 162 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~--------------~~~~~~------------------~~~~l~~---- 203 (393)
T PRK11195 162 IYLLAALFNLFIPRLGARR--PGQSWNPIAL--------------LRDFFH------------------ACRVLWR---- 203 (393)
T ss_pred HHHHHHHHHhcCCCCcccc--cccCCCHHHH--------------HHHHHH------------------HHHHHHh----
Confidence 5555555566788865311 0000000000 000000 0111111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
++.+.......++.........+..|.++++..+.++...+......+++.+++.+..+++.||.++++.+..+. +
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~ 279 (393)
T PRK11195 204 ---DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-L 279 (393)
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-H
Confidence 121111111112222223344455566777666777778888889999999999999999999998887776664 3
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh-hhhhhHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF-RAQGSSLAISVNRLVSGIV 474 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~ 474 (541)
.++...++.+... .+ ......+..+++.....+...+...+..|++. +|.+.++.+...+++..++
T Consensus 280 ~~~~~~~~~~~~~---------~~----~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 280 MGLVVLLMALQHS---------LL----PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred HHHHHHHHHHHhH---------HH----HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHH
Confidence 3333322222111 11 11222222233322223334455667655554 7999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 475 AMSFLSISRAVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 475 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
..+.+.+ +..|....+.+.+...+++..+.+.+
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998854 67887777766665555555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=257.90 Aligned_cols=335 Identities=17% Similarity=0.142 Sum_probs=240.0
Q ss_pred ccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 009185 85 DIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAG 164 (541)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~ 164 (541)
...+..|.+|.+.+++|+++++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44557799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-H
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF-G 243 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~-~ 243 (541)
|+++|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+. +..+||+.|++.+++.++..+ .
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL---VWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 778999999987777666544 4
Q ss_pred HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHH
Q 009185 244 VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIA 323 (541)
Q Consensus 244 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
.+++||+++. +++++ .+ .+... ..+++ .++++.++
T Consensus 163 ~~~~~~~~~~----~~~~~----------~~--~~~~~----------------------~~~~~-------~~~~~~~~ 197 (377)
T PRK11102 163 FFFIPETLPK----ERRQP----------FH--LRTTI----------------------RNFAS-------LFRHKRVL 197 (377)
T ss_pred HHhCCccCcc----cccCC----------CC--hHHHH----------------------HHHHH-------HHcChHHH
Confidence 4567775421 00000 00 00000 00111 22333444
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHH
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVL 403 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 403 (541)
...+..++..........+.|.++.+..+.++...+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 277 (377)
T PRK11102 198 GYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWL 277 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566667777887777656667777878889999999999999999999999998887776654433333
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHH-HHHHHHHH
Q 009185 404 GLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRL-VSGIVAMS 477 (541)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~ 477 (541)
....... ...+. ..+......+.. ....+....+..|..| +.++.+.++.+..... +..+++.+
T Consensus 278 ~~~~~~~-----~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 278 VVSALLD-----LGFWA---LVVGVAAFVGCV-SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHh-----hhHHH---HHHHHHHHHHHH-HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2221110 00111 111111111111 1122233345567666 6789999988776553 33444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=257.56 Aligned_cols=359 Identities=13% Similarity=0.069 Sum_probs=263.3
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
+++++..+..++..+..++++|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34455567777888889999999999999999999999999999999999999999999999999999999999999886
Q ss_pred Hh---cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCC--------
Q 009185 153 GL---APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLP-------- 221 (541)
Q Consensus 153 ~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------- 221 (541)
.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.+++.+....
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 4689999999999999999999999999999999999999999999999999999999988774210
Q ss_pred ---------------CcchhHHHHHhhhHHHHHHHHHHhc--CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHH
Q 009185 222 ---------------EHINWRLMLGLAALPAIAVAFGVIA--MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEM 284 (541)
Q Consensus 222 ---------------~~~gwr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (541)
+..+||++|++.+++.++..+...+ .||.++ ++ ++ + . .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~--~-------~--~-------- 220 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK--Q-------I--S-------- 220 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc--c-------c--c--------
Confidence 1246999999877766655444333 343211 00 00 0 0 0
Q ss_pred HHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCC-CCchhhHHHHH
Q 009185 285 TRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGI-NSKKQLVGVTV 363 (541)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 363 (541)
.....+ +.+++|.++...+..+++.........+++.|.++.+. .+.........
T Consensus 221 -----------------~~~~~~-------~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~ 276 (410)
T TIGR00885 221 -----------------FSASLS-------RLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNI 276 (410)
T ss_pred -----------------chhhHH-------HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 000001 12344555555666666667776777888999876542 23333333555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccc
Q 009185 364 IMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPIT 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (541)
....+..+|+++++++.||+++|+.+.+...+.++.+++....... .....+...+++....+|..
T Consensus 277 ~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~--------------~~~~~l~~~glf~s~~fp~i 342 (410)
T TIGR00885 277 GAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH--------------VGLYCLTLCSAFMSLMFPTI 342 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh--------------HHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999998888777777766666542211 12233334445555556888
Q ss_pred eeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------cchhHHHHHHH
Q 009185 444 WVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV------TFGGMFFILSG 496 (541)
Q Consensus 444 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~ 496 (541)
++...+..+++.+..+.++.... +|+++.|++.|.+.|.. +++..|++...
T Consensus 343 ~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 343 YGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 88888988887654455555443 89999999999999954 35556655433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=253.68 Aligned_cols=352 Identities=15% Similarity=0.060 Sum_probs=247.2
Q ss_pred ccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 009185 85 DIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMA 163 (541)
Q Consensus 85 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~ 163 (541)
......+.++ ++++++|.|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL 104 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3344555555 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF- 242 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~- 242 (541)
.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..|||+.|++.++..++..+
T Consensus 105 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 105 SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999999999999999999999999999999999999999987 46999999987766665543
Q ss_pred HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHH
Q 009185 243 GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILI 322 (541)
Q Consensus 243 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
..+++||.+. +++.++. +..++.. ++++.+
T Consensus 181 ~~~~~~~~~~----~~~~~~~---------------------------------------~~~~~~~-------~~~~~~ 210 (400)
T PRK11646 181 NAWLLPAYKL----STVRTPV---------------------------------------REGMTRV-------LRDKRF 210 (400)
T ss_pred HHHhCCcccc----cccchhh---------------------------------------HHHHHHH-------HcCchH
Confidence 3344554311 0000000 0011111 222333
Q ss_pred HHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHHHHhHHHHHHHHH
Q 009185 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYL-DHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~ 401 (541)
+...+..+...........+.|.++++.++. +...+.+.....++...+....+++. ||++.++.+..+..+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 289 (400)
T PRK11646 211 VTYVLTLTGYYMLAVQVMLMLPIMVNDIAGS-PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMF 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 3332332222222333456789998887764 45556566666666665555555555 456666666666666666665
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
++...... +. +.......+.......|...+++.+..|++.||++.|+.+...++|..++|.+.|.+
T Consensus 290 ~l~~~~~~---------~~----~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 290 PIGMVSNL---------QQ----LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHhhhH---------HH----HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 55443211 11 111112222222233456667888999999999999999999999999999999999
Q ss_pred HHhhc----chhHHHHHHHHHHHHHHH
Q 009185 482 SRAVT----FGGMFFILSGITAVGTVF 504 (541)
Q Consensus 482 ~~~~g----~~~~~~~~~~~~~~~~~~ 504 (541)
.+..+ ....+.+.+.+++++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 357 FDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 98753 234444444444444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=257.54 Aligned_cols=365 Identities=17% Similarity=0.187 Sum_probs=275.1
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHhhcccc
Q 009185 97 RDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP--SFLFLMAGRVVSGIGVGY 174 (541)
Q Consensus 97 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l~G~~~g~ 174 (541)
..+++++..+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999999875 456778999999999999
Q ss_pred cccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc-chhHHHHHhhhHHHHHHHHHHhc-CCCChH
Q 009185 175 SLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-INWRLMLGLAALPAIAVAFGVIA-MPESPR 252 (541)
Q Consensus 175 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~-~~e~p~ 252 (541)
.+|+...+.+.|.|++||++..++...+..+|.+++..+++++. +. .||+++|++.++.+++..+++++ ..|+|.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc---~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC---ESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---ccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999998 56 89999999999998888776654 566665
Q ss_pred HHHhcCCh-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHH
Q 009185 253 WLVMKGRF-ADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFM 331 (541)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (541)
. ++.. +++.+..++.. . .+..+.+.+.+|++++ +++.+|.+.+..++
T Consensus 222 ~---h~~is~~El~~I~~~k---------------------~-~~~~~~~~~vP~~~i~-------ts~~vwai~~~~f~ 269 (466)
T KOG2532|consen 222 K---HPNISEKELKYIEKGK---------------------S-EAHVKKKPPVPYKAIL-------TSPPVWAIWISAFG 269 (466)
T ss_pred c---CCCCCHHHHHHHHhcc---------------------c-ccccCCCCCCCHHHHH-------cCHHHHHHHHHHHH
Confidence 2 1111 11111111000 0 0000111344566554 47889999999999
Q ss_pred HhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--------h-HHHHhHHHHHHHHHH
Q 009185 332 QASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR--------P-LLMLGSTGMAVSLAV 402 (541)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~ 402 (541)
...+++.+..|+|.|+++..+.+....|++.++..+...+..+++|.++||+.+| | .-.++....+++++.
T Consensus 270 ~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~ 349 (466)
T KOG2532|consen 270 GNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV 349 (466)
T ss_pred HHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe
Confidence 9999999999999999999999999999999999999999999999999998652 1 122333334444444
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009185 403 LGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSIS 482 (541)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 482 (541)
+++.... ..+.....+.+.....++...|. +.-..+. .+++.+..+|+.+....+.+.++|.+.+.+.
T Consensus 350 l~~~~~~-------~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 350 LAFTSDE-------HRLLAVILLTIAIGLSGFNISGF----YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred eeecCCC-------cchHHHHHHHHHHHHcccchhhh----Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 4332211 11221112222222222222211 1222232 4567899999999999999999999999998
Q ss_pred H---hhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 483 R---AVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 483 ~---~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
. ...|+.+|++.+++.+++.++..++
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 3 3468899999999988888665444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-30 Score=250.35 Aligned_cols=391 Identities=16% Similarity=0.149 Sum_probs=254.9
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL 154 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 154 (541)
+++.....++.....+..++.+..|+|-+ ....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 34433334445555677788999999954 68899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhh
Q 009185 155 APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAA 234 (541)
Q Consensus 155 a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~ 234 (541)
++|...++.+..+.|+|.|... .....++|..|.|.|....++.....-....+++.++..+. .+.+|||.|++.+
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~---~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA---AHSGWRWIFYIFI 203 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc---cCCCcchHHHHHH
Confidence 9999999999999999987665 45666899999999998887777666666667788877766 5679999999987
Q ss_pred HHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhc-cCCcCCcchh-------
Q 009185 235 LPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAAS-SNNWQGQGVW------- 306 (541)
Q Consensus 235 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------- 306 (541)
+...+.++..+++..+|++...++++...++.+++.. --..-.........+..+..... ..+|++....
T Consensus 204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD--~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~ 281 (599)
T PF06609_consen 204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELD--WIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGF 281 (599)
T ss_pred HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhh--HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHH
Confidence 7766655433322222322222222111111121110 00000011111112222222233 2344443211
Q ss_pred --------HH------hhcCCCchhHH-HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCch---hhHHHHHHHHHH
Q 009185 307 --------KE------LLLRPSRPLRR-ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKK---QLVGVTVIMGIA 368 (541)
Q Consensus 307 --------~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 368 (541)
.+ ....|.+.+++ |.+...++..+.....++....+.|.........+.. ..+....+.+++
T Consensus 282 ~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg 361 (599)
T PF06609_consen 282 VLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG 361 (599)
T ss_pred HHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH
Confidence 11 12233456665 5666666676667777777777778877766655442 455577788888
Q ss_pred HHHHHHHHHHHHhhcCC-chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeee
Q 009185 369 KTSFVLISALYLDHFGR-RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYS 447 (541)
Q Consensus 369 ~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (541)
..++.++.|.+..+++| |+.++++..++.+++.+++..... + ...+ +...++..+..+. ........+
T Consensus 362 ~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~----n-~~~~--i~~~~l~g~giG~----~~~~~~~~~ 430 (599)
T PF06609_consen 362 SCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPD----N-KNAA--IAFLVLAGFGIGG----ILVPAIVIA 430 (599)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCC----C-cchH--HHHHHHHHHhHHH----HHHHHHHee
Confidence 99999999999999887 455567766666555555433221 1 1111 1122222222222 222334555
Q ss_pred cccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009185 448 SEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR 483 (541)
Q Consensus 448 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (541)
.-..|++.-|++.|+..+++.+|+.++..++..+..
T Consensus 431 ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 431 QLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred EeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 667799999999999999999999999988876654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=257.94 Aligned_cols=370 Identities=14% Similarity=0.072 Sum_probs=258.3
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-----hhHHH-HHHHHHHHHHHHHHHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-----GRRYT-IVLAAATFLLGALLMG 153 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~ 153 (541)
+..++.....++.+|...++.|.+.++++.+ +.....+ ++.+++|+++||+ ||||. +..+.+..+++.++++
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a 99 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 4455566678889999999999999999997 4444444 6899999999999 99885 6688888888888887
Q ss_pred hc---ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCC-cchhHHH
Q 009185 154 LA---PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPE-HINWRLM 229 (541)
Q Consensus 154 ~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~~gwr~~ 229 (541)
+. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++. + ..|||..
T Consensus 100 ~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~---~~~~GWr~~ 176 (491)
T PRK11010 100 FLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA---DRYLGWQGM 176 (491)
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccCHHHH
Confidence 75 478899999999999999999999999999999999999999999999999999999999998 5 4699999
Q ss_pred HHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 230 LGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 230 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
|++.++..++..+..+++||+++.. +++++.. +.. ...+++.
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~-------------~~~----------------------~~~l~~~ 218 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPTDTI---PVPKTLE-------------QAV----------------------VAPLRDF 218 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccc---ccccchh-------------hhH----------------------HHHHHHH
Confidence 9998877777666666678865310 0000000 000 0011222
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhcCCchH
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVT-VIMGIAKTSFVLISALYLDHFGRRPL 388 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~ 388 (541)
++ ++..+...+..++..........+.+.|+.+..+.+....+... ....++.+++.+++|++.||+++|+.
T Consensus 219 ~~-------~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~ 291 (491)
T PRK11010 219 FG-------RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA 291 (491)
T ss_pred Hc-------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 21 12222222222333344444455667777655555667777565 35567999999999999999999887
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHH
Q 009185 389 LMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNR 468 (541)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 468 (541)
+.++.++.++...++....... .+.+.......+..+..++.. +...++..+..+++.+++..|+.+....
T Consensus 292 l~i~~~l~~l~~l~~~~l~~~~-----~~~~~l~~~~~l~~~~~g~~~----~~~~a~~~~l~~~~~~~t~~gl~~s~~~ 362 (491)
T PRK11010 292 LMIFGILQGVSNAGYWLLSITD-----KNLYSMGAAVFFENLCGGMGT----AAFVALLMTLCNKSFSATQFALLSALSA 362 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 7766655555443332211110 011111111111111122222 2335666788888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 469 LVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 469 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
+|+.+++++.|.+.+..||...|.+.+++++++.+.....
T Consensus 363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888887776665443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-30 Score=247.89 Aligned_cols=358 Identities=13% Similarity=0.111 Sum_probs=236.9
Q ss_pred hhhhcccchhhhhHH-HHhhhcCCChhHHHHHHHHHHH-HHHHHHhhhhhhhccchhHHHH-HHHHHHHHHHHHHHHhcc
Q 009185 80 ILLGYDIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNV-CSLIGSLAAGKTSDCIGRRYTI-VLAAATFLLGALLMGLAP 156 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~a~ 156 (541)
++..+......|.+| ++.+++|++++++|++.+...+ ++.++.+++++ +||+||||.+ ..+.++.+++..+.++++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555677776 5788999999999999876655 66666655665 9999998875 566677778888889999
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCccccch--hhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhh
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRG--FLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAA 234 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~ 234 (541)
+++.+++.+.+.|...+...|...+++.|+.++++|. ...++.+.+.++|.++||++++.+. ++.|||+.|++.+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~---~~~gw~~~f~~~~ 180 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA---MGFSFTVMYLSAA 180 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhcChHHHHHHHH
Confidence 9998876655554445567888888888887766553 4457888899999999999999998 7789999999987
Q ss_pred HHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCC
Q 009185 235 LPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRP 313 (541)
Q Consensus 235 ~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (541)
+..++..+. .+++||+++ +++.++ + +. + ..+ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~----~~~~~~--~---~~------------------------------~---~~~---~-- 213 (393)
T PRK15011 181 VAFIVCGVMVWLFLPSMRK----ELPLAT--G---TL------------------------------E---APR---R-- 213 (393)
T ss_pred HHHHHHHHHHHhhcCccCC----CCcccc--c---cc------------------------------c---ccc---c--
Confidence 776665544 455777642 000000 0 00 0 000 0
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhH
Q 009185 314 SRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 393 (541)
.. +..+......+...........+.|.|+++..+.+....+.+.....++.+++.++.|+++||++||+.+..+.
T Consensus 214 --~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~ 289 (393)
T PRK15011 214 --NR--RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAA 289 (393)
T ss_pred --cc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 00 00111111112222334455567888887766666666776666767788889999999999999998877665
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
....+.+..+..... .+.......+..+..+... +....+..|..|++ ++++.++.+...++|..+
T Consensus 290 ~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~~~g~~~----~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 290 VAGVCFYAGMLMAHS---------PAILLGLQLLNAIYIGILG----GIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWII 355 (393)
T ss_pred HHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHH
Confidence 544444333222111 1111111111111222211 22234567887865 999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009185 474 VAMSFLSISRAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 474 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
++.+.|.+.+..|++..+.+.+++.+++.+..+
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877777766665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=251.04 Aligned_cols=361 Identities=14% Similarity=0.067 Sum_probs=258.9
Q ss_pred hhhhcccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccH
Q 009185 80 ILLGYDIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF 158 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~ 158 (541)
++.........+.+| ++.+++|++..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.++++++
T Consensus 17 ~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~ 96 (395)
T PRK10054 17 LLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV 96 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH
Confidence 333445555666665 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
+.+++.|++.|.+.+...+...++..|.+|+++|++++++.....++|.+++|.+++.+. . .+||..|++.++..+
T Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 97 TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---M-QSINLPFWLAAICSA 172 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hccCcHHHHHHHHHH
Confidence 999999999998888888888999999999999999999999999999999999999987 3 689999998777766
Q ss_pred HHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchh
Q 009185 239 AVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPL 317 (541)
Q Consensus 239 ~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (541)
+..+ ..+++||+++ +++.++ .+ .. .. .+.+
T Consensus 173 i~~i~~~~~~~~~~~----~~~~~~-~~------------~~-------------------------~~-------~~~~ 203 (395)
T PRK10054 173 FPLVFIQIWVQRSEK----AIATET-GS------------VW-------------------------SP-------SVLL 203 (395)
T ss_pred HHHHHHHHHHhcccc----ccccch-hh------------hh-------------------------hh-------hhhc
Confidence 6544 3344555422 000000 00 00 00 0123
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 318 RRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG--INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
+++.++...+..++..........+.+.++.... ..+....+.......+..+......|++.||.++|+.+..+..+
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~ 283 (395)
T PRK10054 204 QDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLC 283 (395)
T ss_pred cCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHH
Confidence 3444544444444444444444445566654332 22334445566666666677778889999999999988888777
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
..++...+.+.... +. .........+.......|.....+.+..|++.++++.+..+ ...+|.++||
T Consensus 284 ~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp 350 (395)
T PRK10054 284 FVIGLVGFIFSGNS---------LL---LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINP 350 (395)
T ss_pred HHHHHHHHHHcchH---------HH---HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHH
Confidence 77776655442110 11 11122223333333334566677888889999999988765 6778999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009185 476 MSFLSISRAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 476 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
.+.|.+.|..|+...+++.+.+..+..++..
T Consensus 351 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 351 LVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777666665555543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=245.99 Aligned_cols=359 Identities=12% Similarity=0.034 Sum_probs=262.8
Q ss_pred HhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHH----HHHHHHHHHHHHHH
Q 009185 77 TNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTI----VLAAATFLLGALLM 152 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~~~ 152 (541)
+.++...+..+...|.+|.+.+++|.|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 44455566678889999999999999999999999999999999999999999999985433 333222222 344
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
.++++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+. +++|||..|++
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~---~~~g~~~~f~~ 163 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI---GMFDEQNILAI 163 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH---HHcChhHHHHH
Confidence 5678999999999999999998899988887765 578999999999999999999999999998 78899999988
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 233 AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 233 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
..+..++..+.. .++|+++ +++.++..+ . ......+
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~-------~---------------------------~~~~~~~----- 199 (382)
T TIGR00902 164 LTAGLAFMLIGF-LIKPTIP----PKDAIPEDE-------S---------------------------QGDSAFI----- 199 (382)
T ss_pred HHHHHHHHHHHH-HcCCCCC----CCccccccc-------c---------------------------ccchhHH-----
Confidence 655433333333 3333311 000000000 0 0000111
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
+.+++|.++...+..++..........+.|.++++.+ .+....+.......++.+++.++.+++.||+|+|+.+.++
T Consensus 200 --~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g-~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 200 --ALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAG-ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred --HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 2345677777777777777778888889999998854 4666667678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHH-HHHHHH
Q 009185 393 STGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAIS-VNRLVS 471 (541)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~~ 471 (541)
.++..+...++.+.... +. ++......++......+....++.+. |++.++++.++++. ...+|.
T Consensus 277 ~~~~~~~~~~~~~~~~~---------~~----~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~ 342 (382)
T TIGR00902 277 AIACVGRWAIIGAIEAF---------PL----IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI 342 (382)
T ss_pred HHHHHHHHHHHHhHhhH---------HH----HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH
Confidence 99988888777653332 22 22222233333333334556777777 88889999999874 567899
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 472 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
.+++.+.|.+.|..|+ ..|++.+++.+++.++
T Consensus 343 ~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 343 AIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999985 6677777777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=246.40 Aligned_cols=341 Identities=17% Similarity=0.134 Sum_probs=241.5
Q ss_pred hhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHH
Q 009185 81 LLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLF 160 (541)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~ 160 (541)
...+......+.+|.+.+++|.++.+.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.+++.+++|++.
T Consensus 19 ~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (394)
T PRK11652 19 VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV 98 (394)
T ss_pred HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 44455667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHH
Q 009185 161 LMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAV 240 (541)
Q Consensus 161 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~ 240 (541)
+++.|++.|++.+...+....++.|.+++++|+++.++...+..+|..++|.+++.+. +..|||+.|++.++..++.
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT---TLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccChHHHHHHHHHHHHHH
Confidence 9999999999998888888889999999999999999999999999999999999988 6789999999977666554
Q ss_pred HH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHH
Q 009185 241 AF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRR 319 (541)
Q Consensus 241 ~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (541)
.+ ..+++||+++. +++++. . .. .+++. +++
T Consensus 176 ~~~~~~~~~~~~~~----~~~~~~--~-----------~~-------------------------~~~~~-------~~~ 206 (394)
T PRK11652 176 TFSMARWMPETRPA----DARRTR--V-----------LA-------------------------SYRTL-------LSN 206 (394)
T ss_pred HHHHHHhCCccCcc----ccchhH--H-----------HH-------------------------HHHHH-------HcC
Confidence 43 44567776431 000000 0 00 01111 222
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVS 399 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 399 (541)
+.++...+..+........+..+.+.++++..+.+....+.......++.+++..+.+++.||++++.. .......++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~ 284 (394)
T PRK11652 207 RRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLA 284 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 233333333333334444555667778877555566666767777778888888999999998883322 222222222
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
.+.+........ ...+. .....+..++......|....+..|..| +.++++.++.+....+|+.+++.+.+
T Consensus 285 ~~~~~~~~~~~~----~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 285 GLLMWIPGWFGV----MNVWT----LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHHHHhcc----ccHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111100 00111 1222222333333344666677778877 46899999999999999999999988
Q ss_pred HHHHh
Q 009185 480 SISRA 484 (541)
Q Consensus 480 ~~~~~ 484 (541)
.+...
T Consensus 356 ~~~~~ 360 (394)
T PRK11652 356 MLPQT 360 (394)
T ss_pred HccCC
Confidence 77544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=249.84 Aligned_cols=348 Identities=19% Similarity=0.154 Sum_probs=240.1
Q ss_pred HHhhhhhhcccchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 009185 76 STNSILLGYDIGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL 154 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 154 (541)
+++.+..........+..|. +++++|+++.+.+++.+.+.+++++++++.|+++||+|||+.+.++.++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33444555566778999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC-------CCcchh
Q 009185 155 AP-SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL-------PEHINW 226 (541)
Q Consensus 155 a~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~~gw 226 (541)
++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+... .+..+|
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 99999999999999965 4567789999999999999999999987888887777776655420 113589
Q ss_pred HHHHH-hhhHHHH-HHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcc
Q 009185 227 RLMLG-LAALPAI-AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQG 304 (541)
Q Consensus 227 r~~f~-~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (541)
|+.|+ ..++... +..+...+.+|+|+. +++++ +...++ .... ..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~--~~~~-------------------------~~~~ 213 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPG----KPATG-KLSFKG--ARWS-------------------------VGTG 213 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCcc----cccch-hccccc--cccc-------------------------ccch
Confidence 99994 4344433 334444556666531 11000 000000 0000 0000
Q ss_pred hhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 009185 305 VWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG 384 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 384 (541)
..++. .+.++++.++...+..++..........+.|.|+++..+.+....+.+.....+..++++++.|++.||+|
T Consensus 214 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g 289 (366)
T TIGR00886 214 ALGDQ----LKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLG 289 (366)
T ss_pred hHHHH----HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhc
Confidence 00000 12344555666666666666666777888999998876667777777788888999999999999999999
Q ss_pred CchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHH
Q 009185 385 RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAI 464 (541)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 464 (541)
+|+.+..+......+..++.+..... ...+. .+........+.....+..+....+..| +.+|+++|+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~ 359 (366)
T TIGR00886 290 GARKLLMSFLGVAMGAFLVVLGLVSP-----LSLAV----FIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVG 359 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCc-----chHHH----HHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHH
Confidence 98887777666665555544322100 01111 1111111222222223445677778877 57999999999
Q ss_pred HHHHHH
Q 009185 465 SVNRLV 470 (541)
Q Consensus 465 ~~~~~~ 470 (541)
..+++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 888765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=242.97 Aligned_cols=332 Identities=17% Similarity=0.157 Sum_probs=245.0
Q ss_pred cchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 009185 86 IGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGR 165 (541)
Q Consensus 86 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r 165 (541)
....++.+|.+.+++|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+ .+++++.+++.|
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 94 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT 94 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999998888887 789999999999
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc--hhHHHHHhhhHHHHHHHHH
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI--NWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~--gwr~~f~~~~~~~~~~~~~ 243 (541)
++.|++.+...+....++.|+++ ++|+++++++..+.++|..+++.+++.+. +.. +||+.|.+.+++.++...
T Consensus 95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~---~~~~~~w~~~f~~~~~~~~~~~~- 169 (355)
T TIGR00896 95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA---QHSGGHWQQALAWWALPALLALL- 169 (355)
T ss_pred HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHH-
Confidence 99999999888888889999986 58999999999999999999999988886 443 499998876554443322
Q ss_pred HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHH
Q 009185 244 VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIA 323 (541)
Q Consensus 244 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
.++|+.++ +++.+ . ...+... ++.++++.++
T Consensus 170 -~~~~~~~~----~~~~~-----------~--------------------------~~~~~~~-------~~~~~~~~~~ 200 (355)
T TIGR00896 170 -AWIPQVRR----RVAAN-----------Q--------------------------TTTRLTP-------VRIWRSPLAW 200 (355)
T ss_pred -HHhhhhcc----ccCCC-----------C--------------------------CCCCCCC-------chhhcCHhHH
Confidence 22333211 00000 0 0000001 1234455566
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHHhHHHHHHHHHH
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG-RRPLLMLGSTGMAVSLAV 402 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~ 402 (541)
...+..++....++....|+|.++++.+ .+....+...+...++.++++++.|++.||++ ||+.+.++..+.+++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~lp~~~~~~g-~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 279 (355)
T TIGR00896 201 QVTVFFGLQSGLYYSLIGWLPAILISHG-ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG 279 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 5555555566667777889999998864 45666777888999999999999999999995 566666666666666655
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecc-cCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 403 LGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSE-IFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
+.+.... +. .. .....+++.....|...+...+ ..+++.++...++.+...++++.++|.+.|.+
T Consensus 280 ~~~~~~~---------~~---~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 280 LLFAPMH---------GL---WA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHhhhh---------HH---HH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442211 11 11 1223334444444544444443 33456778999999999999999999999999
Q ss_pred HHhhcc
Q 009185 482 SRAVTF 487 (541)
Q Consensus 482 ~~~~g~ 487 (541)
.|..|.
T Consensus 346 ~~~~g~ 351 (355)
T TIGR00896 346 HDISGN 351 (355)
T ss_pred HHHhcc
Confidence 998873
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=246.17 Aligned_cols=372 Identities=11% Similarity=0.095 Sum_probs=251.9
Q ss_pred hhhhcccchh-hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchh-HHHHHHHHHHHHHHHHHHHhccc
Q 009185 80 ILLGYDIGVM-SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGR-RYTIVLAAATFLLGALLMGLAPS 157 (541)
Q Consensus 80 ~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~a~~ 157 (541)
+.+....... +++.+.+.+++|.+..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~ 91 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444445555 555567888899999999999999999999999999999999964 88999999999899999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhh--------hcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHH
Q 009185 158 FLFLMAGRVVSGIGVGYSLMIAPVYTT--------EISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLM 229 (541)
Q Consensus 158 ~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~ 229 (541)
++.+++.|++.|++.+...+...++.. |......|.+..| .+|.+++|++++.+. ...+|+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~---~~~~~~~- 161 (418)
T TIGR00889 92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD---IELSNIQ- 161 (418)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc---ccchhHH-
Confidence 999999999999988777766655532 2222234555555 478888888888775 3445664
Q ss_pred HHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 230 LGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 230 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
|++.++..++..+..+++||+|+. +++++.. .++ .. +...++.
T Consensus 162 f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~---~~~--------~~-----------------------~~~~~~~ 204 (418)
T TIGR00889 162 LYITAGSSALLGVFALTLPDIPVA---KSTAKMS---IKV--------ML-----------------------GLDAFIL 204 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---ccccccC---HHH--------Hh-----------------------hhhHHHH
Confidence 445444444444556678887531 0000000 000 00 0001111
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS-------KKQLVGVTVIMGIAKTSFVLISALYLDH 382 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 382 (541)
++++.++.+.+..++..........+.|.++++.+.++ ....+.......+..+++.+..|++.||
T Consensus 205 -------~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr 277 (418)
T TIGR00889 205 -------FKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR 277 (418)
T ss_pred -------hcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334444444444444445566688887765432 2445667888888999999999999999
Q ss_pred cCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHH
Q 009185 383 FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL 462 (541)
Q Consensus 383 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 462 (541)
+|+|+.+.++.++.+++..++...... .+. ...+++..++.+.......+....++.|.+|++.|+++.|+
T Consensus 278 ~g~r~~l~~~~~~~~v~~~l~~~~~~~--------~~~-~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~ 348 (418)
T TIGR00889 278 FGIKKVMLLSLVAWALRFGFFAYGDPE--------YFG-YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGL 348 (418)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCcc--------hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999988887776666542110 011 11122222223332223335556778999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 463 AI-SVNRLVSGIVAMSFLSISRAV------TFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 463 ~~-~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
.+ ....+|.+++|.+.|.+.+.. ||+..|.+.+++.+++.++.+++.+++++
T Consensus 349 ~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 349 FTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 97 567889999999999999884 47788888888888888888788876644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=222.60 Aligned_cols=365 Identities=13% Similarity=0.092 Sum_probs=289.2
Q ss_pred HHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 74 LASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
+++...++-++......+++|.+++.|+++..|.+++...++.++.+.+++.|++.+|+|+|+-+++|+.++++|+.+..
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444467777888899999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ---hcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC----------
Q 009185 154 ---LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL---------- 220 (541)
Q Consensus 154 ---~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------- 220 (541)
-..+|..++++-++.|.|.+...+.++.++....++++-.+.+++.+..+++|.+++|++++.+...
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 5578999999999999999999999999999999998899999999999999999999999988731
Q ss_pred ------CCcchhHHHHHhhhHHHHHHHHHHhc--CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh
Q 009185 221 ------PEHINWRLMLGLAALPAIAVAFGVIA--MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLG 292 (541)
Q Consensus 221 ------~~~~gwr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (541)
.....||++|...+...++..+.... .|+.+.- ..++.
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~-----~~~~~----------------------------- 222 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA-----APSLG----------------------------- 222 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----ccccc-----------------------------
Confidence 00123888888866666665554443 3443210 00000
Q ss_pred hhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 009185 293 HAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSF 372 (541)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (541)
++++. ...+.+++|.++...+..+++.........|++.|+.+..+.+..++....+....+.++|
T Consensus 223 --------~~~~~------~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vG 288 (422)
T COG0738 223 --------ASGSA------GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVG 288 (422)
T ss_pred --------ccccc------hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 00000 0013567788888899999999999999999999999987778888888999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 373 VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 373 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
++++.++..|+...+.+.+..++..+.++...+.... ..+......++++...+|..++...+..|
T Consensus 289 RFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~--------------v~~~~l~~ig~F~simfPTIfslal~~l~ 354 (422)
T COG0738 289 RFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV--------------VALYALFLIGLFNSIMFPTIFSLALKNLG 354 (422)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh--------------HHHHHHHHHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999999888877766666555555554432 44455556677788888999999999988
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGT 502 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 502 (541)
+. ....|.......+|+++.|++.|.+.|..|....+.....+|.+..
T Consensus 355 -~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 355 -EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred -cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33 3444445566677999999999999999998777765555555544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=241.85 Aligned_cols=368 Identities=15% Similarity=0.121 Sum_probs=230.6
Q ss_pred cccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH---hcc---
Q 009185 84 YDIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG---LAP--- 156 (541)
Q Consensus 84 ~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~a~--- 156 (541)
+......+.+| ++.+++|+++.+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++
T Consensus 24 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (420)
T PRK09528 24 FIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ 103 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666 56667999999999999999999999999999999999999999887766655443221 111
Q ss_pred --cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhh
Q 009185 157 --SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAA 234 (541)
Q Consensus 157 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~ 234 (541)
.+...++++++.|.+.....+....+..+ . .+++++.++......++|.+++|.+++.+. + .+|++.|++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---~-~~~~~~f~~~~ 177 (420)
T PRK09528 104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILF---N-INPQINFWLGS 177 (420)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHH---h-cCchHhHHHHH
Confidence 11112333444444333333333333222 2 346778889989999999999999999987 3 48999999987
Q ss_pred HHHHHHHHHHhcC-CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCC
Q 009185 235 LPAIAVAFGVIAM-PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRP 313 (541)
Q Consensus 235 ~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (541)
++.++..+..+++ +|+++....++ +.+ + +. ++...++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~--~~----------------------------~~~~~~~~~--- 217 (420)
T PRK09528 178 GSALILLVLLFFAKPDAPSTAKVAN---ALG----A--NA----------------------------SAVSLKDAL--- 217 (420)
T ss_pred HHHHHHHHHHhcccccccchhhhcc---chh----c--cc----------------------------ccccHHHHH---
Confidence 7777666555544 33322100000 000 0 00 000011100
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 009185 314 SRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG---INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 390 (541)
..++++.++...+..+.....+.....+.|.|+.+.. +.+....+....+..++.+++.++.|++.||+|+|+.+.
T Consensus 218 -~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 296 (420)
T PRK09528 218 -ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALL 296 (420)
T ss_pred -HHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence 0122333333333222222333333344566655432 233345566777788888999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHH-HHHHHHH
Q 009185 391 LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL-AISVNRL 469 (541)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~ 469 (541)
.+..+.+++..++.+... .+.. .......+.......+....++.|.+|++.+++..+. .++...+
T Consensus 297 ~~~~l~~~~~~l~~~~~~---------~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 363 (420)
T PRK09528 297 LAGTIMAVRIIGSGFATG---------PLEV----SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL 363 (420)
T ss_pred HHHHHHHHHHHHHHhccc---------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence 888877777666654221 1211 1112222222222223344677788899988888766 6777889
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 470 VSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 470 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
|.++++.+.|.+.|..||+..|.+.+++.++..++.+...++
T Consensus 364 g~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 364 GAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998888887777666555544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=236.21 Aligned_cols=354 Identities=13% Similarity=0.074 Sum_probs=245.5
Q ss_pred hhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhH----HHHHHHHHHHHHHHHHHHhcc
Q 009185 81 LLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRR----YTIVLAAATFLLGALLMGLAP 156 (541)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~a~ 156 (541)
......+...|.+|.+.+|+|.|.+++|++.+++.++..++++++|+++||+||| +.+.++..+. .......++
T Consensus 15 ~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (382)
T PRK11128 15 GYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH 92 (382)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 3334567788999989999999999999999999999999999999999999984 3333332222 223344568
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
++|.+++.|++.|++.+...+...+++.++ +++|+++.+......++|.++||++++++. +++|||..|++.++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~---~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV---SWFGEQAILWILTAG 167 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH---HHcChhHHHHHHHHH
Confidence 999999999999999998999888887776 457899999999999999999999999998 788999999887665
Q ss_pred HHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCch
Q 009185 237 AIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRP 316 (541)
Q Consensus 237 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (541)
.++..+..++.||+++ +++.++. . .+....+++ .
T Consensus 168 ~~~~~~~~~~~~~~~~----~~~~~~~-------~----------------------------~~~~~~~~~-------i 201 (382)
T PRK11128 168 VASMLLGQLLRPTIMP----QGESRQQ-------E----------------------------SAGWPAWKA-------L 201 (382)
T ss_pred HHHHHHHHHccCCCCC----ccccccc-------c----------------------------ccccchHHH-------H
Confidence 5544444444554321 0000000 0 000011222 3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
+++|.++...+..++..........+.|.|+++.+. +....+.......++.++..++.+++.||+++|+.+..+..+.
T Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~ 280 (382)
T PRK11128 202 LKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG 280 (382)
T ss_pred HcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 445666666555555555566666777888877554 5556676777888899999999999999999999988888877
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH-HHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV-NRLVSGIVA 475 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~ 475 (541)
+++.+++..... .|.. .+..+..++......+....+..+. +++++++..++.+.. ..+|..++|
T Consensus 281 ~~~~~~~~~~~~---------~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~ 346 (382)
T PRK11128 281 VVRWGLMGSTTA---------LPWL----IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT 346 (382)
T ss_pred HHHHHHHHhhhh---------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777665544221 1222 2222222222222234445666665 555578888888644 556678999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 009185 476 MSFLSISRAVTFGGMFFILSGITAVGTV 503 (541)
Q Consensus 476 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 503 (541)
.+.|.+.|..|+ ..++..+++.+++.+
T Consensus 347 ~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 347 VLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 999999999886 456655555544433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=252.31 Aligned_cols=418 Identities=15% Similarity=0.131 Sum_probs=291.5
Q ss_pred hHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHH
Q 009185 67 YALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFL 146 (541)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 146 (541)
|.|.+++...+......-....++.+.+.++++++.+.++++|+.++......+..|+.+.+.||+|.|.+.++|.++.+
T Consensus 43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence 34444344433333322234455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHH-HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 147 LGALLMGLAPSFLFLMAG-RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 147 i~~~~~~~a~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
+|.++.+|++++|++++. -++.|+|.|..+.....++..+| +|+|+.+.|+...+.++|..+-|.+...+. +.+|
T Consensus 123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~---~~~G 198 (509)
T KOG2504|consen 123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL---SKYG 198 (509)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH---HHhC
Confidence 999999999999988877 79999999999999999999888 569999999999999999999999999988 8999
Q ss_pred hHHHHHhhhHHHHHHHHHHh-cCCCChHHHHhcCChHHHHHHHHHhcCChh-hHHHHHHH-----HHHHHHhh-hhhhcc
Q 009185 226 WRLMLGLAALPAIAVAFGVI-AMPESPRWLVMKGRFADAKQALIKTSDSVE-EAEFRLNE-----MTRTIADL-GHAASS 297 (541)
Q Consensus 226 wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~-~~~~~~ 297 (541)
||+.+++.+.+.+-..+... .-|.++... ++ .++..+......+... .......+ ........ ..+...
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLRPLSPPKK--PN-EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGP 275 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--ch-hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCC
Confidence 99999987666655544333 334332210 00 0000000000000000 00000000 00000000 000000
Q ss_pred CCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009185 298 NNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISA 377 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 377 (541)
.+++.....+.+...+...++++.++.+.+...+...++.....++|.+..+.+... ..+..+.++.++..++++++.|
T Consensus 276 ~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 276 DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhh
Confidence 001100111111111235678899999999999999999999999999999776654 4555599999999999999999
Q ss_pred HHHhhcCCc--hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh
Q 009185 378 LYLDHFGRR--PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF 455 (541)
Q Consensus 378 ~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 455 (541)
++.|+...+ ....++.++.+++.+.+.+...+ ..+...+.+.++.......+...++.|+.+.+.
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~-------------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLARLFLPFATTY-------------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK 421 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence 999998843 34445555555555444443322 134444555555555555566667889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHH
Q 009185 456 RAQGSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 456 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 505 (541)
-..+.|+...+..++..+||++.|.+.|..+ |...|...+.+.+++..+.
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 9999999999999999999999999999888 7777777777766666554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=270.78 Aligned_cols=381 Identities=11% Similarity=-0.032 Sum_probs=258.2
Q ss_pred HHHhhhhhhcccchhhhhHH-HHhhhcCCCh-hHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH---HHHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAIL-YIRDNLNITS-IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVL---AAATFLLGA 149 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~ 149 (541)
.+++.+.+++....+..+.. .+..+.+.+. ...++..+++.+.++++++++|+++||+|||+++.. +.++..+..
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~ 99 (1140)
T PRK06814 20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALA 99 (1140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444343333 4545555443 457888999999999999999999999999997533 333333333
Q ss_pred HHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHH
Q 009185 150 LLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLM 229 (541)
Q Consensus 150 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~ 229 (541)
+.+...+++++++++|+++|++.+...|+..+++.+++++++|++++|+.+++.++|.++||++++++. ...+|++.
T Consensus 100 ~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~---~~~~~~~~ 176 (1140)
T PRK06814 100 IYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT---ISGNFVIL 176 (1140)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH---hccccHHH
Confidence 444445899999999999999999999999999999999999999999999999999999999999998 77899999
Q ss_pred HHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 230 LGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 230 f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
|+..++..++.++..+++|+++.. +...+..... ..+... .++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------~~~~~~------------------~~~-- 219 (1140)
T PRK06814 177 VALLMGIAVLGWLASLFIPKTGNA---APDLKIDRNI--------------IRSTIT------------------LLK-- 219 (1140)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC---CCCCeeccch--------------HHHHHH------------------HHH--
Confidence 966666666666666667765420 0000000000 000000 011
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLL 389 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 389 (541)
...+++.++...+..++.......+..++|.|+++..+.+....+.+.+..+++.+++.++.|++.|+..+++.+
T Consensus 220 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~ 294 (1140)
T PRK06814 220 -----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV 294 (1140)
T ss_pred -----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence 123455666666666666666677778999999987777778888888999999999999999999888776666
Q ss_pred HHhHHHHHHHHHHHHHHhhhcC--CCC---------CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhh
Q 009185 390 MLGSTGMAVSLAVLGLGSKYLD--QSD---------IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQ 458 (541)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 458 (541)
..+.++.+++.+.+.+...... ... ....|. +.+..++.+++.....+...+++.+..|++.+|+
T Consensus 295 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 295 PIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR----ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred hHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH----HHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 6555555554444433200000 000 011121 2222333334444444556788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHH
Q 009185 459 GSSLAISVNRLVSGIVAMSFLSISRA-VTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 459 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 504 (541)
++|+.+++..++..+++.+.+.+.+. .++...+++.+.+.++..++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988743 34444555444443443333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=233.19 Aligned_cols=368 Identities=14% Similarity=0.062 Sum_probs=249.5
Q ss_pred hhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-----hhHH-HHHHHHHHHHHHHHHH
Q 009185 79 SILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-----GRRY-TIVLAAATFLLGALLM 152 (541)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~~~~ 152 (541)
++.+++........+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||| ++..+.++.+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 45667777788899998888999999999999777665 59999999999999 8765 7888899998888888
Q ss_pred Hhc---ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc-chhHH
Q 009185 153 GLA---PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-INWRL 228 (541)
Q Consensus 153 ~~a---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-~gwr~ 228 (541)
++. .+++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. +. .|||.
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~---~~~~gw~~ 162 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA---DRVLGWGN 162 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH---hcccCHHH
Confidence 887 357888888888888888899999999999999999999999999999999999999998887 54 59999
Q ss_pred HHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHH
Q 009185 229 MLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKE 308 (541)
Q Consensus 229 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (541)
.|++.++..++..+..+++||+++. +++.++..+ + .. ..+++
T Consensus 163 ~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~----------~-------~~------------------~~~~~ 204 (402)
T PRK11902 163 TYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE----------A-------VV------------------GPLRD 204 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH----------H-------HH------------------HHHHH
Confidence 9999777766665556667776431 000000000 0 00 01111
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcCCch
Q 009185 309 LLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIM-GIAKTSFVLISALYLDHFGRRP 387 (541)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~ 387 (541)
.+++|.++.+.+..++..........+.+.++.+..+.+....+...... .++.+++.++++++.||+++|+
T Consensus 205 -------l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 205 -------FFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred -------HHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 23344444433333333322222222334445444445666666555444 4568899999999999999998
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHH
Q 009185 388 LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVN 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 467 (541)
.+..+..+..+..+.+....... ...+.......+..+..++......+....++.+.+|.+. .++.+...
