Citrus Sinensis ID: 009231
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 539 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M817 | 607 | Probable peptide transpor | yes | no | 0.981 | 0.871 | 0.478 | 1e-153 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.981 | 0.895 | 0.472 | 1e-148 | |
| Q9LYD5 | 481 | Putative peptide/nitrate | no | no | 0.873 | 0.979 | 0.4 | 1e-101 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.953 | 0.829 | 0.335 | 2e-91 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.927 | 0.851 | 0.329 | 2e-88 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.946 | 0.894 | 0.336 | 3e-86 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.931 | 0.814 | 0.316 | 1e-84 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.972 | 0.879 | 0.338 | 1e-84 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.914 | 0.888 | 0.322 | 2e-82 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.929 | 0.787 | 0.311 | 2e-82 |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/568 (47%), Positives = 372/568 (65%), Gaps = 39/568 (6%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+ML++AL F LASP YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVE---------------------------------QASSMDRHVTPN---FEIPSGS 330
LCT + QA+SMDR ++ + F++P+GS
Sbjct: 319 LCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGS 378
Query: 331 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAA 390
F +F I+ L +W+ LYDRAV+PLASKI+G+P +LS+KLRMG+GL S +M A+VE+
Sbjct: 379 FGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESF 438
Query: 391 RRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAS 450
RR AI++G +++ AVV +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA+
Sbjct: 439 RRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAA 498
Query: 451 TLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLY 510
+L G G++ A+L+AS+++NAV+++T R G W+ NINKGHY+YYYW+L +S N +Y
Sbjct: 499 SLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIY 558
Query: 511 YLACCKAYGPFKGRVGTAFDDKDGMEEE 538
Y+ C +YGP +V + EEE
Sbjct: 559 YVICSWSYGPLVDQVRNGRVNGVREEEE 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/569 (47%), Positives = 361/569 (63%), Gaps = 40/569 (7%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+W AAT
Sbjct: 18 ITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAAT 77
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR-NGCESA 125
NF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C C SA
Sbjct: 78 NFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSA 137
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T SQL LY AF L+S+GSGGIR SLAFGA+QLD + K++ L+S+F WYY S +
Sbjct: 138 TSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVA 197
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++A T IVYIQD+LGWK+GFG+PA++MLL+ F ASP YVK + SL GL QV+
Sbjct: 198 VLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVA 257
Query: 246 ASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 304
A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG A N
Sbjct: 258 AAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLALNQ 317
Query: 305 NSLCTVE---------------------------------QASSMDRHVTPN--FEIPSG 329
LCT + QA SMDR ++ N F+IP+G
Sbjct: 318 WRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPAG 377
Query: 330 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 389
SF +F I+ L W+ LYDRA+LPLASKI+G+P ++++K+RMG+GL S +M A VE
Sbjct: 378 SFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEH 437
Query: 390 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 449
RR AI++G+++D + V +SAMW +P VL GLA A IGQTEF+YTE PKSMSSIA
Sbjct: 438 YRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSIA 497
Query: 450 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509
++L G G++ AN++AS+I+NAV + +K+ GN WI NINKGHYDYYYW+L LS N +
Sbjct: 498 ASLFGLGMAVANILASVILNAVKNSSKQ-GNVSWIEDNINKGHYDYYYWVLAILSFVNVI 556
Query: 510 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 538
YY+ C +YGP +V D +GM +E
Sbjct: 557 YYVVCSWSYGPTVDQVRN--DKVNGMRKE 583