T Consensus 278 ~l~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 348 (402)
T PRK11902 278 SLMLFGVLQAVSNLGYWVLAVTP-----KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALA 348 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHH
Confidence 87766666555544332221110 0112212221122233334443444555667777777554 45555666
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009185 468 RLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 505 (541)
.++..+++.+.|.+.|..|+...|.+.+.+++++.++.
T Consensus 349 ~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 349 SVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 67777777899999999999988888887777766554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=231.20 Aligned_cols=401 Identities=11% Similarity=0.044 Sum_probs=248.7
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAAATFLLGALLMGLAPSFLF-LMAGRV 166 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~~~~~-l~~~r~ 166 (541)
...+..++.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++.+.+++++++++++++.+... ++++|+
T Consensus 34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~ 113 (489)
T PRK10207 34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 3445557889999999999999999998888999999999999 99999999999999999999999877554 558899
Q ss_pred HHhhcccccccchhhhhhhcCccc--cchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH
Q 009185 167 VSGIGVGYSLMIAPVYTTEISPAM--TRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 167 l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~ 244 (541)
++|+|.|...|...+++.|.+|++ +|++++++++.+.++|.++||.+++++. ++.|||+.|++.++..++.++.+
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~---~~~gw~~~F~i~~i~~~~~~~~~ 190 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA---DKFGYSVTYNLCGAGLIIALLVY 190 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH---HhhChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 4578999999999999999999999999 78899999998655433333333
Q ss_pred hcCCCChHHHHhcC--ChHHHHHHHH----------Hh--cCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 245 IAMPESPRWLVMKG--RFADAKQALI----------KT--SDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 245 ~~~~e~p~~~~~~~--~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
++.++..+....++ ++.+...... .. ..+...................- +.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f------------~~~~~ 258 (489)
T PRK10207 191 FACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF------------FREAF 258 (489)
T ss_pred HHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH------------HHHHh
Confidence 33332211000000 0000000000 00 00000000000000000000000 00000
Q ss_pred cCCCchhHHHHHHHHHHH--HHHHhhhhhhHhhccHHHHhh-cCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 009185 311 LRPSRPLRRILIAAIGVN--FFMQASGNDAVVYYSPEVFKD-AGIN---SKKQLVGVTVIMGIAKTSFVLISALYLDHFG 384 (541)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 384 (541)
+ ..+..|+|.+....+. .......+....+.++.+.++ .... -......+.....+..++..++.+++.||++
T Consensus 259 ~-~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~ 337 (489)
T PRK10207 259 K-LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLG 337 (489)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 0 0123444544433322 333334444444556666653 2221 0111222455566677788888999999999
Q ss_pred CchH-------HHHhHHHHHHHHHHHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhh
Q 009185 385 RRPL-------LMLGSTGMAVSLAVLGLGSK-YLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFR 456 (541)
Q Consensus 385 ~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 456 (541)
+|+. +.+|.++.+++++.+..... ........+.|. ++...++.+.......|....++.+..|++.+
T Consensus 338 ~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~----~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~ 413 (489)
T PRK10207 338 SKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWF----IVLVYLFQSLGELFISALGLAMIAALVPQHLM 413 (489)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH----HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence 8863 66777777777655432211 111111111222 22333344444444556777888888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH----------hhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 457 AQGSSLAISVNRLVSGIVAMSFLSISR----------AVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 457 ~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
+.++|+.+...++|+.++..+...... ...+.+.|...++.++++.++.++..
T Consensus 414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 414 GFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887764421 11244566666666666666554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=229.88 Aligned_cols=368 Identities=14% Similarity=0.112 Sum_probs=242.8
Q ss_pred hhhhcccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH---Hhc
Q 009185 80 ILLGYDIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM---GLA 155 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a 155 (541)
++.........|.+| ++.+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 91 (396)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFG 91 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556777777 4566799999999999999999999999999999999999999998877766544332 112
Q ss_pred -----ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHH
Q 009185 156 -----PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLML 230 (541)
Q Consensus 156 -----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f 230 (541)
+.+..+++.|++.|++.+...+....+..|.. ++++...+......++|.++||.+++.+. ..+||++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~----~~~~~~~f 165 (396)
T TIGR00882 92 PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILF----SIDPQIVF 165 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhh----ccCchHHH
Confidence 22345567789999998888888877776643 34456778888888999999999999886 35999999
Q ss_pred HhhhHHHHHHHHHHhc-CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 231 GLAALPAIAVAFGVIA-MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
++.+++.++..+..+. .||+|+. ++.+++. +.. +...+.+..++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~--------------------------~~~~~~~~~~~~ 211 (396)
T TIGR00882 166 WLGSGFALILMLLLMFAKPKAPSS----ATVANAL----GAN--------------------------ASAFSLKLALEL 211 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchh----hhhhccc----ccc--------------------------cCCCCHHHHHHH
Confidence 9987777766554444 4444321 0000000 000 000000112222
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG---INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR 386 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 386 (541)
++++.++...+..+.....+.....+.+.|+++.. +.+....+.......+...++.+..+++.||+|+|
T Consensus 212 -------l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~ 284 (396)
T TIGR00882 212 -------FRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK 284 (396)
T ss_pred -------HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23333444334444344444445456677766553 22334456677777888888999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHH-HHH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL-AIS 465 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~ 465 (541)
+.+.++..+.++...+...... .+.. ....+..+............+..+..|++.++++.+. .+.
T Consensus 285 ~~l~~~~~l~~l~~~~~~~~~~---------~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~ 351 (396)
T TIGR00882 285 NALLIAGTIMSVRIIGSSFATT---------ALEV----VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQF 351 (396)
T ss_pred hhHHHHHHHHHHHHHHHHhcCC---------hHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHH
Confidence 9998888877776655443211 1211 1112222222211112223455666777777777766 678
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
...+|+.+++.+.|.+.|..|+...|.+.+++.++..++..+
T Consensus 352 ~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 352 AKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988888777766543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=263.72 Aligned_cols=364 Identities=14% Similarity=-0.018 Sum_probs=247.1
Q ss_pred chhhhhHHHHhhhcCCCh--hHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH---HhcccHHHH
Q 009185 87 GVMSGAILYIRDNLNITS--IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM---GLAPSFLFL 161 (541)
Q Consensus 87 ~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a~~~~~l 161 (541)
.....+.+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ..+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (1146)
T PRK08633 27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA 106 (1146)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 334555566667777654 457999999999999999999999999999999999987766555544 345789999
Q ss_pred HHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCC------CcchhHHHHHhhhH
Q 009185 162 MAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLP------EHINWRLMLGLAAL 235 (541)
Q Consensus 162 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~~gwr~~f~~~~~ 235 (541)
+++|+++|++.+...++..+++.|++|+++|++++++..++..+|.++|+++++++.... ...+|++.+.+.++
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL 186 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987210 01245555544333
Q ss_pred -HHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 236 -PAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 236 -~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
..++.++..+.+||+|.....+.+.+ .... ..+.. ..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~------------------~~~~~------ 227 (1146)
T PRK08633 187 AVAVLGLIFAYRLPKVPAAAPEVFDKK----------KYLF-----PKLLW------------------RNLKL------ 227 (1146)
T ss_pred HHHHHHHHHHhcCcCCCCCCccccccc----------cccc-----HHHHH------------------HHHHH------
Confidence 33344445566787754211000000 0000 00000 00111
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKK-QLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 393 (541)
.++++.++...+..++..........++|.|+.+..+.+.. ..+.+.....++.+++.++.+++.||+++++.+.++.
T Consensus 228 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 228 -LRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred -HhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 22334445444444545555556677788888776666666 7777888899999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
++.+++.+++.+.... + .+++..++.+++.....+...+++.+..|++.||+++|+.+++.+++..+
T Consensus 307 ~~~~~~~~~~~~~~~~---------~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 307 LGLALSLFLLPTAPSL---------A----SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred HHHHHHHHHHHHhhhH---------H----HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH
Confidence 7777666665543211 1 22223333334444444555678889999999999999999999998877
Q ss_pred HHHHHHHHHHhhc--chhHHHHHHHHHHHHHHH
Q 009185 474 VAMSFLSISRAVT--FGGMFFILSGITAVGTVF 504 (541)
Q Consensus 474 ~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 504 (541)
++.+.+.+.. .+ +...+++.+.+.++..++
T Consensus 374 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 374 FLALTTLFSG-LGLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHH
Confidence 7766665443 33 333444444444443333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=227.78 Aligned_cols=414 Identities=12% Similarity=0.051 Sum_probs=265.2
Q ss_pred hhhhhhcccchhhhhHHH-Hhhh--cCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHH
Q 009185 78 NSILLGYDIGVMSGAILY-IRDN--LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
..+...+......+.+|. +.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+
T Consensus 18 ~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666664 4555 99999999999999999999999999999999 8999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhhcccccccchhhhhhhcCcccc---chhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHH
Q 009185 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMT---RGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLML 230 (541)
Q Consensus 154 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f 230 (541)
++++++.++++|++.|+|.|...+...++++|++|+++ |+.++++++.+.++|.++||.+++++. ++.|||+.|
T Consensus 98 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~---~~~g~~~~f 174 (475)
T TIGR00924 98 MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA---ENYGYHVGF 174 (475)
T ss_pred hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH---HhcChHHHH
Confidence 99999999999999999999999999999999998754 888999999999999999999999998 778999999
Q ss_pred HhhhHHHHHHHHHHhcCCCChHHHHhcCC--hHHHHHHHHHh---------------cCChhhHHHHHHH---HHHHHHh
Q 009185 231 GLAALPAIAVAFGVIAMPESPRWLVMKGR--FADAKQALIKT---------------SDSVEEAEFRLNE---MTRTIAD 290 (541)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~~~~~~~---~~~~~~~ 290 (541)
++.++..++..+.+++.++..+....+++ .++..+..... ............. ......
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 253 (475)
T TIGR00924 175 NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIF- 253 (475)
T ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-
Confidence 98776555444443333321100000000 00000000000 0000000000000 000000
Q ss_pred hhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCC----chhhHHHHHHHH
Q 009185 291 LGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS----KKQLVGVTVIMG 366 (541)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 366 (541)
..... .+. + ..+. ...+...+..+.+........+....+.++.+.++....+ ....+.+..+..
T Consensus 254 ~~~~~-~~~---~--~~~~-----~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~ 322 (475)
T TIGR00924 254 FFRLA-FKP---R--LDAV-----ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNP 322 (475)
T ss_pred HHHHH-Hhc---c--CCHH-----HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhH
Confidence 00000 000 0 0000 0112222333444444445555555555566655432211 112445777777
Q ss_pred HHHHHHHHHHHHHHhhcCC-----chHH--HHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccc
Q 009185 367 IAKTSFVLISALYLDHFGR-----RPLL--MLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGL 439 (541)
Q Consensus 367 ~~~~~~~~~~g~l~d~~g~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (541)
+..++..++..++..|.+| +... .+|.++.++++..+.+.....+.....+.| .++...++.+......
T Consensus 323 ~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~----~~i~~~~~~~~ge~~~ 398 (475)
T TIGR00924 323 FWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPW----FMVLIYLFQTLGELMI 398 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHH----HHHHHHHHHHHHHHHH
Confidence 7777777775554334333 3333 677888888877776543222111111222 3334444555555566
Q ss_pred cccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 440 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
.|...++..+..|++.||+++|+......+|..+++.+.....+..++...+...+.++++..++.++..|
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999998887777777777777777777777666655444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=247.07 Aligned_cols=388 Identities=12% Similarity=0.120 Sum_probs=272.1
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
+.+++..+...+..+..++.++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33344556666777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc---------------------------------------------------cHHHHHHHHHHHhhcccccccchhh
Q 009185 153 GLAP---------------------------------------------------SFLFLMAGRVVSGIGVGYSLMIAPV 181 (541)
Q Consensus 153 ~~a~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~ 181 (541)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8753 2567889999999999999999999
Q ss_pred hhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCC------------------cc-hhHHHHHhhhHHHHHHHH
Q 009185 182 YTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPE------------------HI-NWRLMLGLAALPAIAVAF 242 (541)
Q Consensus 182 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~------------------~~-gwr~~f~~~~~~~~~~~~ 242 (541)
++.|++|+++|+++++++..+..+|.++|+++++++.+... +. +||..|++.++++++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998874211 01 278888888887777766
Q ss_pred HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHH
Q 009185 243 GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILI 322 (541)
Q Consensus 243 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
.++++|++.+....+.+.+..++. ......+. .........++..+..++.+++|.+
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~Ll~n~~f 332 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETE--KLEKSEDK---------------------SRKKNSDITKDFPKIIKRLLCNPIY 332 (633)
T ss_pred HHHhCccccCCcccccchhhhhhh--cccccccc---------------------cchhhhhhHHHHHHHHHHHHcCcHH
Confidence 666677642200000000000000 00000000 0000000112222222346778889
Q ss_pred HHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHhhcCC--chHHHHhHHHHHHH
Q 009185 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGI-AKTSFVLISALYLDHFGR--RPLLMLGSTGMAVS 399 (541)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~ 399 (541)
+...+..++.....+.+..|+|.|+++..+.++..++.+..+..+ +.+++.+++|+++||++. |+.+.++.++..++
T Consensus 333 ~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 333 MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 999899888999999999999999998888888888867666665 568999999999999984 46666666666655
Q ss_pred HHHHHHHh--------------hhc--------C----------CC---------------------------CCc----
Q 009185 400 LAVLGLGS--------------KYL--------D----------QS---------------------------DIK---- 416 (541)
Q Consensus 400 ~~~~~~~~--------------~~~--------~----------~~---------------------------~~~---- 416 (541)
.++..... .+. . .. ...
T Consensus 413 ~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~ 492 (633)
T TIGR00805 413 YLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYT 492 (633)
T ss_pred HHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceec
Confidence 44422100 000 0 00 000
Q ss_pred --------------------h-hHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHH-HHHHH
Q 009185 417 --------------------P-AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRL-VSGIV 474 (541)
Q Consensus 417 --------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~ 474 (541)
. .......+++.++...+......|.. .++...+|+++|+.+.|+...+.++ |..-+
T Consensus 493 ~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rllg~iP~ 571 (633)
T TIGR00805 493 NCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRVFATIPA 571 (633)
T ss_pred ccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHHHHhcCCCh
Confidence 0 01112222233333333344444554 5566778999999999999988776 55779
Q ss_pred HHHHHHHHHh
Q 009185 475 AMSFLSISRA 484 (541)
Q Consensus 475 ~~~~~~~~~~ 484 (541)
|.++|.++|.
T Consensus 572 pi~fG~~iD~ 581 (633)
T TIGR00805 572 PILFGLLIDV 581 (633)
T ss_pred hHHHhhhhhc
Confidence 9999999984
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=230.30 Aligned_cols=369 Identities=14% Similarity=0.096 Sum_probs=270.3
Q ss_pred HhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-
Q 009185 77 TNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA- 155 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a- 155 (541)
++.++..+...+....++.+..+..-|+...+++..+..+...+.++++|.++||+.|||+++.+-++.++..++.++.
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~ 96 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLA 96 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556677777777777899999999999999999999999999999999999999998877665554432
Q ss_pred ----ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHH
Q 009185 156 ----PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG 231 (541)
Q Consensus 156 ----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~ 231 (541)
.+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.++..++..++||.++|.+. ...|-.+.|+
T Consensus 97 ~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv---a~~G~~~~f~ 173 (524)
T PF05977_consen 97 FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV---AFFGAAAAFL 173 (524)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999998 6778889998
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhc
Q 009185 232 LAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLL 311 (541)
Q Consensus 232 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (541)
+.++..++.++....++..++ +++ ...++. ..++.+ .++-
T Consensus 174 inalsfl~~i~~l~~~~~~~~----~~~-~~~e~~--------------~~~l~~------------------G~ry--- 213 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPPP----PSS-LPRERF--------------FSALRE------------------GLRY--- 213 (524)
T ss_pred HHHHHHHHHHHHHHHcccccc----ccc-cchhhh--------------hhhHHH------------------HHHH---
Confidence 877665555444443332211 000 000000 000000 0110
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 009185 312 RPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391 (541)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 391 (541)
...++.+....+..++.......+...+|.+.++..+.++...|++....+++.++|.++.+++.+|+++++.+..
T Consensus 214 ----v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~ 289 (524)
T PF05977_consen 214 ----VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLL 289 (524)
T ss_pred ----HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHH
Confidence 1112222222222222333334445568999888777788888989999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHH
Q 009185 392 GSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471 (541)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 471 (541)
+.++.+++.+.+++.... | ......+..|+..........+...+..|++.||++++++.+....+.
T Consensus 290 ~~~~~a~~~~~lal~~~~---------~----~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~ 356 (524)
T PF05977_consen 290 ASLLFALALLLLALSPSF---------W----LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM 356 (524)
T ss_pred HHHHHHHHHHHHhcchHH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence 888888777777664332 2 222233333444444445556778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009185 472 GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 472 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 505 (541)
.+|..+.|.+.+..|....+.+.++..+++.++.
T Consensus 357 ~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 357 PLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888776666555555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=228.15 Aligned_cols=370 Identities=12% Similarity=0.090 Sum_probs=236.6
Q ss_pred hhhhhcccchhhhhHHHHhhhcCCChhH-HHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhccc
Q 009185 79 SILLGYDIGVMSGAILYIRDNLNITSIQ-VEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPS 157 (541)
Q Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~ 157 (541)
.|+..+ +...+.+.|++.+|+|++.+| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.+++++
T Consensus 36 GF~~e~-R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S 114 (511)
T TIGR00806 36 GFMAQF-RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS 114 (511)
T ss_pred HHHHHh-hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 778889999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh---hh
Q 009185 158 FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL---AA 234 (541)
Q Consensus 158 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~---~~ 234 (541)
+..+.+.|++.|++.|+.. +...++..|+|+++|+++.++...+..+|.++++++++.+. .+|||+.+.+ ..
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl 189 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISL 189 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999954 6799986654 22
Q ss_pred HHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 235 LPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 235 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
....+.++..+++|..++.+..+++.+.......+.....++... ......+.......+.+.....
T Consensus 190 ~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~ 256 (511)
T TIGR00806 190 VFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGG-------------KLEDYLGTCRDSFLVRMLSELV 256 (511)
T ss_pred HHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCcc-------------ccchhhhhhhhHHHHHHHHHHH
Confidence 333344556678886666554443221100000000000000000 0000000000011122222222
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGST 394 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 394 (541)
..++++.+....+.+.+...+++-+..|....-++........-|..-.+..+.+.+..+..|++-.++.+..-+.++..
T Consensus 257 ~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~ 336 (511)
T TIGR00806 257 TIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVV 336 (511)
T ss_pred HHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 34555666666666666667777777777766665544222233446667777788888899998655533222333322
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHH
Q 009185 395 GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIV 474 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~ 474 (541)
...-+.+++..... ..-|... ....++.+.+... .++...-+++....+.-|...|+.+++.-+-..+.
T Consensus 337 s~~~~gll~~m~~t-------~~Iw~~Y---~~yvlf~~~y~fl-itia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtil 405 (511)
T TIGR00806 337 SAIQAGLVFWMSQS-------HDIWVLY---VTYVLFRGIYQFL-VPIATFQIASSLSKELCALVFGINTFVATALKTII 405 (511)
T ss_pred HHHHHHHhhhhhcc-------cchHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHhcccceEEEEecHHHHHHHHHHhe
Confidence 22222222222111 1123222 2222222222221 23444455555566667888888887776665555
Q ss_pred HHHH
Q 009185 475 AMSF 478 (541)
Q Consensus 475 ~~~~ 478 (541)
..++
T Consensus 406 T~iV 409 (511)
T TIGR00806 406 TAVV 409 (511)
T ss_pred EEEE
Confidence 4433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=205.16 Aligned_cols=356 Identities=19% Similarity=0.183 Sum_probs=276.6
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFL 159 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~ 159 (541)
+.---..+.++|+++++++|+|+|.+.+|++.++..+..++.+++..+++.|+|.++.+..++++.++|.++-... +.+
T Consensus 22 ~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~ 100 (395)
T COG2807 22 FNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLP 100 (395)
T ss_pred hccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHH
Confidence 4334456778999999999999999999999999999999999999999999999999999999999999999987 888
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc-hhHHHHHhhhHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI-NWRLMLGLAALPAI 238 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~-gwr~~f~~~~~~~~ 238 (541)
.++.+-.+.|.|.+......+.++.+.||+ +-+..+++|.+..++|.++++.+...+. ++. |||....+-+++++
T Consensus 101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla---~~~~gW~~aL~~WAl~al 176 (395)
T COG2807 101 LLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLA---QHSGGWRGALGFWALLAL 176 (395)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHH---HhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 7799999999999999999999998888 555 79999999888888
Q ss_pred HHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 239 AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 239 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
+.++.++.-. .+ ++ ..+.. .+ .....+.++
T Consensus 177 lAl~~WlPq~--~r-----~~---~~~~~---------------------------------~~-------~~~~~~vw~ 206 (395)
T COG2807 177 LALLIWLPQA--LR-----EQ---AASIA---------------------------------TK-------LVSVRKVWR 206 (395)
T ss_pred HHHHHHhhhc--cc-----cc---ccccc---------------------------------cc-------ccccccccc
Confidence 8877664321 11 00 00000 00 000013577
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHHhHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG-RRPLLMLGSTGMA 397 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~ 397 (541)
+|.-|.+.+.+.++...+|....|+|.++.+.+.+ +..++.+.+...+..++..+....+.+|.. +|+..+....++.
T Consensus 207 ~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s-a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 207 SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS-AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC-HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88899999999999999999999999999999874 556666999999999999999999999865 4666666666666
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccC-CchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 398 VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIF-PTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
++.+.+.+.... .+.. . .+..+....+.+|+..+.+.... .++..+.-.|+.+.++++-.++||.
T Consensus 286 ~G~~G~~~~P~~--------~~~l--w----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 286 VGLVGLLLAPGQ--------LPIL--W----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred HHHHHHHHhhhh--------HHHH--H----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 766666543221 1111 1 23334444444455555554443 3456778889999999999999999
Q ss_pred HHHHHHHhhc-chhHHHHHHHHHHHHHHHH
Q 009185 477 SFLSISRAVT-FGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 477 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 505 (541)
++|.+.|..| |...+..++.+.++..+.-
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999887 5555555555555544444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=225.10 Aligned_cols=345 Identities=14% Similarity=0.079 Sum_probs=260.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchh
Q 009185 101 NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAP 180 (541)
Q Consensus 101 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~ 180 (541)
+-+++++|++.+.+.+...+..++.|.+.||+|+|..+++|++++.+.++++++.++|++++++|.+||+|.+...+...
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCccc-cchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCC
Q 009185 181 VYTTEISPAM-TRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGR 259 (541)
Q Consensus 181 ~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 259 (541)
++++|.+|++ +|++++|+.-.+.++|.++||.+|+.+. +..|.+.+|++.++++++-..+.+++-|+.+ .+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY---e~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~ 253 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY---EFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD 253 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH---hhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC
Confidence 9999999865 5899999999999999999999999999 8889999999998888887776665433311 00
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhH
Q 009185 260 FADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAV 339 (541)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (541)
.++ ..+..+++ +.+++|.++...........+....
T Consensus 254 ~~~-------------------------------------~~~~~~~~-------~Ll~dP~I~~~agai~~~n~~lafL 289 (464)
T KOG3764|consen 254 PDS-------------------------------------TEQGTPMW-------SLLMDPYILLIAGAITFSNSSLAFL 289 (464)
T ss_pred ccc-------------------------------------cccCccHH-------HHHhCchHhhhhcchhhccchHHHh
Confidence 000 00001111 2455666766666666566666666
Q ss_pred hhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH--HhHHHHHHHHHHHHHHhhhcCCCCCch
Q 009185 340 VYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM--LGSTGMAVSLAVLGLGSKYLDQSDIKP 417 (541)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (541)
.-.++.+..+....+....+..+....+...++..+.|.+.||++.-+++. .+.+...+++....+....
T Consensus 290 ePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~-------- 361 (464)
T KOG3764|consen 290 EPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI-------- 361 (464)
T ss_pred CcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH--------
Confidence 666677666655566667787888899999999999999999999543333 3333333333333333221
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccceeeecccCCch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 009185 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK---FRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFIL 494 (541)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 494 (541)
...++.....++..+.......|.. .+..+....+ ..|.++++......++.++||.+.|.+.+..|+.|...+.
T Consensus 362 -~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~ii 439 (464)
T KOG3764|consen 362 -AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTII 439 (464)
T ss_pred -HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHH
Confidence 2233344445555555555455554 3333333333 6789999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHh
Q 009185 495 SGITAVGTVFFYF 507 (541)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (541)
+...++..-++.+
T Consensus 440 g~~n~iyapvl~l 452 (464)
T KOG3764|consen 440 GILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=227.69 Aligned_cols=339 Identities=13% Similarity=0.097 Sum_probs=234.6
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc----chh-HHHHHHHHHHHHHHHHHHHhccc------HHH
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC----IGR-RYTIVLAAATFLLGALLMGLAPS------FLF 160 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~a~~------~~~ 160 (541)
+.+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.+++.+.++ +..
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4557788999999999999999999999999999999997 687 45677888888888888877654 456
Q ss_pred HHHHHHHHhhcccccccchhhhhhhcC-ccccchhhchHhHHHHHHHHHHHHHHHhhhcC----CCCcchhHHHHHhhhH
Q 009185 161 LMAGRVVSGIGVGYSLMIAPVYTTEIS-PAMTRGFLSSLPEVFINFGILLGYISNYALSG----LPEHINWRLMLGLAAL 235 (541)
Q Consensus 161 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~~~~gwr~~f~~~~~ 235 (541)
+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+.. ..+..+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 777889999998888888888889987 46899999999888888888777665544431 1135689999998887
Q ss_pred HHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 236 PAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 236 ~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
++++..+. .+..+|+++. .+.++ + ++.+.++.++
T Consensus 182 l~~~~~~~~~~~~~e~~~~----~~~~~---------~-----------------------------~~~~~~~~~~--- 216 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSE----IPKNI---------E-----------------------------KKLSLKQIFK--- 216 (437)
T ss_pred HHHHHHHHHHcCCEecCCC----CCccc---------c-----------------------------cCCCHHHHHH---
Confidence 77766554 4556665310 00000 0 0000111111
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGST 394 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 394 (541)
..+++|.++...+..++..........+.+.|.+...+ +....+.+.....++.+++.++.+++.||+|+|+.+.++..
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~ 295 (437)
T TIGR00792 217 ALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGIL 295 (437)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 12344555555555555555555555555556554444 33444556677789999999999999999999999988887
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC-------chhhhhhhHHHHHHH
Q 009185 395 GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP-------TKFRAQGSSLAISVN 467 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~ 467 (541)
+.+++.+.+.+... ..+ ......+..++......+..+++.+|..+ ++.+|.+.|+.+...
T Consensus 296 ~~~~~~~~~~~~~~--------~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 363 (437)
T TIGR00792 296 LMVLGYLIFFFAGS--------NLP----LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR 363 (437)
T ss_pred HHHHHHHHHHHcch--------hHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence 77777666544210 011 11222222233333333555666677654 456799999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcch
Q 009185 468 RLVSGIVAMSFLSISRAVTFG 488 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~~ 488 (541)
.++..+++.+.|.+.+..|+.
T Consensus 364 ~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 364 KLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999887763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=223.31 Aligned_cols=328 Identities=15% Similarity=0.082 Sum_probs=229.1
Q ss_pred cchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-----hhHHH-HHHHHHHHHHHHHHHHhc---c
Q 009185 86 IGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-----GRRYT-IVLAAATFLLGALLMGLA---P 156 (541)
Q Consensus 86 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~a---~ 156 (541)
....++++|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3457788999999999999999999755 555555 99999999998 89886 567788888887777787 4
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch--------hHH
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN--------WRL 228 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g--------wr~ 228 (541)
+++.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+. +..+ ||.
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA---SPEFANTGLITLWGY 158 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh---hhcccccccccccHH
Confidence 66677778888899888889999999999999999999999999999999999999999887 5556 999
Q ss_pred HHHhhhHHHHHHHHHHhc-CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhH
Q 009185 229 MLGLAALPAIAVAFGVIA-MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWK 307 (541)
Q Consensus 229 ~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (541)
.|++.++..++..+..++ .||+++. +++.++..+. .. ..++
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------~~---------------------~~~~ 200 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------VL---------------------KPIR 200 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------HH---------------------HHHH
Confidence 999988877766655443 5664320 0000000000 00 0111
Q ss_pred HhhcCCCchhHHH---HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 009185 308 ELLLRPSRPLRRI---LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMG-IAKTSFVLISALYLDHF 383 (541)
Q Consensus 308 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~ 383 (541)
+. ++++ .++...+..++..........+.|.|+++. +.+....+......+ +..+++.+++|++.||+
T Consensus 201 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~ 272 (356)
T TIGR00901 201 EF-------FQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-GFSKEEIALVAKINGLLGAILGGLIGGIIMQPL 272 (356)
T ss_pred HH-------HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1222 244444455555666777788899999884 445566664555444 67789999999999999
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHhhhcCCCC--CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhH
Q 009185 384 GRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD--IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSS 461 (541)
Q Consensus 384 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 461 (541)
|+|+.+..+.++.+++..++.+........+ ....+ .+....+..++......+...++..|.+|++.||+..|
T Consensus 273 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 348 (356)
T TIGR00901 273 NILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL----MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMA 348 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 9999988888777776655544321110000 00111 22222233333334444667788999999999999999
Q ss_pred HHHHHHH
Q 009185 462 LAISVNR 468 (541)
Q Consensus 462 ~~~~~~~ 468 (541)
+.+...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=220.40 Aligned_cols=402 Identities=13% Similarity=0.069 Sum_probs=261.5
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc------ccHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA------PSFLFL 161 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a------~~~~~l 161 (541)
.++...|.+++++|++..+++++.++. ..+..++++.|++.||+|||+++.++.+++++++++++++ ++++.+
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l 123 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL 123 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence 456777889999999999999998874 4556788889999999999999999999999999999997 689999
Q ss_pred HHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHH-HHHHHhhhcCCCCcchhHHHHHhhhHHHHHH
Q 009185 162 MAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILL-GYISNYALSGLPEHINWRLMLGLAALPAIAV 240 (541)
Q Consensus 162 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~ 240 (541)
++.|++.|+|.+...+.+...+.+|+| ++||++.|+...+.++|.++ +++..+++. .+|++.|++.+++.++.
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 68999999999999999975 555555543 36888888866666554
Q ss_pred HH-HHhcC--CCChHHHHhcCChHHHHHHHHHhcCCh--------------------------------------hhHHH
Q 009185 241 AF-GVIAM--PESPRWLVMKGRFADAKQALIKTSDSV--------------------------------------EEAEF 279 (541)
Q Consensus 241 ~~-~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~ 279 (541)
.+ ..+++ |+++++..++++.+++++..++..+.. .....
T Consensus 198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~ 277 (591)
T PTZ00207 198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV 277 (591)
T ss_pred HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44 33444 444444333333233333211111100 00000
Q ss_pred HHHHHHH----HHH-------hhhhh--h-c----cCC-----------cC-------C-c-chhHHhhcCCCchhHHHH
Q 009185 280 RLNEMTR----TIA-------DLGHA--A-S----SNN-----------WQ-------G-Q-GVWKELLLRPSRPLRRIL 321 (541)
Q Consensus 280 ~~~~~~~----~~~-------~~~~~--~-~----~~~-----------~~-------~-~-~~~~~~~~~~~~~~~~~~ 321 (541)
....... ... ..+.. . + ..+ .. + . ....+ ..++.+++..
T Consensus 278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---t~~q~l~~~d 354 (591)
T PTZ00207 278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQE---TFIEGLKTAR 354 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcc---hHHHHHhchh
Confidence 0000000 000 00000 0 0 000 00 0 0 00001 1124567889
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCC-Cchh-hHHHHHHHHHHHHHHHHHHHHHHhhcCC--------chHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGIN-SKKQ-LVGVTVIMGIAKTSFVLISALYLDHFGR--------RPLLML 391 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~--------~~~~~~ 391 (541)
+|++...+++...........+-++.+...+. ...+ ...+.++.++++.+|++..|++.....+ |...+.
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~ 434 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF 434 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence 99999999999988888889999999988443 3331 2226788999999999999998722211 122222
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHH
Q 009185 392 GSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVS 471 (541)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 471 (541)
...++.++.+++.+.... . .+.+..+..++..+...++....++|++. ++-|+-+-+.....-+|.
T Consensus 435 ~~~~~~~~~lll~~~~p~---------~----~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs 500 (591)
T PTZ00207 435 IPSVCIITMLTLFLTLPK---------A----ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSA 500 (591)
T ss_pred HHHHHHHHHHHHHHHCCc---------c----HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHH
Confidence 222244545454443210 0 34455555555555566777888899999 767776666666666666
Q ss_pred HHH-HHHHHHHHHhhc-------------chhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 472 GIV-AMSFLSISRAVT-------------FGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 472 ~~~-~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.+. ..++|.++|... ++.+|++++++++++.+....+..+++
T Consensus 501 ~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 501 IFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 554 556677776432 456899999999988888766554444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=206.78 Aligned_cols=346 Identities=16% Similarity=0.113 Sum_probs=221.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccch
Q 009185 100 LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIA 179 (541)
Q Consensus 100 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 179 (541)
-+.+..-.|.+.+.|++...+.++.+|.++||+|||+++++|++..++..++.+++.|+..++++|++.|+..| ...++
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence 33455678999999999999999999999999999999999999999999999999999777777999999988 67888
Q ss_pred hhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch---hHHHHHhhhHHHHH-HHHHHhcCCCChHHHH
Q 009185 180 PVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN---WRLMLGLAALPAIA-VAFGVIAMPESPRWLV 255 (541)
Q Consensus 180 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g---wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~ 255 (541)
.++++|.+++|+|+++++.+.+++++|.++||.+|+++....+..| .-.+-++..+.... .....+++||+-+...
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 9999999999999999999999999999999999999983111222 11112222233332 3445678999832111
Q ss_pred hcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 009185 256 MKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASG 335 (541)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (541)
++ ++ .....+..++. .+..+. +.. ......+++.........-.+.+..+.+...
T Consensus 222 ~~---~~-~~~~~~~~~~~-------~~~~~~-~~~-------------~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l 276 (451)
T KOG2615|consen 222 RN---DE-HSTLQEAADDR-------LALLKF-ARI-------------FKVAALRNPPLLDFISVLRIFGLHYFLYLEL 276 (451)
T ss_pred hc---cc-ccchhhhhhhh-------hhhcch-hhh-------------hhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 11 00 00001100000 000000 000 0000111111111112222334444445555
Q ss_pred hhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC--CchHHHHhHHHHHHHHHHHHHHhhhcCCC
Q 009185 336 NDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG--RRPLLMLGSTGMAVSLAVLGLGSKYLDQS 413 (541)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (541)
+..+.++.+.+-++..+.++.+.|.+.+..++.+.+.........+|.+ .+-.+.....++.-.++++......
T Consensus 277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~---- 352 (451)
T KOG2615|consen 277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTP---- 352 (451)
T ss_pred HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccc----
Confidence 5555555555545555667777776777777777777766666666655 3344444444444433333332111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 414 DIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
..+........+......+....++....|++.||+.+|+....+.++-++||.+.|.+..+
T Consensus 353 ---------~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 353 ---------VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred ---------hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 12333333333333344456667788889999999999999999999999999999877653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=213.77 Aligned_cols=395 Identities=13% Similarity=0.064 Sum_probs=235.3
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHh
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAAATFLLGALLMGLAP-SFLFLMAGRVVSG 169 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~r~l~G 169 (541)
...++.+++|++..+.+++.+.+........+++|+++|| +|||+.++.+.++.+++.+++++++ +.+.++++|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4446779999999999999988877767777899999999 5999999999999999999999874 5677788899999
Q ss_pred hcccccccchhhhhhhcCcccc--chhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH---
Q 009185 170 IGVGYSLMIAPVYTTEISPAMT--RGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV--- 244 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~--- 244 (541)
+|.|...+...+++.|++|+++ |+.++++++.+.++|..+||.+++++. ++.|||+.|++.++..++.++.+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~---~~~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA---AKYGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998643 456889999999999999999999998 78899999998765444433222
Q ss_pred -hcCCCChHHHHhcCChHHHHHHH-----------HHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcC
Q 009185 245 -IAMPESPRWLVMKGRFADAKQAL-----------IKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLR 312 (541)
Q Consensus 245 -~~~~e~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (541)
..++|.++. ..+++.+...... ......+.+........ ........ ..++...
T Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~- 266 (500)
T PRK09584 201 QRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGV-VALGIVVI-----------FGKEAFA- 266 (500)
T ss_pred HHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHHH-----------HHHHHhh-
Confidence 223332100 0000000000000 00000000000000000 00000000 0000000
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhh----cC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 009185 313 PSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKD----AG----INSKKQLVGVTVIMGIAKTSFVLISALYLDH-- 382 (541)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-- 382 (541)
..+..+++.+..+. .+.....++......+.++.. .. ..-......+..+..+..++..++..++-+|
T Consensus 267 ~~~~~~~~~~~~~~--~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~ 344 (500)
T PRK09584 267 MKGAARRKMIVAFI--LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMG 344 (500)
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 00112222222221 112223333333444444332 11 0111223445666776777777776554444
Q ss_pred --cCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhh
Q 009185 383 --FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGS 460 (541)
Q Consensus 383 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 460 (541)
++..+.+.++.++.+++++.+.......+.....+.+ ..+...+..+.......|....++.+..|++.||.++
T Consensus 345 ~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~----~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 345 DRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVN----WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH----HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence 4455677888899999988887765432221111112 3344444455555566688888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 461 SLAISVNRLVSGIVAMSFLSIS----------RAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 461 g~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
|+......+|..++..+.+... ...++...|...++++++..++.+...
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887777666666666654221 112355677777766665555444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=209.08 Aligned_cols=373 Identities=12% Similarity=-0.018 Sum_probs=242.1
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHH--HHHHHHHHHHHHhhh-hhhhccchhHHHHHHHHHHH-HHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVL--VGSLNVCSLIGSLAA-GKTSDCIGRRYTIVLAAATF-LLG 148 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~~~~-~i~ 148 (541)
..+...++.+++..+...+.+|.+.+|.|.+.+++|++ .++..+...+.++++ ++..||+||||..++++.+. ++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 44555668888888889999999999999999999997 466788888888888 44799999998876655332 222
Q ss_pred HHHHH-h--ccc-HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc
Q 009185 149 ALLMG-L--APS-FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI 224 (541)
Q Consensus 149 ~~~~~-~--a~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~ 224 (541)
....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~---~~~ 160 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF---GKF 160 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 22222 1 222 3344445566667777777777788888888888888888888888999999998888888 788
Q ss_pred hhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcc
Q 009185 225 NWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQG 304 (541)
Q Consensus 225 gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (541)
|||..|++.++..++..+..++++|+++. +++.++ +. ..
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~--~~------------------------------------~~ 199 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL--AR------------------------------------RA 199 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch--hh------------------------------------HH
Confidence 99999999887777665555555443210 000000 00 00
Q ss_pred hhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 009185 305 VWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMG-IAKTSFVLISALYLDHF 383 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~ 383 (541)
..++ .+++|.++......++..........+.+.|+++.+ .+....+....... ...+++.++.|++.||+
T Consensus 200 ~~~~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G-~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~ 271 (390)
T TIGR02718 200 SLFR-------FFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAG-WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA 271 (390)
T ss_pred HHHH-------HHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcC-CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 223333444444445555555666667788888864 45666665666555 46677789999999999
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc-hhhhhhhHH
Q 009185 384 GRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT-KFRAQGSSL 462 (541)
Q Consensus 384 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~ 462 (541)
|+|+.+..+..+.++.............. ...+. +.......++......+...+...+..++ +.+++.+++
T Consensus 272 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 344 (390)
T TIGR02718 272 GLWRTFILGVGLAGSLALLWFAQAAFWLA---PGIAV----AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTA 344 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcccC---CcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 99998887666553332222211111000 00111 11111111111111112333444455554 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 463 AISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
.+...++|..++|.+.|.+.+..|+...|.+.+++.+++.++
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888777666655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=196.92 Aligned_cols=378 Identities=15% Similarity=0.136 Sum_probs=265.3
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccch-hHHHHHHHHHHHHHHHHHHHhcccH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG-RRYTIVLAAATFLLGALLMGLAPSF 158 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~a~~~ 158 (541)
++..+..+...|.++...++.|.|..|+|.+.+...+...++++++|.++||++ +||++.+..++.++........+++
T Consensus 12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f 91 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 444456667888889888999999999999999999999999999999999986 6888888888888888888888999
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHH-HhhhcCCCCcchhHHHHHhhhHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYIS-NYALSGLPEHINWRLMLGLAALPA 237 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~~~~gwr~~f~~~~~~~ 237 (541)
+.+++.-++..+......|...++..+... +++.-.|-.-...++|.+++.+. ++.+....+..+..+.+++.+...
T Consensus 92 ~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (400)
T PF03825_consen 92 WWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILS 169 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 999888888888888888888888888775 45555666677777777777443 222321112223334566666556
Q ss_pred HHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchh
Q 009185 238 IAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPL 317 (541)
Q Consensus 238 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (541)
++.....+.+|+.|+. ++.++..+ +...++. .+.+
T Consensus 170 ~ll~~~~l~lp~~~~~----~~~~~~~~-------------------------------------~~~~~~~----~~ll 204 (400)
T PF03825_consen 170 LLLAGFALFLPKTPPK----RSAKESVK-------------------------------------KLLGLDA----LKLL 204 (400)
T ss_pred HHHHHHHHhCCCCccc----cccCCCcc-------------------------------------cccchHH----HHHh
Confidence 5555556678887621 10000000 0000111 1245
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHH
Q 009185 318 RRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMA 397 (541)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 397 (541)
++|.+....+..+...........+.+.|+++.++.+....+.+..+..++.++.-...+++..|+|.++++.++.+..+
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~ 284 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYA 284 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66667777777777777888888999999999997666666767788889999999999999999999999999999988
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH-HHHHHHHHHH
Q 009185 398 VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV-NRLVSGIVAM 476 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~ 476 (541)
+=..++...... .+.............+............++.+..|++.|+++.++++.. ..+|+.+|..
T Consensus 285 vR~~l~a~~~~~--------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 285 VRWLLYAYFSDP--------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred HHHHHHHHhcCC--------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 888887764221 1211111111111222222222234568889999999999999998876 5789999999
Q ss_pred HHHHHHHhhcchh------HHHHHHHHHHHHHHHHHhhcccC
Q 009185 477 SFLSISRAVTFGG------MFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 477 ~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+.|.+.|..|.+. .+.+.+++.++..++.+++.|++
T Consensus 357 igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 357 IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999887554 34445555555555555554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=191.07 Aligned_cols=361 Identities=11% Similarity=0.051 Sum_probs=254.6
Q ss_pred ccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHH
Q 009185 64 FNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAA 142 (541)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~ 142 (541)
....+.++++.+|+..|-.+++....+.+..+...|.+++.++..++.+.|+.-..+.+.++|++.|| +|-|..-++-+
T Consensus 38 ~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 38 ALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 33445566677888889999999999999999999999999999999999999999999999999997 68777766666
Q ss_pred HHHHHHHHHHHh---cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC
Q 009185 143 ATFLLGALLMGL---APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG 219 (541)
Q Consensus 143 ~~~~i~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 219 (541)
.+..+|.++++. .+.+|+++++||+.|+|.-...++...+..-||..|+.+.++|+.....-+|+.+-..+.+++.
T Consensus 118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly- 196 (459)
T KOG4686|consen 118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY- 196 (459)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH-
Confidence 666777777664 5789999999999999998888999999999999999999999999999999887776666665
Q ss_pred CCCcch-------hH-----HHHHh-hhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHH
Q 009185 220 LPEHIN-------WR-----LMLGL-AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTR 286 (541)
Q Consensus 220 ~~~~~g-------wr-----~~f~~-~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (541)
+..+ -. ..+-. .....++.+...- -..+.+++.+.+.++...
T Consensus 197 --~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg------------~~D~rAerilh~e~g~~G----------- 251 (459)
T KOG4686|consen 197 --DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG------------LSDDRAERILHLEEGFLG----------- 251 (459)
T ss_pred --HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhhHHHHHHhhhcCccc-----------
Confidence 2211 00 00000 0111111111000 001111222111111000
Q ss_pred HHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHH
Q 009185 287 TIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMG 366 (541)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (541)
+..+..+ ..-.++.+|.+....+++......+....|.++++..+.++..++.+.+...
T Consensus 252 ---------------e~pkLtd------v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy 310 (459)
T KOG4686|consen 252 ---------------EEPKLTD------VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVY 310 (459)
T ss_pred ---------------CCccccc------ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence 0000011 1122456777778888888888888999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHH-HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccccccee
Q 009185 367 IAKTSFVLISALYLDHFGRRPLLMLGSTGMAVS-LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWV 445 (541)
Q Consensus 367 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (541)
..+.+.+++.|.++||+|++.+.+.+..+..+. -..+.+.... +|. .+............ ..+.
T Consensus 311 ~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls--------Py~---~m~~lGLsysllAc----slWP 375 (459)
T KOG4686|consen 311 GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLS--------PYT---SMTFLGLSYSLLAC----SLWP 375 (459)
T ss_pred hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc--------HHH---HHHHHhhhHHHHHH----HHhh
Confidence 899999999999999999987766554444433 3333322111 121 22222222222222 2355
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 446 YSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 446 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 486 (541)
.++.++|.++-|+++|.++.+.++|-++.|.+.|.+.|..|
T Consensus 376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 66777899999999999999999999999999999998776
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-22 Score=191.30 Aligned_cols=399 Identities=13% Similarity=0.073 Sum_probs=263.2
Q ss_pred hcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhc----cchhHHHHHHH-HHHHHHHHHHHHhccc
Q 009185 83 GYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSD----CIGRRYTIVLA-AATFLLGALLMGLAPS 157 (541)
Q Consensus 83 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~a~~ 157 (541)
.+......+.++.+.+++|.+....+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.+++++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 445555667777788999999999999999999999999999999999 59999988874 6667777778888776
Q ss_pred HH-----------------HHHHHHHHHhhcccccccchhhhhhhcCccccc--hhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 158 FL-----------------FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTR--GFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 158 ~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
++ .++++-.+..++.....+...+++.|.+|+++| +.+.++.+.+.++|.++|+.++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 223333344557777888899999999998865 57999999999999999999998751
Q ss_pred --CCC----Cc------chhHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHH
Q 009185 219 --GLP----EH------INWRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMT 285 (541)
Q Consensus 219 --~~~----~~------~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (541)
+.. .. .+.|+.|++.++..++..+ .++..+|.|... .++.++ +..++.. +.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~~~~~~~--~~~~~------- 243 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--SEAAPPS--KHGEE------- 243 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--hhccccc--ccchh-------
Confidence 100 00 2678999997777666655 556688875311 000000 0000000 00000
Q ss_pred HHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhh-cCCCCc------hh-
Q 009185 286 RTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKD-AGINSK------KQ- 357 (541)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~- 357 (541)
..++++++.. ....+.++.+++..++...+.+.+..|.+.+..+ ..+.++ ++
T Consensus 244 ------------------~~~~~i~~~~--~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~g 303 (477)
T TIGR01301 244 ------------------AFFGELFGAF--KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDG 303 (477)
T ss_pred ------------------hhHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHH
Confidence 1112221110 0112445666777777888888888888888764 222211 11
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhhcCC-chHHHHhHHHHHHHHHHHHHHhhhcC---CCC-----CchhHHHHHHH
Q 009185 358 ---LVGVTVIMGIAKTSFVLISALYLDHFGR-RPLLMLGSTGMAVSLAVLGLGSKYLD---QSD-----IKPAWAIALCV 425 (541)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~ 425 (541)
..+.....++...+.+++..++.+|+|+ |+...++.++.++++....+.....+ +.+ ..+........
T Consensus 304 vr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (477)
T TIGR01301 304 VRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASA 383 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHH
Confidence 2233445666666777888899999985 67778888888888777765543211 000 00000001233
Q ss_pred HHHHHHHHHHhccccccceeeecccCCc--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHH
Q 009185 426 IAVCAAVSFFSIGLGPITWVYSSEIFPT--KFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT--FGGMFFILSGITAVG 501 (541)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 501 (541)
+..+...|+.......+.++++++..++ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++..+++
T Consensus 384 l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~a 463 (477)
T TIGR01301 384 LIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVS 463 (477)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHH
Confidence 3444445555555556778888888884 455999999999999999999988888766665 344666667777788
Q ss_pred HHHHHhhcccCCC
Q 009185 502 TVFFYFFLPETKG 514 (541)
Q Consensus 502 ~~~~~~~~~~~~~ 514 (541)
++..++.+|+.+.
T Consensus 464 a~~~~~~~~~~~~ 476 (477)
T TIGR01301 464 GLLALILLPRPRV 476 (477)
T ss_pred HHHHHHhCCCCCC
Confidence 8888888887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=184.20 Aligned_cols=403 Identities=14% Similarity=0.103 Sum_probs=287.6
Q ss_pred CCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHH
Q 009185 62 PRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLA 141 (541)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 141 (541)
.+..+++|+++++.++-.+.+++.+..+++...+....|| +....-|+.-+|++.+....+++-|+.|++|-|..++++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3556677777788888888998988889999999999999 777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc------cHH--HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHH
Q 009185 142 AATFLLGALLMGLAP------SFL--FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYIS 213 (541)
Q Consensus 142 ~~~~~i~~~~~~~a~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 213 (541)
..+.++|..+-..+. .++ ....+..+.+.+.-.....-..+..-||++++|..+..+-.++..+|.++|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999987763 345 777889999998888887778888999999999999999999999999999999
Q ss_pred HhhhcCCC---CcchhHH--HHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 009185 214 NYALSGLP---EHINWRL--MLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRT 287 (541)
Q Consensus 214 ~~~l~~~~---~~~gwr~--~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (541)
...+.... ++..|-. .|+...+++.+.++ ..+..++.|+. .+..+.....+
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~~~~------------------ 252 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAALQD------------------ 252 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhhhhc------------------
Confidence 98887533 3445665 34443333333322 33333333220 00111110000
Q ss_pred HHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHH
Q 009185 288 IADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGI 367 (541)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (541)
..+..-. ++.++++.+....+.+......++...+.+...+...+... ..+|.......+
T Consensus 253 ----------------~~f~~si---~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~-~~aG~ig~l~iv 312 (480)
T KOG2563|consen 253 ----------------ASFPKSI---KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEG-VFAGYIGALMIV 312 (480)
T ss_pred ----------------CcHHHHH---HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCc-cccchhHHHHHH
Confidence 0011111 13466777777777777777777777776665555555544 677778889999
Q ss_pred HHHHHHHHHHHHHhhcCC-chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceee
Q 009185 368 AKTSFVLISALYLDHFGR-RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVY 446 (541)
Q Consensus 368 ~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (541)
++++++.+.|.+.||.+. |.+.++......++...+....... ...+.++..+...+++..+..|+..-+
T Consensus 313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~---------~~~viv~~t~~~~g~~~~~~~Pig~El 383 (480)
T KOG2563|consen 313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL---------GDSVIVFTTCGLLGFFGTGYLPIGFEL 383 (480)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC---------CceEehhhhHHHHHHhhcCCCCcceee
Confidence 999999999999999986 4444444444444422222222211 112256677778888999999999999
Q ss_pred ecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 009185 447 SSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT----FGGMFFILSGITAVGTVFFYFFLPETKGKSL 517 (541)
Q Consensus 447 ~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (541)
..|..-|..-++..|+.+..+++-+.+-..+.+...+..+ +...-+.....+++..++..++.++.++++.
T Consensus 384 gvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 384 GVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred eeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 9999767667899999999999999999999999888777 4444555555566666665555444444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=187.09 Aligned_cols=408 Identities=13% Similarity=0.066 Sum_probs=232.2
Q ss_pred cchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Q 009185 86 IGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAP-SFLFLM 162 (541)
Q Consensus 86 ~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~-~~~~l~ 162 (541)
...+...+| ++.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.++.. +...++
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~ 104 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLY 104 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 333444555 56778999999999999999999999999999999999 999999999999999988777643 223344
Q ss_pred HHHHHHhhcccccccchhhhhhhcCccc--cchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHH
Q 009185 163 AGRVVSGIGVGYSLMIAPVYTTEISPAM--TRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAV 240 (541)
Q Consensus 163 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~ 240 (541)
++..+.++|.|...+...+++.|.+|++ +|..++++.+.+.++|..++|.+.+++. +..|||+.|.+.++..++.
T Consensus 105 l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~---~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ---EEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH---hhhChHHHHHHHHHHHHHH
Confidence 4555555667777788889999999875 7999999999999999999999999998 7889999999866544443
Q ss_pred HHHHhcCCCChHHH-HhcCChHHHHHHHHHhcCChhh--------HHHHHH-HHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 241 AFGVIAMPESPRWL-VMKGRFADAKQALIKTSDSVEE--------AEFRLN-EMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 241 ~~~~~~~~e~p~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
++.+++..+..... ..++++.+.++........-.- ...... .............. ..-+....
T Consensus 182 li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 255 (493)
T PRK15462 182 LVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIG------LGVLAKIY 255 (493)
T ss_pred HHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 33332221110000 0000000000000000000000 000000 00000000000000 00000000
Q ss_pred cCCC-chhHHHHHH--HHHHHHHHHhhhhhhHhhccHHHHhhc-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 311 LRPS-RPLRRILIA--AIGVNFFMQASGNDAVVYYSPEVFKDA-----GINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382 (541)
Q Consensus 311 ~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 382 (541)
+.+. +.-|+|... .+.+........+.-...-+..|.++. .+.. .......++..+..++.+++.+++-.|
T Consensus 256 ~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~ 334 (493)
T PRK15462 256 RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE 334 (493)
T ss_pred HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 0000 111222211 111222222222222222223333321 1212 223446778888888888887777666
Q ss_pred cCC--ch-----HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh
Q 009185 383 FGR--RP-----LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF 455 (541)
Q Consensus 383 ~g~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 455 (541)
..+ |. -..++.++++++++.+.+.....+.+.. .....++...++....-....|+..+.++++.|++.
T Consensus 335 l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~----~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~ 410 (493)
T PRK15462 335 SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGH----SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV 410 (493)
T ss_pred HhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence 522 21 2668888888888888776544322211 112234455555566777777999999999999999
Q ss_pred hhhhhHHHHHHH-HHHHHHHHHHHHHHHH------------hhcchhHHHHHHHHHHHH-HHHHHh
Q 009185 456 RAQGSSLAISVN-RLVSGIVAMSFLSISR------------AVTFGGMFFILSGITAVG-TVFFYF 507 (541)
Q Consensus 456 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~-~~~~~~ 507 (541)
+|..+|+..... .++..++..+.+.... ...+...|...+.+.+++ .++++.
T Consensus 411 ~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 476 (493)
T PRK15462 411 TGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMI 476 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986533 4555555555544321 112444666666665555 444333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=201.25 Aligned_cols=372 Identities=13% Similarity=-0.019 Sum_probs=232.7
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccch-----hHHHHHHHHHHHH-HH
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG-----RRYTIVLAAATFL-LG 148 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-i~ 148 (541)
+...++..++.......+.+.+.+++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++
T Consensus 31 ~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~ 109 (468)
T TIGR00788 31 GLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAIL 109 (468)
T ss_pred HHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 3334566666634445566678888999999999999999999999666 999999998 7888888877763 44
Q ss_pred HHHHHhcccHHHHH-HHHHHHhhcccccccchhhhhhhcCccccchhhchHh---HHHHHHHHHHHHHHHhhhcCCCCcc
Q 009185 149 ALLMGLAPSFLFLM-AGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLP---EVFINFGILLGYISNYALSGLPEHI 224 (541)
Q Consensus 149 ~~~~~~a~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~G~~~g~~~~~~l~~~~~~~ 224 (541)
....+..++...+. +.+++.+++.+...++.-++..|..+ +++....+.. ....++|.++|+.+++.+. +..
T Consensus 110 ~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~---~~~ 185 (468)
T TIGR00788 110 YGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL---DKT 185 (468)
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH---Hhc
Confidence 34444445644444 47999999999999999999999998 5555443333 3344589999999999998 778
Q ss_pred hhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcc
Q 009185 225 NWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQG 304 (541)
Q Consensus 225 gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (541)
+||..|++.+.+.++..+..++++|++.....+.+.++..... .. .........+
T Consensus 186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~--------------------- 240 (468)
T TIGR00788 186 LTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA-LL---TLGVLANVKV--------------------- 240 (468)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh-hh---hhhHHHHHHH---------------------
Confidence 9999999977777766666677888631000000000000000 00 0000000000
Q ss_pred hhHHhhcCCCchhHHHHHHHHHHHHHH-HhhhhhhHhh-ccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 305 VWKELLLRPSRPLRRILIAAIGVNFFM-QASGNDAVVY-YSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH 382 (541)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 382 (541)
..++.. +.+++|.++...+..++ +......... +. +..+..+.++...+......+++.+++..+.+++.+|
T Consensus 241 ~~~~l~----~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~--~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~ 314 (468)
T TIGR00788 241 QILGLR----GAIQLLEIAKPLIFIFLSYANLPGASGSVFC--ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT 314 (468)
T ss_pred HHHHHH----HHHhcHHHHHHHHHHHHHHhhcCCCCceeEE--EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 001111 12334444433333332 1111111111 11 1123345677778878888999999999999999999
Q ss_pred cCCchHHHHhHHHHHHHHHHHHHHhhhcCCCC-CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhH
Q 009185 383 FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD-IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSS 461 (541)
Q Consensus 383 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 461 (541)
++.|+.+.++.++.+++..........++... ....+......++..+. +.....|. ..++.+..|++.+|+.++
T Consensus 315 ~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~---~g~~~~~~-~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 315 FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVL---AQLKFMPF-LVLLARLCPSGCESSVFA 390 (468)
T ss_pred CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHH---HHHHHccH-HHHHHHhCCCCceehHHH
Confidence 99999998888887776655332111111000 00011111111111112 22222233 578889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 462 LAISVNRLVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~g 486 (541)
+.+.+.++|..+++.+.+.+.+..|
T Consensus 391 l~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 391 LLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999998887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=195.51 Aligned_cols=352 Identities=11% Similarity=0.033 Sum_probs=222.8
Q ss_pred cccchhhhhH-HHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhc----cchh-HHHHHHHHHHHHHHHHHHHhccc
Q 009185 84 YDIGVMSGAI-LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSD----CIGR-RYTIVLAAATFLLGALLMGLAPS 157 (541)
Q Consensus 84 ~~~~~~~~~~-~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~a~~ 157 (541)
+....+.+.+ .++.+.+|+++..+|.+..+.-+.-++..|+.|.++| |+|| |+.++.+.+..+++.+++...++
T Consensus 20 ~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~ 99 (473)
T PRK10429 20 FAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHL 99 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCC
Confidence 3334444444 4677778999999999999999999999999999999 6698 66777788888887666644331
Q ss_pred ------HHHHHHHHHHHhhcccccccchhhhhhhcC-ccccchhhchHhHHHHHHHHHHHHHHHhhh----cCCCCcchh
Q 009185 158 ------FLFLMAGRVVSGIGVGYSLMIAPVYTTEIS-PAMTRGFLSSLPEVFINFGILLGYISNYAL----SGLPEHINW 226 (541)
Q Consensus 158 ------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l----~~~~~~~gw 226 (541)
+..+++.-++.+++.....+.-.+++.|.. ++++|.+..++-..+.++|..+.+.+...+ ....+..+|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~ 179 (473)
T PRK10429 100 FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGF 179 (473)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence 344556667778888888888899999998 588999998887777777755554443322 111123468
Q ss_pred HHHHHhhhHHHHHHHHHH-hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcch
Q 009185 227 RLMLGLAALPAIAVAFGV-IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGV 305 (541)
Q Consensus 227 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (541)
+....+.++..++..+.. +..+|.+.. ++.+.. .+++.+
T Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~~~~------------------------------------~~~~~~ 219 (473)
T PRK10429 180 QMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQVSA------------------------------------EGSHLT 219 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceecCCc----cccccc------------------------------------cccCCC
Confidence 887777666666544433 336664310 000000 000011
Q ss_pred hHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009185 306 WKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGR 385 (541)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 385 (541)
+++.++ ..++++.+..+.+..++..........+.++|.+...+ +....+.+.....++.+++.++.+++.||+|+
T Consensus 220 ~~~~~~---~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk 295 (473)
T PRK10429 220 LKDIVA---LIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSR 295 (473)
T ss_pred HHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 222221 12344555555555555555555555566656555544 33444445666678889999999999999999
Q ss_pred chHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC-------chhhhh
Q 009185 386 RPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP-------TKFRAQ 458 (541)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~ 458 (541)
|+.+.++..+.+++.+.+....... . ...+. +++..+..++......+..+++.+|..+ .+..|.
T Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~----~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 296 RILWAGASIFPVLSCGVLLLMGLAA-P---HNALL----IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-c---hhHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 9998887776665555443321110 0 11121 1122222223333333455667777754 334566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009185 459 GSSLAISVNRLVSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 459 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 487 (541)
..|.......++.++++.+.|.+.+..||
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999987776
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=189.62 Aligned_cols=338 Identities=13% Similarity=0.038 Sum_probs=214.2
Q ss_pred hhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc----chh-HHHHHHHHHHHHHHHHHHHhccc------HH
Q 009185 91 GAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC----IGR-RYTIVLAAATFLLGALLMGLAPS------FL 159 (541)
Q Consensus 91 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~a~~------~~ 159 (541)
.+..++.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ ++
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~ 110 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII 110 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34557888999999999999999999999999999999998 787 55566777777777766655543 45
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcC-ccccchhhchHhHHHHHHHHHHHHHHHhhhcC----CCCcchhHHHHHhhh
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEIS-PAMTRGFLSSLPEVFINFGILLGYISNYALSG----LPEHINWRLMLGLAA 234 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~~~~gwr~~f~~~~ 234 (541)
.+++..++.+.+.......-.++..|+. ++++|++..++...+..+|..+++.+...+.. .....+|+..+.+.+
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 5666667777777777777788999998 45789988888888888887777654433321 112458998888877
Q ss_pred HHHHHHHHHHh-cCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCC
Q 009185 235 LPAIAVAFGVI-AMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRP 313 (541)
Q Consensus 235 ~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (541)
+++++..+..+ ..+|.++ +++ + ++ ... .+..+.
T Consensus 191 ii~~v~~~~~~~~~~e~~~----~~~-~----------~~-~~~-------------------------~~~~~~----- 224 (444)
T PRK09669 191 LLGVVLFFCCFFMTKERYT----PEV-D----------NS-SSV-------------------------WKDLKL----- 224 (444)
T ss_pred HHHHHHHHHHhCCeEEecC----CCC-c----------CC-CCH-------------------------HHHHHH-----
Confidence 77666554443 3444311 000 0 00 000 001111
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhH
Q 009185 314 SRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGS 393 (541)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 393 (541)
.++++.++.+.+..++............++|.+.... .............+..+++.++.+++.||+|+|+.+..+.
T Consensus 225 --~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~ 301 (444)
T PRK09669 225 --LLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI 301 (444)
T ss_pred --HhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 2334444444443333333333222333333333332 2333343555566778888899999999999999888776
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC-------chhhhhhhHHHHHH
Q 009185 394 TGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP-------TKFRAQGSSLAISV 466 (541)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~ 466 (541)
.+.+++...+.+... ...+ .+.+..+..++......+..+++++|..+ .+..|...|..+.+
T Consensus 302 ~~~~~~~~~~~~~~~-------~~~~----~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~ 370 (444)
T PRK09669 302 VAFVILSALIFFIPP-------SNVW----LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA 370 (444)
T ss_pred HHHHHHHHHHHHhCc-------chHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence 655543332222110 0111 12222333444444555777788888775 23346678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcch
Q 009185 467 NRLVSGIVAMSFLSISRAVTFG 488 (541)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~g~~ 488 (541)
..+|.++++.+.|.+.+..|+.
T Consensus 371 ~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 371 IKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999988763
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=176.21 Aligned_cols=375 Identities=14% Similarity=0.173 Sum_probs=239.3
Q ss_pred hhhhcccchhhhhHHHHh-hhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH--HHHHHH-HHHhc
Q 009185 80 ILLGYDIGVMSGAILYIR-DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAAT--FLLGAL-LMGLA 155 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~--~~i~~~-~~~~a 155 (541)
+...+..+...|..+... ++.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+ ...+.+ ...+.
T Consensus 17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~ 96 (412)
T PF01306_consen 17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG 96 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777777555 45899999999999999999999999999999999965544333222 222222 22222
Q ss_pred ----ccHH-HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHH
Q 009185 156 ----PSFL-FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLML 230 (541)
Q Consensus 156 ----~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f 230 (541)
.|++ ..+++-+..|+...+..|+.-+++.++. ++.+.=.|-.-+..++|.+++..++|.+. + .+-+..|
T Consensus 97 pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~---~-i~p~~~f 170 (412)
T PF01306_consen 97 PLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILF---N-INPNIIF 170 (412)
T ss_dssp HHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheee---e-eCccHHH
Confidence 2332 2333334445444455555555544443 34455566677888999999999999987 3 4667788
Q ss_pred HhhhHHHHHHHHHHhcC-CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 231 GLAALPAIAVAFGVIAM-PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 231 ~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
|+....+++..++.++. |+.++.....+..+ .++++.+.++.
T Consensus 171 wi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 213 (412)
T PF01306_consen 171 WIASAAAIILLLLLLLLKPDVPPQAEVADALG-------------------------------------AKKDKVSLKDV 213 (412)
T ss_dssp HHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-------------------------------------S------HHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-------------------------------------cCCCCCcHHHH
Confidence 88666666555544443 33322100000000 00011112222
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGIN---SKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR 386 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 386 (541)
. +.++.|.+|.+.+........+..+-...+.|....... +....|.+.+...+..++.-.+..++.+|+|.|
T Consensus 214 ~----~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k 289 (412)
T PF01306_consen 214 L----SLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK 289 (412)
T ss_dssp H----HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred H----HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 2 246677888887777666666777766677777765543 234467778888899999999999999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHH-HH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLA-IS 465 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~ 465 (541)
+.++++..++++=..+.++.... |.....-..-++-..... ....-|+.+.+|++..++...+. +.
T Consensus 290 ~~Lllag~i~~iRi~~~~~~~~~---------~~i~~~klLH~~e~~l~l----va~fkYI~~~fd~rlsAt~y~v~~~~ 356 (412)
T PF01306_consen 290 NLLLLAGVIMAIRIIGSGFATNP---------WVISLIKLLHALEFPLLL----VAAFKYITAHFDKRLSATLYLVGFQF 356 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SH---------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHS-GGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCHhHHHHHHHHHHHH
Confidence 99999999999888887765442 221111112222221221 23357888999999988988885 67
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 466 VNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
..+++.++.+.+.|.+.|+.|++.+|++++.+.++..++..+.+++.++
T Consensus 357 ~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 357 AKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 8899999999999999999999999999999988888888777766554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=182.36 Aligned_cols=333 Identities=11% Similarity=0.045 Sum_probs=207.4
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc----hhHHHH-HHHHHHHHHHHHHHH-h----ccc--HH
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI----GRRYTI-VLAAATFLLGALLMG-L----APS--FL 159 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~-~----a~~--~~ 159 (541)
+.+++.+.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+.+++.. . +++ .+
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 33578888999999999999999999999999999999996 777654 556555554444432 1 111 23
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCcc-ccchhhchHhHHH-----HHHHHHHHHHHHhhhcCCCCcc--hhHHHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISPA-MTRGFLSSLPEVF-----INFGILLGYISNYALSGLPEHI--NWRLMLG 231 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~~~~~l~~~~~~~--gwr~~f~ 231 (541)
.+++.-++.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|++++... +.. +|.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g---~~~~~~~~~~~~ 187 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP---EEMVSVYHFWTI 187 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHH
Confidence 344556677888888888777877777754 6788776665543 3355566676665442 111 2221112
Q ss_pred hhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 232 LAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
+.++++++..+ .....||+++ +++++ .. .+..++
T Consensus 188 ~~~v~~~~~~~~~~~~~~e~~~----~~~~~-------------~~-------------------------~~~~~~--- 222 (448)
T PRK09848 188 VLAIAGMVLYFICFKSTRENVV----RIVAQ-------------PS-------------------------LKISLQ--- 222 (448)
T ss_pred HHHHHHHHHHHHHHcCcEeccC----CCccC-------------CC-------------------------HHHHHH---
Confidence 22333333222 2333555421 00000 00 000011
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 009185 311 LRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390 (541)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 390 (541)
..+++|.++...+..++..........+.|.|+++..+.+....+.......++.+++.++.+++.||+|+|+.+.
T Consensus 223 ----~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~ 298 (448)
T PRK09848 223 ----TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFL 298 (448)
T ss_pred ----HHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 1344556666666666666666666667777877766655555553344446677889999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch-------hhhhhhHHH
Q 009185 391 LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK-------FRAQGSSLA 463 (541)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~ 463 (541)
++.++..++.+.+.+... ...|. .....+..+.+.....+...++.+|..|.+ .+|...|+.
T Consensus 299 ~g~~~~~i~~~~~~~~~~-------~~~~~----~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~ 367 (448)
T PRK09848 299 IGALLGTCGYLLFFWVSV-------WSLPV----ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLF 367 (448)
T ss_pred HHHHHHHHHHHHHHHcCc-------hhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHH
Confidence 998887777666653211 11121 111122223333333355566767776643 458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 009185 464 ISVNRLVSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~g~ 487 (541)
+....+|.++++.+.+.+.+..||
T Consensus 368 ~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 368 SFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887765
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=181.46 Aligned_cols=340 Identities=15% Similarity=0.129 Sum_probs=247.9
Q ss_pred hhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhc----cchhHHH-HHHHHHHHHHHHHHHHhc-c-------c
Q 009185 91 GAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSD----CIGRRYT-IVLAAATFLLGALLMGLA-P-------S 157 (541)
Q Consensus 91 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~i~~~~~~~a-~-------~ 157 (541)
.+.+.+.+.+|+++..+|.+..+..+..++..|+.|.++| |+||||. ++.|.+..+++.+++... + .
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4456777888999999999999999999999999999999 8996554 556888888888887766 4 2
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhcCc-cccchhhchHhHHHHHHHHHHHHHHHhhhcCCC-C--c-chhHHHHHh
Q 009185 158 FLFLMAGRVVSGIGVGYSLMIAPVYTTEISP-AMTRGFLSSLPEVFINFGILLGYISNYALSGLP-E--H-INWRLMLGL 232 (541)
Q Consensus 158 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~--~-~gwr~~f~~ 232 (541)
...+.+.-++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.... + . .+|++..++
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 3345677777799999999999999999997 578999999998888888876666665555311 1 1 279999988
Q ss_pred hhHHHHHHHHH-HhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhc
Q 009185 233 AALPAIAVAFG-VIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLL 311 (541)
Q Consensus 233 ~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (541)
.+++.++..+. .+..+|.++ +.++ ..++.++++.++
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------------------~~~~~~~~~~~~ 219 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV------EVTE-------------------------------------QEKKISLRDSLR 219 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc------cccc-------------------------------------cccccccccchh
Confidence 77777766554 445666211 0000 001111122121
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 009185 312 RPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391 (541)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 391 (541)
..+++|.+..+.+..++............+.|.+...+.+. ..+.......++.+++.++.++++||+|+|+.+..
T Consensus 220 ---~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~ 295 (428)
T PF13347_consen 220 ---SLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII 295 (428)
T ss_pred ---hhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence 23445556666666666666677777777778777666553 44447778889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc-------hhhhhhhHHHH
Q 009185 392 GSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT-------KFRAQGSSLAI 464 (541)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~ 464 (541)
+..+.+++.+++.+.... ....+.+..+..+..........+++.+|..+. +..|..+|+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 296 GLLLAALGFLLLFFLGPG-----------SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred hHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 999999888877665421 111444555555566666667788888988763 34588899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcch
Q 009185 465 SVNRLVSGIVAMSFLSISRAVTFG 488 (541)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~g~~ 488 (541)
....++..+++.+.+.+.+..|+.
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999998877754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=174.05 Aligned_cols=280 Identities=13% Similarity=0.054 Sum_probs=202.0
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCC-----------
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLP----------- 221 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------- 221 (541)
+...+|+.++++-++.|.|.+...+..+.++++..+++++++.+++.+.++++|..++|++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 345789999999999999999999999999999999999999999999999999999999999877311
Q ss_pred --CcchhHHHHHhhhHHHHHHHHHHhc--CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhcc
Q 009185 222 --EHINWRLMLGLAALPAIAVAFGVIA--MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASS 297 (541)
Q Consensus 222 --~~~gwr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (541)
+..+|+++|++.+...++..+.+.+ +||... +.++ +. ..+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~~----~~~------------------------ 128 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--RV----SSG------------------------ 128 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--cc----ccc------------------------
Confidence 0147999999755554444443333 454311 0000 00 000
Q ss_pred CCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhc--CCCCchhhHHHHHHHHHHHHHHHHH
Q 009185 298 NNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDA--GINSKKQLVGVTVIMGIAKTSFVLI 375 (541)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (541)
+. ... .+.++++.++...+..+++.........|.+.|+.+. .+.++...+........+.++|+++
T Consensus 129 ---~~-~~~-------~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~ 197 (310)
T TIGR01272 129 ---DT-TQK-------TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI 197 (310)
T ss_pred ---cc-cch-------hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 1234566777777888888888999999999999754 3566777777889999999999999
Q ss_pred HHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh
Q 009185 376 SALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF 455 (541)
Q Consensus 376 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 455 (541)
++++.||+++|+.+.++..+.+++.+++..... .+. .......+++.....|...+...+..|++
T Consensus 198 ~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~---------~~~-----~~~~~l~g~~~s~i~P~~~s~a~~~~~~~- 262 (310)
T TIGR01272 198 GSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG---------YVA-----MWFVLALGLFNSIMFPTIFSLALNALGRH- 262 (310)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC---------HHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 999999999998888777766666544433111 111 11222445666666677777777877764
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 009185 456 RAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILS 495 (541)
Q Consensus 456 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 495 (541)
.+++.++. ..+.+|+++.|++.|.+.|..|.+..+++..
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 56677775 6788999999999999999999877776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=174.56 Aligned_cols=365 Identities=16% Similarity=0.177 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccchhHHH-HHHHHHHHHHHHHHHHhc-c-cHHHHHHHHHHHhhcccccccchhh
Q 009185 105 IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYT-IVLAAATFLLGALLMGLA-P-SFLFLMAGRVVSGIGVGYSLMIAPV 181 (541)
Q Consensus 105 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~~~~a-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 181 (541)
+..++..++..+..++..|+.|.++|+-|+||. +.+..++..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999999999999999999986555 455555566677776664 3 4555555566666777778888899
Q ss_pred hhhhcCccccc--------------------------hhhchHhHHHHHHHHHHHHHHHhhhcCCCC-----cchhHHHH
Q 009185 182 YTTEISPAMTR--------------------------GFLSSLPEVFINFGILLGYISNYALSGLPE-----HINWRLML 230 (541)
Q Consensus 182 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-----~~gwr~~f 230 (541)
++.|..+++++ ++..+.-.....+|.++.-++.-.+....+ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 899888888888888877666555432111 23468888
Q ss_pred HhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHh
Q 009185 231 GLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKEL 309 (541)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (541)
.+.++.-++..+ .++++||.|+. +..++..... ....++....
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~----~~~~~~~~~~----------~~g~~~l~~t---------------------- 273 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGP----RPLPSGSSYL----------RFGFKRLWRT---------------------- 273 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC----CCCCcchhHH----------HHHHHHHHHH----------------------
Confidence 887777665555 55668877642 0000000000 0011111111
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--h
Q 009185 310 LLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR--P 387 (541)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~ 387 (541)
+ ++..+.|....+++.++++.-+..++......|.++..+.+..+...+..+..+.+++|.++.|++.||+|.| +
T Consensus 274 ~---k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~ 350 (477)
T PF11700_consen 274 F---KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR 350 (477)
T ss_pred H---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 1 1233456677778888888889999999999999977777777777788899999999999999999999998 6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHH
Q 009185 388 LLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVN 467 (541)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 467 (541)
++.++.+...+..+.-.+.... ........|. +.+..+..|.+.++..+..-++.+|+.|+++.+..+|++...+
T Consensus 351 ~l~~~l~~~~~i~~~g~~G~~~-~~~g~~~~~~----f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~g 425 (477)
T PF11700_consen 351 TLLISLILWIIIPLYGLFGFWP-SFFGLKSPWE----FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITG 425 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-cccCcccHHH----HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 7666555543322222111110 0111122233 4444555666666667788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 468 RLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
...+.+||.++|.+.+..| .+..+....++.+++.++. ..++..|+
T Consensus 426 k~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 9999999999999999887 6677777777777766665 44444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=176.66 Aligned_cols=335 Identities=11% Similarity=0.011 Sum_probs=203.8
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc----chhH-HHHHHHHHHHHHHHHHHHhccc------HHH
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC----IGRR-YTIVLAAATFLLGALLMGLAPS------FLF 160 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~a~~------~~~ 160 (541)
+..++.+.+|+++..+|.+..+.-+.-++..|+.|.++|| +||| +.++++.+..+++.+++-..++ +..
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y 111 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY 111 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3446778889999999999999999999999999999996 7975 4555677788888777665553 344
Q ss_pred HHHHHHHHhhcccccccchhhhhhhcCc-cccchhhchHhHHHHHHHHHHHHHHHhhhcCC----CCcchhHHHHHhhhH
Q 009185 161 LMAGRVVSGIGVGYSLMIAPVYTTEISP-AMTRGFLSSLPEVFINFGILLGYISNYALSGL----PEHINWRLMLGLAAL 235 (541)
Q Consensus 161 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----~~~~gwr~~f~~~~~ 235 (541)
+.+.-++..++.......-.++..|..+ +++|++..++...+..+|..+++.+...+... .+..+|+....+.++
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 5566667788888888888899999997 78999999999999999888776665443311 112468887777666
Q ss_pred HHHHHHHHHh-cCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCC
Q 009185 236 PAIAVAFGVI-AMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPS 314 (541)
Q Consensus 236 ~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (541)
++++..+..+ ..+|.++ +++ ++ .+.++.++
T Consensus 192 i~~i~~~i~~~~~kE~~~----~~~-~~-----------------------------------------~~~~~~l~--- 222 (460)
T PRK11462 192 VAFMMLAFCFFTTKERVE----APP-TT-----------------------------------------TSMREDLR--- 222 (460)
T ss_pred HHHHHHHHHHhcceeccC----CCc-cC-----------------------------------------CCHHHHHH---
Confidence 6655554433 3444321 000 00 00000000
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHH
Q 009185 315 RPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGST 394 (541)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 394 (541)
..++++.+..+....++..............|.+...+.. ...+.+.....++.+++.++++++.||+++|+....+..
T Consensus 223 ~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~ 301 (460)
T PRK11462 223 DIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNA 301 (460)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 0122233333332222232222222222233333333322 233445667778889999999999999999888765544
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC-------chhhhhhhHHHHHHH
Q 009185 395 GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP-------TKFRAQGSSLAISVN 467 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~ 467 (541)
+..+..+++.+... ...+. ... ..+..+++.....++.+++.+|..+ .+..|...+......
T Consensus 302 ~~~~~~~~~~~~~~-------~~~~~---~~~-~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~ 370 (460)
T PRK11462 302 LLAVISLAMFFVPM-------QASIT---MFV-FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL 370 (460)
T ss_pred HHHHHHHHHHHhch-------hHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence 43333332222110 00111 111 1111222333333444556666654 233355567777899
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 009185 468 RLVSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~ 487 (541)
.+|.++++.+.|.+++..|+
T Consensus 371 Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 371 KLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=162.49 Aligned_cols=339 Identities=12% Similarity=0.084 Sum_probs=247.7
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc----chh-HHHHHHHHHHHHHHHHHHHhccc------HHHHH
Q 009185 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC----IGR-RYTIVLAAATFLLGALLMGLAPS------FLFLM 162 (541)
Q Consensus 94 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Gr-r~~~~~~~~~~~i~~~~~~~a~~------~~~l~ 162 (541)
-++.+.+|+++..+|.+..+.-+--++.-|+.|.+.|| +|| |+.++.+.+-.++.+.++-.+++ ....+
T Consensus 37 ~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~ 116 (467)
T COG2211 37 FFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL 116 (467)
T ss_pred HHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH
Confidence 36778899999999999999999999999999999995 786 55677787889999988888774 45566
Q ss_pred HHHHHHhhcccccccchhhhhhhcCc-cccchhhchHhHHHHHHHHHHHHHHHhhhcC----CCCcchhHHHHHhhhHHH
Q 009185 163 AGRVVSGIGVGYSLMIAPVYTTEISP-AMTRGFLSSLPEVFINFGILLGYISNYALSG----LPEHINWRLMLGLAALPA 237 (541)
Q Consensus 163 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~~~~~gwr~~f~~~~~~~ 237 (541)
+.-.+.+++.......-.++..|..+ ++||.+..++-+.+.++|..+...+...+.. .....||+...++.++++
T Consensus 117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 67888999999999999999999995 6899999999999999997666555544432 112458998888888887
Q ss_pred HHHHHHHhc-CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCch
Q 009185 238 IAVAFGVIA-MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRP 316 (541)
Q Consensus 238 ~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (541)
++..+.+++ .+|.+. +....+ ...+.++++.+. ..
T Consensus 197 ~i~~l~~~~~v~ER~~----~~~~~~-------------------------------------~~~~~~~~~~~~---~~ 232 (467)
T COG2211 197 VILLLFCFFNVKERVV----ETQPTK-------------------------------------TGVKLKLKDSFL---LI 232 (467)
T ss_pred HHHHHHHHHHhhcccC----ccccCc-------------------------------------ccccccHHHHHH---HH
Confidence 777665544 555432 000000 001111221111 13
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
++++.+...++..++...+.........+|.+..-+.+.............+.+++.++..++.+|+|+|+++..+.++.
T Consensus 233 ~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~ 312 (467)
T COG2211 233 FKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL 312 (467)
T ss_pred HccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence 45555666666666666677767777777777776666666666677777777777999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc-------hhhhhhhHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT-------KFRAQGSSLAISVNRL 469 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~ 469 (541)
+++.+++.+.... . ...+++..+..+.......++.+++++|...- +..|...|...++.-+
T Consensus 313 ~i~~~~~~f~~~~----------~-~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~ 381 (467)
T COG2211 313 AVGYLLLYFTPAG----------S-VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL 381 (467)
T ss_pred HHHHHHHHhhcCc----------c-hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH
Confidence 9988888775411 0 11333333455556666678888998888643 3458889999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 009185 470 VSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 470 ~~~~~~~~~~~~~~~~g~ 487 (541)
|.+++..+.|++++..||
T Consensus 382 g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 382 GLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999988775
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-19 Score=175.76 Aligned_cols=306 Identities=14% Similarity=0.118 Sum_probs=229.0
Q ss_pred HHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 009185 71 GAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL 150 (541)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 150 (541)
.++++++..+.+++..+.+...+..+.+.|+++.++.|++.+.+-++..+...+..+.+-|.-|-|++-.|+++++++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 33556666677777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--------------------c-----------------------------c--HH-HHHHHHHHHhhcccccccc
Q 009185 151 LMGLA--------------------P-----------------------------S--FL-FLMAGRVVSGIGVGYSLMI 178 (541)
Q Consensus 151 ~~~~a--------------------~-----------------------------~--~~-~l~~~r~l~G~~~g~~~~~ 178 (541)
++++- + + ++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 99861 0 0 23 5667799999999999999
Q ss_pred hhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc----------------hhHHHHHhhhHHHHHHHH
Q 009185 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI----------------NWRLMLGLAALPAIAVAF 242 (541)
Q Consensus 179 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~----------------gwr~~f~~~~~~~~~~~~ 242 (541)
+.+|+-|...+++-...+|++.....+|.++|.++++++.++..+. -|..-|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987632111 166677777888888888
Q ss_pred HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHH
Q 009185 243 GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILI 322 (541)
Q Consensus 243 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
.++++|...+. ..++.++++ .+....+++ ............++.++..++.++++.+
T Consensus 338 p~f~fPk~lp~---~~~~~~~~~-~~~~k~~~~-------------------~~~~~~~~~~~ikdfp~s~~~ll~N~if 394 (735)
T KOG3626|consen 338 PLFFFPKELPK---SQKRKRARD-LHVLKTESG-------------------GAKSDKTFGKKIKDFPKSIKRLLSNPIF 394 (735)
T ss_pred HHHhCcccCcc---ccccchhhh-hcccccccc-------------------cccCCcchhhhHHHHHHHHHHHhcCchH
Confidence 88888866431 111000000 000000000 0001111122345555555678889999
Q ss_pred HHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcCC--chHHHHhHHHHHHH
Q 009185 323 AAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVI-MGIAKTSFVLISALYLDHFGR--RPLLMLGSTGMAVS 399 (541)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~ 399 (541)
....+...+....+.++.+|+|.|++...+.++..+..++.. ...+..+|.+++|++.+|+.. |....+..+...+.
T Consensus 395 ~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 395 MLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887777756544 445566788999999999864 44443333333333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=158.23 Aligned_cols=353 Identities=14% Similarity=0.105 Sum_probs=245.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhccchh-HHHHHHHHHHHHHHHHHHHhccc--H-HHHHHHHHHHhhcccccccchh
Q 009185 105 IQVEVLVGSLNVCSLIGSLAAGKTSDCIGR-RYTIVLAAATFLLGALLMGLAPS--F-LFLMAGRVVSGIGVGYSLMIAP 180 (541)
Q Consensus 105 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~a~~--~-~~l~~~r~l~G~~~g~~~~~~~ 180 (541)
+..+...++..+..++..|+.|.++|+.|+ |+.+-....+..+++.+..++++ + +..++.-.+..++.....+.-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 456788888899999999999999999995 55566666666777777777765 4 4455557888999999999999
Q ss_pred hhhhhcCccccchhhchHhHHHHHHHHHHHHHHHh--hhcC-------------CCCcchhHHHHHhhhHHHHHHHH-HH
Q 009185 181 VYTTEISPAMTRGFLSSLPEVFINFGILLGYISNY--ALSG-------------LPEHINWRLMLGLAALPAIAVAF-GV 244 (541)
Q Consensus 181 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~--~l~~-------------~~~~~gwr~~f~~~~~~~~~~~~-~~ 244 (541)
+++.+..++++-++..++-.....+|+.+.-++.. .... ..+...=|..+.+.++.-++..+ .+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 99999999988888877766666666655544331 1110 01334568888887777666665 44
Q ss_pred hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHH
Q 009185 245 IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAA 324 (541)
Q Consensus 245 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+..++.++-. ....+..+.. .++...+ ++ ...+++.+..
T Consensus 218 ~~v~~~~~~~--~~~~~~l~~g--------------~k~L~~t------------------~k-------~i~~~~~i~~ 256 (438)
T COG2270 218 LNVHDAEKIS--SPPPTALRNG--------------FKELKST------------------FK-------EIRGRKNLVL 256 (438)
T ss_pred hccccccccc--ccchHHHHHH--------------HHHHHHH------------------HH-------HHhcccchHH
Confidence 5566554300 0000111111 1111111 11 1233445666
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLG 404 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 404 (541)
+.+..+++.-+..++......|-....+.+..+...+.....+.+++|+++.|++.||+|.|+++.++.++..+.++...
T Consensus 257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 67777777788888888888898877777888888888889999999999999999999999988888877776665554
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 405 LGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
+.... . ...+.....+.+.++.....-++..+.+|+++.+...|+++..++....++|...+.+.+.
T Consensus 337 ~~~~~---------~----~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 337 FLEGE---------L----DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred Hcccc---------H----HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 43221 1 3444555666666677778889999999999999999999999999999999999999988
Q ss_pred hcc-hhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 485 VTF-GGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 485 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.|- +..+..+.++.+++.++ +...|..
T Consensus 404 Tg~~r~g~~~i~vll~iGl~~-L~~v~~~ 431 (438)
T COG2270 404 TGSSRAGVLSIIVLLLIGLLL-LLRVKVP 431 (438)
T ss_pred hcchhhHHHHHHHHHHhhHhh-EEeecCC
Confidence 774 33444444444444443 3444444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-17 Score=153.89 Aligned_cols=406 Identities=16% Similarity=0.109 Sum_probs=255.8
Q ss_pred hhhhHHHHhhhcC----CChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhcc--cHHHH
Q 009185 89 MSGAILYIRDNLN----ITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAP--SFLFL 161 (541)
Q Consensus 89 ~~~~~~~i~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l 161 (541)
-.++.-++..+++ .+++++.-+.+.|..-.-+..+++|+++||+ |+|+.++.|.++..+|-++.+.+. +...+
T Consensus 41 raiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl 120 (498)
T COG3104 41 RAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGL 120 (498)
T ss_pred HHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 3444456777776 9999998889998888888999999999995 999999999999999999999984 78899
Q ss_pred HHHHHHHhhcccccccchhhhhhhcCccc--cchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 162 MAGRVVSGIGVGYSLMIAPVYTTEISPAM--TRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 162 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
+++-++.++|.|..-+....++.|.+|++ +|-..++++.++.++|+.++|++.+++. +++||...|.+.++-..+
T Consensus 121 ~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~---~~~g~~~gF~~aavGm~~ 197 (498)
T COG3104 121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA---INYGWHVGFGLAAVGMII 197 (498)
T ss_pred HHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999753 5778899999999999999999999999 899999999987777666
Q ss_pred HHHHHhcCCCChHHHHhcCC-----hHHHHHHH----HHhcCC---hhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhH
Q 009185 240 VAFGVIAMPESPRWLVMKGR-----FADAKQAL----IKTSDS---VEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWK 307 (541)
Q Consensus 240 ~~~~~~~~~e~p~~~~~~~~-----~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (541)
.++.+++.+..-.....+++ ........ ...... ..................... ....
T Consensus 198 gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~---------~~~~ 268 (498)
T COG3104 198 GLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAI---------IYFA 268 (498)
T ss_pred HHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 66555443321100000000 00000000 000000 000000000000000000000 0000
Q ss_pred HhhcCCC------c-hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 009185 308 ELLLRPS------R-PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYL 380 (541)
Q Consensus 308 ~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 380 (541)
+.++.+. + ...-+.+....+.+.++.-....+..|.....+.....-........++..+.-++..++..++.
T Consensus 269 ~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~ 348 (498)
T COG3104 269 EAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALW 348 (498)
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHH
Confidence 0011000 0 01122233333333344444445555555554443111223334477888888888888888888
Q ss_pred hhcCCc-------hHHHHhHHHHHHHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC
Q 009185 381 DHFGRR-------PLLMLGSTGMAVSLAVLGLGSKYLDQ-SDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP 452 (541)
Q Consensus 381 d~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 452 (541)
.|.+++ .-+-++..++..+++++......... ....+ ...++...++..+.-....|+..+++....|
T Consensus 349 ~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s----~~~lil~y~l~s~gEL~iSpvGLs~~t~laP 424 (498)
T COG3104 349 TKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVS----VWWLVLSYVLQSFGELFISPVGLSMVTKLAP 424 (498)
T ss_pred hHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcC----HHHHHHHHHHHHHHHHHhCHHHHHHHHHhCh
Confidence 774432 23557777777777777766333221 22122 2244555556666777777888999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 453 TKFRAQGSSLAISVNRLVSGIVAMSFLS------ISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 453 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
+...+..++........+..++..+.+. ..+.......|..++.+.++..+......|
T Consensus 425 ~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 425 PALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999888888887777776662 333444556677777776666665544433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-20 Score=187.05 Aligned_cols=394 Identities=15% Similarity=0.105 Sum_probs=3.0
Q ss_pred HHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 74 LASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
++++..+......+.+...+..+++.|+++.++.|++.+.+-++..+..++..++++|..|-|++-.|.+++++|+++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 33444455566667788888999999999999999999999999999999999999999999999999999999999987
Q ss_pred hc------------c--------------------------------------cHHHHHHHHHHHhhcccccccchhhhh
Q 009185 154 LA------------P--------------------------------------SFLFLMAGRVVSGIGVGYSLMIAPVYT 183 (541)
Q Consensus 154 ~a------------~--------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i 183 (541)
+= . -+..++++.++.|+|....++.+.+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 50 0 146678889999999999999999999
Q ss_pred hhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCC---------------Cc---ch-hHHHHHhhhHHHHHHHHHH
Q 009185 184 TEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLP---------------EH---IN-WRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 184 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------~~---~g-wr~~f~~~~~~~~~~~~~~ 244 (541)
-|..++++-+..+|++.+...+|.++|.++++.+.++. ++ .| |-.-|++.+++.++..+.+
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887521 01 11 5555666666666666666
Q ss_pred hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHH
Q 009185 245 IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAA 324 (541)
Q Consensus 245 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+++|+.-+.. ++..++.+...++..+...+. ..............++.++..++.+++|.+..