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/525 (40%), Positives = 306/525 (58%), Gaps = 54/525 (10%)
Query: 1 MITEPLLINKNP-KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII 59
M E LL+ + K G+ T+PFI+A++A E++A G PNMIL+L EY M T A NI+
Sbjct: 1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60
Query: 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119
F+W+AATNF P+VGA +ADSY GR+ +IGFG L GMVLLW TTI+ P CD+L
Sbjct: 61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTII----RPECDKLT 116
Query: 120 NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK-SKGALQSYFSWY 178
N C+ T + + LY F L ++G+GG+RSS LAF A+QL ++ + +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176
Query: 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP 238
Y V + ++ + +V++Q GW++GFGV M LS FF ASP+YV+ + T
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQKPTR--- 233
Query: 239 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMP---SENLRFLNKACMAKHPEQDL 295
+ +N Q E++ K + ++P + + L AC
Sbjct: 234 --------NSRNPWKLCRVQQVEDL----KSLINVIPIWSTGIILSLVTACQVSF----- 276
Query: 296 TPDGRASNPNSLCTVEQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLA 354
V QA +MDRH FEIP GS+ IF +++ +++GLYD ++PL
Sbjct: 277 -------------IVLQAKTMDRHTFIQGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLL 323
Query: 355 SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414
S +P +L + +RM G + S ++A A E ARR A +E + ++SAMW
Sbjct: 324 SWALREPFRLGVMVRMWAGYVISVLCISALAATEYARRKTARDESGT-------KLSAMW 376
Query: 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 474
LPY++L G+A A N I Q EF+Y+ELPK+MSS+A+TLS ++AA+L++S I+ VD
Sbjct: 377 LLPYMILGGIAEALNTIAQNEFFYSELPKTMSSVATTLSSLNMAAASLISSWIITIVDVT 436
Query: 475 TKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 519
T G WI NI++GH DYYYWLL LS+ N LY++ C K+YG
Sbjct: 437 TY----GSWITENIDEGHLDYYYWLLVGLSLLNVLYFVWCKKSYG 477
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 297/564 (52%), Gaps = 50/564 (8%)
Query: 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN 67
+ K P GG R + FI+ NE ER+ ++G N ++YL + +++E A N+I IW+ TN
Sbjct: 48 VEKKP-GGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTN 106
Query: 68 FLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD-QLRNGCESAT 126
P+VGA ++D+YVGR++ I F F LLG++ + T P P +C+ Q C
Sbjct: 107 LTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166
Query: 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186
Q+ L +S+GSGGIR S+ FG +Q D+ KG + S+F+WYY+ +
Sbjct: 167 KLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKG-VASFFNWYYMTFTVVL 225
Query: 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246
I+ T +VYIQD + W +GF +P +M L+ + FF YV K S+ G+ QV+VA
Sbjct: 226 IITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVA 285
Query: 247 SFKNRRTKLPTQATEEMYHHG---KGSM--RLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+ K R+ KLP + + ++ K S+ +L S R L+KA + E DLTP+G
Sbjct: 286 ARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPEGPP 343
Query: 302 SNPNSLC----------------------------------TVEQASSMDRHVTPNFEIP 327
++ LC TV QA MDR++ P FEIP
Sbjct: 344 ADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIP 403
Query: 328 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 387
+GS ++ ++LT+ I++ YDR +P +I G ++L R+G G++F+ SM IV
Sbjct: 404 AGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIV 463
Query: 388 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 447
E RR +IN G D + MS W P L+L GL AFN+IGQ EF+ ++ P+ M S
Sbjct: 464 ERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRS 520
Query: 448 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 507
IA++L + ++ ++S ++ V + W+ N+N G DY+Y+L+ L + N
Sbjct: 521 IANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVN 580
Query: 508 FLYYLACCKAYGPFKGRVGTAFDD 531
+Y+ C + Y + +VG +D
Sbjct: 581 LVYFWYCARGY---RYKVGLPIED 601
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/546 (32%), Positives = 296/546 (54%), Gaps = 46/546 (8%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ VG + N+++YL +NM++ A ++ I+ +NF IV A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC-DQLRNGCESATWSQLMPL 133
L DSY GRY+ + F C LG V + T ++ P C ++ + C + Q+M L
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
A L+ +G+GGIR +L FGA+Q D +G ++S+F+WY+ + + +V++T I
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRG-IESFFNWYFFTFTFAQMVSLTLI 200
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PA++MLL + FF S YVK KA+ S + +T+V+V + K RR
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 254 KLPTQATEEMYHHGKGSM---RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K P E+Y++ +L +E RFL+K+ + ++ L DG + LC++
Sbjct: 261 K-PV-GPNELYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDK-LNKDGSPVDAWKLCSM 317
Query: 311 EQASSM----------------------------------DRHVTP-NFEIPSGSFNIFA 335
+Q + DR + P +F+IP+GS+ +F
Sbjct: 318 QQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFL 377
Query: 336 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 395
+L +TI+I +YDR ++P K G+ ++ R+G GL SM AIVE RR +A
Sbjct: 378 MLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVA 437
Query: 396 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 452
+ + G++ A+ MS MW +P LVL G+A A +GQ EFYY + P++M S A +L
Sbjct: 438 LTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSL 497
Query: 453 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 512
G+ A+ +++ +++AV D T+ G W+P ++NKG +Y+Y+L+ + N Y+L
Sbjct: 498 YYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFL 557
Query: 513 ACCKAY 518
Y
Sbjct: 558 LVSHWY 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 286/559 (51%), Gaps = 49/559 (8%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +++LG+GGI+ +FGA+Q D+ D K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDEND-ENEKIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M+++ FF S FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQA----------------------------------SSMDRHVTPNFEIPSG 329
P LC+V Q ++MD+H+ NFEIPS
Sbjct: 314 PWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSA 373
Query: 330 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 389
S ++F +++ W +YD+ ++PLA K + RMGIGL+ S +M ++E
Sbjct: 374 SLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEV 433
Query: 390 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 449
R D + + MS WQ+P +L G A F IGQ EF+Y + P +M S+
Sbjct: 434 VRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491
Query: 450 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509
S LS ++ N ++++++ V ITK+ G GWIP N+N+GH DY+++LL LS NFL
Sbjct: 492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551
Query: 510 YYLACCKAYGPFKGRVGTA 528
YL K Y +K VG A
Sbjct: 552 VYLWISKRY-KYKKAVGRA 569
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/546 (31%), Positives = 289/546 (52%), Gaps = 44/546 (8%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
G + +G+GGIR +LAFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M L+ L FF YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQ---------------ASSM-------------------DRHV-TPNFEIPSGSFNIFA 335
+Q ASS+ DR + + F IP+ ++ +F
Sbjct: 344 QQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFL 403
Query: 336 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 395
+ +T++I +YDR ++P +I G ++L R+G G+ F+TAS+ VE RR+ A
Sbjct: 404 MTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFA 463
Query: 396 INE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 452
+ + G++ + MSAMW +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 464 LTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSI 523
Query: 453 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 512
G ++ + S ++ V T+ G W+ ++NKG D +Y+++ + NF Y+L
Sbjct: 524 FYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFL 583
Query: 513 ACCKAY 518
+ Y
Sbjct: 584 VMSRWY 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 192/568 (33%), Positives = 298/568 (52%), Gaps = 44/568 (7%)
Query: 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLP 70
PKGGL T+PFI ANE E++A VGF NMI YL + ++ T A N + + ++ P
Sbjct: 22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81
Query: 71 IVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130
++GA +ADS+ GR+ I F +GM LL + I+P +PP C C A +QL