T Consensus 247 ~~FPk~lp~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~ 309 (539)
T PF03137_consen 247 FFFPKKLPGT--SERQEEKESSERKEEDSDKDS---------------FKDPKSKKSFGKSIKDFPKALKRLLTNPVFMC 309 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCccCCCc--ccccchhhhhhcchhhhhhhc---------------ccccccccchhhhhhhHHHHHHHHhcChHHHH
Confidence 6777653211 000000000000000000000 00000001123346677777778899999999
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhcCC--chHHHHhHHHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIM-GIAKTSFVLISALYLDHFGR--RPLLMLGSTGMAVSLA 401 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~ 401 (541)
..+..........++.++.|.|++...+.++..+..+.... ..+.++|.+++|++.+|++- |..+....+...++.+
T Consensus 310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887776666555443 34677889999999999853 4444443333333333
Q ss_pred H---HHHH-----------hhhc----CCCC-C----------------------ch-hHHHHHHHHHHHHHHHHHhccc
Q 009185 402 V---LGLG-----------SKYL----DQSD-I----------------------KP-AWAIALCVIAVCAAVSFFSIGL 439 (541)
Q Consensus 402 ~---~~~~-----------~~~~----~~~~-~----------------------~~-~~~~~~~~~~~~~~~~~~~~~~ 439 (541)
+ +.+. ..+. .... + .. .......++..++...+.....
T Consensus 390 ~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~ 469 (539)
T PF03137_consen 390 LYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQ 469 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcc
Confidence 2 1110 0010 0000 0 00 0111222222233333333344
Q ss_pred cccceeeecccCCchhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 009185 440 GPITWVYSSEIFPTKFRAQGSSLAISVNRL-VSGIVAMSFLSISRAV 485 (541)
Q Consensus 440 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 485 (541)
.|.. ...-..+|+++|+.+.|+...+.++ |..-+|.++|.+.|..
T Consensus 470 ~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 470 VPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------
T ss_pred cchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 4554 4456778999999999999888766 5577999999999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=161.68 Aligned_cols=395 Identities=15% Similarity=0.159 Sum_probs=232.9
Q ss_pred HHHHhhhhhhcccchhhhhH-HHHhh-hcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchh-HHHHHHHHHHHHHHHH
Q 009185 74 LASTNSILLGYDIGVMSGAI-LYIRD-NLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGR-RYTIVLAAATFLLGAL 150 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~ 150 (541)
+..+.+++.....+++.+.. |++++ |.+.+.+..||+.++..++.+++++.+|++..|.|. |+.++.|.++..+|.+
T Consensus 38 l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 38 LALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 33444466666665555444 55544 577888999999999999999999999999999996 8899999999999999
Q ss_pred HH-Hhc---c-cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc--
Q 009185 151 LM-GLA---P-SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-- 223 (541)
Q Consensus 151 ~~-~~a---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-- 223 (541)
+. ++. + ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++.++..+.+.
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 98 432 3 67889999999999987 6678899999999999999999999999999999999999888754321
Q ss_pred -----ch---hHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhh
Q 009185 224 -----IN---WRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHA 294 (541)
Q Consensus 224 -----~g---wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (541)
.. +-.+-|+.+++.++..+ +.++++|.++.- ..++.++. ++. +.+
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~----~~~~~~~~-~~~---~~~------------------ 250 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI----IDKKKRSV-EEE---KSD------------------ 250 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc----cccccccc-hhh---ccc------------------
Confidence 11 23355666666666554 445577765411 11100000 000 000
Q ss_pred hccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHH-hhcCCCCchhhHHHHHHHHHHHHHHH
Q 009185 295 ASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVF-KDAGINSKKQLVGVTVIMGIAKTSFV 373 (541)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (541)
.+..+ ...+.....+.+.+..+.....+..+....+.+. ...+...............+.+++..
T Consensus 251 ------------~~~~~--~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~ 316 (488)
T KOG2325|consen 251 ------------IEKVK--KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSV 316 (488)
T ss_pred ------------hhhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHH
Confidence 00000 1123334444455555555555555444333333 33333333333323333333333333
Q ss_pred ---HHHHHHH-hhcCCchHHHHhHHHHHHHHHHHHHHhhhcC-C----C----C---CchhHH-------HHHHHHHHHH
Q 009185 374 ---LISALYL-DHFGRRPLLMLGSTGMAVSLAVLGLGSKYLD-Q----S----D---IKPAWA-------IALCVIAVCA 430 (541)
Q Consensus 374 ---~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~----~---~~~~~~-------~~~~~~~~~~ 430 (541)
+...+.. .++.+|+.+..++.....+..+......+.. + . . ....|- .+..++...+
T Consensus 317 ~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~ 396 (488)
T KOG2325|consen 317 ILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIV 396 (488)
T ss_pred HHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhh
Confidence 3333322 2333455555553333333333222111111 0 0 0 000010 0111111111
Q ss_pred HHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 431 AVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
..|...-.......+.-+|...+..++++.|++......+..++|.+........|++..+.+.....++...+...+.
T Consensus 397 ~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 397 VFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL 475 (488)
T ss_pred eeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111223355578889999999999999999999999999999999999988777776666555554443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=155.98 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=138.9
Q ss_pred hhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH---HHhcccHHHHHHH
Q 009185 89 MSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL---MGLAPSFLFLMAG 164 (541)
Q Consensus 89 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~a~~~~~l~~~ 164 (541)
....+|. +.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445554 45678998888888888889999999999999999999999998887654443332 2234567888889
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc-chhHHHHHhhhHHHHHHHHH
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-INWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-~gwr~~f~~~~~~~~~~~~~ 243 (541)
|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++. +. .+|+.++++..+++++.++.
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~---~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV---ESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchHHHHHHHHHHHHHHHH
Confidence 999998877777777888899999999999999744444555677888888776 33 35788777767777777677
Q ss_pred HhcCCCChHHHHhc-----CChHHHHHHHHHhc
Q 009185 244 VIAMPESPRWLVMK-----GRFADAKQALIKTS 271 (541)
Q Consensus 244 ~~~~~e~p~~~~~~-----~~~~~~~~~~~~~~ 271 (541)
.+++||+|+|+..+ ++.+++++.+.+.+
T Consensus 426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 77789999987754 78888888887775
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-14 Score=128.44 Aligned_cols=332 Identities=15% Similarity=0.093 Sum_probs=211.9
Q ss_pred HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccch-----hHHHH-HHHHHHHHHHHHHHHhc-----c-------c
Q 009185 96 IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG-----RRYTI-VLAAATFLLGALLMGLA-----P-------S 157 (541)
Q Consensus 96 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~-~~~~~~~~i~~~~~~~a-----~-------~ 157 (541)
+..|++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+ ..|.++...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 557899999888988888877654 6889999999998 66554 45666666666665543 2 2
Q ss_pred H--H--HHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchh-HHHHHh
Q 009185 158 F--L--FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINW-RLMLGL 232 (541)
Q Consensus 158 ~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gw-r~~f~~ 232 (541)
. + ...+.-.+.|+|.+...+...++++|..|+++|+++.++...+.-+|.+++..+.+.+. +.++- |..-.+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL---~~~s~~rL~~v~ 161 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL---DPFSPERLIQVI 161 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc---cccCHHHHHHHH
Confidence 2 2 23444678899999999999999999999999999999999999999999999999888 44443 222222
Q ss_pred h--hHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhh
Q 009185 233 A--ALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELL 310 (541)
Q Consensus 233 ~--~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (541)
. ++..++..++..+-.|.+. .+.. ....+ ++......+++..
T Consensus 162 ~~~a~i~~~l~~ia~wg~E~r~-------~~~~----~~~~~-------------------------~~~~f~~a~~~~~ 205 (403)
T PF03209_consen 162 QGVALIALLLNLIALWGQEPRR-------SRRA----AAAER-------------------------PRPPFREAWRQVW 205 (403)
T ss_pred HHHHHHHHHHHHHHHHhcccCC-------cccc----cCCCC-------------------------CCccHHHHHHHHH
Confidence 2 2222222222233223211 0000 00000 0000111122222
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-hcCCchHH
Q 009185 311 LRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLD-HFGRRPLL 389 (541)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~ 389 (541)
.+ +-.++.+..+.+..+ +++.--..+-.|-.+..+.+..+...+......+.+++-.+.|++.. |.++++..
T Consensus 206 ~~---~~a~~f~~fl~l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a 278 (403)
T PF03209_consen 206 AS---PQARRFFVFLFLGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTA 278 (403)
T ss_pred hC---CChhHHHHHHHHHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 21 111222222222222 22222222333444555667777777888999999999999998876 67778888
Q ss_pred HHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHH
Q 009185 390 MLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRL 469 (541)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 469 (541)
.+++...++++.++.+..... +.|.....++.+.+..|.+..+ ..+...+..+++..|..+|.......+
T Consensus 279 ~~G~~~~~~~f~lii~a~~~~------~~~~~~~~~~l~G~g~G~f~vg----als~mM~lt~~~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 279 ALGCLLGALAFALIILAGPLG------SPWLFRPGVFLLGLGNGLFTVG----ALSLMMDLTSAGRAGLFMGAWGAAQAI 348 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHhhhHHHHH----HHHHHHhCCCCcchhHHHHHHHHHHHH
Confidence 888888888888777655432 2344444445555555555543 334456777778899999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 009185 470 VSGIVAMSFLSISRA 484 (541)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (541)
...++..+.|.+.|.
T Consensus 349 A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 349 ARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-14 Score=134.78 Aligned_cols=354 Identities=17% Similarity=0.172 Sum_probs=230.4
Q ss_pred HhhhhhhcccchhhhhHHHHhhhcCCChh-HHHHHHHHH----HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH
Q 009185 77 TNSILLGYDIGVMSGAILYIRDNLNITSI-QVEVLVGSL----NVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL 151 (541)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~ 151 (541)
+-.+..++......+..+...+.++-+.. ..+...... .+...+..+..|.++||+|||..+...++...+..++
T Consensus 29 l~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~ 108 (463)
T KOG2816|consen 29 LYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALC 108 (463)
T ss_pred HHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHH
Confidence 33344455555555666666666554332 233333333 6778899999999999999999999999999998888
Q ss_pred HHhcccHHHHHHHHHHHhhc--ccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHH
Q 009185 152 MGLAPSFLFLMAGRVVSGIG--VGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLM 229 (541)
Q Consensus 152 ~~~a~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~ 229 (541)
..+.. +|.++ +.|+. .+.......++++|....++|....++.......+..++|.+++.+. ...|.-.+
T Consensus 109 ~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~---~~~~~a~~ 180 (463)
T KOG2816|consen 109 LLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV---KFLGIALV 180 (463)
T ss_pred HHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhcCchHH
Confidence 88866 44444 33333 23466778889999999999999999999999999999999999998 67788888
Q ss_pred HHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHH
Q 009185 230 LGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKE 308 (541)
Q Consensus 230 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (541)
|.+..+..++..+ ..+++||+-.. ++.++ ....+..... ...+.....++.
T Consensus 181 f~ia~~~~~~~~~y~~~~l~Esl~~----~~~~~--~~~~~~~~~~----------------------~~~~~~~~~~~~ 232 (463)
T KOG2816|consen 181 FLIAAASGILSLLYMLLFLPESLQE----KERSD--ATLRELTPGS----------------------LDSSHVADAFQS 232 (463)
T ss_pred HHHHHHHHHHHHHHHhhccccccCc----ccccc--ccccccCCCc----------------------ccchhhhhhhhh
Confidence 9887777777665 55668887431 11110 0000000000 000000001111
Q ss_pred hhcCCCchhHHHHHHHHHHHHH-HHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHH-HHHhhcCCc
Q 009185 309 LLLRPSRPLRRILIAAIGVNFF-MQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISA-LYLDHFGRR 386 (541)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~ 386 (541)
..+ .-.+|..+.+++..+ ..........-..+.|+....+.+....+.+.+...+...++..+.. .+...++.|
T Consensus 233 ~~~----~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~ 308 (463)
T KOG2816|consen 233 LTK----VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK 308 (463)
T ss_pred hcc----cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 111222222222222 22222222221334566666677777777777777888888887776 777888988
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV 466 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 466 (541)
+....|...-.+....+++.... |. .........+.....|...+.++....++.+|++.++...+
T Consensus 309 ~~i~lGl~~~~~~~~~~af~~~~---------w~-----~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 309 RLISLGLLSEFLQLLLFAFATET---------WM-----MFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred hHhhHHHHHHHHHHHHHHHhccc---------hh-----hhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 88888888888888888886554 22 11122223334444566778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 009185 467 NRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ 484 (541)
..+.+.++|.+.+.+...
T Consensus 375 ~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 375 EGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHhhhhhHHHHHHHHHH
Confidence 999999999999988653
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=124.31 Aligned_cols=136 Identities=24% Similarity=0.404 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccc
Q 009185 111 VGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAM 190 (541)
Q Consensus 111 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 190 (541)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH-hcCCC
Q 009185 191 TRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV-IAMPE 249 (541)
Q Consensus 191 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e 249 (541)
+|++..++......+|..+++.+.+.+. +..+|++.|++.++..++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLA---QFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHh---cccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999998 77899999998777766655544 44554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=138.21 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=131.0
Q ss_pred hhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009185 91 GAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSG 169 (541)
Q Consensus 91 ~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G 169 (541)
...| ++++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+......++++.+.+++.+++.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455 566789999999999988888888889999999999999999888887776666555566788888888999998
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCC
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPE 249 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 249 (541)
++.|...+....+..|.+|+ +|++++++++....+|..+++.+++.+. +..||+..|++.+++.++.++..+++||
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA---EIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887777778888999875 6999999999999999999999999998 7789999999888888887777766665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=134.00 Aligned_cols=356 Identities=16% Similarity=0.116 Sum_probs=205.8
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccch-----hHHHHHHHHHHHHHHHHHHHhcc----cHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG-----RRYTIVLAAATFLLGALLMGLAP----SFL 159 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~a~----~~~ 159 (541)
..+..|.+.+++|+++++...+.+...+...+ -++.|.++|.+. ||+.++++.++..++.+..+..+ +..
T Consensus 9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 34567789999999999999988888887765 467799999863 66667777777766666665543 567
Q ss_pred HHHHHHHHHhhcccccccchhhhhhhcCc--cccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHH
Q 009185 160 FLMAGRVVSGIGVGYSLMIAPVYTTEISP--AMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPA 237 (541)
Q Consensus 160 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~ 237 (541)
...+.-++..+|.+....++-+++.|... ++.||...+.......+|.+++..++|.+. +..++|+.|.+.+++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~---~~~~~~~~f~i~~~~~ 164 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL---DSFGPQGVFLISAALP 164 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh---hcCCCeEEehHHHHHH
Confidence 77777888999999999999999999983 344778888888899999999999999998 7889999998876666
Q ss_pred HHHHHHHh-cCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCch
Q 009185 238 IAVAFGVI-AMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRP 316 (541)
Q Consensus 238 ~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (541)
++..+..+ +.+|.++ +..+......+... +..... .++.....++.
T Consensus 165 ~l~~~~~~~~~~e~~~------~~~~~~~~~~~~~~--~~~~~~-------------------------~~~~~~~l~~~ 211 (433)
T PF03092_consen 165 LLMLIVALFLLEERKV------RPADEVFSFGKEEV--PCLFGS-------------------------FREQLSELWRA 211 (433)
T ss_pred HHHHHHHHHhhhhccc------cccchhhccccccc--chhhHH-------------------------HHHHHHHHHHH
Confidence 65554444 3444110 00000000000000 000000 01111111123
Q ss_pred hHHHHHHHHHH-HHHHHhhhh---hh-HhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 009185 317 LRRILIAAIGV-NFFMQASGN---DA-VVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391 (541)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 391 (541)
++.+.++...+ ..++..... .+ ..++....+. ..+.++...+.+..+..++.++|..+......+..-|+++..
T Consensus 212 ~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~-gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~ 290 (433)
T PF03092_consen 212 LQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG-GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVV 290 (433)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44444443333 222111111 11 1122211111 112344445545555666666666666666555665666655
Q ss_pred hHHHHHHHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHH
Q 009185 392 GSTGMAVSLAVLGLGSKYLDQ-SDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLV 470 (541)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 470 (541)
..++.++..+.-......++. -.....+. .+.-..+..........|.. ..++|+.|+..-|+.+++...+.++|
T Consensus 291 t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f---~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg 366 (433)
T PF03092_consen 291 TTLVSVLASLFDLLLVTRWNLDLGIPDQWF---ALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLG 366 (433)
T ss_pred HHHHHHHHhcccEEEEEEEeeeeCcCCeEE---EEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 544443332221111000000 00000011 11111111122222222433 56789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 009185 471 SGIVAMSFLSISRAVT 486 (541)
Q Consensus 471 ~~~~~~~~~~~~~~~g 486 (541)
..++..+...+.+..+
T Consensus 367 ~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 367 SSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999998887666
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=142.90 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=128.5
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccccccc
Q 009185 98 DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLM 177 (541)
Q Consensus 98 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 177 (541)
.+.+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+...+
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34466777899999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred chhhhhhhcCccccchhhchH-hHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-HHhcCCCC
Q 009185 178 IAPVYTTEISPAMTRGFLSSL-PEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF-GVIAMPES 250 (541)
Q Consensus 178 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~ 250 (541)
....++.|.+|++.|+...+. ++....+|.++++.+.+++. +..|||..|.+.+++.++..+ ..++++++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~---~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY---DSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888999999999999887665 67778999999999999998 778999999987766655444 33344443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-14 Score=144.11 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcC
Q 009185 108 EVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEIS 187 (541)
Q Consensus 108 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 187 (541)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455667889999999999999999999999999999999999999999888999999999988889999999999999
Q ss_pred ccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCCh
Q 009185 188 PAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESP 251 (541)
Q Consensus 188 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p 251 (541)
|.++|++++|+..+...+|.++||++++.+. + .+...+|++.+++.++..++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~---~-~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV---G-ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998876 3 3456778887777777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=117.85 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=153.7
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVS 168 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 168 (541)
.+|..-.+-+++|.+..|++.+...-+....+..++.|.++||+|||+.-++..++.+++++.. ..+|++.++++|++.
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlg 131 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLG 131 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHH
Confidence 4555555567899999999999999999999999999999999999999999999999999754 458999999999999
Q ss_pred hhcccccccchhhh-hhhcC----ccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCcc--hhHHHHHhhhHHHHHH
Q 009185 169 GIGVGYSLMIAPVY-TTEIS----PAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEHI--NWRLMLGLAALPAIAV 240 (541)
Q Consensus 169 G~~~g~~~~~~~~~-i~~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~~--gwr~~f~~~~~~~~~~ 240 (541)
|++....+.+--++ +.|+- |++..+..++... ..+++-.+++.+++-.+. +.. |-..+|....++.++.
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~---~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLA---DWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH---HHhCCCCcchHHHHHHHHHHH
Confidence 99999988888775 45542 2222222222222 122333344444554544 333 3477888877666665
Q ss_pred HHHH-hcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHH
Q 009185 241 AFGV-IAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRR 319 (541)
Q Consensus 241 ~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (541)
.+.. ...+|.+.. ..+..+..+.. .+ .++ ...++
T Consensus 209 ~~~I~~~W~ENyg~---~~~~~~~~~~~--------------~~---------------------a~~-------~i~~d 243 (354)
T PF05631_consen 209 AVLILKTWPENYGD---TSSSSSLSGSF--------------RE---------------------AWR-------AILSD 243 (354)
T ss_pred HHHHHhcccccCCC---cccccchHHHH--------------HH---------------------HHH-------HHHcC
Confidence 5543 345554320 00000000000 00 001 12234
Q ss_pred HHHHHHHHHHHHH-hhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 320 ILIAAIGVNFFMQ-ASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF 383 (541)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 383 (541)
+.++.+.+...+. ...+..+..|.|..- ........|.++..+.++.++|+.+..++..+-
T Consensus 244 ~ril~LG~~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 244 PRILLLGLIQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred chhHHHHHHHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555544444 444445556777665 222334567788888899999998887665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=132.54 Aligned_cols=178 Identities=11% Similarity=0.064 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
.++.+.+..++...+.+....++|.++++..+.+....++..+...++.+++.+..|+++||+|||+.+.++.++..++.
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 35566667777778888888899999987767788888888888899999999999999999999999988888887777
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
+++.+.... +. . +......+.......+...++..|..|++.|+++.|+.+...++|..++|.+.+.
T Consensus 88 ~~~~~~~~~---------~~---~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 88 IAIPLVNNV---------TL---V-VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHHhHH---------HH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654332 11 1 1111122222223345667788899999999999999999999999999999998
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 481 ISRAVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 481 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+.+ .+|+..|.+.+++.++..+...++.++.
T Consensus 155 l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 155 LVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 774 6888899888777777655555555444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-14 Score=135.67 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=128.9
Q ss_pred hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHH
Q 009185 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF--LFLMAGRVV 167 (541)
Q Consensus 90 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~--~~l~~~r~l 167 (541)
....+.+.++++.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.++.+++.++..+.++. ..+++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 344555668899999999999999999999999999999999999999999999999998888877643 335566788
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHH
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAV 240 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~ 240 (541)
.|++.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+. +..||++.|++.+++.++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL---TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH---hhhchhhHHHHHHHHHHHh
Confidence 899888888888899999999999999999999999999999999999998 7889999998877666654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=137.11 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=129.9
Q ss_pred hhHHHHhhhcCCC--------hhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc----cH
Q 009185 91 GAILYIRDNLNIT--------SIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP----SF 158 (541)
Q Consensus 91 ~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~----~~ 158 (541)
...+...++.|.+ .+..+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 4445445566644 36679999999999999999999999999999999999999998877776642 24
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCc---chhHHHHHhhh
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEH---INWRLMLGLAA 234 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~---~gwr~~f~~~~ 234 (541)
+.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|.++||++++.+.+.... +||+..|.+.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667788999999999888898999999999999999999997 67899999999999999832111 57999999877
Q ss_pred HHHHHHHH-HHhcCCCC
Q 009185 235 LPAIAVAF-GVIAMPES 250 (541)
Q Consensus 235 ~~~~~~~~-~~~~~~e~ 250 (541)
++.++..+ ..++++|+
T Consensus 389 ~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 77665544 44557776
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=126.49 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=158.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
.+|.+.+..+.+.+...+..--.+..-.|.+.++.+ .+..+.+.+.+.+.+...++-++.|.++||.+.|+.+.++.++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 466677777778888888888888888898888876 6788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
+++..+++++.... ..+.++....+.+...-.|.....+..-+|+++||+..++.|+..++|+++.|
T Consensus 104 sai~nil~Gfs~s~-------------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~ 170 (448)
T COG2271 104 SAIVNILFGFSPSL-------------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAP 170 (448)
T ss_pred HHHHHHHHhhhhHH-------------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHH
Confidence 99999999885543 25566666677777777777778889999999999999999999999999999
Q ss_pred HHH--HHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 476 MSF--LSISRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 476 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
++. +.+..+.+|+..|++-++++++..++.++..+++.
T Consensus 171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999 88888889999999999999998888877777653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=131.00 Aligned_cols=164 Identities=23% Similarity=0.358 Sum_probs=146.0
Q ss_pred hhhcccchhhhhHHHHhhhc-CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHH-HHHHHHHHHHHHHHHHHhcccH
Q 009185 81 LLGYDIGVMSGAILYIRDNL-NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRY-TIVLAAATFLLGALLMGLAPSF 158 (541)
Q Consensus 81 ~~~~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~a~~~ 158 (541)
.............|.+.++. |.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 33344455556666655554 899999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
+.+++..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+. +..+|++.+++.+++.+
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~---~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL---DTGGYGGVFLILAALAL 342 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 78899999999888888
Q ss_pred HHHHHHhcC
Q 009185 239 AVAFGVIAM 247 (541)
Q Consensus 239 ~~~~~~~~~ 247 (541)
+..+..+++
T Consensus 343 i~~i~~~~~ 351 (352)
T cd06174 343 LAALLLLLL 351 (352)
T ss_pred HHHHHheec
Confidence 776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=133.16 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=131.7
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVS 168 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 168 (541)
.....+.+.++.|. .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+|.+.+++.+++.
T Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (399)
T PRK05122 235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT 312 (399)
T ss_pred HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444544455565 3456777888899999999999999999999999999999999988888889998899999999
Q ss_pred hhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCC
Q 009185 169 GIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMP 248 (541)
Q Consensus 169 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 248 (541)
|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+. +..||++.|++.+++.++..+..++++
T Consensus 313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA---SWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999888888888889999999999999999999999999998999888 778999999998777777666555554
Q ss_pred CC
Q 009185 249 ES 250 (541)
Q Consensus 249 e~ 250 (541)
++
T Consensus 390 ~~ 391 (399)
T PRK05122 390 RR 391 (399)
T ss_pred cc
Confidence 43
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-13 Score=131.49 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
.+++.++...+.++..+.....+..+.|.+.++.+. +..+.+.+.+...++..++.++.|++.||+|||+.+.++.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 344555555566666666566777888999888655 5667777888999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+++.+++.+.... + .+.+..+..++......+....++.|.+|+++|++++|+.+....+|+.+++.
T Consensus 99 ~~~~~~~~~~~~~---------~----~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 165 (434)
T PRK11663 99 GIINILFGFSSSL---------W----AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL 165 (434)
T ss_pred HHHHHHHHHHhHH---------H----HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777664332 1 12222223333333344666678899999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 477 SFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+.+.+.+..||++.|.+.+++.++..++..++++++
T Consensus 166 ~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 166 VVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999888877665555544555543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=130.11 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=129.8
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccc
Q 009185 95 YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGY 174 (541)
Q Consensus 95 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~ 174 (541)
.+.+++|.++.+.+++.+...+...++.++.|++.||+|||+++..+.++..+..+...+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999998888777888899999999999999999888887777766666778888888899999999998
Q ss_pred cccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCC
Q 009185 175 SLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPE 249 (541)
Q Consensus 175 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 249 (541)
..+....++.|..|+ +++++++++.....+|..++|.+++.+. +..||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA---ERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888899998875 5679999999999999999999999998 7789999999988887777766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=128.22 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
.+++.+....+.+++.......+....|.+.++. +.+..+.+...+...++..++.+..|++.||+|||+.+..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL-GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 3455566666666666666677777777554544 556777887889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
.++..+..+.... + .+.+.-+..+++.....|....++.|.+|+++|+.++|+.+....+|..+++.
T Consensus 84 ~~~~~~~~~~~~~---------~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 84 GIASTATMFATGP---------E----SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHHhcCH---------H----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877664332 1 23333344455555555776778899999999999999999999999999999
Q ss_pred HHHHHHH------hhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 477 SFLSISR------AVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 477 ~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
+.+.+.+ ..||++.|.+.++..++..++.++++||+++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9998864 3589999999888877766666677777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=132.06 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=131.3
Q ss_pred hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009185 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSG 169 (541)
Q Consensus 90 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G 169 (541)
....|.+.++.|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+.-++.|
T Consensus 240 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 240 LNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34467777888999999999999999999999999999999999999999888888888777788888888888889999
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCc-chhHHHHHhhhHHHHHHHHHHhcC
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEH-INWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
++.++..+...+++.|.+|+++|++..++.+....+|..+||.+++.+. ++ .+|...++..+...++..+..+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLL---ALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhh---ccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888889999999999999999999999999999999999999987 44 356666666665555555544443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-12 Score=118.02 Aligned_cols=292 Identities=12% Similarity=0.068 Sum_probs=192.0
Q ss_pred hhhHHHHhhh-cCCChhHHH-HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 90 SGAILYIRDN-LNITSIQVE-VLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 90 ~~~~~~i~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
+.+.|++.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++...+-+..++
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~ 103 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF 103 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 3445566665 789888775 45556666778888899999999999999999999999999999999999999999999
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcC
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
-|++.+. ..+-++++-...++++-.++.+...++.-+|..++.++|-.+... +..+.+....+......+.++..+++
T Consensus 104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999874 677789999999999999999999999999999888888877622 24456777666655555666666778
Q ss_pred CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHH
Q 009185 248 PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGV 327 (541)
Q Consensus 248 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (541)
|..++....+++.++... ..+.+.+..+...... .+..+............++.+.+..+..++++.++...+
T Consensus 182 P~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSl 254 (412)
T PF01770_consen 182 PMPKRSLFFHRKPPAEQD-ANESESDKMNESPESS------SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSL 254 (412)
T ss_pred CCCCcccceeccCccccc-cccccccccccccccc------cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 876654333322211111 0000000000000000 000000001111111223333333344567777777888
Q ss_pred HHHHHhhhhhhHhhccHHHHhhc--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 009185 328 NFFMQASGNDAVVYYSPEVFKDA--GINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLM 390 (541)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 390 (541)
.+.+...++..+..|.....++. .......-|..-....+.+.++.+..|++-.++.+..-+.
T Consensus 255 WWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~ 319 (412)
T PF01770_consen 255 WWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELA 319 (412)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH
Confidence 88888888888888887777766 1222333344667777788888888899855555543333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-13 Score=128.13 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=133.1
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
......|...+|+|.++.++|++.+...++..++.++.+++.||+|+|+.+.++.+..++..++.++++|.+.+++.+++
T Consensus 223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l 302 (382)
T TIGR00902 223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL 302 (382)
T ss_pred HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 34445565557799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~ 244 (541)
+|++.+...+....++.+. |+++|+...++++ ...++|.++|+.++|.+. ++.|+ ..|++.+++.++..+..
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~---~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY---PTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999986 578899999999999999 77786 55666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-13 Score=129.39 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=129.8
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVS 168 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 168 (541)
.....|...++.+.+. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (392)
T PRK12382 235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3344454555666543 56667778888899999999999999999999999999999998888889999888999999
Q ss_pred hhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHh
Q 009185 169 GIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVI 245 (541)
Q Consensus 169 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 245 (541)
|++.+...+...+.+.|.+|+++||++.++++....+|..++|.+.+.+. ++.||++.|.+.+++.++..+..+
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA---TSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999999999999999999999999998 788999999998777776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=118.10 Aligned_cols=178 Identities=14% Similarity=0.138 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
...++.+.+..|......+...-.+|.+-++.+. +...++...+.++++..++.++...+.||+.||++++....++.+
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4456667778888888889999999999988876 566677799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+.++..+..++. .+.+.=+..+.....+.+...+++.++.|+++|+++.++......+...+|.++.
T Consensus 91 ~n~l~alAp~f~-------------~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 91 SNLLSALAPSFA-------------VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHhccHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 999998877652 2333333333344444467778889999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 479 LSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 479 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
.++-+..||+..|+..+++.++..+..+..+|
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999988898
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-13 Score=129.55 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=129.0
Q ss_pred hhhhHHHHhhhcCCChh----HHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSI----QVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAG 164 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~ 164 (541)
..+..+....+.+.+.. ..+.+.+++.++..++.++.|+++||+|||+.+..+..+.+++.+...+.++.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44455544444332222 34566677788888999999999999999999999999888888888888899999999
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~ 244 (541)
+++.|++.+...+...+++.+..|+++||+.+++......+|..+||.+++.+. +..||++.|++.+++.++..+..
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~---~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS---ANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH---hhcchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 78899999999887777766544
Q ss_pred h
Q 009185 245 I 245 (541)
Q Consensus 245 ~ 245 (541)
+
T Consensus 395 ~ 395 (408)
T PRK09874 395 W 395 (408)
T ss_pred H
Confidence 3
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=131.65 Aligned_cols=152 Identities=12% Similarity=0.086 Sum_probs=125.7
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc--chhHHHHH--HHHHHHHHHHHHHHhcccHHHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC--IGRRYTIV--LAAATFLLGALLMGLAPSFLFLMA 163 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr--~Grr~~~~--~~~~~~~i~~~~~~~a~~~~~l~~ 163 (541)
.....+|.+.+++|.+..+.+++.+...++..++.++.|+++|| +++|+... .+.++.+++.++..++++++.+++
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i 338 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI 338 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34445566667889999999999999999999999999999998 34443333 344445566667777889999999
Q ss_pred HHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcc-hhHHHHHhhhHHHHHHHH
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHI-NWRLMLGLAALPAIAVAF 242 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~-gwr~~f~~~~~~~~~~~~ 242 (541)
.+++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+. +.. +|++.|++.++..++..+
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~---~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV---DATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee---hhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 555 599999987776655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-12 Score=123.23 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
++.+.+..+......+......|.+.++.+. +..+.+.......++..++.+..|.+.||+|||+.+..+..+.+++.+
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 89 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHM-QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHV 89 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3333333333333333344456777776655 566777788888888899999999999999999999999888888877
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
...+.... + .+.+.-+..+.......+...+++.|.+|+++|++++|+......++..++|++.+.+
T Consensus 90 ~~~~~~~~---------~----~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 90 LSALAWNF---------T----VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHhccH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77664332 2 1222222333333334456667888999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.+..||++.|++.+++.++..+..+...|+.
T Consensus 157 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 157 GQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999888777766655555553
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=124.51 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=115.7
Q ss_pred ccchhhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHH--HH------HHHHHHHHHHHHHHHhc
Q 009185 85 DIGVMSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRY--TI------VLAAATFLLGALLMGLA 155 (541)
Q Consensus 85 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~------~~~~~~~~i~~~~~~~a 155 (541)
.........| .+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .. ..+.++..+........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV 309 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334455555 455678999999999999999999999999999999999996 11 11111122222222223
Q ss_pred ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHhhh
Q 009185 156 PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-WRLMLGLAA 234 (541)
Q Consensus 156 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~~~ 234 (541)
++.+..+...++.+.+.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+. +..| |++.|++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~---~~~g~~~~~~~~~~ 385 (399)
T TIGR00893 310 NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA---ATTGSFAGALMVVA 385 (399)
T ss_pred hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc---cCCCchhHHHHHHH
Confidence 345555555555555555 78899999999999999999999999999999999999999998 6777 999998877
Q ss_pred HHHHHHHHHH
Q 009185 235 LPAIAVAFGV 244 (541)
Q Consensus 235 ~~~~~~~~~~ 244 (541)
+..++..+..
T Consensus 386 ~~~~~~~~~~ 395 (399)
T TIGR00893 386 ALALIGALSY 395 (399)
T ss_pred HHHHHHHHHH
Confidence 7766655543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=124.04 Aligned_cols=179 Identities=20% Similarity=0.199 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
.+.+.+..+.............|.+.++.+. +....+.......++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 85 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL 85 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence 3344444444445555566667777777655 556677788899999999999999999999999999998888888777
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
++...... + .+.+..+..++......+...+++.|.+|+++|+++.|+.+....++..+++.+.+.+
T Consensus 86 ~~~~~~~~---------~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 152 (385)
T TIGR00710 86 GLALSNNI---------E----TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152 (385)
T ss_pred HHHHHccH---------H----HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654321 1 2223333444444444466678889999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
.+..+|+..+++.+++.++..+..+...||+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 153 LVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 998999999988888777777666666666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=124.50 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=125.5
Q ss_pred hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009185 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSG 169 (541)
Q Consensus 90 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G 169 (541)
...+|.+.++.|.++++.+++.+...++..+++++.|++.||+|+|+++..+..+.+++.+... . ...+....++.|
T Consensus 220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 3456766677899999999999999999999999999999999999999998888877765543 2 234455778888
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhc
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA 246 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 246 (541)
++.+...|...+.+.|..|+++++.+.+.+....++|.++||.+++.+. ++.+|++.|.+.+.+.++..+..+.
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM---QNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCccHHHHHHHHHHHHHHHHHHh
Confidence 8877788999999999999888888888888899999999999999998 7889999999877777766554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=125.59 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=129.9
Q ss_pred hhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 89 MSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 89 ~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
+....|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+..++....+|.+.+.+..++
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG 303 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 4445564 457789999999999999999999999999999999999999998888888777777778888888888899
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcC
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
.|++.+...+...++..|..| ++++...+.......+|..++|.+.+.+. +..||+..+++.+++.++..+.+..+
T Consensus 304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV---AHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH---HHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 999888888888888888775 45677888888889999999999999998 77899999998777766665555444
Q ss_pred C
Q 009185 248 P 248 (541)
Q Consensus 248 ~ 248 (541)
+
T Consensus 380 ~ 380 (394)
T PRK03699 380 G 380 (394)
T ss_pred H
Confidence 3
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-12 Score=123.40 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVS 399 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 399 (541)
+.+....+..+...........+.|.+.++.+. +....+.......++.+++.++.|++.||+|||+.+..+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 95 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF 95 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444444445555666677877776554 5566777888888999999999999999999999999888888877
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
.+++.+.... + .+.+..++.+++.....+...+++.|.+|++.|+.+.++.+....+|..+++.+.+
T Consensus 96 ~~~~~~~~~~---------~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 96 TLLCALATNV---------T----QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHccch---------H----HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 7666553221 1 23333444555555556777888999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 480 SISRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 480 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.+.+..+|+..+++.+++.++..++.+.+.+++.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 9999999998888887666666666656666643
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.9e-12 Score=122.33 Aligned_cols=173 Identities=13% Similarity=-0.004 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHhHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF-GRRPLLMLGSTGMAV 398 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~ 398 (541)
+.++.++...+.....++++..++|.|+.+..+.+...++.....+.....++.+++|+++||+ |||+.+.++.++..+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 3455555566667778888999999999887666777777788888888899999999999999 999999999999888
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch--hhhhhhHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK--FRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+.+++...... .. ...........+.....+...+++.|.+|++ .|.++.++.+...++|+.++|.
T Consensus 89 g~lll~~~~~~--------~~----~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 89 GHVVLGASEIH--------PS----FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHhhcc--------hh----HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 87666432110 01 1111111111222233355567889999875 6999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 477 SFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
+.+.+.+..||+..|.+.++..+++.+.
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999988866544444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=127.81 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=118.3
Q ss_pred hhhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH--HHHhcccHHHHHHHH
Q 009185 89 MSGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL--LMGLAPSFLFLMAGR 165 (541)
Q Consensus 89 ~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~--~~~~a~~~~~l~~~r 165 (541)
.....| ++.+++|.+..+.++..+.+.++..++.+++|+++||+|||+.+..+..+..++.. .....++.+.+.+.+
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASL 356 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444556 56678999999999999999999999999999999999999887765544444332 223445777777888
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHH-HHHHHHHHHhhhcCC---------CCcchhHHHHHhhhH
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINF-GILLGYISNYALSGL---------PEHINWRLMLGLAAL 235 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~---------~~~~gwr~~f~~~~~ 235 (541)
++.|++..+..........|.+|++.||.+.|+.+....+ |..++|.+.|.+.+- ....||+..|++.++
T Consensus 357 ~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~ 436 (467)
T PRK09556 357 FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDI 436 (467)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHH
Confidence 8888654433333346677999999999999999888886 779999999999830 004689999988766
Q ss_pred HHHHHHHHHh
Q 009185 236 PAIAVAFGVI 245 (541)
Q Consensus 236 ~~~~~~~~~~ 245 (541)
..++..+..+
T Consensus 437 ~~~~~~~~~~ 446 (467)
T PRK09556 437 AAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHH
Confidence 6666554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=125.95 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhc--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHhHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDA--GINSKKQLVGVTVIMGIAKTSFVLISALYLDH-FGRRPLLMLGSTGMA 397 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~ 397 (541)
.++.+.+..++...+++.+..++|.|+++. .+.+...++.......++..++.+++|+++|| +|||+++.++.++.+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~ 90 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM 90 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence 355556666777788888999999999876 55677788888999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch---hhhhhhHHHHHHHHHHHHHH
Q 009185 398 VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK---FRAQGSSLAISVNRLVSGIV 474 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~ 474 (541)
++.+++++.... + .+.....+.+.+.....|...+++++.+|++ .|+.+.++.+...++|..++
T Consensus 91 ~g~~~~~~~~~~---------~----~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 91 LGHFMLAMSIYP---------D----LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHHhcccH---------h----HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 888877653221 1 2222333344445555577778888888765 38889999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009185 475 AMSFLSISRAVTFGGMFFILSGITAVGTVF 504 (541)
Q Consensus 475 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 504 (541)
|.+.+.+.+..||+..|.+.++..+++.+.
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999899999988877655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=124.49 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
++.++...+..++.....+.+..+.|.+.++.+. +....+.......++..++.++.|+++||+|||+.++.+..+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 4456777777777777888888899999988655 555666677788888899999999999999999999888777777
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+.++..+.... + .+...-++.+++.....|...+++.|.+|++.|+++.|+.+....++..++|.+.
T Consensus 88 ~~~~~~~~~~~---------~----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 88 GSLFCALSGTL---------N----ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHhCCH---------H----HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 76665442211 1 2222333444444444566777888999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 479 LSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 479 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
+.+.+..+|++.|.+...+..+..+......++
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999988877777666665555554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.3e-12 Score=126.72 Aligned_cols=164 Identities=13% Similarity=-0.004 Sum_probs=127.6
Q ss_pred ccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-----c---
Q 009185 85 DIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-----P--- 156 (541)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-----~--- 156 (541)
.........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++. +
T Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 33445566788888999999888999999999999999999999999999999999988888887777621 1
Q ss_pred ---cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhh
Q 009185 157 ---SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLA 233 (541)
Q Consensus 157 ---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~ 233 (541)
+...+....++.+.......+....++.|.+|+++|+.++++......+|.+++|.+.+.+. ++.+|++.|++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~---~~~~~~~~f~~~ 455 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML---ESIGVGGVFIFF 455 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCccceehhH
Confidence 23333333333333333345667778899999999999999999999999999999999888 678999999987
Q ss_pred hHHHHHHHHHH-hcCCCCh
Q 009185 234 ALPAIAVAFGV-IAMPESP 251 (541)
Q Consensus 234 ~~~~~~~~~~~-~~~~e~p 251 (541)
++++++..+.. ++.||++
T Consensus 456 ~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 456 GGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHheecccCC
Confidence 77776665544 4566653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=121.34 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=130.5
Q ss_pred HHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHH
Q 009185 326 GVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGL 405 (541)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 405 (541)
....++...+.+....+++.++++..+.+....+.......+...+..++.|+++||+|||+.+..+..+.+++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777778888887766677888888888888999999999999999999999999999998888887765
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 406 GSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV 485 (541)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 485 (541)
.... |. +.+..+..++......|...+++.|.+|+++|++++|+.+...++|..++|.+.+.+. ..
T Consensus 96 ~~~~---------~~----l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 96 AHEP---------WL----LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred hccH---------HH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 3221 22 2222333333333344566677889999999999999999999999999999999988 77
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 486 TFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 486 g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
+|+..|++.+.+.++..++...+.++
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 89888888877766665554455554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=126.64 Aligned_cols=149 Identities=19% Similarity=0.088 Sum_probs=118.4
Q ss_pred chhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHH--HHHHh--cccHHHH
Q 009185 87 GVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGA--LLMGL--APSFLFL 161 (541)
Q Consensus 87 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--a~~~~~l 161 (541)
.......|. +++++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 334455564 447789999999999999999999999999999999999998876555544433 22222 2567777
Q ss_pred HHHHHHHhhcccccccchhhhhhhcCccccchhhchH-hHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHhhhHHHH
Q 009185 162 MAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSL-PEVFINFGILLGYISNYALSGLPEHIN-WRLMLGLAALPAI 238 (541)
Q Consensus 162 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~~~~~~~ 238 (541)
++..++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+. ++.| |++.++..++.++
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~---~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV---AMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH---HHcCcchhHHHHHHHHHH
Confidence 8888999999988999999999999999999999998 45667789999999999998 6677 8887776555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=124.67 Aligned_cols=184 Identities=13% Similarity=0.015 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHH
Q 009185 318 RRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMA 397 (541)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 397 (541)
+++.++...+...........+....|.+. +. +.+..+.+.......++..++.+..|++.||+|||+.+..+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHH-Hc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 445555555555555555555566667555 44 5677778878889999999999999999999999999888888877
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHH
Q 009185 398 VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMS 477 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 477 (541)
++.+++....... .. . ..+.+..+..+++.....+.....+.|.+|+++|++++|+.+....+++.+++.+
T Consensus 103 ~~~~~~~~~~~~~-----~~-~---~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l 173 (438)
T TIGR00712 103 AVMLLMGFVPWAT-----SS-I---AIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLL 173 (438)
T ss_pred HHHHHHhcccccc-----ch-H---HHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHH
Confidence 7766654432110 00 1 1122222233333333344455677889999999999999999999999999988
Q ss_pred HHHHHH-hhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 478 FLSISR-AVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 478 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.+...+ ..+|+..|++.+++.++..++.+++.+|+
T Consensus 174 ~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 174 VLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 876554 46899999998888777766666666654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=124.92 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=127.8
Q ss_pred HHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHh
Q 009185 328 NFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGS 407 (541)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
..++............|.++.+..+.+..+.+.......++..++.++.|+++||+|||+.+.++.++.+++..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh
Confidence 34444455555666667455555555667777788899999999999999999999999999999998888855544321
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009185 408 KYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 487 (541)
.. + .++...+..+.+.....+....++.|.+|+++|+.++++.+....+|..+++.+.+.+.+..+|
T Consensus 84 ~~---------~----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 84 NF---------W----LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp CH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred hH---------H----HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 11 2 3334444445555555677788999999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 488 GGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+..+++.+++.++..++...+.+++
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccccccchhhhhhhhHhhhhhhc
Confidence 9999999998888877544444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=119.77 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=122.7
Q ss_pred hHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCch
Q 009185 338 AVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (541)
......|.+.++.+. +..+.+.......++..++.++.|.+.||+|||+.+..+.++.+++.++..+...+
T Consensus 38 ~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-------- 108 (394)
T PRK10213 38 LPVSLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF-------- 108 (394)
T ss_pred HHHhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH--------
Confidence 444456777776654 55666667888899999999999999999999999999999998887776654322
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 009185 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGI 497 (541)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 497 (541)
+ .+++.-+..++......+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||+..|++.+++
T Consensus 109 -~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 109 -S----LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -H----HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 22333334444444445677788899999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHhhcccC
Q 009185 498 TAVGTVFFYFFLPET 512 (541)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (541)
.++..+......|+.