Sbjct: 82 LLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKG-EEVCVVADTAQL 140
Query: 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190
LY A L +LGSGGIR +AFGA+Q D+ D ++ +YF+WYY + A+ ++AV
Sbjct: 141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTW-NYFNWYYFCMGAAVLLAV 199
Query: 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250
T +V+IQDN+GW +G G+P V M LS ++F Y S L QV VA+F+
Sbjct: 200 TVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRK 259
Query: 251 RRTKLPTQAT-----EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305
R+ ++ + + +E+ +L ++++ FL+KA + E+D G+ N
Sbjct: 260 RKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVT--EEDNLKPGQIPNHW 317
Query: 306 SLCTV----------------------------------EQASSMDRHVTPNFEIPSGSF 331
L TV +QA +M+RH+T +F+IP+GS
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
Query: 332 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAAR 391
++F + + I YDR + +A K G ++ RMGIG + S + VE R
Sbjct: 378 SVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKR 437
Query: 392 RSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIAST 451
+S+AI G+ D +V +S +W +P L G+A AF IG EF+Y + P+SM S A+
Sbjct: 438 KSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATA 497
Query: 452 LSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLY 510
L +S N V++L++ V + + W+P +N+N+G +Y+YWL+T L N +Y
Sbjct: 498 LFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVY 557
Query: 511 YLACCKAYGPFKGRVGTAFDDKDGMEEE 538
YL C K Y +V + +D ++EE
Sbjct: 558 YLWCAKIYTYKPVQVHHSKEDSSPVKEE 585
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 288/537 (53%), Gaps = 44/537 (8%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +P+II NE ER+AT G N ++Y+ REY+M+ A +I W+A TNF PI+GA
Sbjct: 21 GWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGA 80
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMP 132
++DSY G++ I FG LLGM++L T+++P +PP C DQ+ C ++SQL
Sbjct: 81 FISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTADQITGQCIPYSYSQLYV 140
Query: 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
L L+S+G+GGIRS S+ F +Q D +G+ +S+FSWYY + +V++T
Sbjct: 141 LLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGS-RSFFSWYYTTHTIVQLVSMTL 199
Query: 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252
++Y+Q+N+ W +GF +P V+ + L F+ + +YV K S+ G+ +VLVA++K R+
Sbjct: 200 VLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRK 259
Query: 253 TKLPT--QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR---------- 300
+ + + + S +L+ ++ RFLNKA + + ++ + R
Sbjct: 260 ARFTSGIDYHQPLLETDLQSNKLVLTDQFRFLNKAVIVMNNDEAGNEEWRTCTVRQIEDI 319
Query: 301 ------------------ASNPNSLCTVEQASSMDRHVT-PNFEIPSGSFNIFAILTLTI 341
A N TV QA MD ++ IP S + ++L + I
Sbjct: 320 KSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPASITVISLLNIGI 379
Query: 342 WIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 401
W+ Y+ ++ I + +SL ++GIG +FS ++M IVE RR +++N
Sbjct: 380 WLPFYETVLVRHIENITKQNGGISLLQKVGIGNIFSISTMLISGIVERKRRDLSLNG--- 436
Query: 402 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN 461
V+MS W P VL G F ++G TEF+ ++P +M SI ++L GLS A+
Sbjct: 437 ------VKMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVPINMRSIGNSLLYLGLSLAS 490
Query: 462 LVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518
++S +++ V +T RGG W+ +I+K D +Y+ + ALS NF+++ C + Y
Sbjct: 491 YLSSAMVSIVHSVTARGGQ-SWLTDDIDKSKLDCFYYFIAALSTLNFIFFFWCARRY 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/545 (31%), Positives = 285/545 (52%), Gaps = 44/545 (8%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF + A
Sbjct: 64 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSGTINFGTFIAA 123
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLY 134
L D+Y GRY+ + C LG ++ T +P P AC + CE + Q++ L
Sbjct: 124 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGN-KISCEGPSVGQILFLL 182
Query: 135 FAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194
G + +G+GGIR +LAFGA+Q + + KG + S+F+WY+ + + I+++T +V
Sbjct: 183 MGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKG-INSFFNWYFFTFTFAQIISLTAVV 241
Query: 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254
YIQ N+ W +G +P +M L+ + FF YVK KA+ S L G+ +V+ A+ K R K
Sbjct: 242 YIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLK 301
Query: 255 LPTQATEEMYHH---GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE 311
Q +Y+H + L ++ RFL+KA + PE+ L DG AS+P LCT++
Sbjct: 302 PVKQPWVNLYNHIPSNYANTTLKYTDQFRFLDKAAIMT-PEEKLNSDGTASDPWKLCTLQ 360
Query: 312 QASSM----------------------------------DRHV-TPNFEIPSGSFNIFAI 336
Q + DR + + F IP+ ++ +F +
Sbjct: 361 QVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLM 420
Query: 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 396
+T++I YDR ++P ++ G +SL R+G G F+ S+ +E RR+ A+
Sbjct: 421 TGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFAL 480
Query: 397 NE---GISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS 453
+ G++ + MSA+W +P L L+G+A AF IGQ EFYY + P++M S A ++
Sbjct: 481 TKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIF 540
Query: 454 GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 513
G ++ +AS +++ V T +G W+ ++NK DY+Y++LT L + N Y+L
Sbjct: 541 YVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLL 600
Query: 514 CCKAY 518
+ Y
Sbjct: 601 MARWY 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 539 | ||||||
| 255550992 | 578 | nitrate transporter, putative [Ricinus c | 0.977 | 0.911 | 0.580 | 0.0 | |
| 224087732 | 605 | predicted protein [Populus trichocarpa] | 0.981 | 0.874 | 0.557 | 1e-180 | |
| 224106908 | 606 | predicted protein [Populus trichocarpa] | 0.988 | 0.879 | 0.548 | 1e-179 | |
| 224141763 | 581 | predicted protein [Populus trichocarpa] | 0.996 | 0.924 | 0.557 | 1e-176 | |
| 224141759 | 564 | predicted protein [Populus trichocarpa] | 0.959 | 0.916 | 0.560 | 1e-176 | |
| 224141757 | 568 | predicted protein [Populus trichocarpa] | 0.959 | 0.910 | 0.564 | 1e-174 | |
| 356507909 | 568 | PREDICTED: probable peptide transporter | 0.966 | 0.917 | 0.546 | 1e-172 | |
| 224141761 | 515 | predicted protein [Populus trichocarpa] | 0.892 | 0.933 | 0.574 | 1e-168 | |
| 255549914 | 612 | nitrate transporter, putative [Ricinus c | 0.981 | 0.864 | 0.510 | 1e-167 | |
| 225442569 | 584 | PREDICTED: probable peptide transporter | 0.990 | 0.914 | 0.514 | 1e-165 |
| >gi|255550992|ref|XP_002516544.1| nitrate transporter, putative [Ricinus communis] gi|223544364|gb|EEF45885.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/562 (58%), Positives = 399/562 (70%), Gaps = 35/562 (6%)
Query: 7 LINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAAT 66
LI+ N KGG R LPFI+ N AFE++A+ G TPNMILYL REY +E NIIF W+AAT
Sbjct: 16 LISSNQKGGFRVLPFIVVNMAFEKVASFGLTPNMILYLTREYRIEAAKGANIIFFWSAAT 75
Query: 67 NFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL-RNGCESA 125
NF PI+GA +ADSYVGR+RMIGFG LLG++LLW T ++P A+P CDQ + C+S
Sbjct: 76 NFTPILGAFIADSYVGRFRMIGFGSIASLLGIILLWLTAVIPQARPLPCDQFTSDSCQSP 135
Query: 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSAS 185
T QL+ LY +FGL+S+G+GGIRSSSLAFGA+QL G K G L+ + SWYYV VS S
Sbjct: 136 TTLQLLLLYSSFGLLSIGAGGIRSSSLAFGADQLGMGQSLKRAGILERFISWYYVLVSVS 195
Query: 186 SIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLV 245
++VA+TCIVYIQD +GWKVGFGVP V+M ++ LSFF AS FYVKSK S G QVL
Sbjct: 196 AVVAMTCIVYIQDAMGWKVGFGVPVVLMAIAVLSFFSASSFYVKSKPTASSFTGFAQVLA 255
Query: 246 ASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305
A++ NR +Q + + YH+ KG+ + PSE LRFLNKAC+ ++PE+DLTPDGRASNP
Sbjct: 256 AAYHNRSIPFSSQDSNDGYHNRKGATVVAPSEMLRFLNKACIIENPEEDLTPDGRASNPW 315
Query: 306 SLCTVE---------------------------------QASSMDRHVTPNFEIPSGSFN 332
SLCTV QAS+MDRH+ FEIP+GS N
Sbjct: 316 SLCTVNQVEELKALIKIIPIWLSGMIMSVNVAQSSFPVLQASTMDRHIISKFEIPAGSMN 375
Query: 333 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 392
+F +++L IW+ LYDR ++PLASK++GKP +LSLK RMGIG+L S+ASM A+AI E RR
Sbjct: 376 VFMVISLAIWVSLYDRVIVPLASKLRGKPVRLSLKQRMGIGILLSSASMLAFAIAEKNRR 435
Query: 393 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL 452
AI EG SDD AVV MS +W LPYLVL GLA F+ IGQ EFYYTELPKSMSSIA+TL
Sbjct: 436 ERAIREGFSDDPNAVVNMSVLWLLPYLVLCGLAETFSAIGQNEFYYTELPKSMSSIAATL 495
Query: 453 SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYL 512