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 666555444445553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-12 Score=124.39 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=135.9
Q ss_pred hhhhHHHHhhh-cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 89 MSGAILYIRDN-LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 89 ~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
.....|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++.++.++.+.+.++.++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34455655555 89999999999999999999999999999999888888888888888888888888998888889999
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH-HHHHHhc
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA-VAFGVIA 246 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~-~~~~~~~ 246 (541)
.|++.+...+...+++.|..|++.||++++++.....+|..+|+.+.+.+. +..|++..+++.+...++ ..+....
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG---AMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH---HHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 999988777788889999999999999999999999999999999999999 778888888876555444 4445555
Q ss_pred CCCCh
Q 009185 247 MPESP 251 (541)
Q Consensus 247 ~~e~p 251 (541)
+||.+
T Consensus 399 ~~~~~ 403 (417)
T PRK10489 399 LGELR 403 (417)
T ss_pred ccccc
Confidence 66653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=124.93 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=128.7
Q ss_pred HHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhc
Q 009185 331 MQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYL 410 (541)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (541)
........+....|.+.++.+. +....+.+.+...++..++.++.|+++||+|||+.+..+..+..++.+++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~- 83 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL- 83 (379)
T ss_pred HHHHhHHhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH-
Confidence 3444455666667776666554 55667778889999999999999999999999999999998888888877664332
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhcchh
Q 009185 411 DQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM-SFLSISRAVTFGG 489 (541)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~ 489 (541)
+ .+.+..+..+++.....+...+++.|.+|+++|+.+.++.+....+|..+++. +.+.+.+..+|+.
T Consensus 84 --------~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 151 (379)
T TIGR00881 84 --------W----VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW 151 (379)
T ss_pred --------H----HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence 1 33344444555556666788889999999999999999999999999999994 6666667778988
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q 009185 490 MFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.+++.+.+.++..++.+++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 152 VFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHHHHHHheeeCCCc
Confidence 888888777776666656666543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-12 Score=121.89 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=125.9
Q ss_pred HHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHH
Q 009185 327 VNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406 (541)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 406 (541)
...+....+........|.|..+.+. +....+...+...++.+++.++.|+++||+|||+.+..+..+..++..++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 84 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTG-SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV 84 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666677888877654 55667778889999999999999999999999999998888877777766654
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 407 SKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT 486 (541)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 486 (541)
..... ...+ .+.+..+..+.......+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..+
T Consensus 85 ~~~~~----~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 85 ALLGG----LNIW----QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHcCC----CcHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 42110 0112 222233333444444456777889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 009185 487 FGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~ 505 (541)
|+..+++.++..++..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 157 IKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888776665555444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=118.86 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
++...+.++..+........+.|.++++..+.+....++......++..++.++.|+++||+|||+.+.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 44556666666777778888889766666666777788788999999999999999999999999999999998888887
Q ss_pred HHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGS-KYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 402 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
++.+.. .. + .+.+..+..+..... .+....++.|.+|+++|+.+.++.....++|..+++.+.+.
T Consensus 83 ~~~~~~~~~---------~----~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 83 WAGLAVQSY---------S----VLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHhhhH---------H----HHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 776643 22 1 122222233333222 23445778899999999999999998888888888887776
Q ss_pred HHHh----------hcchhHH-HHHHHHHHHHHHHHHhhccc
Q 009185 481 ISRA----------VTFGGMF-FILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 481 ~~~~----------~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 511 (541)
+... .+|++.+ +..+.+..+..++.+...++
T Consensus 149 l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 149 IIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 6653 3678877 44344444444444444444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=120.40 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
.++...+..+............+|.+.++.+. +....+...+...++..++.++.|++.||+|||+.+..+..+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 34455555565666666777788888777655 45566778899999999999999999999999999999999988888
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
++..+..+. + .+.+.-++.++......+....++.|.+|+++|+.++++......++..+++++.+.
T Consensus 83 ~l~~~~~~~---------~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 83 AMFTLSSSY---------L----MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHHhCcH---------H----HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 777664332 2 222222333333333334445667888899889999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 481 ISRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 481 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
+.+..+|++.|.+.+.+.++..+..+...|+.+
T Consensus 150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 988899999999988877776666556666643
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=121.39 Aligned_cols=179 Identities=14% Similarity=0.129 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
+.......+....+........|.+.++.+. +....+...+...++..++.++.|+++||+|||+.+..+..+..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3344444555555556666778888877655 455666688888899999999999999999999999998888887777
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
++...... + .+....+..+.......+....++.|.+|+++|+++.++.+....++..++|.+.+.+
T Consensus 84 ~~~~~~~~---------~----~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 84 LCSLAETS---------S----LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHHhCcH---------H----HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553221 1 1122222333333333455667888999999999999999999999999999999888
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
.+..+|+..+++.+++.++..++.+...+|++.
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 888899999988888877777766666666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=120.78 Aligned_cols=181 Identities=17% Similarity=0.160 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
.+.+.+....+..+.............|.+.++.+. +....+...+...++..++.++.|++.||+|||+.+..+.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL-TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344556666677777777777777777877666655 5566677888999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+++.++..+...+ + .+....+..+.+.....+...+++.|.+|+++|+.+.++.+....+|..+++.
T Consensus 88 ~~~~~~~~~~~~~---------~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 88 SAGTLACGFAPGY---------I----TMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHHHhccH---------H----HHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8877776653322 1 22333344444444555666788899999999999999999999999999999
Q ss_pred HHHHHHHhhc--chhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 477 SFLSISRAVT--FGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 477 ~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+.+.+.+..+ |+..+.+.+...++. ++.....||+
T Consensus 155 l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 155 VYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 9998888766 877776654444333 3333445554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=127.91 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
+..+.+..+.............|.+.++.+. +....++......++..++.++.|++.||+|||+.+.++.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3344455555666666777788888887765 455666688899999999999999999999999999999888888877
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
+....... + .+++..+..+++.....+...+++.|.+|++.|+.+.++......+|..++|.+.+.+
T Consensus 83 ~~~~~~~~---------~----~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 83 LCGVAPNL---------E----LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HHhCcCCH---------H----HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 76653221 1 2334444455555555677788899999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.+..+|++.|++.+.+.++..++.++..++++
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 99999999999888777777666666666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=124.75 Aligned_cols=145 Identities=11% Similarity=-0.020 Sum_probs=116.3
Q ss_pred hhhhHHHHh-hhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q 009185 89 MSGAILYIR-DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA--PSFLFLMAGR 165 (541)
Q Consensus 89 ~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a--~~~~~l~~~r 165 (541)
....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 445566555 6899999999999999999999999999999999999999998887777666544433 3444454555
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
++.|....+..+....++.|.+|+++|++++++......+|..+||++++.+. +..||+..+...+..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~---~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA---QRLDLGTALASLSFS 441 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh---ccCChHHHHHHHHHH
Confidence 55544444455677788999999999999999999999999999999999999 788999888664433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=124.06 Aligned_cols=179 Identities=17% Similarity=0.128 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
.+..+++..+....-...+..-.|.+.++.+. +....++....+.++...+.+..|+++||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45566666676777777778888998877655 44556667888888989999999999999999999999999999888
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeeccc-CCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEI-FPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
++.++.... + .+++.-.+.+++.....|.....+.+. .|+++|+++.|+......+|..++|.+.+
T Consensus 86 ~~~~~a~~~---------~----~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 86 LAAAFSPTA---------S----WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHcCCH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887764332 1 222222333333333445444545454 47789999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 480 SISRAVTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 480 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.+.+..+|++.|++...++++..++.++++|+.+
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999988887777776666666643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=119.11 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=124.1
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP-SFLFLMAGRV 166 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~r~ 166 (541)
......|.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+ .-+
T Consensus 223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~ 300 (393)
T PRK09705 223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAM 300 (393)
T ss_pred HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHH
Confidence 344456655567899999999999999999999999999999999999999999888877776655433 32222 234
Q ss_pred HHhhcccccccchhhhhhhcCc-cccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHhhhHHHHHHHH-H
Q 009185 167 VSGIGVGYSLMIAPVYTTEISP-AMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-WRLMLGLAALPAIAVAF-G 243 (541)
Q Consensus 167 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~~~~~~~~~~~-~ 243 (541)
+.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++. +..| |+..|.+.++.+++..+ .
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR---SISGNYLMDWAFHALCVVGLMIIT 377 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchHHHHHHHHHHHHHHHHH
Confidence 6788888888887777777775 578999999999999999999999999998 5554 78888886666655544 4
Q ss_pred HhcCCCChH
Q 009185 244 VIAMPESPR 252 (541)
Q Consensus 244 ~~~~~e~p~ 252 (541)
.++.||++.
T Consensus 378 ~~~~~~~~~ 386 (393)
T PRK09705 378 LRFAPARFP 386 (393)
T ss_pred HHhcccccc
Confidence 556777643
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=119.66 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=121.6
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHH-HHHHHHHHHHHHHHh-----cccHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIV-LAAATFLLGALLMGL-----APSFLFL 161 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~-----a~~~~~l 161 (541)
......|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.+
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 3455667777889999999999999999999999999999999999988764 334444444333332 3467777
Q ss_pred HHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHH
Q 009185 162 MAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVA 241 (541)
Q Consensus 162 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~ 241 (541)
++..++.|++.+...+ ....+.|.. +++|+++.|+.+....+|..++|.+++.+. +..||+..|++.+++.++..
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~---~~~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFI---GFFGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcchHHHHHHHHHHHHHHH
Confidence 8889999998887654 445667765 468999999999999999999999999998 77899999999887777766
Q ss_pred HHHhcC
Q 009185 242 FGVIAM 247 (541)
Q Consensus 242 ~~~~~~ 247 (541)
+..+++
T Consensus 395 ~~~~~~ 400 (402)
T TIGR00897 395 FLTAFI 400 (402)
T ss_pred HHHHHh
Confidence 655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=119.65 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=113.0
Q ss_pred HhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchh
Q 009185 339 VVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPA 418 (541)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (541)
+....|.+.+ . +.+....+...+...++..++.++.|+++||+|||++++++.++.+++.+++.+..... ...
T Consensus 48 ~~~~~p~l~~-~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~-----~~~ 120 (452)
T PRK11273 48 FALAMPYLVE-Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSI 120 (452)
T ss_pred HHHhhHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc-----ccH
Confidence 4456676554 4 55677788788999999999999999999999999999999888888877776542110 001
Q ss_pred HHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHH
Q 009185 419 WAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF-LSISRAVTFGGMFFILSGI 497 (541)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 497 (541)
+ .+.+..++.+++.....+.....+.|.+|++.|++++|+.+....+|+.+.+++. ..+....+|+..|++.+++
T Consensus 121 ~----~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 121 A----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred H----HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 2222223333334334454456677889999999999999999998875544443 3333345888899888877
Q ss_pred HHHHHHHHHhhcccC
Q 009185 498 TAVGTVFFYFFLPET 512 (541)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (541)
.++..++.+++++|+
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 777666666666664
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=121.48 Aligned_cols=156 Identities=16% Similarity=0.043 Sum_probs=117.1
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh---c-ccHHHHHHHHHHHh
Q 009185 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL---A-PSFLFLMAGRVVSG 169 (541)
Q Consensus 94 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---a-~~~~~l~~~r~l~G 169 (541)
+++.+++|.+......+.....+...++.++.|+++||+|||+++..+.++.+++.+.... . ++.+.+++..++.|
T Consensus 275 ~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (438)
T PRK09952 275 NYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN 354 (438)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566788988877666666667777888999999999999999999887776655443322 2 23455555677778
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCC
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMP 248 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~ 248 (541)
++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ..+|+..+...++..++..+..+.++
T Consensus 355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888888999999999999998888854 445689999999999987211 22588888887777777766666666
Q ss_pred CC
Q 009185 249 ES 250 (541)
Q Consensus 249 e~ 250 (541)
|+
T Consensus 434 ~~ 435 (438)
T PRK09952 434 DN 435 (438)
T ss_pred cc
Confidence 64
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=119.13 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
.+++.+....+..+.............|.+.++.+. +....+.......++..++.++.|+++||+|||+.+..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL-TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344445555555555556666666666766666654 4556676888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+++.++..+.... + .+.+.-+..+++.....+....++.|.+|++.|+++.++......+|..+++.
T Consensus 94 ~~~~~~~~~~~~~---------~----~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 94 SVGTGLSGLASGV---------I----MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHHHHHHHhHH---------H----HHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence 8888777665432 1 22333334444444455666778899999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHH
Q 009185 477 SFLSISRAVTFGGMFFILS 495 (541)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~ 495 (541)
+.+.+.+..+|+..+++..
T Consensus 161 l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 161 FMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHcccCCHHHHHHHHH
Confidence 9988888889998887643
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=116.74 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=115.4
Q ss_pred HHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHH
Q 009185 327 VNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLG 406 (541)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 406 (541)
..+++.....+....+.|.+.++.+. +..+.+...+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 43 ISFFTCFVSTFAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555666777666665 55566667778888899999999999999999999988888777777666554
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 009185 407 SKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR--- 483 (541)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 483 (541)
... + .+.+..++.+++.....+ ...++.|.+|++.|+.++|+.+...++|+.+++.+.+.+..
T Consensus 122 ~s~---------~----~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~ 187 (476)
T PLN00028 122 SSA---------T----GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIK 187 (476)
T ss_pred cCH---------H----HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1 111222223333322223 33467899999999999999998888888888776655432
Q ss_pred ------hhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 484 ------AVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 484 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
..||++.|++.+++.++..++.+++.++
T Consensus 188 ~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 188 DAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1479999999888877766665544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=117.81 Aligned_cols=148 Identities=15% Similarity=0.055 Sum_probs=124.5
Q ss_pred hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Q 009185 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSG 169 (541)
Q Consensus 90 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G 169 (541)
....|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.++.+++++.+.+++..++.|
T Consensus 225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33445455779999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF 242 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~ 242 (541)
++.+...+....++.+. +++++++..+++. ...++|..+||.++|.+. +..|+ ..|+..+++.++.++
T Consensus 305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~---~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY---QHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccH-HHHHHHHHHHHHHHH
Confidence 99998889999988887 5666788888875 556788899999999999 77787 466665555554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=120.65 Aligned_cols=164 Identities=15% Similarity=0.034 Sum_probs=121.3
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc--cH--HHHHH
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP--SF--LFLMA 163 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~--~~l~~ 163 (541)
......|.+.+++|.+.....+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +. .....
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344556888888998887777777788888999999999999999999999999999999888776432 21 12223
Q ss_pred HHHHHhhcccc-cccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhc---CCCCcchhHHHHHhhhHHHHH
Q 009185 164 GRVVSGIGVGY-SLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS---GLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 164 ~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~---~~~~~~gwr~~f~~~~~~~~~ 239 (541)
+-++.+++.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+.+. ...+..+|++.|++.++.+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 33444444443 34677899999999999999999999999999988866655433 011467899999887766665
Q ss_pred HHHH-HhcCCCCh
Q 009185 240 VAFG-VIAMPESP 251 (541)
Q Consensus 240 ~~~~-~~~~~e~p 251 (541)
..+. +++.||+.
T Consensus 449 ~~~~~~~~~~e~~ 461 (479)
T PRK10077 449 AALFMWKFVPETK 461 (479)
T ss_pred HHHHHHhccccCC
Confidence 5554 44567763
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=112.24 Aligned_cols=188 Identities=11% Similarity=0.053 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
...+|.++...+.++..+...+.+....+.+-+...+.+..+.+.+.++..++..+.++..|++.||+|.|+++.++..+
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45566777777777766666666666666665534556777778788888999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
..+..+.+.+...... .+.+ .+++..++.++. .+..+.....+++.+|+++||++.|+....+++|..+++
T Consensus 110 ~~i~~~~~~~a~~~~~----~s~~----~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 110 LIIPCVWLGIAVQNPN----TPFG----IFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHcccC----CCHH----HHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 8877777665321100 0111 222222333332 223355667789999999999999999877777777666
Q ss_pred HHHHHHH-----H-------------hhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 476 MSFLSIS-----R-------------AVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 476 ~~~~~~~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.+.+.+. + ..+++.+.++...+.++..++.+++.++.
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6555433 2 22355566677777767666666665553
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-11 Score=116.52 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=120.7
Q ss_pred hhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCC
Q 009185 335 GNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD 414 (541)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
....+....|.+.++.+. +....+.......++..++.++.|+++||+|||+.+..+..+..++.++.......
T Consensus 28 ~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----- 101 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNA-GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI----- 101 (406)
T ss_pred hhhhHhcchHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH-----
Confidence 444455556666666554 55666667888999999999999999999999999998888888777766553221
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 009185 415 IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFIL 494 (541)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 494 (541)
+ .+....+..+.......+...+.+.|.+|++.|..+.++......++..++|.+.+.+.+..+|+..+++.
T Consensus 102 ----~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 102 ----E----QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred ----H----HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 1 12222223233333333555677789999999999999998888889999999999998988999999888
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 009185 495 SGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~ 513 (541)
+++.++..+..+...||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 174 AALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 8887777666555666654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-11 Score=117.25 Aligned_cols=166 Identities=13% Similarity=-0.011 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHhHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH-FGRRPLLMLGSTGMAV 398 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~ 398 (541)
+.++.++...+..-++++.+..+++.|+++..+.+...+......+.....+..+++|+++|| +|||++++.+.++..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 345555666667778888899999999987766677767667777777777888899999999 9999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch--hhhhhhHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK--FRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
+.+++.+.... .. .+++.....+.+.....|...+++.|.+|++ .|+.+.++.+...++|..++|.
T Consensus 94 g~~~~~~~~~~---------~~---ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~ 161 (489)
T PRK10207 94 GYFMTGMSLLK---------PD---LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS 161 (489)
T ss_pred HHHHHHHhccc---------hh---HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence 88887764321 11 1223333445555556677788999999877 4578899999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHH
Q 009185 477 SFLSISRAVTFGGMFFILSGI 497 (541)
Q Consensus 477 ~~~~~~~~~g~~~~~~~~~~~ 497 (541)
+.+.+.+..||++.|++.++.
T Consensus 162 l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 162 LAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHhhChHHHHHHHHHH
Confidence 999999999999998885543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=114.54 Aligned_cols=175 Identities=13% Similarity=0.092 Sum_probs=123.0
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLG 404 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 404 (541)
.....++............|.+.++.+. +....+.......++..++.++.|+++||+|||+.+..+..+..++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455556777766655 556667688899999999999999999999999999988888877776665
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 405 LGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
..... + .+.+..+..+++.....+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+.
T Consensus 92 ~~~~~---------~----~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 92 FAHSL---------T----VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHccH---------H----HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43221 1 1222222223322222344456667888888899999999999999999999999999888
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 485 VTFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 485 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
.||+..+++.+++.++..++..++.||++
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 89999998887776665555555666643
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=116.24 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=111.0
Q ss_pred ccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHH
Q 009185 342 YSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAI 421 (541)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (541)
..|.+.++.+ .+....+...+...++..++.++.|+++||+|||+.+..+..+..++.++..+.... +.
T Consensus 28 ~~~~i~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------~~- 96 (401)
T PRK11043 28 AFKAIQADLQ-TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA---------AQ- 96 (401)
T ss_pred hHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH---------HH-
Confidence 3344455544 466777878889999999999999999999999999998888877777666553221 11
Q ss_pred HHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009185 422 ALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVG 501 (541)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 501 (541)
+.+..+..+.......+....++.|.+|++.++...+..+....++..++|.+.+.+.+..+|+..+++.+++.++.
T Consensus 97 ---l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 97 ---LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred ---HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 11222222222222223445667888999888999999988899999999999999999999999988888777766
Q ss_pred HHHHHhh
Q 009185 502 TVFFYFF 508 (541)
Q Consensus 502 ~~~~~~~ 508 (541)
.+..+..
T Consensus 174 ~~~~~~~ 180 (401)
T PRK11043 174 ILPTLRL 180 (401)
T ss_pred HHHHHHc
Confidence 6554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-11 Score=115.07 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=118.2
Q ss_pred hhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCc
Q 009185 337 DAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIK 416 (541)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (541)
.....-+|.+.++.+. +........+.+.++..++.+..|+++||+|||+.+..+..+.+++.++..+....
T Consensus 33 ~~~~p~l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~------- 104 (413)
T PRK15403 33 DLIQPGIINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM------- 104 (413)
T ss_pred HhhccCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH-------
Confidence 3334444555455544 55556668888889999999999999999999999999888888777766653221
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 009185 417 PAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSG 496 (541)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 496 (541)
+. +.+.-++.+.......+....+..|.+|++.+++++++.+....++..++|.+.+.+.+..||++.|++.++
T Consensus 105 --~~----l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~ 178 (413)
T PRK15403 105 --TQ----FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV 178 (413)
T ss_pred --HH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11 122222222222222344456778899999999999999999999999999999998888899999999888
Q ss_pred HHHHHHHHHHhhcccCC
Q 009185 497 ITAVGTVFFYFFLPETK 513 (541)
Q Consensus 497 ~~~~~~~~~~~~~~~~~ 513 (541)
+.++..+..++..||++
T Consensus 179 ~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 179 MGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 87777666556677654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-09 Score=103.04 Aligned_cols=324 Identities=15% Similarity=0.142 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccc
Q 009185 111 VGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAM 190 (541)
Q Consensus 111 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 190 (541)
.++.+..+.+++++.+.+.|+.|+|+.++++...+....+..-+ +|-+-++..-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67778888999999999999999999999999999888877766 66777888999999999999999999999999999
Q ss_pred cchhhchHhHHHHHHHHHHHHHHHhhhcCCCC-----cchhH--------------HHHHhhhHHHHHHHHHHhcCCCCh
Q 009185 191 TRGFLSSLPEVFINFGILLGYISNYALSGLPE-----HINWR--------------LMLGLAALPAIAVAFGVIAMPESP 251 (541)
Q Consensus 191 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-----~~gwr--------------~~f~~~~~~~~~~~~~~~~~~e~p 251 (541)
++.+..++.-.....+.++|..+-..+....+ ..+-+ ..+.+...+.++..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999888888888888666555442111 11111 111111111112222222333221
Q ss_pred HHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHH
Q 009185 252 RWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFM 331 (541)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (541)
. ...++..+ ..+++.++...+.++++....+...++.
T Consensus 215 ~-~~~~~~~~------------------------------------------~~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 215 V-VNCKSSSE------------------------------------------TSFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred h-hhhhhhcc------------------------------------------ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 1 00000000 0111111111233444545444444444
Q ss_pred HhhhhhhHhhccHHHHh---hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh---cCCchHHHHhHHHHHHHHHHHHH
Q 009185 332 QASGNDAVVYYSPEVFK---DAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH---FGRRPLLMLGSTGMAVSLAVLGL 405 (541)
Q Consensus 332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~ 405 (541)
.+.....+....|..+. ....++....+......+++.+++....+.+.+| +|+++++.++..+..+++++...
T Consensus 252 tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l 331 (461)
T KOG3098|consen 252 TGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHL 331 (461)
T ss_pred HHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhc
Confidence 43333333334444332 2333344444445666777888888888888766 57788888888777777766655
Q ss_pred HhhhcC---CCCCch-hH-HHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 009185 406 GSKYLD---QSDIKP-AW-AIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFL 479 (541)
Q Consensus 406 ~~~~~~---~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 479 (541)
...... +.+..+ .+ .......+..+..|+.-..+....+.++...+| +.|..+.++...-..+...++-....
T Consensus 332 ~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 332 SFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 433211 111111 11 112233444445555555555666777788874 45888888887777766655544444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-11 Score=115.73 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=144.3
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhH--HHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRR--YTIVLAAATFLLGAL 150 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~ 150 (541)
++++...+.+++ .++......+-.+++|.+..+...+.-+..+..++|++++|++.||+|.| ++++.+++++.+..+
T Consensus 286 fLia~~l~~dg~-~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 286 FLIAYFLYSDGV-NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 333333344444 23344445566779999999999999999999999999999999999999 999999988877666
Q ss_pred HHHh--------cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCC
Q 009185 151 LMGL--------APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPE 222 (541)
Q Consensus 151 ~~~~--------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 222 (541)
...+ .++-+.+.+.-++.|+..|+.++...++.+|..|+++.+..+|++....-....+||++-+.+. +
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~---~ 441 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT---D 441 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6666 6788999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cch-hHHHHHhhhHHHHHHHHHHhcCCCC
Q 009185 223 HIN-WRLMLGLAALPAIAVAFGVIAMPES 250 (541)
Q Consensus 223 ~~g-wr~~f~~~~~~~~~~~~~~~~~~e~ 250 (541)
..| -|+.++...++.++.+++.++++++
T Consensus 442 ~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 442 ATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 444 7888888777777777766666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=118.37 Aligned_cols=154 Identities=20% Similarity=0.230 Sum_probs=138.1
Q ss_pred chhhhhHHHHh-hhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 009185 87 GVMSGAILYIR-DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGR 165 (541)
Q Consensus 87 ~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r 165 (541)
..+..++|.+. +++|.++...|++.+++.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33445677654 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
++.|++.....+...+.+.+..|++.|||+++++.+....+..+|.++.|.+. +..|-+..+.+.++..++..++
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la---~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA---DHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999 8889999988876655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-11 Score=115.78 Aligned_cols=140 Identities=8% Similarity=0.016 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchh
Q 009185 101 NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAP 180 (541)
Q Consensus 101 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~ 180 (541)
+.+....|++.+...+...++.+..|++.||+|||+.+.++.++.+++.++..+++|.+.+++.++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999888888889999999999999998876666666
Q ss_pred hhhhhcCccccchhhchH-hHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 181 VYTTEISPAMTRGFLSSL-PEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 181 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
.++.+..+++.++...+. .+....+|.++++++++++. +..||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~---~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY---DSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH---HhcccHHHHHHHHHHHHHHHHH
Confidence 777888888888777766 57789999999999999999 7789999999977776665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=114.95 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=124.5
Q ss_pred hHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCch
Q 009185 338 AVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKP 417 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (541)
.....+|.+.++.+. +..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++..++.+....
T Consensus 9 ~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~-------- 79 (377)
T PRK11102 9 MYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI-------- 79 (377)
T ss_pred HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH--------
Confidence 344566777777654 56677778888999999999999999999999999999988888888777654321
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 009185 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGI 497 (541)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 497 (541)
+ .+....+..+++.....+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+++.+.+
T Consensus 80 -~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 80 -D----QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred -H----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 1 22223333344444444566678899999999999999999999999999999999999989999999888888
Q ss_pred HHHHHHHHHhhcccC
Q 009185 498 TAVGTVFFYFFLPET 512 (541)
Q Consensus 498 ~~~~~~~~~~~~~~~ 512 (541)
.++..++.....+|+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 155 AILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHhCCcc
Confidence 777766665666654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=116.82 Aligned_cols=170 Identities=10% Similarity=-0.036 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHhHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH-FGRRPLLMLGSTGMAVS 399 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~ 399 (541)
.++...+..++...+++.+..+++.|+++..+.+...+...............+++|+++|| +|||+.+..+.++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 36666677777778888899999999977666666665555555555555556789999999 59999999999988888
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch--hhhhhhHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK--FRAQGSSLAISVNRLVSGIVAMS 477 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~ 477 (541)
..++.+.... +. .+.......+.+.....+...++..|.+|++ .+..+.++.+...++|..++|.+
T Consensus 102 ~~l~~~~~~~---------~~---~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i 169 (500)
T PRK09584 102 YALVAWSGHD---------AG---IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA 169 (500)
T ss_pred HHHHHHhccc---------HH---HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence 7776653211 11 1222223334444444566667888998764 34567889999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHH
Q 009185 478 FLSISRAVTFGGMFFILSGITAVGT 502 (541)
Q Consensus 478 ~~~~~~~~g~~~~~~~~~~~~~~~~ 502 (541)
.+.+.+..||+..|.+.++..+++.
T Consensus 170 ~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 170 TPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999999999988765444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-10 Score=110.35 Aligned_cols=155 Identities=7% Similarity=0.018 Sum_probs=120.9
Q ss_pred hHHHHhhhcCCChhHHHHHHH-HHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHHH
Q 009185 92 AILYIRDNLNITSIQVEVLVG-SLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM---GLA-PSFLFLMAGRV 166 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a-~~~~~l~~~r~ 166 (541)
..|.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345566789999999999975 5568999999999999999999998877666655544332 333 45555555666
Q ss_pred HHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhc
Q 009185 167 VSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA 246 (541)
Q Consensus 167 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 246 (541)
++.++.|...+...++..+..+++.++...++.+...++|..+++.+.|.+. +..||+..|.+.++++++.++...+
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~---~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV---EAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6555555556667888899999999999999999999999998888899988 7789999999988888877666655
Q ss_pred CCC
Q 009185 247 MPE 249 (541)
Q Consensus 247 ~~e 249 (541)
+++
T Consensus 402 ~~~ 404 (491)
T PRK11010 402 CRQ 404 (491)
T ss_pred HHh
Confidence 544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=111.48 Aligned_cols=163 Identities=17% Similarity=0.017 Sum_probs=114.0
Q ss_pred hhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCC
Q 009185 336 NDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDI 415 (541)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (541)
...+...+|.+.++.+. +..+.+...+.+.++..++.+..|+++||+|||+.+.........+.........+
T Consensus 7 ~~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~------ 79 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY------ 79 (368)
T ss_pred HHHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH------
Confidence 44555667777777655 56677778888899999999999999999998887654443333322211110111
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 009185 416 KPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILS 495 (541)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 495 (541)
+ .+...-+..+..... .+......+|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+
T Consensus 80 ---~----~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 80 ---E----WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred ---H----HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 1 122222222222222 22233445788999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhcccCC
Q 009185 496 GITAVGTVFFYFFLPETK 513 (541)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~ 513 (541)
++.++..++.++.+||..
T Consensus 152 ~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 152 AVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 888887777777777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-10 Score=113.43 Aligned_cols=185 Identities=15% Similarity=0.068 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDA----GINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
..+..+.+..+....-...+....|.+-.+. ...+....+.+.....++.+++.++.|++.||+|||+.+.++.++
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~ 95 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELII 95 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3344444444444444444444445443321 122334556688889999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
..++.++..+.... . .......+++.-+..+++..+..+....++.|.+|++.|+.++++.+....+|..+++
T Consensus 96 ~~v~~~~~~~~~~~------~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 96 MIIATVASGLSPGS------S-PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHccCc------c-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877766553221 0 0111123444444555555556677789999999999999999999999999998888
Q ss_pred HHHHHHHH-----------------------hhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 476 MSFLSISR-----------------------AVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 476 ~~~~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.+...+.. ..+|+..+.+.+...++.. +..+++||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~-~~~~~lpES 227 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL-YFRLTIPET 227 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 88765532 1368878865555444433 334667885
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-11 Score=111.92 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVS 399 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 399 (541)
+....+.+...+...+...+.+++=-++++.+.. +.-.|......-.+.++.-++.+++.+|+|+-+++..+..+..+-
T Consensus 371 ~~~llff~~av~mG~g~~lv~tFLfWHled~~~~-~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~R 449 (618)
T KOG3762|consen 371 PHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGI-KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGR 449 (618)
T ss_pred CCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCc-ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHH
Confidence 3333344444445555555556665577777753 344444666677888899999999999999999999988888877
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHH-HHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISV-NRLVSGIVAMSF 478 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~ 478 (541)
++.+....+ +|.. +.+=++.+......+....+|++...|++.++++.|+.... ..+|-.+|+.+.
T Consensus 450 f~~~S~L~n---------~W~v----LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIG 516 (618)
T KOG3762|consen 450 FLYYSYLQN---------PWMV----LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIG 516 (618)
T ss_pred HHHHHHhcC---------chhe----eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhh
Confidence 777655332 2332 22222233333333344568889999999999999988665 456778999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 479 LSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 479 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
|.+.+..|-+..|.++++.+++..++...
T Consensus 517 G~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 517 GFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred hhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888877776665433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=116.85 Aligned_cols=149 Identities=10% Similarity=-0.027 Sum_probs=117.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 009185 352 INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAA 431 (541)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (541)
+.+....+.+...+.++.+++.+..|++.||+|+|+.+..+.++..++.++..+.... ....+++.-++
T Consensus 72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~r~~ 140 (465)
T TIGR00894 72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-----------GIALVVFCRVI 140 (465)
T ss_pred CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----------CchHHHHHHHH
Confidence 3456667778889999999999999999999999999998888777776665443211 01134445556
Q ss_pred HHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 432 VSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA-VTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
.|+......|....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. .+|+..|++.+++.++..++.+.+.+
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 66777777788888999999999999999999999999999999999999888 49999999988877766665555554
Q ss_pred c
Q 009185 511 E 511 (541)
Q Consensus 511 ~ 511 (541)
+
T Consensus 221 ~ 221 (465)
T TIGR00894 221 D 221 (465)
T ss_pred C
Confidence 4
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-12 Score=116.31 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
....+++.......-.+.+-...+.. ++..+.+....+++.....+...+.+++.|++.||+.|++++.+|..+-.++.
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 34444444444555555544443333 33444566667778999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
+..++...++ .+.+.=.+.|.+-....|+..++++|.+|.++|+.++++.+....+|..+|-.....
T Consensus 113 ~~~~fs~~Fw-------------q~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~ 179 (493)
T KOG1330|consen 113 FASGFSNHFW-------------QVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV 179 (493)
T ss_pred HHHHHHHHHH-------------HHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence 8888865542 344445566677777789999999999999999999999999999999988888888
Q ss_pred HHHhhc-chhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 009185 481 ISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKGKSLEDI 520 (541)
Q Consensus 481 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (541)
+.+..+ |++.|.+.+++.++..++..++.+|.+++..++.
T Consensus 180 va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 180 VASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred eccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 777777 9999999999999999998888888776544333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=103.46 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
...+.++...+.+...+...+.+....+.+- +..+.++.+.+++..+..+.+.+.++..|.+.||+|.|++..++.++.
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~-~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIK-SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 4455566666666655555555555555554 555567777787999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
.+-++.+.+...... .| .++...++. ....+.+.....++++.+|++++|.++|+.. .+++|..+...
T Consensus 90 ~IP~~~~~~a~~~~~------~~----~ll~~gll~-G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~ 157 (417)
T COG2223 90 LIPCLGLAFAVTYPS------TW----QLLVIGLLL-GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQL 157 (417)
T ss_pred HHHHHHHHHHccCCc------hH----HHHHHHHHH-hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHH
Confidence 888888877655421 11 122222222 3333444566788899999999999999999 99999999999
Q ss_pred HHHHHHHhhc---chhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 477 SFLSISRAVT---FGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 477 ~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
+.+.+....+ |+.+..+.....++..+..++..++.
T Consensus 158 ~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 158 VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999988 88888888888888788777776653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-10 Score=99.04 Aligned_cols=160 Identities=17% Similarity=0.131 Sum_probs=127.4
Q ss_pred cchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-------ccH
Q 009185 86 IGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-------PSF 158 (541)
Q Consensus 86 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-------~~~ 158 (541)
...++..-|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+ .++
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~ 96 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPV 96 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccch
Confidence 44567778899999999999999999999999887 4888999999999999999999999998887663 468
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
|.+.+..++.|.+.+.....+...-.+.|| ++||.+.|+.-...+++..+-..+...+. +...-+..+.....+.+
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f---~~~~~~fll~la~~~~~ 172 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF---GDDPSSFLLFLAVLPAV 172 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc---CCChHHHHHHHHHHHHH
Confidence 899999999999888777777777778897 58999999999999998877766666655 34344555555555555
Q ss_pred HHHHHHhcCCCC
Q 009185 239 AVAFGVIAMPES 250 (541)
Q Consensus 239 ~~~~~~~~~~e~ 250 (541)
+.++..++++..
T Consensus 173 v~l~~~~~vr~~ 184 (250)
T PF06813_consen 173 VCLVAMFFVRPV 184 (250)
T ss_pred HHHHHhhheecc
Confidence 555555555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=110.55 Aligned_cols=172 Identities=10% Similarity=0.130 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
++.+.+..++...+........+.+..+.+. +....+.....+.+...+..++.|++.||+|||+++..+..+.+++.+
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHY-PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence 3444455555554444444555555555554 455667688889999999999999999999999999999888877766
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
++.+... . ...-+..+.......|...+++.|.+|+++|++++|+......++..+||.+.|.+
T Consensus 84 ~~~~~~~---------------~-~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 84 LMLFGIH---------------P-LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHH---------------H-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544221 0 12223445566666688889999999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 482 SRAVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 482 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
.+.. +...+.+.+.+.++.. +....+|+.
T Consensus 148 ~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~ 176 (393)
T PRK11195 148 ADPH-AEAALAVCALIYLLAA-LFNLFIPRL 176 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 8754 5455554444433332 333455554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=110.93 Aligned_cols=149 Identities=11% Similarity=-0.046 Sum_probs=115.4
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHH-HHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh------cccHHHHHHH
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNV-CSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL------APSFLFLMAG 164 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------a~~~~~l~~~ 164 (541)
..+.+.+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+...
T Consensus 230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC 309 (390)
T ss_pred HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence 3455556789999999999888764 66777899999999999999998887766443333221 2344445555
Q ss_pred HHHHhhcccccccchhhhhhhcCcc-ccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPA-MTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
..+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+||.+++.+. +..||+..|++.+++.++..+.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~---~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT---DRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHH
Confidence 6666777777777888887777766 88999999999999999999999999998 7789999998877766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=97.38 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccccc
Q 009185 363 VIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (541)
....++.+++.+..+++.||+|||+.+..+.....++.+.+...... + ......+..+.......+.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~g~~~~~~~~~ 71 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI---------T----VLIIARFLQGFGAAFALVA 71 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH---------H----HHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999988887777776666543211 2 1222233333333334466
Q ss_pred ceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 443 TWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 443 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
...+..|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+.+.++..+..+.+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 678889999999999999999999999999999999999988888888888887777776666555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.2e-10 Score=110.27 Aligned_cols=136 Identities=20% Similarity=0.073 Sum_probs=100.2
Q ss_pred hhhhHHHH-hhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHH-H---HhcccHHHHHH
Q 009185 89 MSGAILYI-RDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALL-M---GLAPSFLFLMA 163 (541)
Q Consensus 89 ~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~---~~a~~~~~l~~ 163 (541)
.....|.+ ++.+|.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+..+. . ...+++..+.+
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 44556654 4458999999999999999999999999999999999999988765554332221 1 12345555555
Q ss_pred HHHHHhhcccccccchhhhhhhcCccccchhhchHhH-HHHHHHHHHHHHHHhhhcCCCCcchhH
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPE-VFINFGILLGYISNYALSGLPEHINWR 227 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~~gwr 227 (541)
..++.|++.+...+....++.|.+|+++|+.+.++.. .+..++..++|.+.+++. +..|++
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~---~~~g~~ 398 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI---HVTGDK 398 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH---HhcCCc
Confidence 5666677777666777788999999999999999854 344455777899999888 566654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=113.41 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=151.0
Q ss_pred HHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccch--hHHHHHHHHHHHHHHHHHHH
Q 009185 76 STNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIG--RRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~ 153 (541)
.++..+..+...+....+|...++.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.
T Consensus 304 ~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p 383 (509)
T KOG2504|consen 304 ALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP 383 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 3334445556667788889999999999999999999999999999999999999988 67778889999999999999
Q ss_pred hcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHh
Q 009185 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-WRLMLGL 232 (541)
Q Consensus 154 ~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~ 232 (541)
++++++.++....+.|+..|.........+.|..+.++-..+.|+.....+++.++||.+++.+. +..| |...|..
T Consensus 384 ~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~---d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 384 FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY---DITGNYDHAFYF 460 (509)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee---eccCCeeeehhh
Confidence 99999999999999999999998888889999999999999999999999999999999999887 5555 9999999
Q ss_pred hhHHHHHHHHHHhcCC
Q 009185 233 AALPAIAVAFGVIAMP 248 (541)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (541)
.++..++..+.++..+
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 8888888877776665
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-09 Score=102.11 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 66 KYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
|+...+.+.+.+++-+.+. .........+-++-|++..+..+......+...+..+++..+.||+|||+.++.+..+.
T Consensus 268 R~~~~i~~~v~~~qq~sGi--~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGI--NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred hHHHHHHHHHHHHHHhcCc--ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3333333444444444333 34555666788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---cHH------HHHHHHHH--HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH
Q 009185 146 LLGALLMGLAP---SFL------FLMAGRVV--SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN 214 (541)
Q Consensus 146 ~i~~~~~~~a~---~~~------~l~~~r~l--~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 214 (541)
.+..+++.... +.. ..+++.++ ..++.| .-|...-+.+|.+|++.|..++++.....-+...+-...-
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~f 424 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAF 424 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877642 111 12233333 333333 4578888999999999999999998888777766665555
Q ss_pred hhhcCCCCcchhHHHHHhhhHHHHHHHH-HHhcCCCCh
Q 009185 215 YALSGLPEHINWRLMLGLAALPAIAVAF-GVIAMPESP 251 (541)
Q Consensus 215 ~~l~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p 251 (541)
..+. +..|= +.|++..+++++..+ .++.+|||.
T Consensus 425 p~l~---~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 425 PPLQ---NVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHH---HHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 5554 34444 667776777666655 666799993
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=115.14 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=117.7
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHhhcccc
Q 009185 97 RDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF--LFLMAGRVVSGIGVGY 174 (541)
Q Consensus 97 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~--~~l~~~r~l~G~~~g~ 174 (541)
.++++.+.. +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+.
T Consensus 350 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (505)
T TIGR00898 350 LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS 426 (505)
T ss_pred ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 344554432 33334456677888899999999999999999999999998888877654 5555666777777777
Q ss_pred cccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCCh
Q 009185 175 SLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESP 251 (541)
Q Consensus 175 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p 251 (541)
.++....+..|.+|++.|+.++|+.+....+|.+++|.+.+ +. ..++..++++.++..++..+..+++||+.
T Consensus 427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG----EKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH----HHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 88888999999999999999999999999999999999988 43 45777888887877777777777889874
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=111.09 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=102.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHhhcccccccc
Q 009185 100 LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-PSFLFLMAGRVVSGIGVGYSLMI 178 (541)
Q Consensus 100 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~ 178 (541)
++ ++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+.
T Consensus 253 ~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (437)
T TIGR00792 253 LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGL 331 (437)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 56677888888899999999999999999999999999999988888877765 46677788889999999999999
Q ss_pred hhhhhhhcCc-------cccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 179 APVYTTEISP-------AMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 179 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
..++++|..+ ++++|.+.++.+....+|..+++.+.+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 332 VWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988865 456799999999999999999999999887
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-10 Score=103.91 Aligned_cols=147 Identities=20% Similarity=0.173 Sum_probs=107.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHH
Q 009185 354 SKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVS 433 (541)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (541)
....+|++-+.+++...+.++..|.++||+|||.++.++.+..++...+.+....+ ..++..=+..|
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-------------~afv~aR~l~G 132 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-------------AAFVLARFLGG 132 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhh
Confidence 44567778889999999999999999999999999999999999988887775543 12223244455
Q ss_pred HHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhcchhHH---HHHHHHHHHHHHHHHh
Q 009185 434 FFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR---AVTFGGMF---FILSGITAVGTVFFYF 507 (541)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~---~~~~~~~~~~~~~~~~ 507 (541)
.+.... .+..++++|+++++.|+.+++.++...++|-.+||.+.|++.. ..|....+ ++..+..........+
T Consensus 133 i~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~ 211 (451)
T KOG2615|consen 133 IFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPW 211 (451)
T ss_pred hccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 555444 4556999999999999999999999999999999999999887 34422222 2222222222334456
Q ss_pred hcccCCC
Q 009185 508 FLPETKG 514 (541)
Q Consensus 508 ~~~~~~~ 514 (541)
++||+-.
T Consensus 212 ~lpETL~ 218 (451)
T KOG2615|consen 212 FLPETLP 218 (451)
T ss_pred hCCcccc
Confidence 7787643
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-10 Score=103.01 Aligned_cols=175 Identities=13% Similarity=0.136 Sum_probs=144.5
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
++++-..+.++.+ +.+.....+-..++|++..+..++.-...+..+++++++|+|.||+|.|+++..+++++.+.++..
T Consensus 257 FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~ 335 (438)
T COG2270 257 FLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL 335 (438)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH
Confidence 4444444555553 222333334456999999999999999999999999999999999999999999999999999988
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
-+...-..+.+.-.+.|...|+.+..+.++..+..|++|-++.+|++....-.+..+||.+.+.+.+..+ +-|..+..
T Consensus 336 ~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~ 413 (438)
T COG2270 336 IFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLS 413 (438)
T ss_pred HHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHH
Confidence 8888877788888999999999999999999999999999999999999999999999999999884322 46777766
Q ss_pred hhHHHHHHHHHHhcCCCC
Q 009185 233 AALPAIAVAFGVIAMPES 250 (541)
Q Consensus 233 ~~~~~~~~~~~~~~~~e~ 250 (541)
..++..+.++..+.+|++
T Consensus 414 i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 414 IIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhhHhhEEeecCC
Confidence 666666666666666654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=105.64 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
++.+++.++.............|.+.++.+ .+..+.+.+.+...++..++++..|++.||+|||+.+..+..+.+++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~-~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFT-LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 344455555555555555667787766555 4667778789999999999999999999999999999999999988887
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 402 VLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
++....... +.+ .++...+..+.......+....++.+..|++.+++..++.+....+|..++|.+.+.+
T Consensus 84 l~~~~~~~~------~~~----~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 84 LFWPAAEIM------NYT----LFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHhhc------cHH----HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764432110 011 2222233333333333345556777888999999999999999999999999998877
Q ss_pred HHh--------------------------hcchhHHHHHHHHHHHHHHHH
Q 009185 482 SRA--------------------------VTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 482 ~~~--------------------------~g~~~~~~~~~~~~~~~~~~~ 505 (541)
... .+|+.+|++.+++.++..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 357888888877666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=107.53 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=100.8
Q ss_pred hhhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH--h--cccHHHHHHH
Q 009185 90 SGAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG--L--APSFLFLMAG 164 (541)
Q Consensus 90 ~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--a~~~~~l~~~ 164 (541)
...+| .+.+++|.+..+.++..+...++..+++++.|+++||+|||+.+..+.++.++..+... . ..+....+..
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 34455 45567899998999999988888899999999999999999988777665443332211 1 2233322222
Q ss_pred HHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHH-HHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 165 RVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINF-GILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 165 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
-.+.+++.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ....|...++..++..++.++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~---~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 343 VMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK---SIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHH
Confidence 22233333334445667889999999999999998765443 3344777777654 2223555666666666665555
Q ss_pred HhcCC
Q 009185 244 VIAMP 248 (541)
Q Consensus 244 ~~~~~ 248 (541)
.++++
T Consensus 420 ~~~l~ 424 (432)
T PRK10406 420 SLMLH 424 (432)
T ss_pred HHHhh
Confidence 44443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=101.52 Aligned_cols=131 Identities=10% Similarity=0.019 Sum_probs=108.4
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccc
Q 009185 99 NLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMI 178 (541)
Q Consensus 99 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 178 (541)
.+|.++.+.++..+.+..+..++.++.+++.||+|+||++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999988888888777666654433 3566889999999999
Q ss_pred hhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhH
Q 009185 179 APVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAAL 235 (541)
Q Consensus 179 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~ 235 (541)
..+...+.+|+ +.+.+.++. ....+|.++.|.+.|.+. +..|.+..|++..+
T Consensus 251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~la---d~~g~~~a~~v~~~ 302 (310)
T TIGR01272 251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLA---DCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHH---HhccchHHHHHHHH
Confidence 99999888875 455666665 566789999999999998 77788888875433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=103.99 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=126.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHH
Q 009185 353 NSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAV 432 (541)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (541)
.+....+.++...++..++.+++.|.+.||+|+|..+++|..++..+.+++++...+. .+++.=...
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~-------------~l~vAR~LQ 169 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP-------------MLFVARSLQ 169 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH-------------HHHHHHHHh
Confidence 3556778899999999999999999999999999999999999999999998866542 444555555
Q ss_pred HHHhccccccceeeecccCCchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Q 009185 433 SFFSIGLGPITWVYSSEIFPTKF-RAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPE 511 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (541)
+...........+++++.+|.+. |++++|+.-.+..+|-.++|++.|.+++..|++.+|++++.++++...+.++.++.
T Consensus 170 gvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 170 GVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 66666666677788999999864 79999999999999999999999999999999999999999999988887666654
Q ss_pred CCC
Q 009185 512 TKG 514 (541)
Q Consensus 512 ~~~ 514 (541)
++.
T Consensus 250 ~~~ 252 (464)
T KOG3764|consen 250 TEM 252 (464)
T ss_pred ccc
Confidence 443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-09 Score=103.86 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=107.7
Q ss_pred HhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcC
Q 009185 332 QASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLD 411 (541)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (541)
.....+.+..+.|.+.++.+. +..+.+.+..... ......+..|++.||+|+|+++.++.++..++.+++++.....-
T Consensus 39 ~~g~~y~fsv~s~~L~~~lgl-s~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 39 CTSFMYAFNLISGAMQARYNL-TQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334455666777776666554 4455554444432 33345667899999999999999999999999988887522100
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 009185 412 QSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMF 491 (541)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 491 (541)
. .+.+. +.+..+..+.+.....+.....+.+.+| +.||.+.|+......+|+++.+.+...+.. .++...+
T Consensus 117 ~---~s~~~----l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~f 187 (591)
T PTZ00207 117 E---GSVVR----LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYF 187 (591)
T ss_pred c---CcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH
Confidence 0 01122 2222222333333233334455677887 569999999999999999876666665554 3466677
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q 009185 492 FILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~ 512 (541)
++.+++.++..++.+.+++..
T Consensus 188 l~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 188 FFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHhheeCC
Confidence 777777777666666666544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=103.84 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=109.2
Q ss_pred HHHHhhhcCCChhHHHHHHHHHH-HHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHH--
Q 009185 93 ILYIRDNLNITSIQVEVLVGSLN-VCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM---GLA-PSFLFLMAGR-- 165 (541)
Q Consensus 93 ~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~a-~~~~~l~~~r-- 165 (541)
.+.+.+++|.++++.+++.+... ++..++.++.|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 312 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI 312 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34567789999999999987654 5688999999999999999998887777766554433 344 4566655554
Q ss_pred --HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHH
Q 009185 166 --VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFG 243 (541)
Q Consensus 166 --~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~ 243 (541)
+..|++.+...+....++.+.+|.+++ ++.+...++|..+++.+++.+. +..||+..|.+.++++++.++.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~---~~~G~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV---EAYGWPGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHHH
Confidence 456666777777777888888776554 4555556777776777888888 8899999999988887776655
Q ss_pred Hhc
Q 009185 244 VIA 246 (541)
Q Consensus 244 ~~~ 246 (541)
.+.
T Consensus 386 ~~~ 388 (402)
T PRK11902 386 LWL 388 (402)
T ss_pred HHH
Confidence 533
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-08 Score=97.86 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=127.6
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHHhccc--------H
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAAATFLLGALLMGLAPS--------F 158 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~~--------~ 158 (541)
+...+..++.+.+|.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. .
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 34556667778899999999999999998899999999999997 59999999999999999988877521 2
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccc---cchhhchHhHHHHHHHHHHHHHHHhhhcCC----CCcchhHHHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAM---TRGFLSSLPEVFINFGILLGYISNYALSGL----PEHINWRLMLG 231 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~----~~~~gwr~~f~ 231 (541)
...+++-.+..+|.|+.-|...+...|.++++ +|...+.++..+.++|+.+++.+..++... ....+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 34667788899999999999999999999754 366778888999999999998888887621 12347999999
Q ss_pred hhhHHHHHHHHHH
Q 009185 232 LAALPAIAVAFGV 244 (541)
Q Consensus 232 ~~~~~~~~~~~~~ 244 (541)
+.++..++.+++.
T Consensus 166 i~~i~m~ia~lvf 178 (654)
T TIGR00926 166 VPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776665544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=100.10 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=119.9
Q ss_pred HHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh----hcCCchHHHHh-HHHHHHHH
Q 009185 326 GVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLD----HFGRRPLLMLG-STGMAVSL 400 (541)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~ 400 (541)
....+...+++.....+.+.|+++.+. +....+.......+.+++..++.|+++| |+|||+.++.+ .....+++
T Consensus 10 ~~~~~Giq~~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l 88 (477)
T TIGR01301 10 ASVAAGVQFGWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAV 88 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 333444455566667777888877666 6677777888999999999999999999 59999988764 55555555
Q ss_pred HHHHHHhhhc----CC-CCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhh--hhhhHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYL----DQ-SDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFR--AQGSSLAISVNRLVSGI 473 (541)
Q Consensus 401 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~ 473 (541)
.++++..... +. ......+..+..+....+.....+... +...++++|..|+++| +.+.+..+...++|+.+
T Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 89 ILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5655533211 00 000111111222222222222222222 3346889999998755 67999999999999999
Q ss_pred HHHHHHHH--HHhh-------------cchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 474 VAMSFLSI--SRAV-------------TFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 474 ~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99888764 2211 4456788877777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=97.01 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ-LVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
++++.+.++...++..+= .......|.+.++.+. +..+ .+.+......+..+..+.+|++.||+|.|+++.++.+.
T Consensus 25 W~~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elgl-T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~ 101 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFR--PGESFITPYLLTVLNF-TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS 101 (511)
T ss_pred hhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCC-CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 444444444444443332 3334445655555555 4555 78799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
..+..+++++.... ..+.+.=++.|.+.+... ....++...+|++.|++++|+.+....+|.++++
T Consensus 102 Wsl~t~L~~fa~Sl-------------~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~ 167 (511)
T TIGR00806 102 FVCVWLLLLLGTSV-------------WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS 167 (511)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888875433 134444455555555555 6678888999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHH---HHHHHHHHHHHHHHHhhcccCC
Q 009185 476 MSFLSISRAVTFGGMF---FILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 476 ~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
++.+. +...||+... .+..+...++.+ ..+++|..+
T Consensus 168 ~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~-~a~~LP~~~ 206 (511)
T TIGR00806 168 VLGQL-LVTLGWISYSTLNIISLVFMTFSVF-LALFLKRPK 206 (511)
T ss_pred HHHHH-HHhcCchhHHHHHHHHHHHHHHHHH-HHHhCCCCc
Confidence 99998 5567776533 222233333333 345666433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=92.94 Aligned_cols=151 Identities=14% Similarity=0.077 Sum_probs=114.3
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHhhccc
Q 009185 95 YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLL-GALLMGLAPSFLFLMAGRVVSGIGVG 173 (541)
Q Consensus 95 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i-~~~~~~~a~~~~~l~~~r~l~G~~~g 173 (541)
.+++.||+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+ +-.+..| +++.=+++..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 67899999999999999999999999999999999999999877776555433 3333333 33444566778888877
Q ss_pred ccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh-hhHHHHHHHHHHhcC
Q 009185 174 YSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL-AALPAIAVAFGVIAM 247 (541)
Q Consensus 174 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~-~~~~~~~~~~~~~~~ 247 (541)
.........++...|+++.|.+.+..+...++|.++.|++++++.+-...+.|--.|.+ .+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66655677788888999999999999999999999999999999954333446555555 444455444444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=99.75 Aligned_cols=157 Identities=32% Similarity=0.489 Sum_probs=131.7
Q ss_pred hcccchhhhhHHHHhhhcCCCh--hHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhccc--H
Q 009185 83 GYDIGVMSGAILYIRDNLNITS--IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPS--F 158 (541)
Q Consensus 83 ~~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~--~ 158 (541)
.++........+.+..+++.+. ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.++.++..+ .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T COG0477 15 GLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94 (338)
T ss_pred HHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence 3566667788888888888766 48999999999999999999999999999999999888877777788888776 9
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCcc-ccchhhchHhHH-HHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPA-MTRGFLSSLPEV-FINFGILLGYISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ...+||+.|......
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHH
Confidence 9999999999999999999999999999987 688999998888 5888999999888877643 346899977665555
Q ss_pred HHHH
Q 009185 237 AIAV 240 (541)
Q Consensus 237 ~~~~ 240 (541)
....
T Consensus 174 ~~~~ 177 (338)
T COG0477 174 GLLL 177 (338)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=102.25 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=105.4
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVV 167 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l 167 (541)
....+|.+.++.|.+..+.+++.+...++..++.++.|++.||+ +||+.+..+.++.+++.++..+.++..... .-++
T Consensus 216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 44456766678899999999999999999999999999999999 567777888888888887777766543332 4578
Q ss_pred HhhcccccccchhhhhhhcCc-cccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 168 SGIGVGYSLMIAPVYTTEISP-AMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988887777765554 566788889888888899999999999998
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=119.35 Aligned_cols=143 Identities=22% Similarity=0.219 Sum_probs=123.6
Q ss_pred HHHhhhcCCChh-HHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q 009185 94 LYIRDNLNITSI-QVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGV 172 (541)
Q Consensus 94 ~~i~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~ 172 (541)
+++.+++|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356677999998 9999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred cccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 173 GYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 173 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
+...+...+++.+..|+++||+++++.+....+|.++++.+++.+.. ...++...|++.+.+.+
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888877652 12356666665444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=100.87 Aligned_cols=151 Identities=11% Similarity=-0.025 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSL 400 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 400 (541)
.+..+.+.++.............|.+.++.+ .+....+.....+.++..++.+..|++.||+|||+++..+..+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~-~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFT-LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3445555566666667777788888855554 567788888999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009185 401 AVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS 480 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (541)
+++...... ...+ .+.+..+..+.......+..+.++.|..|++.+...+++.+....+|..+++.+.+.
T Consensus 106 ~l~~~~~~a------~~~~----~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 106 ALFWPAAEI------MNYT----LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHhc------CCHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765321111 0011 222233333333333445555666777666766667999999999999999988765
Q ss_pred HH
Q 009185 481 IS 482 (541)
Q Consensus 481 ~~ 482 (541)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 44
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-06 Score=84.67 Aligned_cols=374 Identities=11% Similarity=-0.046 Sum_probs=193.8
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCC-ChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNI-TSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
+..+.++...+.-+.....+.+..+..- +---.+...-.-.+...++++..|.+.||..|.+++..+.+..-++..+++
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 4455566666666677777755555532 333344444445567778888999999999999998888776544433332
Q ss_pred h------c--c----cHHHH---HHHHHHHhh-cccccccchhhhhhhcC------ccccchhhchHhHHHHHHHHHHHH
Q 009185 154 L------A--P----SFLFL---MAGRVVSGI-GVGYSLMIAPVYTTEIS------PAMTRGFLSSLPEVFINFGILLGY 211 (541)
Q Consensus 154 ~------a--~----~~~~l---~~~r~l~G~-~~g~~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~ 211 (541)
. . . +-+.. ++.-.+.|. ..=.......++=.||. +++.+.+..+...-.--+..+++|
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaP 166 (432)
T PF06963_consen 87 ALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAP 166 (432)
T ss_pred HHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 1 11211 221122221 11111112222234443 234455566666666677899999
Q ss_pred HHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH-hcC----CCChHHHHhcCChHHHHHHHHHh-cCChhhHHHHHHHHH
Q 009185 212 ISNYALSGLPEHINWRLMLGLAALPAIAVAFGV-IAM----PESPRWLVMKGRFADAKQALIKT-SDSVEEAEFRLNEMT 285 (541)
Q Consensus 212 ~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~----~e~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 285 (541)
++.|.+. +..+.+...++.+...++..+.= +++ ...|. +..+++.++.+...... ...........+...
T Consensus 167 l~vG~l~---t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (432)
T PF06963_consen 167 LFVGLLM---TFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESSSESSSDPSILKRLW 242 (432)
T ss_pred HHHHHHh---hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccccccccccccchhhHHHHHH
Confidence 9999998 66788877776666655544321 111 22222 22222211111110000 000000000000100
Q ss_pred HHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHH
Q 009185 286 RTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIM 365 (541)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (541)
+... .....|+.. ++.+.+... +...+.++....+...+..|+...+. ++...+..-...
T Consensus 243 ~~~~-----------~~~~~w~~Y-------~~q~vflas-~alalLY~TVLsf~~lmt~yl~~~G~-s~~~igi~R~~g 302 (432)
T PF06963_consen 243 NPLR-----------TIIRGWRTY-------FRQPVFLAS-FALALLYFTVLSFGGLMTAYLKSQGY-SPSVIGIFRGLG 302 (432)
T ss_pred HHHH-----------HHhccHHHH-------HhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 0000 001122222 233333333 33333333344455566778887754 556666688888
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccccccee
Q 009185 366 GIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWV 445 (541)
Q Consensus 366 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (541)
.+.++.+.++..++.+|+|..+.=..+......+..+.......... ..+..... .++......=++.-++--...-
T Consensus 303 av~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~--~~~~~s~~-~l~~gi~~SR~GLW~fDL~~~q 379 (432)
T PF06963_consen 303 AVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS--PFSSISAY-LLLGGIALSRIGLWSFDLAVTQ 379 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC--CchhhHHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999998777666665554444333332222111 00112222 2222222222222233344456
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 446 YSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 446 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
++.|.+|+++||...|+-+...++...+--
T Consensus 380 i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 380 IMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred hhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999988655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=101.47 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhh
Q 009185 102 ITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPV 181 (541)
Q Consensus 102 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~ 181 (541)
.+....|.+.+..-+.-++.-.+..++.+|+|.|+.++++..+.++=-+++++++|.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccccchhhchHh-HHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHH-HHhcCCCC
Q 009185 182 YTTEISPAMTRGFLSSLP-EVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAF-GVIAMPES 250 (541)
Q Consensus 182 ~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~ 250 (541)
|+++.+|+|-.++...+. +.+.++|.++.+.++|.+. ++.|.+..|++.+.+.++..+ ..+.++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly---d~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY---DRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH---hhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998877777764 7788999999999999999 899999999887766665544 44445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=109.16 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=128.9
Q ss_pred HHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHh
Q 009185 328 NFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGS 407 (541)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
..+............++.+-++.+ .+....+.+.+.+.++..++.++.+++.||.+||+++.++.++.+++.+++++..
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~-lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFK-LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhC-CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 334333333444445555544444 4556677788899999999999999999999999999999999999999887764
Q ss_pred hhcCCCCC--------------------------------------chhHHHHHHHHHHHHHHHHHhccccccceeeecc
Q 009185 408 KYLDQSDI--------------------------------------KPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSE 449 (541)
Q Consensus 408 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (541)
....+... ......+..+++.-++.|++.....++..+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 22100000 0001122344556667777777788888999999
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHHHHHHHh
Q 009185 450 IFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV----------------------TFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 450 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
.+|++.|+...|+.+....+|..+++.+.+.+.+.+ +|+..|++.+++.++..+.. +
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~ 278 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-F 278 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999887543 14556777776666655544 3
Q ss_pred hccc
Q 009185 508 FLPE 511 (541)
Q Consensus 508 ~~~~ 511 (541)
+.++
T Consensus 279 ~~p~ 282 (633)
T TIGR00805 279 FFPK 282 (633)
T ss_pred hCcc
Confidence 4444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=96.65 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=98.7
Q ss_pred HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchh
Q 009185 115 NVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGF 194 (541)
Q Consensus 115 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 194 (541)
.+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-..+.+.-|..-+...+.+.+.++|.-|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34556788899999999999999999999999999998887654444444444444455566788899999999999999
Q ss_pred hchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCC
Q 009185 195 LSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPE 249 (541)
Q Consensus 195 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 249 (541)
..|.-+.+.-+|.++.|+++ ... ..+-..+..+.+.+.++..+...++|-
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~----e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRA----ELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHh----ccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999998 332 223334455556666666666666663
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.5e-08 Score=89.99 Aligned_cols=328 Identities=15% Similarity=0.057 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCcc
Q 009185 110 LVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPA 189 (541)
Q Consensus 110 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 189 (541)
+.-+-.+-..+..+.+.+..+|+..+.=+....++..+|.++.++++|.+.=+++-++.+++.|........+ +..+++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence 4444445556666677788899886555666777888899999999999999999999999999887777776 445653
Q ss_pred ccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhc-CCCChHHHHhcCChHHHHHHHH
Q 009185 190 MTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA-MPESPRWLVMKGRFADAKQALI 268 (541)
Q Consensus 190 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~ 268 (541)
...+-++.+.+.+.++|+..-..+.. -..+-|..+++..++.++.++.+++ +|.++.... ..+.+. ...
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~-~~~~~~-~~~-- 212 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRP-YQESES-EDE-- 212 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CcccCC-CCc--
Confidence 35677888888888888877666651 1234477777766665555554443 544321100 000000 000
Q ss_pred HhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhh-ccHHHH
Q 009185 269 KTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVY-YSPEVF 347 (541)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 347 (541)
.+++.. .. +....+.+...+..+++.++ ..++.++ ..+-.+..++..+.++. ..|...
T Consensus 213 -~~~~~~-------------~~-~~~~~~~~~~~~~~~~~k~~-----~~k~Ll~-ymiPL~lVY~aEY~InqGv~~tl~ 271 (402)
T PF02487_consen 213 -AEDDLL-------------ES-ETSESKPDSSSKLSFKEKLK-----RLKPLLW-YMIPLFLVYFAEYFINQGVAPTLL 271 (402)
T ss_pred -cccccc-------------cc-ccccccccccchhhHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHhchHHHhc
Confidence 000000 00 00000000111122222222 1122222 22333333333333322 222222
Q ss_pred -hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHH
Q 009185 348 -KDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVI 426 (541)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (541)
...........-+....+.++..+++--..+ +.-|++.+.. ++..+-++++.+...+. .......++
T Consensus 272 fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils-~LQ~~nl~~~~l~s~~~-------fipsi~ivf 339 (402)
T PF02487_consen 272 FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILS-LLQVINLVFLLLQSWYR-------FIPSIWIVF 339 (402)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHH-HHHHHHHHHHHHHHHHH-------HhhHHHHHH
Confidence 1222223333444555666665555543222 2233433332 22222222222221110 011233445
Q ss_pred HHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 427 AVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSI 481 (541)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 481 (541)
+.++..|..++......+..+.|-.|+++|..++|.....-.+|..++..+.-.+
T Consensus 340 ~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 340 VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566666666666666667777888999999999999998888777777665544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=99.95 Aligned_cols=150 Identities=10% Similarity=0.026 Sum_probs=126.8
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 009185 351 GINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCA 430 (541)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (541)
...+..+.+++.+....+.+++.+.+|++.||+|.|+++..+.++.+++.++..+...... + .+++.=+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~-------~----~~~~~R~ 136 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF-------Y----LLLVLRF 136 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc-------h----hhHHHHH
Confidence 3445666777999999999999999999999999999999999999999988888665421 1 3455555
Q ss_pred HHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 431 AVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA-VTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
+.|+......|....+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+.+.
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 666666667788889999999999999999999999999999999999999998 9999999999999888777766665
Q ss_pred cc
Q 009185 510 PE 511 (541)
Q Consensus 510 ~~ 511 (541)
.+
T Consensus 217 ~d 218 (466)
T KOG2532|consen 217 SD 218 (466)
T ss_pred cC
Confidence 54
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-09 Score=117.52 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=119.3
Q ss_pred hhHH-HHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc--------------
Q 009185 91 GAIL-YIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-------------- 155 (541)
Q Consensus 91 ~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-------------- 155 (541)
..+| ++.+.+|.++.+.|++.+.+.++.+++.++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI 325 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence 3455 4556689999999999999999999999999999999888777777777766666655543
Q ss_pred ------ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHH
Q 009185 156 ------PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLM 229 (541)
Q Consensus 156 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~ 229 (541)
++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.. ...++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~--~~~~~~~~ 403 (1140)
T PRK06814 326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA--LGFSIPWI 403 (1140)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHH
Confidence 6788888899999999999999999999999999999999999999999999999999888862 23466766
Q ss_pred HHhhhHH
Q 009185 230 LGLAALP 236 (541)
Q Consensus 230 f~~~~~~ 236 (541)
+++.+++
T Consensus 404 ~~~~~~~ 410 (1140)
T PRK06814 404 ILFIALA 410 (1140)
T ss_pred HHHHHHH
Confidence 6654444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=104.68 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=105.7
Q ss_pred hccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHH
Q 009185 341 YYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWA 420 (541)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (541)
..++.+..+.+.. . ...++.....++..+..++.|+++|.+|||+.++.+.++..++.++.+......
T Consensus 65 ~~l~~I~~diG~~-~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~---------- 132 (599)
T PF06609_consen 65 SILPYINADIGGS-D-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN---------- 132 (599)
T ss_pred HHHHHHHHhcCCC-c-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH----------
Confidence 3345556666653 3 333466778888999999999999999999999999999999998887654431
Q ss_pred HHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 009185 421 IALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAV 500 (541)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 500 (541)
.++....+.+.. .+...+....++|..|.+.|..+.++.....-....+++.+...+..+.+|++.|++.+.+..+
T Consensus 133 ---~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i 208 (599)
T PF06609_consen 133 ---TFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGI 208 (599)
T ss_pred ---HHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 222222222222 2222344455799999999988877666554444446666666666677899999998887777
Q ss_pred HHHHHHhhcc
Q 009185 501 GTVFFYFFLP 510 (541)
Q Consensus 501 ~~~~~~~~~~ 510 (541)
+.+..+++.+
T Consensus 209 ~~vl~~~fY~ 218 (599)
T PF06609_consen 209 ALVLIFFFYF 218 (599)
T ss_pred HHHHHHHHhC
Confidence 6665544443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=96.07 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=127.4
Q ss_pred hcccchhhhhHHHHhhhcC-CChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-ccHHH
Q 009185 83 GYDIGVMSGAILYIRDNLN-ITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-PSFLF 160 (541)
Q Consensus 83 ~~~~~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-~~~~~ 160 (541)
+..........+...+|.| .+....+.+.+...+.=...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+.
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3344445555666667777 677778888888778888888999999999999999999999999998888887 55544
Q ss_pred HHH----HHHHHhhcccccccchhhhhhhcCccccchhhchHhHH-HHHHHHHHHHHHHhhhcCCCCcch------hHHH
Q 009185 161 LMA----GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEV-FINFGILLGYISNYALSGLPEHIN------WRLM 229 (541)
Q Consensus 161 l~~----~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~~g------wr~~ 229 (541)
..+ ...++|+..+..+..+..++.+..|++.|+++.++++. ..++|.++|.+++|++. +++| |...
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~---~~~g~~~~~~~~~~ 376 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY---DAFGARGMFDWSAV 376 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHhcchhhhhHHHH
Confidence 333 34579999999999999999999999999999999876 47899999999999998 5544 4555
Q ss_pred HHhhhHHHHHHHHHH-hcCCCC
Q 009185 230 LGLAALPAIAVAFGV-IAMPES 250 (541)
Q Consensus 230 f~~~~~~~~~~~~~~-~~~~e~ 250 (541)
+.+.++..++..+++ ++++|+
T Consensus 377 ~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 377 FLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 555555555444433 334443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-08 Score=97.55 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred hHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCchHH-HHhHHHHHHHHHHHHHHhhhcC
Q 009185 338 AVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF-----GRRPLL-MLGSTGMAVSLAVLGLGSKYLD 411 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 411 (541)
......|.+.++.+.+ ..+.+..... .+...+ .++.|.++||+ |||+.+ +.+.++.++....+.+....
T Consensus 6 ~~~~~~~~~~~~~g~s-~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-- 80 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVS-LKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-- 80 (356)
T ss_pred hHHhHHHHHHHHcCCC-HHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc--
Confidence 4455678888887654 4555544333 444443 88999999998 788864 45555555554444432110
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 009185 412 QSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT----- 486 (541)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g----- 486 (541)
...+ .+....+..+.......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+
T Consensus 81 ----~~l~----~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 81 ----TDLP----LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred ----hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 0111 122222233344444456667888999999999999999999999999999999999888888
Q ss_pred ---chhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 487 ---FGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 487 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
|+..|++.+++.++..++.++..+|.+
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999998888777666555544456643
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=100.59 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=98.2
Q ss_pred hhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc----chhHHHHHH-HHHHHHHHHHHHHhcccHH-----
Q 009185 90 SGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC----IGRRYTIVL-AAATFLLGALLMGLAPSFL----- 159 (541)
Q Consensus 90 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~~~~i~~~~~~~a~~~~----- 159 (541)
-...+++..++|++....+.+--.-.+...+.+|+.|..+|| |||||.++. +.+...++.++.+++.++.
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 344556667899998888888888888899999999999995 898776555 5556677777777775543
Q ss_pred ------------HHHHHHHHHhhcccccccchhhhhhhcCccccchh-hchHhHHHHHHHHHHHHHHHhhh
Q 009185 160 ------------FLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGF-LSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 160 ------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
.++++--+.=++.-.....+.+++.|...++++.+ +.+++..+.++|..+|..++.+.
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34444445555666678889999999997666665 99999999999999998888754
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=99.63 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=116.4
Q ss_pred hhhhcccchhhhhHHHHhhh-cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc--
Q 009185 80 ILLGYDIGVMSGAILYIRDN-LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP-- 156 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~-- 156 (541)
++............+++.++ ++. +...+++..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~-~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~ 313 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGN-EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG 313 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcC-chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh
Confidence 33344455556566655555 454 46788889999999999999999999999999999999999999999998886
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCcc-------ccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPA-------MTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
|.+.+++.-++.|++.+...+...++++|..+. ++.|...++......+|..+++.+.+.+.
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998863 34578889999999999999988888775
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=100.59 Aligned_cols=128 Identities=17% Similarity=0.142 Sum_probs=103.1
Q ss_pred hhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 009185 91 GAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP--SFLFLMAGRVV 167 (541)
Q Consensus 91 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~~r~l 167 (541)
...|+ +++.+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l 328 (448)
T PRK09848 249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI 328 (448)
T ss_pred hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 34443 4445776665555555555677888999999999999999999999999888888877754 67777788889
Q ss_pred HhhcccccccchhhhhhhcCccc-------cchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAM-------TRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
.|+|.+...+...+++.|..+.+ ++|...++.+....+|..+|+.+.+.+.
T Consensus 329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888653 4588899999999999999998888765
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-06 Score=79.15 Aligned_cols=270 Identities=11% Similarity=0.038 Sum_probs=156.2
Q ss_pred HHHHhhhcCC-----ChhHHHHHHHHHHHHHHHH-HhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc----c------
Q 009185 93 ILYIRDNLNI-----TSIQVEVLVGSLNVCSLIG-SLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA----P------ 156 (541)
Q Consensus 93 ~~~i~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a----~------ 156 (541)
+-.+.+.+.+ +.+.+.++-+...+..++. .++.+++++|++|++++-.....+.+..+++++. +
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~ 105 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPT 105 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCc
Confidence 3446666655 3467889888887766666 8999999999999999988887777777776654 1
Q ss_pred ---------------------cHHHHHHHHHHHhhccccccc-chhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH
Q 009185 157 ---------------------SFLFLMAGRVVSGIGVGYSLM-IAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN 214 (541)
Q Consensus 157 ---------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 214 (541)
+.|...+.-+...+-.....+ .-..+++|.+..+|-.|..+++..+.++|.++++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 106 ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333333444444444444 6678899999999999999999999999999999888
Q ss_pred hhhcCCC-----CcchhH----HHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHH
Q 009185 215 YALSGLP-----EHINWR----LMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMT 285 (541)
Q Consensus 215 ~~l~~~~-----~~~gwr----~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (541)
.++.+.. ....|. +.+.+.++.+++...+.+++.+.. ..+++..+.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~-------------------- 242 (472)
T TIGR00769 186 KYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYNPAL-------------------- 242 (472)
T ss_pred HHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccchhh--------------------
Confidence 8876310 122452 233444444444333333321110 00000000000
Q ss_pred HHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchh---hHHHH
Q 009185 286 RTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ---LVGVT 362 (541)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 362 (541)
..++.+.+....+-++ ..++.|.+..+++...++......+..-.-..+.+..-++.+. .+...
T Consensus 243 ----------~~~k~k~k~~~~es~k---~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~ 309 (472)
T TIGR00769 243 ----------KEKKVKPKMSTMESLK---FLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFS 309 (472)
T ss_pred ----------ccccCCCCCCHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0011111222333332 2456677777666666665555555543344444444322222 23334
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 363 VIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 363 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
...++..++..++.+++.+|+|-+....+.-++..+
T Consensus 310 ~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 310 TWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445566666677779999999987665554444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=97.44 Aligned_cols=178 Identities=15% Similarity=-0.006 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCC----CCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHhHHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGI----NSKKQLVGVTVIMGIAKTSFVLISALYLDHF-GRRPLLMLGSTG 395 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~ 395 (541)
.++.+...=+.--+++|++...+..|+..... .+...+..++..+..-.-+..+++||++||+ |+|++++.+.++
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail 101 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL 101 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34455555566667778777777777765544 5666665577777777778889999999995 999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch--hhhhhhHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK--FRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~ 473 (541)
++++.++++...... ...+.+.......+.+..=|....++.|.+|++ .|-.+.++.++..++|+.+
T Consensus 102 ~~iGh~~L~~~~~~~-----------~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~ 170 (498)
T COG3104 102 MAIGHLVLAISSVSG-----------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI 170 (498)
T ss_pred HHHHHHHHhcccccc-----------ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH
Confidence 999999998754110 003444444445566666678888899999763 4677888889999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 474 VAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 474 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
+|.+.+++.++.||...|...++-..++.+..++..
T Consensus 171 ~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 171 APIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999888888777777766654443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=99.25 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=116.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHH
Q 009185 353 NSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAV 432 (541)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (541)
.+........+++.++.++|.++.|.++||+|||++++++.++..++.+..++..++. ...+.=++.
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~-------------~~~~~Rfl~ 181 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW-------------MFLIFRFLS 181 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH-------------HHHHHHHHH
Confidence 3445555578889999999999999999999999999999999999888777765542 455666666
Q ss_pred HHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 433 SFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
|++..+.......+..|.++++.|+.+..+ ......++.+++...+++.. +|++.+++......+..++ +++.+|.
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 777777778888999999999999999999 88888899999999998887 7888888887777766655 4555454
Q ss_pred C
Q 009185 513 K 513 (541)
Q Consensus 513 ~ 513 (541)
+
T Consensus 258 ~ 258 (521)
T KOG0255|consen 258 P 258 (521)
T ss_pred h
Confidence 3
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=71.07 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=75.4
Q ss_pred hhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHH
Q 009185 82 LGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFL 161 (541)
Q Consensus 82 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l 161 (541)
.+..+..+.|++|.+++|.++|.++.||+.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++++.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred H
Q 009185 162 M 162 (541)
Q Consensus 162 ~ 162 (541)
.
T Consensus 84 ~ 84 (85)
T PF06779_consen 84 S 84 (85)
T ss_pred h
Confidence 3
|
Note that many members are hypothetical proteins. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-08 Score=97.36 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=95.6
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHh
Q 009185 92 AILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL--APSFLFLMAGRVVSG 169 (541)
Q Consensus 92 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--a~~~~~l~~~r~l~G 169 (541)
..+++.++.--+++..+.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+ .++.+.+++..++.|
T Consensus 251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g 330 (444)
T PRK09669 251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN 330 (444)
T ss_pred hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 334443333223444455666677888889999999999999999999888776654443333 357778888899999
Q ss_pred hcccccccchhhhhhhcCcc-------ccchhhchHhHHHHHHHHHHHHHHHhhhcC
Q 009185 170 IGVGYSLMIAPVYTTEISPA-------MTRGFLSSLPEVFINFGILLGYISNYALSG 219 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 219 (541)
++.+...+...++++|..+. +..|...+..+....+|..+|+.+++.+.+
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988752 233556788888889999999999988763
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=97.31 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=101.5
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHh-----cccHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGL-----APSFLFLMA 163 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----a~~~~~l~~ 163 (541)
.....+++.++..-+....+++.+...++..++.+++++++||+|+|+.+..+.++..++.+...+ ..+.+.+++
T Consensus 250 ~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 329 (473)
T PRK10429 250 INGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVI 329 (473)
T ss_pred HhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH
Confidence 344444555544445667777888777889999999999999999999999888877766655433 346777777
Q ss_pred HHHHHhhcccccccchhhhhhhcCc-------cccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISP-------AMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
.-++.|++.+...+...+++.|..+ .++.|..++......-+|..+++.+.+++.
T Consensus 330 ~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 330 AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999865 333456888989999999999998888876
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=97.37 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=121.3
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHH
Q 009185 98 DNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA----------PSFLFLMAGRVV 167 (541)
Q Consensus 98 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a----------~~~~~l~~~r~l 167 (541)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+..+..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 5789999999999999999999999999999999999999999999999888664321 344455556788
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCC----CcchhHHHHHh-hhHHHHHHHH
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLP----EHINWRLMLGL-AALPAIAVAF 242 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----~~~gwr~~f~~-~~~~~~~~~~ 242 (541)
.+++.+........++.+..|++++|...++.....++|..+++.+++.+.+.. ++++.++...+ ..++.++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988311 12333444333 3344444444
Q ss_pred HHhcCCC
Q 009185 243 GVIAMPE 249 (541)
Q Consensus 243 ~~~~~~e 249 (541)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5557885
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.9e-08 Score=82.27 Aligned_cols=318 Identities=15% Similarity=0.108 Sum_probs=166.8
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVS 168 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~ 168 (541)
.+|..-++-+.++....++|.+.-.-.-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.+++|-.++++|.+.
T Consensus 56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhh
Confidence 34555566778888899999888887778888899999999999999976665555554443 23468999999999999
Q ss_pred hhcccccccchhhh-hhhcCccccchhhchHhHH--------HHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 169 GIGVGYSLMIAPVY-TTEISPAMTRGFLSSLPEV--------FINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 169 G~~~g~~~~~~~~~-i~~~~~~~~r~~~~~~~~~--------~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
|++.+..+.+--++ +.|.. ++|+.-.-+... +.++-.+++.+.+-.+.+.. ..|--.+|-..+.+..+
T Consensus 135 GiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~-slGPVAPFdAAacfLai 211 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF-SLGPVAPFDAAACFLAI 211 (454)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh-ccCCCCchHHHHHHHHH
Confidence 99999888877664 56654 344432222221 22222333333333333100 12344455543333222
Q ss_pred -HHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 240 -VAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 240 -~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
.+++.-- |-..-+++.+.++-+....+ . .+. ...
T Consensus 212 gmAvil~~------W~ENygdps~~kdlltqf~g--------------a------------------a~a-------iaS 246 (454)
T KOG4332|consen 212 GMAVILSS------WSENYGDPSENKDLLTQFKG--------------A------------------ARA-------IAS 246 (454)
T ss_pred HHHHHHhh------hhhccCChhhhHHHHHHhhH--------------h------------------HHH-------Hhc
Confidence 2322211 22222222222221111100 0 000 011
Q ss_pred H-HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hHHHHhHHH
Q 009185 319 R-ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRR--PLLMLGSTG 395 (541)
Q Consensus 319 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~ 395 (541)
+ +...+-.+...+-...+.....|.|..-.+. ....-|.++..+.+..++|+-+..++..|-..| ..+.+.+.+
T Consensus 247 D~ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~v 323 (454)
T KOG4332|consen 247 DEKIALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLV 323 (454)
T ss_pred chHHHHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHH
Confidence 1 1222222333333334444455656442111 112234467777788888888877776654433 445555555
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAI 464 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 464 (541)
.++.+.+...... ..++...+.. .++.++.+-.. .+..+|...-+-.+..|.+.|++.+-.+.
T Consensus 324 s~a~l~Lpilt~~-vsP~kes~~~----s~i~F~~~E~c-vGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 324 SIAALLLPILTSS-VSPSKESPSE----SLIGFCLFEAC-VGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHhc-cCCCcCCchH----HHHHHHHHHHH-HhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 5555444444333 2222222211 22333333322 23344666677788889998877654443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=90.68 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=115.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHH
Q 009185 353 NSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAV 432 (541)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (541)
......+...+.+.++.+++.+.++.+.||++..+.+....++..+..++-.....+ ..+++.=++.
T Consensus 78 ~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~-------------~~~ialr~ll 144 (495)
T KOG2533|consen 78 LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSF-------------PGLIALRFLL 144 (495)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHH
Confidence 344556668889999999999999999999995555544433333322222222221 1456667777
Q ss_pred HHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HhhcchhHHHHHHHHHHHHHHHHH
Q 009185 433 SFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSIS------RAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
|++..+..|....++...+.+++|+.-+|+.++..++|+++|+.+...+. ...||++.|++-+++.++..++++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 88888888999999999999999999999999999999999999988863 356899999999999999999888
Q ss_pred hhcccCCC
Q 009185 507 FFLPETKG 514 (541)
Q Consensus 507 ~~~~~~~~ 514 (541)
+++|+...
T Consensus 225 ~~lp~~P~ 232 (495)
T KOG2533|consen 225 FFLPDNPS 232 (495)
T ss_pred EEecCChh
Confidence 88886543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=78.91 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=88.7
Q ss_pred HHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhc-----cchhHHHHHH-HHHHHHHHH
Q 009185 76 STNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSD-----CIGRRYTIVL-AAATFLLGA 149 (541)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~i~~ 149 (541)
.+-+.+.+.-.+... .+|.+.+.-|+|.++.+...-++. -...-++|.++.| |+||||.-++ +..+.+..+
T Consensus 37 l~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~m 113 (510)
T KOG3574|consen 37 LFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFM 113 (510)
T ss_pred HHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHH
Confidence 344567777777777 899998888998888765544332 1234567888888 9998875433 444433333
Q ss_pred HHHHh-----------cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHh
Q 009185 150 LLMGL-----------APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNY 215 (541)
Q Consensus 150 ~~~~~-----------a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 215 (541)
.+.+. .+|...+....++.-+..+.--.+.-.+.-.+..+++-|.+......+...|..++..+--
T Consensus 114 llLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 114 LLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 33332 2344444445566666666666666666677778888888888877777777777754433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-06 Score=81.87 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=124.3
Q ss_pred hhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhccc---------
Q 009185 88 VMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAPS--------- 157 (541)
Q Consensus 88 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~~--------- 157 (541)
....++.++.++++.+...+.-..+.+.-......+.++.++|-| ||-+.+.++.++..+|.++..++..
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 356778899999999888888889999988999999999999975 8999999999998888666544321
Q ss_pred ----------------HHHHHHHHHHHhhcccccccchhhhhhhcCc---cc-c--chhhchHhHHHHHHHHHHHHHHHh
Q 009185 158 ----------------FLFLMAGRVVSGIGVGYSLMIAPVYTTEISP---AM-T--RGFLSSLPEVFINFGILLGYISNY 215 (541)
Q Consensus 158 ----------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~-~--r~~~~~~~~~~~~~G~~~g~~~~~ 215 (541)
...++.+.-+..+|.|+.-+...++-+|-++ ++ + +...+.++....++|..++..+..
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 2356677788889999999999999999997 32 2 236778888899999999988888
Q ss_pred hhcCCCCcchhHHHHHhhhHHHHHHHHHHh
Q 009185 216 ALSGLPEHINWRLMLGLAALPAIAVAFGVI 245 (541)
Q Consensus 216 ~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~ 245 (541)
+.. ++.+|.+.|.+..+..++.+++++
T Consensus 216 yiq---~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 216 YIQ---DNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hhh---hcccceeeccHHHHHHHHHHHHHH
Confidence 876 788999999886666555554443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.8e-07 Score=89.33 Aligned_cols=139 Identities=18% Similarity=0.119 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 009185 359 VGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIG 438 (541)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (541)
+++.+...++..++.++.|+++|++|||+.++++.+...++.++.+++.+.. .+.+.=++.|+..++
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~-------------~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY-------------QLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH-------------HHHHHHHHhccchhh
Confidence 6688999999999999999999999999999999999999999998866431 333434444444444
Q ss_pred ccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 439 LGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV--TFGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
...+...+.+|..|++.||...+.......+|..++ .+.+....+. +|+..+.+....+++..+. .++.||+
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 456777899999999999999999998888766666 6666665553 7887777777766666666 5677764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-08 Score=94.63 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=134.1
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Q 009185 93 ILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGV 172 (541)
Q Consensus 93 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~ 172 (541)
+=.-.+|.+..+...|........|-.+.-++.+++..|+|+-+++.+++....+=.+..++.+|.|+.+..-+++|+..
T Consensus 394 LfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ 473 (618)
T KOG3762|consen 394 LFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH 473 (618)
T ss_pred HHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH
Confidence 33456777877777887777888888999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcCccccchhhchHhHH-HHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhc
Q 009185 173 GYSLMIAPVYTTEISPAMTRGFLSSLPEV-FINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIA 246 (541)
Q Consensus 173 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 246 (541)
+..+.++.+|++...|++-|..+.++.+. ..++|-.+|.++||.+. +.+|=|..|.+.++.+++.++....
T Consensus 474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v---~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV---ERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh---eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998855 56899999999999999 8899999999988887776665443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-07 Score=87.25 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=130.6
Q ss_pred HHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHH--------HHHHH-HHHHHHHHhhhhhhhccchhHHHHHH
Q 009185 70 TGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEV--------LVGSL-NVCSLIGSLAAGKTSDCIGRRYTIVL 140 (541)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~--------~~s~~-~~~~~~~~~~~g~l~dr~Grr~~~~~ 140 (541)
..++..+...|+.-......+.....+.+.+++.+.+... ...+. ..++..+..+...+.|++|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3344555556655555555566666777877765543322 11111 22333466677889999999999999
Q ss_pred HHHHHHHHHHHHHhccc--------HHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHH
Q 009185 141 AAATFLLGALLMGLAPS--------FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYI 212 (541)
Q Consensus 141 ~~~~~~i~~~~~~~a~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~ 212 (541)
|.+++++..+..++..| ...+.+..++.-+| -......+.+|.+|.+-|+..-|+..+..-+|.++|..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999998877 23333444555554 33455677899999999999999999999999999988
Q ss_pred HHhhhcC--CCCcchhHHHHHhhhHHHHHHHHHHhcCCCCh
Q 009185 213 SNYALSG--LPEHINWRLMLGLAALPAIAVAFGVIAMPESP 251 (541)
Q Consensus 213 ~~~~l~~--~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p 251 (541)
.-..+.+ .+...+-|+.|++.+.+.++..+..+++||+.
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 8888772 12267899999999999999999999999984
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-06 Score=77.05 Aligned_cols=376 Identities=12% Similarity=0.106 Sum_probs=203.7
Q ss_pred HHHHh-hhcCCChhHHH-HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhh
Q 009185 93 ILYIR-DNLNITSIQVE-VLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGI 170 (541)
Q Consensus 93 ~~~i~-~~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~ 170 (541)
.|++. .+.|++..++. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.....-++.-+.++.+.+-+.-++.|.
T Consensus 28 tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~ 107 (433)
T KOG3810|consen 28 TPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGP 107 (433)
T ss_pred chhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcCh
Confidence 34443 45566666553 12222333455555566678999999999998888777888888899999999999999999
Q ss_pred cccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCC
Q 009185 171 GVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPES 250 (541)
Q Consensus 171 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~ 250 (541)
..+ ...+-++++-+..+++++.++.+...++.-.|...|..++-.+.+. +..+.+..-.+......+..+..+++|..
T Consensus 108 ~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v 185 (433)
T KOG3810|consen 108 ATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRV 185 (433)
T ss_pred HHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCC
Confidence 876 5567889999999999999999999999999998888888888732 22344444444444444455566778777
Q ss_pred hHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHH
Q 009185 251 PRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFF 330 (541)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (541)
++.+..+.+.++.. ..+.++.+. +....+... ..++.+..+.....++|.+....+.+.
T Consensus 186 ~rSl~f~~~~~~~~--v~~~e~~~~--~~~~~~~l~-----------------~~~~~l~~~l~~~y~np~ll~WSlWwA 244 (433)
T KOG3810|consen 186 KRSLYFHRLEDKIS--VGDLEEMNP--QASYMSYLR-----------------GAFVLLWRDLQECYSNPRLLKWSLWWA 244 (433)
T ss_pred chhhhhhcccccce--eccchhcCc--cchhhHHHH-----------------HHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence 65544433332111 111110000 000000000 001111111112334445555555555
Q ss_pred HHhhhhhhHhhccHHHHhhcCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhh
Q 009185 331 MQASGNDAVVYYSPEVFKDAGINS-KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKY 409 (541)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (541)
+...+++-+..|....-.+..-.+ ...-|..=.+..+.++++.+..|++.-++.|..-+.++..-...+.+++.+...
T Consensus 245 l~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t- 323 (433)
T KOG3810|consen 245 LASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT- 323 (433)
T ss_pred HhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc-
Confidence 566666666666655555543111 112222445566777788888888876666643333222222222222222111
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 009185 410 LDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT--- 486 (541)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--- 486 (541)
..-|. .-....++...+.... ++...-+++....+.-|...|+..++.-+...+...+ ..|..|
T Consensus 324 ------~~Iw~---~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L 390 (433)
T KOG3810|consen 324 ------QHIWV---CYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGL 390 (433)
T ss_pred ------cceeh---hhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCC
Confidence 01122 2222222222222222 2223334455566777888887766555444333322 223222
Q ss_pred --------chhHHHHHHHHHHHHHHHH
Q 009185 487 --------FGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 487 --------~~~~~~~~~~~~~~~~~~~ 505 (541)
|..-|.+.+++.++...+.
T Consensus 391 ~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 391 DIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred CcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 2234666676666665554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-09 Score=109.28 Aligned_cols=158 Identities=20% Similarity=0.170 Sum_probs=102.8
Q ss_pred hhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH--h--cc------cH
Q 009185 89 MSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG--L--AP------SF 158 (541)
Q Consensus 89 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--a~------~~ 158 (541)
.....+.+.+..+.+.. -+......+...++.++...+.||+|||+.++.+.++.+++.+..+ . .. ++
T Consensus 272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445667777777665 2222233345556677777999999999999999999888888775 1 11 12
Q ss_pred HHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHhhhHHH
Q 009185 159 LFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-WRLMLGLAALPA 237 (541)
Q Consensus 159 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~~~~~~ 237 (541)
..+............+..+....+..|.+|.+.|+++.++......++..+++.+...+. +..+ +...+...++..
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF---NNLGGWGVFLIFAGVCL 426 (451)
T ss_pred ccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccchhhHHHHH
Confidence 222222221111122345667788899999999999999998888888888887777666 4444 333333344444
Q ss_pred HHHHHHHhcCCCCh
Q 009185 238 IAVAFGVIAMPESP 251 (541)
Q Consensus 238 ~~~~~~~~~~~e~p 251 (541)
+..++..+++||+.
T Consensus 427 i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 427 IAIIFVYFFLPETK 440 (451)
T ss_pred HHHhheeEEEeeCC
Confidence 44455667799983
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=77.85 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=98.1
Q ss_pred HHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHh
Q 009185 328 NFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGS 407 (541)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
.........+.+..|.|.+-+..+. +..+...+.....++..+ .+..|.+.|++|++.++.++.+...++..++....
T Consensus 10 ~v~~~~Gt~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 10 WVQLCSGTTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HHHHhcCcccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556778888898988776665 444444466666777765 48889999999999999999999999998887755
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 408 KYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
...-. ..+.|. +.+..+..+...............+.+|. .||++.|+.-....+++++-..+...+...
T Consensus 88 ~~~i~--~~~~~~----~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 88 SGRIP--SLPVWL----MCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred hCccC--ccchHH----HHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 43211 011222 12222222222222222222334577785 699999999999999999988888777655
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.7e-06 Score=75.95 Aligned_cols=170 Identities=19% Similarity=0.148 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHH
Q 009185 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFL 146 (541)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~ 146 (541)
.|.+.+...+..+.. ...-.=+|.+..|-|+|..+.|++.+...+.....++....+++|. .+|+..+.....+.
T Consensus 210 aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 210 AWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred hHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 455444444444432 2345557889999999999999999999999999999999999975 47888888888888
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCcccc-chhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch
Q 009185 147 LGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMT-RGFLSSLPEVFINFGILLGYISNYALSGLPEHIN 225 (541)
Q Consensus 147 i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g 225 (541)
+|...+.+.+.-..++- -++.|+|.|+.++.+..++.+..+..+ -++-.++.+....+=..+||.+.|++-+ ...+
T Consensus 286 ~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD--a~gs 362 (395)
T COG2807 286 VGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD--ATGS 362 (395)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH--hcCC
Confidence 88888888775443333 499999999999999999999886544 3445555555555556778999998874 2347
Q ss_pred hHHHHHhhhHHHHHHHHHH
Q 009185 226 WRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 226 wr~~f~~~~~~~~~~~~~~ 244 (541)
|+...+..+...++..+.-
T Consensus 363 w~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 363 WSAPLVLLALATLLMLIFG 381 (395)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9998887666666555433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-06 Score=80.27 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=104.4
Q ss_pred chhhhhHHHH-hhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc--cHHHHHH
Q 009185 87 GVMSGAILYI-RDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP--SFLFLMA 163 (541)
Q Consensus 87 ~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~ 163 (541)
...+....+. .--+|.++.+..+.......+..++.+++.++.+|+|+|+++..+.++..++.++.-+.+ +.+..++
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~ 332 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV 332 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 3344444433 333566666777788888888888899999999999999999999999999999998876 7889999
Q ss_pred HHHHHhhcccccccchhhhhhhcCcc-------ccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPA-------MTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
..++.++|.+...+...++++|...- +.-|...+......=+|.+++..+.++..
T Consensus 333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877632 23366677777777788888876666665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-06 Score=78.25 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=126.0
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhc-cchhHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHHHHHh
Q 009185 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSD-CIGRRYTIVLAAATFLLGALLMG---LAPSFLFLMAGRVVSG 169 (541)
Q Consensus 94 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~---~a~~~~~l~~~r~l~G 169 (541)
|+=.+-||.+..|..-+...+..|..++-...|++.. |.++|+...+|+...+++..+.. ...+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4455678999999999999999999999999999888 67888888888888777766644 4468899999999999
Q ss_pred hcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC-------CCcchhHHHHHhhhHHHHHHHH
Q 009185 170 IGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL-------PEHINWRLMLGLAALPAIAVAF 242 (541)
Q Consensus 170 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~~gwr~~f~~~~~~~~~~~~ 242 (541)
++.|.......+...+...+++-|..+|.+.....+...++..+++.+.+. ....++-.+|.+.++..++.++
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988751 1335677788876666665554
Q ss_pred HH
Q 009185 243 GV 244 (541)
Q Consensus 243 ~~ 244 (541)
+.
T Consensus 393 ll 394 (403)
T PF03209_consen 393 LL 394 (403)
T ss_pred HH
Confidence 44
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-06 Score=81.71 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccccccee
Q 009185 366 GIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWV 445 (541)
Q Consensus 366 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (541)
++..++.++..|.++||+|||..+......+.+....+.+... | .++ .....+. ........++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~----------~----~~~-~~~l~g~-~~~~~s~~~a 135 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGY----------W----FFL-LLGLSGG-FSAIFSVGFA 135 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH----------H----Hhh-hcccccc-hhhhhhhhhh
Confidence 6788889999999999999999998888887777777665331 1 111 1111121 2222345678
Q ss_pred eecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 009185 446 YSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLE 518 (541)
Q Consensus 446 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (541)
++++....+.|....|+.+.....+..++|.+.+.+....|+...+.+..+..++..+...+++||+..++.+
T Consensus 136 ~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 136 YVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred heeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999998999987665443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=84.01 Aligned_cols=190 Identities=11% Similarity=0.019 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-chHHHHhHHH
Q 009185 318 RRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAG-INSKKQLVGVTVIMGIAKTSFVLISALYLDHFGR-RPLLMLGSTG 395 (541)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~ 395 (541)
.+|.++...+..+.....+.....-.-.|+++.. .-+.+..|+..+...++..++.+..|+...|.+. |+.++++.++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 3455666667777666666665555556666632 2345566778888999999999999999999986 8899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVA 475 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 475 (541)
++++.++........+. +. .+...+=+..+++.+.....-.|+++..-.+.|.++++..+...-+|..+||
T Consensus 112 ~~~g~llY~~l~~~~~~------~~---y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp 182 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNG------VK---YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP 182 (488)
T ss_pred HHHHHHHHHHHHhcccc------hH---HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence 99999998554443211 11 1222222222333333345567778776677788888888887777777777
Q ss_pred HHHHHHHHh--h-----------cchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 009185 476 MSFLSISRA--V-----------TFGGMFFILSGITAVGTVFFYFFLPETKGKS 516 (541)
Q Consensus 476 ~~~~~~~~~--~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (541)
.+...+..- . -|..+-++++.+.++..++..++.+|..+..
T Consensus 183 ~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 183 TIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 666544321 1 1445778888888888888888888765443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=75.36 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=78.1
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhh--cCCChhHHHHHHHH---HHHHHHHHHhhhhhhhccchhHHHHHH-HHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDN--LNITSIQVEVLVGS---LNVCSLIGSLAAGKTSDCIGRRYTIVL-AAATFLLG 148 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~---~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~ 148 (541)
+.+-+++++.-.+.....+|.+.++ -++|.+|.+.+.-+ |++=..-+.++=.....|+||||.-++ .-.+.++.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~ 84 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL 84 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence 3445677777776666778888887 67888887754322 122222222333344558999886443 22333333
Q ss_pred HHHHHhcc------------------------cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHH
Q 009185 149 ALLMGLAP------------------------SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFIN 204 (541)
Q Consensus 149 ~~~~~~a~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 204 (541)
.+..+... +...+...-++.=+-.+---.+.-.+.-....+++++.+......+.+
T Consensus 85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~ 164 (544)
T PF13000_consen 85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQT 164 (544)
T ss_pred HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhh
Confidence 33322211 111222222222222333333344444555677889998888888888
Q ss_pred HHHHHHHHHHhhhc
Q 009185 205 FGILLGYISNYALS 218 (541)
Q Consensus 205 ~G~~~g~~~~~~l~ 218 (541)
+|..++..+--.+.
T Consensus 165 ~Gyfls~tvFlaln 178 (544)
T PF13000_consen 165 AGYFLSFTVFLALN 178 (544)
T ss_pred hhHHHHHHHHHhhC
Confidence 88888766554443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-06 Score=81.99 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=110.6
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----cCCchH-HHHhHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH----FGRRPL-LMLGSTGMAVS 399 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~ 399 (541)
..+.-+........+..|+..|+.+..+.++..++.++.+.-+...+.-++.|+++|| +|||+. ++++.+.++++
T Consensus 14 Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~ 93 (460)
T PRK11462 14 YGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV 93 (460)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence 3344444455556667788888888888889999989999999999999999999997 476554 45566666666
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCC-chhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFP-TKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+.++...... +.. .......+...++..++.....| ..++..|..+ +++|++..+.-.....+|+.+++.+.
T Consensus 94 ~~llf~~p~~-----s~~-~~~~y~~~~~~~~~~~~t~~~ip-y~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 94 CVLAYSTPDL-----SMN-GKMIYAAITYTLLTLLYTVVNIP-YCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHhCCCC-----Ccc-hHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332111 111 11111222222222222222222 2356667665 67899999999999998888887776
Q ss_pred HHHHHhhc-------chhHHHHHHHHHHHHHHHHHhhcccC
Q 009185 479 LSISRAVT-------FGGMFFILSGITAVGTVFFYFFLPET 512 (541)
Q Consensus 479 ~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (541)
..+....| |.....+++++.+++..+++...+|+
T Consensus 167 ~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 167 MPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 66655433 44444555555555554544444443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.5e-06 Score=66.79 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCc
Q 009185 109 VLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISP 188 (541)
Q Consensus 109 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 188 (541)
.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 44556667778888889999999999999999999998655444 56788999999999999999999999999999999
Q ss_pred cccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 189 AMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 189 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
+++|++..+++-.....+.++|.++...+.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888877766554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.3e-06 Score=76.81 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=124.5
Q ss_pred hhhhhhcccchhhhhHHHHhhh-cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcc
Q 009185 78 NSILLGYDIGVMSGAILYIRDN-LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP 156 (541)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~ 156 (541)
+.|++.-........++.+.+| .|.+..+.....+.+..+..+|.++..++..|+-..|++.+..+...+-.+..++++
T Consensus 244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355444555666666655555 888999999999999999999999999999999999999999998888888999999
Q ss_pred cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 157 SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
+...+. +-++.|+..+..+|...++..+..+ ++ ....|..-....+|.++-|.+.|++. +..|-...+.....+
T Consensus 324 g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~---d~~g~~~~~~~~pll 397 (422)
T COG0738 324 GVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIA---DMFGIQLTFLIVPLL 397 (422)
T ss_pred ChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHH---HhhhhHHHHHHHHHH
Confidence 855444 5678899999999999999999998 33 33444445566778888899999998 788888877754455
Q ss_pred HHHHH
Q 009185 237 AIAVA 241 (541)
Q Consensus 237 ~~~~~ 241 (541)
+.+.+
T Consensus 398 c~lyV 402 (422)
T COG0738 398 CYLYV 402 (422)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-06 Score=60.01 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=55.8
Q ss_pred hhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH
Q 009185 80 ILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF 145 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 145 (541)
++.....+.+.|.+|...++.|+|+.++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 444445566778888888889999999999999999999999999999999999988877766554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=77.89 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc--c-c------HHHHHHHHHHHhhcccccccchhhhhhhcCccc---cchhhchHhHHHH
Q 009185 136 YTIVLAAATFLLGALLMGLA--P-S------FLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAM---TRGFLSSLPEVFI 203 (541)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~~a--~-~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 203 (541)
|.+++|.+++.+|.++..++ + . .+.++++-++.++|.|+.-|....++.|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999884443 2 2 367899999999999999999999999999765 4667888999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcC
Q 009185 204 NFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 204 ~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
++|..++..+.+++. ++.||.+.|.+.++..++..+.++.-
T Consensus 82 n~G~~~~~~~~~~i~---~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ---QNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHH---HCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhc---cccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999998 88999999999888777776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.21 E-value=6e-05 Score=77.31 Aligned_cols=167 Identities=14% Similarity=0.029 Sum_probs=111.3
Q ss_pred hhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHhHHHHHHHHHHHHHHhhhcCCCC
Q 009185 336 NDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH-FGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD 414 (541)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
++++...+..|+.+..+.+...+..+...+....-+..+++|++.|+ +|+++.+.++.++..++..++.+......
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~--- 79 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS--- 79 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc---
Confidence 44555555666665555555555556666677777788899999997 69999999999999998888876432110
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 009185 415 IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK---FRAQGSSLAISVNRLVSGIVAMSFLSISRAV------ 485 (541)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 485 (541)
.. .+. ....+....+...+..+.-|...+...|.++++ .+-....+++...++|+.+++.+.+.+.+..
T Consensus 80 ~~-~~~-~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 80 GH-PLH-DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred cc-chH-HHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 00 011 112233333444555555577777778777643 4677888899999999999999999887543
Q ss_pred -cchhHHHHHHHHHHHHHHHHHh
Q 009185 486 -TFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 486 -g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
+|...|.+.+++.+++.++...
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777666665443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00034 Score=68.38 Aligned_cols=117 Identities=8% Similarity=-0.066 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hHHHHhHHHHHHHHHHHHHHhhhcCCC---CCchhHHHHHHHHHHHHHH
Q 009185 357 QLVGVTVIMGIAKTSFVLISALYLDHFGRR-PLLMLGSTGMAVSLAVLGLGSKYLDQS---DIKPAWAIALCVIAVCAAV 432 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 432 (541)
..-.....+.++..+|+.+..+.. ..++| +.+.+..+.=.+..-++.++....+.. --...+..... .+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~----~~l~ 382 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIIL----MLLF 382 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHH----HHHH
Confidence 334467788999999998665431 11222 133333333333333322222111000 01122332223 3333
Q ss_pred HHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 433 SFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
++.++...+..+.+..+.+++++|..+..+...+-.+|-.+|..+.
T Consensus 383 gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 383 GFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444456677778888888888888888887777777666543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0024 Score=60.25 Aligned_cols=177 Identities=12% Similarity=-0.022 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHH----HHhhhhhhhccchhHHHHHHHHH
Q 009185 68 ALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLI----GSLAAGKTSDCIGRRYTIVLAAA 143 (541)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~----~~~~~g~l~dr~Grr~~~~~~~~ 143 (541)
...+.++..++.. ..+..+....++..+++--+.. .......+.+...+ ....-..+.-|. |+++.....+
T Consensus 19 v~~i~~llGiG~L---lpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~ 93 (406)
T KOG1479|consen 19 VYLIFLLLGIGTL---LPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSL 93 (406)
T ss_pred HHHHHHHHhcccc---cchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3333344444433 4666777788888887754433 33344444444443 444444444452 2222222222
Q ss_pred HHHHHHHHHHhc---------ccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHH
Q 009185 144 TFLLGALLMGLA---------PSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISN 214 (541)
Q Consensus 144 ~~~i~~~~~~~a---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~ 214 (541)
...+..+.+.++ ..++..++.-.+.|++.|......+...++ +|++.-+-.++=...+..+-+++- ++.
T Consensus 94 ~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~-i~t 171 (406)
T KOG1479|consen 94 IAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLR-ILT 171 (406)
T ss_pred HHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHH-HHH
Confidence 222222222222 246677777888899888887777777665 566554433332222222222222 222
Q ss_pred hhhcCCCCcchhHHHHHhhhHHHHHHHHHHhcCCCChH
Q 009185 215 YALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPR 252 (541)
Q Consensus 215 ~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~ 252 (541)
.+..+- ...+=-.-|.+..+..++..+.+..+|..|.
T Consensus 172 ka~~~~-~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 172 KAAFSD-SRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHhcCC-CCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 222210 1112222344455555555555566777664
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0087 Score=57.58 Aligned_cols=270 Identities=12% Similarity=0.045 Sum_probs=149.2
Q ss_pred HHHHhhhcCC---ChhHHHHHHHHHHH-HHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc---------cc--
Q 009185 93 ILYIRDNLNI---TSIQVEVLVGSLNV-CSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA---------PS-- 157 (541)
Q Consensus 93 ~~~i~~~~~~---s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a---------~~-- 157 (541)
+-.+.+.+.+ ++..+.++-+..-+ +..+..++.+++.+++.|.+++-.-+..+....+++++. ++
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~ 125 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPE 125 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHH
Confidence 3445566544 45667777777777 678889999999999999999988888888777777763 11
Q ss_pred ---------------------HHHHHHHHHHHhhccccccc-chhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHh
Q 009185 158 ---------------------FLFLMAGRVVSGIGVGYSLM-IAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNY 215 (541)
Q Consensus 158 ---------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 215 (541)
.|...+.-++.=+=...... .-.....|.+..+|-.|..++++.+.+++..++..+..
T Consensus 126 ~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 126 FSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222221111222 23455688888889999999999999999999988888
Q ss_pred hhcCCCCc-------chhHHHHHhhhHHHHHHHHHHhcC----CCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHH
Q 009185 216 ALSGLPEH-------INWRLMLGLAALPAIAVAFGVIAM----PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEM 284 (541)
Q Consensus 216 ~l~~~~~~-------~gwr~~f~~~~~~~~~~~~~~~~~----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (541)
++.+..+. ..-+..+.+.++.+++...+..++ .+.|.....+.+
T Consensus 206 ~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~------------------------- 260 (509)
T COG3202 206 WLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK------------------------- 260 (509)
T ss_pred HHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc-------------------------
Confidence 88731111 113334444444444444444332 333332211000
Q ss_pred HHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchh---hHHH
Q 009185 285 TRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ---LVGV 361 (541)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 361 (541)
.+++.+.+-...+.++ ...+.|.++.+.+...++..+...+...--.-.....-..... .+..
T Consensus 261 -----------kk~~~k~k~~~~~s~k---~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~ 326 (509)
T COG3202 261 -----------KKKKKKLKLGLIESFK---MILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRF 326 (509)
T ss_pred -----------ccccccccCcHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHH
Confidence 0001111122222222 2456777777777776665555444332222222211111111 2223
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 362 TVIMGIA-KTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 362 ~~~~~~~-~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
....++. .++....++.+.+|.|-....++.-+.+.++.+
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~ 367 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGV 367 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344444 555667788889998877665555555444433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0046 Score=61.04 Aligned_cols=258 Identities=14% Similarity=0.091 Sum_probs=140.7
Q ss_pred ChhHHHHHHHHHHH-HHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc---------c----------------
Q 009185 103 TSIQVEVLVGSLNV-CSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA---------P---------------- 156 (541)
Q Consensus 103 s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a---------~---------------- 156 (541)
+++.+..+=....+ +..+...+..+++++++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44455555554444 455667788999999999999887777766666665552 1
Q ss_pred ------cHHHHHHHHHHHhhccccccc-chhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcC-CC-----Cc
Q 009185 157 ------SFLFLMAGRVVSGIGVGYSLM-IAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSG-LP-----EH 223 (541)
Q Consensus 157 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~-----~~ 223 (541)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+ .. ..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~ 215 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV 215 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 112222222222222222223 346778999999999999999999999999999888888874 11 12
Q ss_pred chhHHHHHh-hh---HHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCC
Q 009185 224 INWRLMLGL-AA---LPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNN 299 (541)
Q Consensus 224 ~gwr~~f~~-~~---~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (541)
..|...+.. .+ +.+++......++.+.. ..+++.. .....+++
T Consensus 216 ~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~~~------------------------------~~~~~~kk 262 (491)
T PF03219_consen 216 DAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPRFY------------------------------PSAKKKKK 262 (491)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccccc------------------------------hhhhcccc
Confidence 346544322 22 22222222222221100 0000000 00011111
Q ss_pred cCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchh---hHHHHHHHHHHHHHHHHHH
Q 009185 300 WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQ---LVGVTVIMGIAKTSFVLIS 376 (541)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 376 (541)
++.+...++-++ ...+.|.+..+++...++......+....-..+++..-++... .+......++..++..+++
T Consensus 263 ~k~k~s~~es~k---~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~ 339 (491)
T PF03219_consen 263 KKPKMSLKESFK---LLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLS 339 (491)
T ss_pred cCCCccHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333 2455666666666666665555555444444444443333221 2334455667777777888
Q ss_pred HHHHhhcCCchHHHHhHHHH
Q 009185 377 ALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 377 g~l~d~~g~~~~~~~~~~~~ 396 (541)
+.+.+|+|-+....+.-+++
T Consensus 340 ~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 340 SNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHhhHHHHHHHhHHHH
Confidence 99999999876655543333
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=60.61 Aligned_cols=153 Identities=18% Similarity=0.061 Sum_probs=89.3
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 009185 348 KDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIA 427 (541)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (541)
++.+ .+..+...++......+.+...+.|.+.||+|||+..+...++..++++....... + .+++
T Consensus 62 ~~yg-~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~----------~----~L~~ 126 (354)
T PF05631_consen 62 ESYG-FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNY----------P----VLLL 126 (354)
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcccc----------H----HHHH
Confidence 4444 45556666888888888999999999999999999999888888888865433111 1 2222
Q ss_pred HHHHHHHHhccccccceee-ecc----cCCchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q 009185 428 VCAAVSFFSIGLGPITWVY-SSE----IFPTKFRAQGSSLAISV-NRLVSGIVAMSFLSISRAVTF--GGMFFILSGITA 499 (541)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~-~~~----~~p~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~ 499 (541)
.=++.|.......+..-++ +.| -+|++..+...+..... +.+..+....+...+.+..+. ..+|.....+.+
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~ 206 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA 206 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 2222222221111111111 222 24555555555555533 334444455555555666554 567777777777
Q ss_pred HHHHHHHhhcccCCCC
Q 009185 500 VGTVFFYFFLPETKGK 515 (541)
Q Consensus 500 ~~~~~~~~~~~~~~~~ 515 (541)
++.+++....+|..+.
T Consensus 207 ~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 207 VAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHhcccccCCC
Confidence 7777765556665443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=50.03 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=56.0
Q ss_pred HHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHH
Q 009185 326 GVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGST 394 (541)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 394 (541)
-...++.+.+...+.-|.|.++++.+. +..+.+.+..+..+..+++.++.|.++||+++++.......
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 345566777788888999999998665 66777779999999999999999999999999887765543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.1e-06 Score=82.77 Aligned_cols=163 Identities=12% Similarity=0.006 Sum_probs=2.3
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCC-----------
Q 009185 346 VFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD----------- 414 (541)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 414 (541)
-++.....++.+.|.+.+.+-++.++..++..++.+|..|-+++-.+.++++++.+++.+......+..
T Consensus 28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 445566667788888999999999999999999999988888889999999999998877544322210
Q ss_pred --------------------------CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHH
Q 009185 415 --------------------------IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNR 468 (541)
Q Consensus 415 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 468 (541)
....+.....+++.-++.|++.....++..+|+-|.++++..+...|+..+...
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 011122344555666667777777888999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHh---------------------hc-chhHHHHHHHHHHHHHHHHHhh
Q 009185 469 LVSGIVAMSFLSISRA---------------------VT-FGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 469 ~~~~~~~~~~~~~~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
+|-++|-.+.+..++. .| |...|++.+.+.++..+....+
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8777776666554431 12 4345666666666655555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=67.77 Aligned_cols=140 Identities=16% Similarity=0.040 Sum_probs=93.8
Q ss_pred HHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHH-----HHH
Q 009185 74 LASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATF-----LLG 148 (541)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~-----~i~ 148 (541)
-+.+.++..++....+.+.+. ...++.-..++..+...+|.+|..++.--...+ |+ |++.+...+-. .+.
T Consensus 251 PL~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l 325 (402)
T PF02487_consen 251 PLFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLL 325 (402)
T ss_pred HHHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHH
Confidence 344455554443333222221 113344345778888888888877664432222 33 33333333222 222
Q ss_pred HHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 149 ALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 149 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
....-+.++.|..++.-+..|+..|..++.....+.|-.++++|..+++..+.+.++|..++.+++-.+-
T Consensus 326 ~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 326 QSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2233456889999999999999999999999999999999999999999999999999999998887663
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=53.35 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccc
Q 009185 361 VTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLG 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (541)
-..+......+..++.+.+.+++|.|+.++++.++.++-........ ...++....+.|+.....+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~--------------~~~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN--------------SYTLYPASALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhhHHhh
Confidence 44556666777788889999999999999998877775544432211 1144445555555555555
Q ss_pred ccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009185 441 PITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSIS 482 (541)
Q Consensus 441 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 482 (541)
...-.++.+...++.+++..|+.-.+.+.+..+|..+.-.+.
T Consensus 108 ~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 108 TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888888999999988888887777766655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=60.66 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=87.3
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 009185 346 VFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCV 425 (541)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (541)
+.++.++ +...+-+...++.+..++..+.+-|+.||+|-|....++....+++..+=.+.....-++ .....+..
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~----~f~~~l~~ 144 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPP----LFRRPLTH 144 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccc----cchhhhhH
Confidence 3444444 555566688889999999999999999999999999999999999887766654431111 11111222
Q ss_pred HHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009185 426 IAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV 485 (541)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 485 (541)
..-.+. +........+..-+..--+|+++|+.+..+..+.+.+|.+++..+-..+..+.
T Consensus 145 ~Gq~ia-a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 145 TGQSIA-AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HhHHHH-HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 211111 11111111121223344579999999999999999999988887777666544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0057 Score=60.12 Aligned_cols=123 Identities=8% Similarity=0.027 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCC------------c-------
Q 009185 357 QLVGVTVIMGIAKTSF-VLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDI------------K------- 416 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------- 416 (541)
...++.....+...+. .++.+++++|++|++............+.++++........-. .
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i 123 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI 123 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence 3333444333433333 7888999999999998887777777666666655332211100 0
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhccccc-cceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009185 417 ---PAWAIALCVIAVCAAVSFFSIGLGP-ITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR 483 (541)
Q Consensus 417 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (541)
..|.. .++.+..-.++....+ +.+.+++|.+..++..+-+++....+++|..+++.+...+.+
T Consensus 124 ~~~~~W~~----~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 124 AILRIWSF----ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1111122222222223 667889999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=64.79 Aligned_cols=155 Identities=21% Similarity=0.151 Sum_probs=90.6
Q ss_pred HHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcC-----CchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHH
Q 009185 346 VFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFG-----RRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWA 420 (541)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (541)
++.+..+.++.....+.....+. ....++.|.++|-+. ||..++++.++..++...++...... .....
T Consensus 15 ~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-----~s~~~ 88 (433)
T PF03092_consen 15 FLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-----SSAAI 88 (433)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-----chhhh
Confidence 34444444444443233333322 345678899999873 45555666666655555555433211 01111
Q ss_pred HHHHHHHHHHHHHHHhccccccceeeecccC---CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 009185 421 IALCVIAVCAAVSFFSIGLGPITWVYSSEIF---PTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGI 497 (541)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 497 (541)
.. +..+...++....-...-++..|.. |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+
T Consensus 89 ~~----~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 89 AV----VLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred HH----HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 11 1111111222112233344555554 444 778888888899999999999999999999999999888888
Q ss_pred HHHHHHHHHhhccc
Q 009185 498 TAVGTVFFYFFLPE 511 (541)
Q Consensus 498 ~~~~~~~~~~~~~~ 511 (541)
..+..+..+.+.+|
T Consensus 164 ~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 164 PLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHhhhh
Confidence 77776666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=65.15 Aligned_cols=191 Identities=11% Similarity=-0.003 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHH
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLA 401 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 401 (541)
..++.+..+.+......+... -.-++.....+....|++...+-++..+......+...|..|-+++-++.++++++.+
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~-IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSV-ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhh-hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 334444444444444333333 3334555555666677788888899999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCC---------------------------------------CchhHHHHHHHHHHHHHHHHHhcccccc
Q 009185 402 VLGLGSKYLDQSD---------------------------------------IKPAWAIALCVIAVCAAVSFFSIGLGPI 442 (541)
Q Consensus 402 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (541)
+..+.....++.. ....+..++.+++.-++.|.+.....++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 8887633221110 0112234556777777888888888899
Q ss_pred ceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------------c-chhHHHHHHHHHHHHHH
Q 009185 443 TWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAV------------------T-FGGMFFILSGITAVGTV 503 (541)
Q Consensus 443 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------g-~~~~~~~~~~~~~~~~~ 503 (541)
..+|+-|.+.++......|+..++.-+|=++|-.+.+.....+ | |...|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998999999999888887777776666655421 2 33456667777776666
Q ss_pred HHHhhcccCCC
Q 009185 504 FFYFFLPETKG 514 (541)
Q Consensus 504 ~~~~~~~~~~~ 514 (541)
.+ ++.|+...
T Consensus 338 p~-f~fPk~lp 347 (735)
T KOG3626|consen 338 PL-FFFPKELP 347 (735)
T ss_pred HH-HhCcccCc
Confidence 65 44554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.015 Score=56.56 Aligned_cols=185 Identities=11% Similarity=0.047 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH----HHH
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM----AVS 399 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~----~~~ 399 (541)
.+.+..++...+.=...+-.|.++.+....+..........-.+..++..+..|...||..|.+......+.. +++
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s 85 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS 85 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence 3444555555556666677788887776555555555666777888888999999999999987665554433 333
Q ss_pred HHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccccccee----eecccC--CchhhhhhhHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWV----YSSEIF--PTKFRAQGSSLAISVNRLVSGI 473 (541)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--p~~~~~~~~g~~~~~~~~~~~~ 473 (541)
+.++........... ...+.....+.+...+......+......+ ++..+. +++.....++.+.-+-.+...+
T Consensus 86 ~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 86 CALFLLLLSYPSSSS-QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHHHHhCCcccc-ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 333332222211110 011222222222222222111111111111 111122 3444566666666666778999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhc
Q 009185 474 VAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFL 509 (541)
Q Consensus 474 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 509 (541)
+|.+.|.+.+..+......+.++..+++.++=++++
T Consensus 165 aPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 165 APLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888888777776654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0095 Score=52.41 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=37.9
Q ss_pred ccchhhchHhHHHHHHHHHHHHHHHhhhcC--CCCcchhHHHHHhhhHHHHHHHHHHhcC
Q 009185 190 MTRGFLSSLPEVFINFGILLGYISNYALSG--LPEHINWRLMLGLAALPAIAVAFGVIAM 247 (541)
Q Consensus 190 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~--~~~~~gwr~~f~~~~~~~~~~~~~~~~~ 247 (541)
|+|+..+.+...+.++|.++.-+.--.-.+ ..-...|++.+.+.+++.++.++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888899998877433211100 0012359999998888777766665544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.033 Score=56.09 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=82.6
Q ss_pred HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH---HHHH----HhcccH-HHHHHHHHH
Q 009185 96 IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLG---ALLM----GLAPSF-LFLMAGRVV 167 (541)
Q Consensus 96 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~---~~~~----~~a~~~-~~l~~~r~l 167 (541)
+.--+|-+....+.+.+++++|.++|+.+++++.++--++. ..+-+.+..++ ..+. ++...+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888889999999999999999999998874433332 22221111111 1111 111111 222334566
Q ss_pred HhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHH
Q 009185 168 SGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALP 236 (541)
Q Consensus 168 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~ 236 (541)
.|+..|+..|....+..+.. .++-+...|-......+|.++|.++.+++.- ...|-....++.+.+
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl--p~lG~~~t~~~~a~l 185 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLL--PRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence 77888888887777665532 2234677788888999999999988877761 345543333333333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=51.66 Aligned_cols=149 Identities=15% Similarity=0.107 Sum_probs=88.7
Q ss_pred hhhHhhccHHHHhhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCC
Q 009185 336 NDAVVYYSPEVFKDAGINSK-KQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD 414 (541)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
........+.+..+...... ...+.......+...++.+..|.+.||+|||+.+..+.....++.++..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 91 (338)
T COG0477 18 LGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------ 91 (338)
T ss_pred cchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------
Confidence 33444455555555544332 34555777788888888899999999999997777666553444333333221
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc-hhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHh--hcchhH
Q 009185 415 IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT-KFRAQGSSLAIS-VNRLVSGIVAMSFLSISRA--VTFGGM 490 (541)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~ 490 (541)
...+ .........+.......+...++..|..|. +.|+...+.... ...++..+++.+.+.+... .+|+..
T Consensus 92 -~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 92 -VGLA----LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred -chHH----HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 0011 111222223344434556777888888887 568888888888 5667777777666655544 345554
Q ss_pred HHHHH
Q 009185 491 FFILS 495 (541)
Q Consensus 491 ~~~~~ 495 (541)
+....
T Consensus 167 ~~~~~ 171 (338)
T COG0477 167 FLLAA 171 (338)
T ss_pred HHHHH
Confidence 43333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.07 Score=53.80 Aligned_cols=154 Identities=10% Similarity=-0.019 Sum_probs=76.8
Q ss_pred hccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH---HHHHHHHHHHhhhcCCCCCch
Q 009185 341 YYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM---AVSLAVLGLGSKYLDQSDIKP 417 (541)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 417 (541)
.....++....+++....+.+.+++-.+..+|+.+++++.++..++... +-..+. .++..++...... .
T Consensus 35 v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~-------~ 106 (521)
T PRK03612 35 LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAF-------Q 106 (521)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3334444555555666666667777777777777777665332222111 111111 1111111111110 0
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcchhHHHHHHH
Q 009185 418 AWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR-AVTFGGMFFILSG 496 (541)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 496 (541)
...........+..++..++..|+..-+..+. ..+..+...|-.+....+|+++|+.+.+.++- ..|.....++.+.
T Consensus 107 -~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~ 184 (521)
T PRK03612 107 -GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS 184 (521)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 01111122222333344444445544333322 12224677888999999999999999988764 6776555556555
Q ss_pred HHHHHHHH
Q 009185 497 ITAVGTVF 504 (541)
Q Consensus 497 ~~~~~~~~ 504 (541)
+.++.+++
T Consensus 185 l~~~~a~~ 192 (521)
T PRK03612 185 LNLLAALV 192 (521)
T ss_pred HHHHHHHH
Confidence 55444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=49.55 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhc-CCCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDA-GINSKKQLVGVTVI-MGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
++.+.++...++.. +-....++..|+.+. .+.+..+..--..+ ..=..+...+....+.|.++.|++++++.+..
T Consensus 5 ~~~~llc~~gf~~~---frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~ 81 (412)
T PF01770_consen 5 KITLLLCLFGFFKE---FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSY 81 (412)
T ss_pred HHHHHHHHHHHHHh---cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444444444333 233445666677664 44444443322222 23344455566778899999999999998888
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHH
Q 009185 397 AVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAM 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 476 (541)
.+...++.+..... .+-+.-++.|..... -...++++=..+|+++--++.+......-+|..++..
T Consensus 82 i~t~~lll~~~sv~-------------~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 82 IITWLLLLFGTSVL-------------AMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHHCcHH-------------HHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776654321 111222222222211 1223344445567787888898888888888888887
Q ss_pred HHHHHHHhhc--chhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 477 SFLSISRAVT--FGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 477 ~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
++..+....+ +.....+..+...++.++. +++|..+
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP~~~ 185 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLPMPK 185 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 7777666433 3333334333333444443 4555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0029 Score=60.08 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=95.0
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh----cCCchHHH-HhHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDH----FGRRPLLM-LGSTGMAVS 399 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~-~~~~~~~~~ 399 (541)
.....+..-+++..-..|.|.|+++.+........ ......+.+++.+++.|..+|| +||||..+ .+....+++
T Consensus 37 v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~-iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~ 115 (498)
T KOG0637|consen 37 VASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI-IWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS 115 (498)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc-cccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence 33333444455566677889999988876555544 6667778888999999999997 67766654 556666777
Q ss_pred HHHHHHHhhhc----CCCCC-chhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhh-hhHHHHHHHHHHHHH
Q 009185 400 LAVLGLGSKYL----DQSDI-KPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQ-GSSLAISVNRLVSGI 473 (541)
Q Consensus 400 ~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~~~~~ 473 (541)
++++++..... +.... .-.+...+.++.+.+.-...+....|. -++..|+...+.+.+ +++....+..+|+.+
T Consensus 116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMAVGNVL 194 (498)
T ss_pred HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHHhccee
Confidence 77776654431 11111 112333333333333333333333444 477788877666666 888888888888777
Q ss_pred HHHHHH
Q 009185 474 VAMSFL 479 (541)
Q Consensus 474 ~~~~~~ 479 (541)
|=...+
T Consensus 195 GY~~g~ 200 (498)
T KOG0637|consen 195 GYALGS 200 (498)
T ss_pred eeeccc
Confidence 654443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.09 Score=51.29 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhhhhhc---cchhHHHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHhhcc
Q 009185 114 LNVCSLIGSLAAGKTSD---CIGRRYTIVLAAATFLLGALLMGLA------------------PSFLFLMAGRVVSGIGV 172 (541)
Q Consensus 114 ~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~a------------------~~~~~l~~~r~l~G~~~ 172 (541)
..+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++.|++.
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 34455555566666664 5789999999999988888876653 24667778889999999
Q ss_pred cccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhh
Q 009185 173 GYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYA 216 (541)
Q Consensus 173 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 216 (541)
+......+.++.+.+ +++|..+.++...-..++..++......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999 6789999999888888888776555443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0008 Score=63.00 Aligned_cols=118 Identities=8% Similarity=-0.067 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhcccc
Q 009185 361 VTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLG 440 (541)
Q Consensus 361 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (541)
.+..++++..+|+.+.++..-+..+++.+.+..+.=.+..-++.+................-...++..+..++.++-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 56678999999999888743221133333333222222222222221110000000001111123334444555555556
Q ss_pred ccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 441 PITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 441 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
++.+.+..+..++++|..+..+....-.+|-.+|..+.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888877777777776666665443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.19 Score=49.99 Aligned_cols=116 Identities=11% Similarity=-0.009 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhc----CCCC--------Cchh--H-----HHHHHHHHH
Q 009185 368 AKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYL----DQSD--------IKPA--W-----AIALCVIAV 428 (541)
Q Consensus 368 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~--~-----~~~~~~~~~ 428 (541)
+.++...+..++++++++.++..+........+.++++..... +++. .... + ..|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3455567788999999999887766666666666655543211 1110 0000 0 011111111
Q ss_pred HHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009185 429 CAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR 483 (541)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (541)
...-...+....-+.+.+++|....++..+-+++....+++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222223457888999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.01 Score=54.74 Aligned_cols=162 Identities=15% Similarity=0.011 Sum_probs=83.7
Q ss_pred HHHhhhhhhcccchhhhhHHHHhhhcCCCh-hHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 009185 75 ASTNSILLGYDIGVMSGAILYIRDNLNITS-IQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153 (541)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~ 153 (541)
+.+++++.....-+..........+++-+. ...+.-.-.-.....+..++.|...|+..|+|++...+++.-++.++++
T Consensus 32 Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vag 111 (503)
T KOG2601|consen 32 LYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAG 111 (503)
T ss_pred hhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHH
Confidence 445555555544445555555555555332 2222222222334566777788899999999999888777544444333
Q ss_pred ------hc------ccHHHHHHHHHH----HhhcccccccchhhhhhhcC----ccccchhhc---hHhHHHHHHHHHHH
Q 009185 154 ------LA------PSFLFLMAGRVV----SGIGVGYSLMIAPVYTTEIS----PAMTRGFLS---SLPEVFINFGILLG 210 (541)
Q Consensus 154 ------~a------~~~~~l~~~r~l----~G~~~g~~~~~~~~~i~~~~----~~~~r~~~~---~~~~~~~~~G~~~g 210 (541)
+. .+++.+..+-++ ..++.=........+-.||. ..+.+.... +..-..-..-.++.
T Consensus 112 glvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~La 191 (503)
T KOG2601|consen 112 GLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLA 191 (503)
T ss_pred HHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchh
Confidence 21 244444443333 22222111111112223333 233333333 44444555567888
Q ss_pred HHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 211 YISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 211 ~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
|.+.+.+. ...+-|..-.+.+....+
T Consensus 192 pv~tg~Ii---tfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 192 PVITGLII---TFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhcccc---eeechhhhhhhhHHHHHH
Confidence 99988888 666777655554444444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.096 Score=37.53 Aligned_cols=73 Identities=22% Similarity=0.108 Sum_probs=58.8
Q ss_pred hhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhh
Q 009185 335 GNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSK 408 (541)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 408 (541)
+-+.+...+|.+.++.+. +..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+++...
T Consensus 7 gRFayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677877776655 6677777999999999999999999999988888888988888888888877554
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.036 Score=53.70 Aligned_cols=117 Identities=12% Similarity=-0.061 Sum_probs=80.6
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch---hhhhhhHHH
Q 009185 387 PLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK---FRAQGSSLA 463 (541)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~ 463 (541)
++++++.++..++.+++.+........+. . ....+.+...+.+.+.++.=|...++..|.++++ .|......+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~---~-~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSG---I-QLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhh---H-HHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHH
Confidence 56778888889998887766554322111 1 1113334444455666666688888888888764 566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHh
Q 009185 464 ISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYF 507 (541)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 507 (541)
+...++|..++..+.+++.++.||...|.+.++..+++.+..+.
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888877777665433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.7 Score=40.08 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcC
Q 009185 115 NVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEIS 187 (541)
Q Consensus 115 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 187 (541)
.+..+..+++.+.+.+++|-|..+.++...+...- ..=+=+.+..++-.-...|+|.+..+..--+|+++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 44455666666789999999999999888775432 2223467889999999999999999988878876655
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.68 Score=47.20 Aligned_cols=182 Identities=14% Similarity=0.050 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHhHHHHHHHHHH
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF-GRRPLLMLGSTGMAVSLAV 402 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~ 402 (541)
..+..-.+-..+++++...+-.|+....+.....+.-.............+++++++|.+ ||-+++.++.++..++..+
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~ 120 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFG 120 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444544444455555544443334444455666666677778999999975 7888888888888888777
Q ss_pred HHHHhhhcCC---------CC---CchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCc----hhhh--hhhHHHH
Q 009185 403 LGLGSKYLDQ---------SD---IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPT----KFRA--QGSSLAI 464 (541)
Q Consensus 403 ~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~--~~~g~~~ 464 (541)
+......... .. ..+.......+.........+.++.-|...++-+|-++. +.+. .-+....
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 7665443210 10 111122222333344444445666667777888888772 2223 4566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009185 465 SVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFF 505 (541)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 505 (541)
...++|..++..+..++-++.+|...|.+..+...++.++.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 77778888888888877788899888888777766665554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.74 Score=43.96 Aligned_cols=60 Identities=8% Similarity=-0.160 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009185 322 IAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF 383 (541)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 383 (541)
++.+++...........+.+-.++|.....+.+. .-.+...+.+.+.+...+.-.+.-+.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666777777777666655544 33345555555555555555544443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.16 Score=50.02 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhH--HHHHH--HHHHHHHHHHHHHh---------cccHHHHHHHHHHHhhccc
Q 009185 107 VEVLVGSLNVCSLIGSLAAGKTSDCIGRR--YTIVL--AAATFLLGALLMGL---------APSFLFLMAGRVVSGIGVG 173 (541)
Q Consensus 107 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~--~~~~~~i~~~~~~~---------a~~~~~l~~~r~l~G~~~g 173 (541)
.-.....|.++-.+|..+..+.. .-++| ++++. .=+++.-..++|.. -++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566677777777777554331 11222 33222 22223333334432 2466777888999999999
Q ss_pred ccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhh
Q 009185 174 YSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 174 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
-....+..+..+..++++|..+..+...+..+|..+|..++..+
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776544
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=6.4 Score=38.68 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcC----CCC--------Cch-h--HHH-----HHHHHH
Q 009185 368 AKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLD----QSD--------IKP-A--WAI-----ALCVIA 427 (541)
Q Consensus 368 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~-~--~~~-----~~~~~~ 427 (541)
++++..++..++.+++.+.++..+........++++++...... ++. ..+ . |.. |.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 56677788889999999988887777777766666666543211 110 000 1 100 111111
Q ss_pred HHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009185 428 VCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR 483 (541)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (541)
....-...+....-+.+..+.|....++..+-+++.+...+++..+++.+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111112222222446777899998989999999999999999988888887765
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.71 Score=45.13 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhhhhHhhccHHHHhh--cCCCCchhhH---HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 009185 324 AIGVNFFMQASGNDAVVYYSPEVFKD--AGINSKKQLV---GVTVIMGIAKTSFVLISALYLDHFGRRPLLMLG 392 (541)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 392 (541)
++.+.++.+....+...--.|.++++ .+. +-.+.+ +..-++++=-+-+.++=...++|+||||..++.
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~-sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV-SYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCC-ChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 34555666666665555677888887 222 212222 112233333333344445566789998876654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.19 Score=45.39 Aligned_cols=130 Identities=16% Similarity=0.072 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchh
Q 009185 115 NVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGF 194 (541)
Q Consensus 115 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 194 (541)
.+-..+..+.+....||+---.=..+..++.+.+.++.+++++.++=+.+-.+..++.|.....-.++ +..+++ .
T Consensus 72 ilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~Y~~----~ 146 (409)
T KOG3880|consen 72 ILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSRYPS----I 146 (409)
T ss_pred hhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hccCCC----c
Confidence 34444555555667787643333445566778888899999999999999888888887665554444 333333 2
Q ss_pred hchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHHh-cCCCC
Q 009185 195 LSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVI-AMPES 250 (541)
Q Consensus 195 ~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~~-~~~e~ 250 (541)
..+.++.+.+...++|..--..+... -..+-|...++...+-++.+..++ .++++
T Consensus 147 ~i~~WSSGTGgAGliGa~SYa~lT~~-~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 147 VIAGWSSGTGGAGLIGASSYAFLTSW-ANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred eeccccCCCCcchhhhhhHHHHHhhh-cCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 34444455555556665444444421 234677777775544444444444 44443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.5 Score=38.78 Aligned_cols=164 Identities=13% Similarity=0.010 Sum_probs=81.0
Q ss_pred hHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHH----HHhhhcCCC
Q 009185 338 AVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLG----LGSKYLDQS 413 (541)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 413 (541)
...+-...|+...++++.........+-+...++...+.|...|+..|+|++.....+--++.++.+ ......+..
T Consensus 45 ~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~ 124 (503)
T KOG2601|consen 45 MWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLK 124 (503)
T ss_pred HHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchh
Confidence 3344445566666776655555445555666667777788888999987765544333222221111 111110000
Q ss_pred CCchhHHHHHHHHHHHHH-HHHHhcccccc----ceee-ecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009185 414 DIKPAWAIALCVIAVCAA-VSFFSIGLGPI----TWVY-SSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTF 487 (541)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~-~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 487 (541)
..+.++.....+...+.. .+-...-...+ -+.. ++|--++.......+.....-+....+.|.+.|.+....+.
T Consensus 125 ~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl 204 (503)
T KOG2601|consen 125 SATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSL 204 (503)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeech
Confidence 111223222222211111 11111111111 1122 22333444444455666667777788999999999887777
Q ss_pred hhHHHHHHHHHHHH
Q 009185 488 GGMFFILSGITAVG 501 (541)
Q Consensus 488 ~~~~~~~~~~~~~~ 501 (541)
+.....+++..++.
T Consensus 205 ~~~~g~f~~w~~vs 218 (503)
T KOG2601|consen 205 RASAGTFAAWALVS 218 (503)
T ss_pred hhhhhhhHHHHHHH
Confidence 66555555555553
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.67 E-value=7.6 Score=36.89 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-----hcCCchHHHH
Q 009185 320 ILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLD-----HFGRRPLLML 391 (541)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~ 391 (541)
+.+..+...+..+........ .+|.+++..+. +-...+.....+. -.-.-++...++| |+||||..++
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~v-Syt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGV-SYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCc-chhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceee
Confidence 445555666666777766655 88988885443 3233221221111 1112345556666 9999876543
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=88.51 E-value=16 Score=31.87 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhhh---hccchhHHHHHHHHHH
Q 009185 111 VGSLNVCSLIGSLAAGKT---SDCIGRRYTIVLAAAT 144 (541)
Q Consensus 111 ~s~~~~~~~~~~~~~g~l---~dr~Grr~~~~~~~~~ 144 (541)
.....+++.+|..+.+.+ .++..+|+.....+.+
T Consensus 52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~ 88 (209)
T PF06912_consen 52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLL 88 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 344445556666666666 2333344444444333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.14 Score=48.10 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcc-chhHHHHHH--HHHHHHHHHHHH----------HhcccHHHHHHHHHHHhhcccccc
Q 009185 110 LVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVL--AAATFLLGALLM----------GLAPSFLFLMAGRVVSGIGVGYSL 176 (541)
Q Consensus 110 ~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~--~~~~~~i~~~~~----------~~a~~~~~l~~~r~l~G~~~g~~~ 176 (541)
....|.++-.+|..+.++.--+ -.+|++... .=+++.-..++| .+-+|-+.+++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4566788888888877654211 024443332 112222222222 123456777888999999999999
Q ss_pred cchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhh
Q 009185 177 MIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 177 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
..+..+..+..++++|..+-.+...+..+|..+|..++..+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~ 307 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL 307 (309)
T ss_dssp HHHH-------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888888888888887765443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.038 Score=48.30 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=34.2
Q ss_pred hhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhh---------hccchhHHH
Q 009185 91 GAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKT---------SDCIGRRYT 137 (541)
Q Consensus 91 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l---------~dr~Grr~~ 137 (541)
..+-...++.|.++.....++-+-.+.-++..++.|.. .||+|||+.
T Consensus 38 TYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 38 TYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 33344556778888777788877788888888888754 468998874
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.00 E-value=23 Score=33.28 Aligned_cols=124 Identities=21% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHHhhhc-CCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH-----HHHHHhc----ccHHHHH
Q 009185 93 ILYIRDNL-NITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLG-----ALLMGLA----PSFLFLM 162 (541)
Q Consensus 93 ~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~-----~~~~~~a----~~~~~l~ 162 (541)
+..++..+ |-+.-|.+.+.+.|.....+|+...-++.|---.-+.+..-.++..++ .+-..|+ ++-+.++
T Consensus 30 l~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly 109 (508)
T COG4262 30 LGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY 109 (508)
T ss_pred HHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence 33444544 445568899999999999999999888887544433333322222222 1111233 4567888
Q ss_pred HHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhc
Q 009185 163 AGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS 218 (541)
Q Consensus 163 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 218 (541)
+.-++.|.-.|...|..+.++..... +-.-..+.....-.+|.+.+.++-.++.
T Consensus 110 ~lt~vIG~LVG~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~ll 163 (508)
T COG4262 110 ALTAVIGVLVGAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFLL 163 (508)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHHH
Confidence 88999999999999999998877221 1111222222235666666665555543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=84.65 E-value=9.9 Score=34.03 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHH----HHHHHHHHHHHHHHh-c----ccHHHHHHHHHHHhhccccccc
Q 009185 108 EVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIV----LAAATFLLGALLMGL-A----PSFLFLMAGRVVSGIGVGYSLM 177 (541)
Q Consensus 108 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-a----~~~~~l~~~r~l~G~~~g~~~~ 177 (541)
....-++..|..+|....|..... +-||+.+. .+++++.+..++... . .++..+++.-|+.|+..=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344455566667777777877653 44555444 345555555555312 1 1467788888999988766666
Q ss_pred chhhhhhhcCccccchhhchHhHHHHHHHHHHH
Q 009185 178 IAPVYTTEISPAMTRGFLSSLPEVFINFGILLG 210 (541)
Q Consensus 178 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 210 (541)
+...+--|. +...+.+.--.++..+++|.++-
T Consensus 224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence 665555553 22233333334455667766544
|
|
| >PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] | Back alignment and domain information |
|---|
Probab=82.38 E-value=14 Score=34.69 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHhhcccccc
Q 009185 157 SFLFLMAGRVVSGIGVGYSL 176 (541)
Q Consensus 157 ~~~~l~~~r~l~G~~~g~~~ 176 (541)
+...-.+--.+++++.|...
T Consensus 259 ~~~~~~~~~~~~a~aaG~~l 278 (317)
T PF02535_consen 259 SSSSDIVSGILLAFAAGTFL 278 (317)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 33444455566677666443
|
; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.04 E-value=5.5 Score=36.53 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=82.2
Q ss_pred hhcCCCh-hHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhccccc
Q 009185 98 DNLNITS-IQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYS 175 (541)
Q Consensus 98 ~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~ 175 (541)
+.+..+. .|.-|....|.+|..+..--.-..--++ =--.++..-.+++.+...+..+.+++|...+.-+.-|+-.|..
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchH
Confidence 4444444 4678888888887544322111111110 0011222333444555666778899999999999999988988
Q ss_pred ccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhh
Q 009185 176 LMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYAL 217 (541)
Q Consensus 176 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 217 (541)
++...--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 888888888888899999999999999999999888776554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 541 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 7e-39 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 4e-08
Identities = 60/427 (14%), Positives = 134/427 (31%), Gaps = 61/427 (14%)
Query: 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRR----YTIVLAAATFLLGA 149
+++ D +I+ ++ ++++ SL+ G SD +G R + I F
Sbjct: 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91
Query: 150 LLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILL 209
+ + ++ G +V GI +G+ ++R + FG +
Sbjct: 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM-FGCVG 150
Query: 210 GYISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIK 269
+ + + N + + I A ++P
Sbjct: 151 WALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS----------------- 193
Query: 270 TSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNF 329
A+ + + + + L R L + + IGV+
Sbjct: 194 ----------------SATVANAVGANHSAFSLKLALE--LFR-QPKLWFLSLYVIGVSC 234
Query: 330 FMQASGNDAVVYYSPEVFKDAGINSKKQLVG-VTVIMGIAKTSFVLISALYLDHFGRRPL 388
+++ F ++ G VT + + S + + L ++ G +
Sbjct: 235 TYDVFDQQFANFFT-SFFATGEQG--TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291
Query: 389 LMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSS 448
L+L T M+V + + A + + V F +G + Y +
Sbjct: 292 LLLAGTIMSVRIIGSSFAT---------SALEVVILKTLHMFEVPFLLVG----CFKYIT 338
Query: 449 EIFPTKFRAQGSSLAISVNRLVSGIVAMSFLS--ISRAVTFGGMFFILSGITAVGTVFFY 506
F +F A + + ++ I MS L+ + ++ F G + +L + T+
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
Query: 507 FFLPETK 513
F L
Sbjct: 398 FTLSGPG 404
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 64/410 (15%), Positives = 117/410 (28%), Gaps = 70/410 (17%)
Query: 120 IGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP----SFLFLMAGRVVSGIGVGYS 175
G SD R + L MG P S + + G G
Sbjct: 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG-- 134
Query: 176 LMIAPVYTTEIS---PAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232
M P + RG + S+ N G + + L G+ +W L +
Sbjct: 135 -MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL--FLLGMAWFNDWHAALYM 191
Query: 233 AALPAIAVAFGVIAM----PESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTI 288
A AI VA AM P+S +EE +
Sbjct: 192 PAFCAILVALFAFAMMRDTPQSCGL------------------PPIEEYKND------YP 227
Query: 289 ADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFK 348
D A Q + +L + + AI N F+ ++ +SP K
Sbjct: 228 DDYNEKAEQELTAKQIFMQYVLPN-----KLLWYIAIA-NVFVYLL-RYGILDWSPTYLK 280
Query: 349 DAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHF---GRRPLLMLGSTGMAVSLAVLGL 405
+ + + + A L+ D R + T + ++ V +
Sbjct: 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340
Query: 406 GSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAI- 464
PA + +I + F G + +++ E+ P K A G++
Sbjct: 341 N----------PAGNPTVDMICMIVI-GFLIYGPVMLIGLHALELAPKK--AAGTAAGFT 387
Query: 465 ----SVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510
+ V+ + + + G F ++ G + + + +
Sbjct: 388 GLFGYLGGSVAASAIVGY--TVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 120 IGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIA 179
+ L G SD +GRR I++ + F+L L+ S L+A + G+G G ++A
Sbjct: 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMA 109
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.56 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.43 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.4 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.4 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.29 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=383.39 Aligned_cols=443 Identities=28% Similarity=0.504 Sum_probs=345.3
Q ss_pred ccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCC--------ChhHHHHHHHHHHHHHHHHHhhhhhhhccchhH
Q 009185 64 FNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNI--------TSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRR 135 (541)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 135 (541)
.+++.+.+.++++++.++.+||.+.++..+|.+.++++. +..+.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345667777788889999999999999999999888743 345678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhch
Q 009185 136 YTIVLAAATFLLGALLMG------------------LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSS 197 (541)
Q Consensus 136 ~~~~~~~~~~~i~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 197 (541)
++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999999 47899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhcCCC-----CcchhHHHHHhhhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcC
Q 009185 198 LPEVFINFGILLGYISNYALSGLP-----EHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSD 272 (541)
Q Consensus 198 ~~~~~~~~G~~~g~~~~~~l~~~~-----~~~gwr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 272 (541)
+.+.+..+|.++++.++..+.... ...+||+.+.+..++.++..+..+++||||+|+..+++.+++.+.+++..+
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 999999999999998888775321 245799999999999999988999999999999999999999988877654
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCC
Q 009185 273 SVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGI 352 (541)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (541)
++...+...+..... .. ..+ ...+.... .+++.........+....+.+.+..|.|.+.+..+.
T Consensus 246 ~~~~~~~~~~~~~~~-~~---~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 246 NTLATQAVQEIKHSL-DH---GRK-------TGGRLLMF-----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHH-HH---HHH-------HTTHHHHS-----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred CchhHHHHHHHHHHH-Hh---hhh-------hhhHHHHh-----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 332222111111000 00 000 00011111 122344455556666777778888888888887766
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHH
Q 009185 353 NSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAV 432 (541)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (541)
.... ........++..+++.++++++.||+|||+.++.+...+.++++.++....... ..+ ..+...++..
T Consensus 310 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~---~~~~~~~~~~ 380 (491)
T 4gc0_A 310 STDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----PGI---VALLSMLFYV 380 (491)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-----CHH---HHHHHHHHHH
T ss_pred Cccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-----chH---HHHHHHHHHH
Confidence 5443 444677788899999999999999999999999998888888777766544321 111 2333444455
Q ss_pred HHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhcchhHHHHHHHHHHHHHHHHH
Q 009185 433 SFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISR------AVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
..+..+..|+.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+.+ ..+....+++++++++++.++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 566677778888999999999999999999999999999999988876543 33455678899999999999999
Q ss_pred hhcccCCCCCHHHHHHHhcccCCCC
Q 009185 507 FFLPETKGKSLEDIGLLFEDKAHDN 531 (541)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (541)
+++||||+|+++|+|+.+|++.+++
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC------
T ss_pred heecCCCCCCHHHHHHHhCCCCccc
Confidence 9999999999999998876655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=338.57 Aligned_cols=401 Identities=12% Similarity=0.060 Sum_probs=308.5
Q ss_pred cchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Q 009185 65 NKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAAT 144 (541)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 144 (541)
++..+..+..++++.+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 334455556777777888889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC
Q 009185 145 FLLGALLMGL----APSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL 220 (541)
Q Consensus 145 ~~i~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 220 (541)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcch-hHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccC
Q 009185 221 PEHIN-WRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSN 298 (541)
Q Consensus 221 ~~~~g-wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (541)
+..| ||+.|++.+++.++..+ ..+++||+|+....+++.+. .+..+. +. +.+
T Consensus 180 -~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~--------------~~~-- 233 (451)
T 1pw4_A 180 -AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------KNDYPD-DY--------------NEK-- 233 (451)
T ss_dssp -HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------CCC-------------------------
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------cccccc-cc--------------hhh--
Confidence 6778 99999998877766544 55668888753211111000 000000 00 000
Q ss_pred CcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 009185 299 NWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISAL 378 (541)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 378 (541)
..++...++... ...++++.++...+..++.......+..+.|.|+++..+.+....+.......++.+++.++.|+
T Consensus 234 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 234 -AEQELTAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp ------CCTHHHH--HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhcccccccchH--HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111100 12344567777777788888888889999999999876677777887889999999999999999
Q ss_pred HHhhc--CCchHHHHhHHHHH-HHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh
Q 009185 379 YLDHF--GRRPLLMLGSTGMA-VSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF 455 (541)
Q Consensus 379 l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 455 (541)
+.||+ ++|+.+.++..+.. ++++++.+... ...+ ......+..+++..+..+....+..|.+|++.
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (451)
T 1pw4_A 311 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA-------GNPT----VDMICMIVIGFLIYGPVMLIGLHALELAPKKA 379 (451)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT-------TCHH----HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc-------cCHH----HHHHHHHHHHHHHhchHHHHHHHHHHHhchhh
Confidence 99999 99888877766555 44443322110 0112 22223333344444444566688899999999
Q ss_pred hhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 456 RAQGSSLAISVNRL-VSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 456 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
|+++.|+.+...++ ++.++|.+.|.+.+..|+...+++.+++.+++.++.++.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999889988888887777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=320.10 Aligned_cols=368 Identities=13% Similarity=0.062 Sum_probs=288.2
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
.++++..+..+++....++..|.+.+++|++..+.+++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44555667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhc-CCCCc-----
Q 009185 153 ---GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALS-GLPEH----- 223 (541)
Q Consensus 153 ---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~~----- 223 (541)
++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. .....
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 889999999999999999999999999999999999999999999999999999999999999886 32111
Q ss_pred -----------------chhHHHHHhhhHHHHHHHHHHhc--CCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHH
Q 009185 224 -----------------INWRLMLGLAALPAIAVAFGVIA--MPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEM 284 (541)
Q Consensus 224 -----------------~gwr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (541)
.+||+.|++.+++.++..+..++ .||+++.. ++.+ +.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~-----------~~---------- 244 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDA-----------KQ---------- 244 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCS-----------ST----------
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cccc-----------cc----------
Confidence 01999998866665555443333 45554310 0000 00
Q ss_pred HHHHHhhhhhhccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHH-HhhcCCCCchhhHHHHH
Q 009185 285 TRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEV-FKDAGINSKKQLVGVTV 363 (541)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 363 (541)
...+..+++ .++++.++...+..++..........+.|.| +++..+.+....+....
T Consensus 245 ---------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 302 (438)
T 3o7q_A 245 ---------------GSFSASLSR-------LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLT 302 (438)
T ss_dssp ---------------TSHHHHHHH-------HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred ---------------cchhhhHHH-------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHH
Confidence 000011222 2334556666666677777778888999999 88886777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccc
Q 009185 364 IMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPIT 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (541)
...++.+++.++.|++.||++||+.+..+.++.+++++++.+.... + .....+..+++.....|..
T Consensus 303 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 303 GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH---------V-----GLIALTLCSAFMSIQYPTI 368 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH---------H-----HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc---------H-----HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888887777666553221 1 1222234444555556777
Q ss_pred eeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHH
Q 009185 444 WVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVT-FGGMFFILSGITAVGT 502 (541)
Q Consensus 444 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 502 (541)
+++..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..| +...+.+.+++.++..
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88888998977 888888877 677999999999999999999 8888877655544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=285.32 Aligned_cols=409 Identities=13% Similarity=0.055 Sum_probs=266.4
Q ss_pred hhhHHHHhhh-----cCCChhHHHHHHHHHHHHHHHHHhhhhhhhcc-chhHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 009185 90 SGAILYIRDN-----LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDC-IGRRYTIVLAAATFLLGALLMGLAPSFLFLMA 163 (541)
Q Consensus 90 ~~~~~~i~~~-----~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~ 163 (541)
....+++.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334455555 99999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHhhcccccccchhhhhhhcCcccc--chhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHH
Q 009185 164 GRVVSGIGVGYSLMIAPVYTTEISPAMT--RGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVA 241 (541)
Q Consensus 164 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~ 241 (541)
+|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|.+++|.+++.+. +..|||+.|++.++..++..
T Consensus 114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 777888899999999999999999998 77899999999776666554
Q ss_pred HHHhcC-CCCh----HHHHhcCChHHHHHHHHH-----------------hcCChhhHHHHHHHHHHHHHhhhhhhccCC
Q 009185 242 FGVIAM-PESP----RWLVMKGRFADAKQALIK-----------------TSDSVEEAEFRLNEMTRTIADLGHAASSNN 299 (541)
Q Consensus 242 ~~~~~~-~e~p----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (541)
+..++. |+.. +....+.+.++.++..+. ......+.................... .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 268 (491)
T 4aps_A 191 LVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAW--M 268 (491)
T ss_dssp HHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHH--H
Confidence 443322 2110 000001111222221111 000000000000000000000000000 0
Q ss_pred cCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009185 300 WQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALY 379 (541)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 379 (541)
++.+.. .. . ...+....+...+..+.....+.....+.|.+.++..+.+....+.......++.+++.++.+++
T Consensus 269 ~~~~~~-~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (491)
T 4aps_A 269 ISSVKV-TS--T---EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWL 342 (491)
T ss_dssp C------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHH
T ss_pred hhcccc-cH--H---HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHH
Confidence 000000 00 0 00011112233333344445555666777888887666554555557778888899999999999
Q ss_pred HhhcCCchHHH-----HhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCch
Q 009185 380 LDHFGRRPLLM-----LGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTK 454 (541)
Q Consensus 380 ~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 454 (541)
.||++||+... .+..+.+++++++...............+ ......+..++......+....++.|.+|++
T Consensus 343 ~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 418 (491)
T 4aps_A 343 WTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL----WLVGSWALVILGEMLISPVGLSVTTKLAPKA 418 (491)
T ss_dssp HHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH----HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH----HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 99999986544 66666666666665543221111111112 2223334444455555677788999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 455 FRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 455 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
.|+++.|+.+...++|..+++.+.+.+.+ .++...+.+.+++++++.++.+++.++.++
T Consensus 419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 419 FNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654 466778888888887777776665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.67 Aligned_cols=357 Identities=16% Similarity=0.078 Sum_probs=277.9
Q ss_pred HHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 009185 73 ILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLM 152 (541)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 152 (541)
.++++..++..++.....+.+|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34455667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 153 GLAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 153 ~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+. +..|||+.|++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~ 159 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 77899999998
Q ss_pred hhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhc
Q 009185 233 AALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLL 311 (541)
Q Consensus 233 ~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (541)
.++..++..+ ..+++||+++.. +++ .+.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------------------------~~~~~~~----- 192 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---APR---------------------------------------TRLLTSY----- 192 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---CCC---------------------------------------CCTTTCS-----
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---ccc---------------------------------------ccHHHHH-----
Confidence 8777776655 455678875410 000 0000011
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 009185 312 RPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391 (541)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 391 (541)
++.+++|.++...+..++..........+.|.++++..+.+....+.......++.+++.++.+++.||++++ ...
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~ 268 (375)
T 2gfp_A 193 --KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ 268 (375)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred --HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 2345677777777777778888888888899988875555666777788888999999999999999998872 222
Q ss_pred hHHH-HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHH
Q 009185 392 GSTG-MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLV 470 (541)
Q Consensus 392 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 470 (541)
+..+ ...+..++...... ... ........+..++......+...++..|..| +.|+++.|+.+...++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 269 SVICCLLAGLLMWIPDWFG--------VMN-VWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIG 338 (375)
T ss_dssp HHHHHHHTSSSSSHHHHHH--------HHH-HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc--------ccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHH
Confidence 2222 22222211111100 000 1122223333344444556777888899988 78999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHH
Q 009185 471 SGIVAMSFLSISRAVTFGGMFFI 493 (541)
Q Consensus 471 ~~~~~~~~~~~~~~~g~~~~~~~ 493 (541)
..++|.+.+.+.+..++...+.+
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999887776555544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=260.98 Aligned_cols=372 Identities=16% Similarity=0.145 Sum_probs=239.1
Q ss_pred cchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHH---HHHhcccHH-H
Q 009185 86 IGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGAL---LMGLAPSFL-F 160 (541)
Q Consensus 86 ~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~---~~~~a~~~~-~ 160 (541)
.....+.+|. +++++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+++++.. ..++++... .
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566664 6677999999999999999999999999999999999999999999888765322 222332221 2
Q ss_pred HHHHHHHHhhcccccccchhhhhhhcCcc--ccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHH
Q 009185 161 LMAGRVVSGIGVGYSLMIAPVYTTEISPA--MTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAI 238 (541)
Q Consensus 161 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~ 238 (541)
++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++. + .+||+.|++.+++.+
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~---~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCAL 178 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH---H-HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH---H-hchhHHHHHHHHHHH
Confidence 45567777777666655555555555543 35566677777778889999999999987 3 589999998777665
Q ss_pred HHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhcCCCchhH
Q 009185 239 AVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLR 318 (541)
Q Consensus 239 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
+..+..++.+|+++. +.+.++. .+ ..++......+++. ++
T Consensus 179 ~~~~~~~~~~~~~~~---~~~~~~~-------~~-----------------------~~~~~~~~~~~~~~-------~~ 218 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPS---SATVANA-------VG-----------------------ANHSAFSLKLALEL-------FR 218 (417)
T ss_dssp THHHHSCSSCCCCSC---SSCSSSS-------SS-----------------------SCCCCCCHHHHHHH-------TT
T ss_pred HHHHHHHHcCccccc---ccccccc-------cc-----------------------cccccccHHHHHHH-------hc
Confidence 555555554443210 0000000 00 00000000111222 22
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS---KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTG 395 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 395 (541)
++.++...+..+.....+.....+.|.|+.+..... ....+....+..++.+++.++.+++.||+|||+.+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 344444444333333344445556777776543321 23345566677788889999999999999999988877777
Q ss_pred HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHH-HHHHHHHHHHH
Q 009185 396 MAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLA-ISVNRLVSGIV 474 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~ 474 (541)
.+++.+++.+.. ..+... ......++......+..+.++.|.+|++.|+++.++. +...++|+.++
T Consensus 299 ~~~~~~~~~~~~---------~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 299 MSVRIIGSSFAT---------SALEVV----ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHTTCC---------SHHHHH----HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHhc---------cHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 666554443211 112111 1111111111112233457889999999999999994 88888999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 475 AMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 475 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
|.+.|.+.+..|+...|.+.+++++++.++.+...+|+++
T Consensus 366 p~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp THHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred hhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999998888888888888888777766555555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=252.43 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=138.5
Q ss_pred hhHHHHhhhcC------CChhHHHHHHHHHHHHHHHHHhhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Q 009185 91 GAILYIRDNLN------ITSIQVEVLVGSLNVCSLIGSLAAGKTSDCI-GRRYTIVLAAATFLLGALLMGLAP-SFLFLM 162 (541)
Q Consensus 91 ~~~~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~a~-~~~~l~ 162 (541)
...+++.+++| .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33446788899 9999999999999999999999999999999 999999999999999999999999 999999
Q ss_pred HHHHHHhhcccccccchhhhhhhcCccccchhhchH---hHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHH
Q 009185 163 AGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSL---PEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIA 239 (541)
Q Consensus 163 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~ 239 (541)
++|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+. +..|||+.|++.+++.++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877666 88999999999999999988 678999999998777666
Q ss_pred HHHHHhc
Q 009185 240 VAFGVIA 246 (541)
Q Consensus 240 ~~~~~~~ 246 (541)
..+..++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 6555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=141.33 Aligned_cols=183 Identities=15% Similarity=0.056 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHH
Q 009185 317 LRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGM 396 (541)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 396 (541)
.+++.++...+..+........+....|.+.++. .+....+++.+...++..++.++.|+++||+|||+.+.++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 4455666666777777777777777888888777 56667777899999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHH
Q 009185 397 AVSLAVLGL----GSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSG 472 (541)
Q Consensus 397 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 472 (541)
+++.+++.+ .... + .+++..+..+++.....+...+++.|.+|+++|+.++|+.+....+|..
T Consensus 103 ~~~~~~~~~~~~~~~~~---------~----~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSI---------A----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp HHHHHHHHHCHHHHSSS---------S----HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccH---------H----HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH
Confidence 998888877 3332 1 3334444555555556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 473 IVAMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 473 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
++|.+.+.+.+..| |+..|++.+++.++..++.+++.+|+.+
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999889898 9999999998888877777677776543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=130.09 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhc-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-cCCchHHHHhHH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDA-----GINSKKQLVGVTVIMGIAKTSFVLISALYLDH-FGRRPLLMLGST 394 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 394 (541)
.++...+..++....++....+++.|+++. .+.+....+.+.+...++..++.++.|+++|| +|||+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 455556666667777788888889998876 66778888889999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh--hhhhhHHHHHHHHHHHH
Q 009185 395 GMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF--RAQGSSLAISVNRLVSG 472 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~~~~ 472 (541)
+.+++.+++.+.... + .+.+..+..+++.....+...+++.|.+|++. |+.+.++.+....+|..
T Consensus 94 ~~~~~~~~~~~~~~~---------~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 160 (491)
T 4aps_A 94 LIMLGHIVLALPFGA---------S----ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF 160 (491)
T ss_dssp HHHHHHHHHHSCCST---------T----HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH---------H----HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH
Confidence 888888777653221 2 22333334444444455777889999999988 78888889999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhh
Q 009185 473 IVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFF 508 (541)
Q Consensus 473 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 508 (541)
++|.+.+.+.+..||+..|++.++..+++.++.++.
T Consensus 161 ~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 161 IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877766666555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=130.13 Aligned_cols=173 Identities=16% Similarity=0.052 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHhhhhhhHhhccHHHHhhcCC------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHhH
Q 009185 321 LIAAIGVNFFMQASGNDAVVYYSPEVFKDAGI------NSKKQLVGVTVIMGIAKTSFVLISALYLDHF-GRRPLLMLGS 393 (541)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~ 393 (541)
.++...+..++....++....+++.|+.+..+ .+....+.+.....++..++.++.|+++||+ |||+.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34555566666677777788888888877666 6777788889999999999999999999999 9999999998
Q ss_pred HHHHHHHHHHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHH---HHHHHHH
Q 009185 394 TGMAVSLAVLGLGS-KYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSL---AISVNRL 469 (541)
Q Consensus 394 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~ 469 (541)
++.+++.+++.+.. .. + .+.+..+..+++.....+...+++.|.+|++.|+.+.+. .+...++
T Consensus 93 ~~~~~~~~~~~~~~~~~---------~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 93 LIYCVGHAFLAIFEHSV---------Q----GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHTSSCH---------H----HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccH---------H----HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 88888887776643 21 1 233334445555556667888999999999999876666 8899999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009185 470 VSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFY 506 (541)
Q Consensus 470 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 506 (541)
|..++|.+.+.+.+..+|+..|++.+++.++..++.+
T Consensus 160 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999888877666555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=132.07 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccchhhhh
Q 009185 104 SIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIAPVYT 183 (541)
Q Consensus 104 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i 183 (541)
....+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888888999999999999999999999999999988888888888888888888888888777777778899
Q ss_pred hhcCccccchhhchH-hHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH-hcCCCChH
Q 009185 184 TEISPAMTRGFLSSL-PEVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV-IAMPESPR 252 (541)
Q Consensus 184 ~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~p~ 252 (541)
.|.+|++.|+.+.++ ++....+|.+++|.+++.+. +..|++..|.+.+++.++..+.. ++.||.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH---HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999998 47888999999999999988 67789999988777777666543 44666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=127.80 Aligned_cols=153 Identities=11% Similarity=-0.045 Sum_probs=126.7
Q ss_pred hhhhhHH-H-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 009185 88 VMSGAIL-Y-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGR 165 (541)
Q Consensus 88 ~~~~~~~-~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r 165 (541)
......| + +.+.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++..
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 354 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL- 354 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-
Confidence 3444455 4 445569999999999999999999999999999999999999999999999999999998888765554
Q ss_pred HHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcch-hHHHHHhhhHHHHHHHHHH
Q 009185 166 VVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHIN-WRLMLGLAALPAIAVAFGV 244 (541)
Q Consensus 166 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~g-wr~~f~~~~~~~~~~~~~~ 244 (541)
++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+. +..| ++..|++.++..++..+..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH---HHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999865 888888776 56699999999999998 7778 9988887655555444443
Q ss_pred hc
Q 009185 245 IA 246 (541)
Q Consensus 245 ~~ 246 (541)
++
T Consensus 430 ~~ 431 (438)
T 3o7q_A 430 RF 431 (438)
T ss_dssp TT
T ss_pred HH
Confidence 33
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-13 Score=126.61 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=135.7
Q ss_pred HHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHHHHHHHH
Q 009185 325 IGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLG 404 (541)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 404 (541)
+.+..+.............|.+.++.+. +....+.......++..++.+..|+++||+|||+.+..+..+..++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 3444455555666666677877766654 556677788999999999999999999999999999999999988888877
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009185 405 LGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRA 484 (541)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 484 (541)
+.... + .+....+..+.+.....+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+.
T Consensus 84 ~~~~~---------~----~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 84 TTSSL---------T----VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHH---------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HhccH---------H----HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 65432 1 2333344445555555577778889999999999999999999999999999999999888
Q ss_pred hcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 009185 485 VTFGGMFFILSGITAVGTVFFYFFLPETKG 514 (541)
Q Consensus 485 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
.+|+..+.+.+++.++..+..++..||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 899999888887777666655555665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-12 Score=124.33 Aligned_cols=166 Identities=16% Similarity=0.081 Sum_probs=120.2
Q ss_pred ccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhc-----ccHH
Q 009185 85 DIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLA-----PSFL 159 (541)
Q Consensus 85 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a-----~~~~ 159 (541)
....+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.. ++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence 33445556678888888888888888888888999999999999999999999999998888877766543 1222
Q ss_pred HHHH-HHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhhhcCC---CCcchhHHHHHhhhH
Q 009185 160 FLMA-GRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGL---PEHINWRLMLGLAAL 235 (541)
Q Consensus 160 ~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---~~~~gwr~~f~~~~~ 235 (541)
.++. .-+..+++. +..+....+.+|.+|.+.|+.++++......+|..+++.+.+.+.+. ....++.+.|++.++
T Consensus 372 ~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 372 ALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2222 222233332 24467788999999999999999999999999998888777666410 012345567777666
Q ss_pred HHHHHHH-HHhcCCCCh
Q 009185 236 PAIAVAF-GVIAMPESP 251 (541)
Q Consensus 236 ~~~~~~~-~~~~~~e~p 251 (541)
++++..+ .++++||+.
T Consensus 451 ~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHheecCCC
Confidence 6666555 567799993
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 541 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-20 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 92.4 bits (228), Expect = 1e-20
Identities = 53/465 (11%), Positives = 119/465 (25%), Gaps = 47/465 (10%)
Query: 61 KPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLI 120
P + + + + A+ Y+ + + + + +++
Sbjct: 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGF 74
Query: 121 GSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAP----SFLFLMAGRVVSGIGVGYSL 176
G SD R + L MG P S + + G G
Sbjct: 75 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 134
Query: 177 MIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLG--LAA 234
RG + S+ N G + + + L + A
Sbjct: 135 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 194
Query: 235 LPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHA 294
L A+ + P+S ++ D
Sbjct: 195 LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD---------------------------- 226
Query: 295 ASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINS 354
N + + + L L+ I + ++ +SP K+ +
Sbjct: 227 ---YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA 283
Query: 355 KKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSD 414
+ + A L+ D R G M + + +++ +
Sbjct: 284 LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY--WMNPAG 341
Query: 415 IKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIV 474
I + VI F G + +++ E+ P K + L +
Sbjct: 342 NPTVDMICMIVIG------FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395
Query: 475 AMSFLSISRAVT-FGGMFFILSGITAVGTVFFYFFLPETKGKSLE 518
A + + + + G F ++ G + + + + K + +
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 66.3 bits (160), Expect = 3e-12
Identities = 51/428 (11%), Positives = 115/428 (26%), Gaps = 53/428 (12%)
Query: 94 LYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMG 153
+++ D +I+ ++ ++++ SL+ G SD +G R ++ L+
Sbjct: 32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91
Query: 154 LAPSFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAM--TRGFLSSLPEVFINFGILLGY 211
+ L +V I G L A S+ +G+
Sbjct: 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW 151
Query: 212 ISNYALSGLPEHINWRLMLGLAALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTS 271
++ G+ IN + + L + A+ +A + A
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN------- 204
Query: 272 DSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFM 331
+ L L L + + IGV+
Sbjct: 205 ----------------------------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236
Query: 332 QASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLML 391
++ + T + G T L++A + +
Sbjct: 237 DVFDQQFANFF---------TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287
Query: 392 GSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIF 451
G + ++ ++ + + I + + Y + F
Sbjct: 288 GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL------VGCFKYITSQF 341
Query: 452 PTKFRAQGSSLAISVNRLVSGIVAMSFLS-ISRAVTFGGMFFILSGITAVGTVFFYFFLP 510
+F A + + ++ I + ++ F G + +L + T+ F L
Sbjct: 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Query: 511 ETKGKSLE 518
SL
Sbjct: 402 GPGPLSLL 409
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 38.6 bits (88), Expect = 0.002
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 8/198 (4%)
Query: 316 PLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLI 375
L+ G+ FF A + P D SK + + + F +
Sbjct: 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPL 62
Query: 376 SALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFF 435
L D G R L+ TGM V A + ++ +
Sbjct: 63 FGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--------PLLQYNILVGSIVGGIYL 114
Query: 436 SIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSFLSISRAVTFGGMFFILS 495
+ I R+ + V + S + I + +F++ S
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174
Query: 496 GITAVGTVFFYFFLPETK 513
G + V +F +
Sbjct: 175 GCALILAVLLFFAKTDAP 192
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-41 Score=334.52 Aligned_cols=411 Identities=12% Similarity=0.023 Sum_probs=301.6
Q ss_pred cCCccchHHHHHHHHHHhhhhhhcccchhhhhHHHHhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Q 009185 61 KPRFNKYALTGAILASTNSILLGYDIGVMSGAILYIRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVL 140 (541)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 140 (541)
++..+|++|.++..++++++..++++..++.+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 3455666777778888888888888888999999876 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc----cHHHHHHHHHHHhhcccccccchhhhhhhcCccccchhhchHhHHHHHHHHHHHHHHHhh
Q 009185 141 AAATFLLGALLMGLAP----SFLFLMAGRVVSGIGVGYSLMIAPVYTTEISPAMTRGFLSSLPEVFINFGILLGYISNYA 216 (541)
Q Consensus 141 ~~~~~~i~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 216 (541)
+.++.+++.+++++++ +++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 9999999999998874 788999999999999999999999999999999999999999999999999999988887
Q ss_pred hcCCCCcchhHHHHHhhhHHHHHHHH-HHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhh
Q 009185 217 LSGLPEHINWRLMLGLAALPAIAVAF-GVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAA 295 (541)
Q Consensus 217 l~~~~~~~gwr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (541)
+.. ...+||+.|++.+++.++..+ .+++++|+|+........+...+. .+... +..
T Consensus 175 ~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------------~~~ 231 (447)
T d1pw4a_ 175 GMA--WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY--------PDDYN-------------EKA 231 (447)
T ss_dssp HHH--HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------------
T ss_pred Hhh--hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc--------ccchh-------------hcc
Confidence 651 234899999987777666554 445566665422111111100000 00000 000
Q ss_pred ccCCcCCcchhHHhhcCCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 009185 296 SSNNWQGQGVWKELLLRPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLI 375 (541)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (541)
+++...++...+ ..++++.++......++.....+....+.|.|+.+..+.+....+.......++.+++.++
T Consensus 232 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (447)
T d1pw4a_ 232 EQELTAKQIFMQ-------YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 304 (447)
T ss_dssp ----CCTHHHHH-------HTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHH-------HHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhh
Confidence 000000011111 1244566777777777778888888999999999988888888888899999999999999
Q ss_pred HHHHHhhcCCchHHHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchh
Q 009185 376 SALYLDHFGRRPLLMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKF 455 (541)
Q Consensus 376 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 455 (541)
.|++.||++|++..........+............ ....+ ......+..++...+..+....+..|.+|++.
T Consensus 305 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 305 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----AGNPT----VDMICMIVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC----TTCHH----HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred hhhhhhhccccccccccchhHHHHHHHHHHHHhcc----cccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999987655444443333333322221111 01112 22222333344444445666788899999999
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 009185 456 RAQGSSLAISVNRLVS-GIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLP 510 (541)
Q Consensus 456 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 510 (541)
|+++.|+.+...++++ .++|.+.|.+.+..|+...+++.+++++++.++.+.+.+
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988855 567889999999999998888888877777766655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.5e-30 Score=248.29 Aligned_cols=382 Identities=17% Similarity=0.133 Sum_probs=251.9
Q ss_pred hhhhcccchhhhhHHH-HhhhcCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccH
Q 009185 80 ILLGYDIGVMSGAILY-IRDNLNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSF 158 (541)
Q Consensus 80 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~ 158 (541)
+...+..+...+.+|. +.+++|+|++++|++.+++.++..++++++|+++||+||||+++++..+..++.++..+..+.
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444556667788874 778899999999999999999999999999999999999999999999999999998887766
Q ss_pred HHH----HHHHHHHhhcccccccchhhhhhhcCcc--ccchhhchHhHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHh
Q 009185 159 LFL----MAGRVVSGIGVGYSLMIAPVYTTEISPA--MTRGFLSSLPEVFINFGILLGYISNYALSGLPEHINWRLMLGL 232 (541)
Q Consensus 159 ~~l----~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~ 232 (541)
... ++.+.+.+.+.+...........+..++ +++.+..+........|..+++.+++.+. ..+|++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 172 (417)
T d1pv7a_ 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF----TINNQFVFWL 172 (417)
T ss_dssp HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc----cccccccccc
Confidence 554 4555666666665555555554444433 34556667778888999999999999987 3455555555
Q ss_pred -hhHHHHHHHHHHhcCCCChHHHHhcCChHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhhccCCcCCcchhHHhhc
Q 009185 233 -AALPAIAVAFGVIAMPESPRWLVMKGRFADAKQALIKTSDSVEEAEFRLNEMTRTIADLGHAASSNNWQGQGVWKELLL 311 (541)
Q Consensus 233 -~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (541)
.....+...+..+..+|++.. .+.++..+. .+.............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------------------------------~~~~~~~~~~~~~~~ 218 (417)
T d1pv7a_ 173 GSGCALILAVLLFFAKTDAPSS----ATVANAVGA------------------------------NHSAFSLKLALELFR 218 (417)
T ss_dssp HHHHHHHHHHHHHSSCCCSCSS----SCSSHHHHS------------------------------CCCCCCHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHhcccccc----hhhhhhhhh------------------------------hcccccccccccccc
Confidence 444445555566667766531 111110000 000000001111111
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCC---CCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchH
Q 009185 312 RPSRPLRRILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGI---NSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPL 388 (541)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 388 (541)
................ .........+.+...... .+....+.......++..++..+.+++.||+++|+.
T Consensus 219 ---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 291 (417)
T d1pv7a_ 219 ---QPKLWFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp ---SSHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred ---cccccchhhhhHHHHH----HHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence 1111111111111111 112222222222222221 223344556677788889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHH-HHH
Q 009185 389 LMLGSTGMAVSLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAI-SVN 467 (541)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~ 467 (541)
+.++..+.+++.+++.+... .+. .....+..++......+...++..|.+|++.|+++.|+.. ...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (417)
T d1pv7a_ 292 LLLAGTIMSVRIIGSSFATS---------ALE----VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358 (417)
T ss_dssp HHHHHHHHHHHHHHHHTCCC---------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTH
T ss_pred hhhhHHHHHHhhhccccccc---------cch----hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 99988888887777655322 122 2222333333333444667788899999999999999864 556
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 009185 468 RLVSGIVAMSFLSISRAVTFGGMFFILSGITAVGTVFFYFFLPETKGKSLED 519 (541)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (541)
.+|..++|.+.|.+.|..|+...+++.++++++..++..+.+++++..+..+
T Consensus 359 ~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 7899999999999999999999999999988888888877777776665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.7e-15 Score=141.13 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=129.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccccccch
Q 009185 100 LNITSIQVEVLVGSLNVCSLIGSLAAGKTSDCIGRRYTIVLAAATFLLGALLMGLAPSFLFLMAGRVVSGIGVGYSLMIA 179 (541)
Q Consensus 100 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~ 179 (541)
.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 34455677888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCccccchhhchHh-HHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHhhhHHHHHHHHHH-hcCCC
Q 009185 180 PVYTTEISPAMTRGFLSSLP-EVFINFGILLGYISNYALSGLPEHINWRLMLGLAALPAIAVAFGV-IAMPE 249 (541)
Q Consensus 180 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e 249 (541)
.+++.|.+|+++|+++.++. +....+|..++|.+.+++. +..||++.|++.+++.++..++. +.+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999975 5677899999999999998 88899999998777766655543 44443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.4e-13 Score=133.43 Aligned_cols=184 Identities=13% Similarity=0.012 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhccHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhHHHHHH
Q 009185 319 RILIAAIGVNFFMQASGNDAVVYYSPEVFKDAGINSKKQLVGVTVIMGIAKTSFVLISALYLDHFGRRPLLMLGSTGMAV 398 (541)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 398 (541)
...+..+.+.++........+....| ++++. +.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSS-TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 33344444444444333334444455 44554 45667778789999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHhccccccceeeecccCCchhhhhhhHHHHHHHHHHHHHHHHHH
Q 009185 399 SLAVLGLGSKYLDQSDIKPAWAIALCVIAVCAAVSFFSIGLGPITWVYSSEIFPTKFRAQGSSLAISVNRLVSGIVAMSF 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (541)
+.++.++........ + .+++..+..+++.....+....++.|.+|+++|+.++|+.+....+|..+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~-----~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 102 VMLFMGFVPWATSSI-----A----VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp HHHHHHHCHHHHSSS-----S----HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHhhccccchhhhhH-----H----HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence 888877654332110 1 3344444455555555567778899999999999999999999999999999988
Q ss_pred HHHHHhh-cchhHHHHHHHHHHHHHHHHHhhcccCC
Q 009185 479 LSISRAV-TFGGMFFILSGITAVGTVFFYFFLPETK 513 (541)
Q Consensus 479 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (541)
+.+.+.. +|+..+++.+.+.++..++.+.+.++.+
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence 8777654 6888888888888777777767666543
|