GLSAANL+AS IM+ +D +KRGG W+ SNINKGHYDYYYWLL +LS+ NF+YYL
Sbjct: 496 FDMGLSAANLLASFIMSTIDSFSKRGGEESWVSSNINKGHYDYYYWLLASLSLLNFVYYL 555
Query: 513 ACCKAYGPFKGRVGTAFDDKDG 534
AC K YGP + + G A DD DG
Sbjct: 556 ACSKGYGPCRAKEGNAPDD-DG 576
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087732|ref|XP_002335129.1| predicted protein [Populus trichocarpa] gi|222832886|gb|EEE71363.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 328/588 (55%), Positives = 398/588 (67%), Gaps = 59/588 (10%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGC-ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA+ P+C Q + C AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------------------------- 311
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 312 -------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 364
QAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 424
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 425 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 484
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVCGFIGEANQESWV 538
Query: 485 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDD 531
SNINKGHYDYYYWLL +L ANF+YYLAC KAYGP K G+ G DD
Sbjct: 539 SSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDD 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106908|ref|XP_002333609.1| predicted protein [Populus trichocarpa] gi|222837572|gb|EEE75937.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 325/592 (54%), Positives = 400/592 (67%), Gaps = 59/592 (9%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL +PKGG+R L FIIANEA ER+A+ G + NMILYL REY M+ + I+F
Sbjct: 1 MITEPLL--SSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL----------------------GM 98
+++AA NF+PI+GA LAD+YVGRY MIGFGC LL GM
Sbjct: 59 LYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLTTIYVSGQRIYGSVAILSQTKVGM 118
Query: 99 VLLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAE 157
VLLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+
Sbjct: 119 VLLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGAD 178
Query: 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217
QL K D K G L+S+FSWYYV SAS +++TCIVYIQD +GWKVGFGVP V+M+LS
Sbjct: 179 QLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMGWKVGFGVPVVLMILST 238
Query: 218 LSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277
LSFFLASP YVK K S L G +VLVAS++ RR +L T+E+YHH KGS ++PSE
Sbjct: 239 LSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPSE 298
Query: 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------------------------- 311
+RFLNKAC+ K+PE+DL PDGRAS+P +LCTV+
Sbjct: 299 RIRFLNKACVIKNPEEDLMPDGRASDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVC 358
Query: 312 -------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 364
QAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 359 QNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRL 418
Query: 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 424
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G
Sbjct: 419 GLKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGF 478
Query: 425 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 484
+ A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 479 SEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWV 538
Query: 485 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK-GRVGTAFDDKDGM 535
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP K G+ G D ++G+
Sbjct: 539 SSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGL 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141763|ref|XP_002324234.1| predicted protein [Populus trichocarpa] gi|222865668|gb|EEF02799.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 318/570 (55%), Positives = 401/570 (70%), Gaps = 33/570 (5%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
I EPLL + KGGLR L FII NEAFER+A G + N+ILYL REY ++ I+++
Sbjct: 11 IKEPLLSSSTTKGGLRALIFIIVNEAFERLANYGLSTNLILYLTREYGIDAVNGAQILYL 70
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121
+AAT+F P +GA LAD+YVGRY MIGFGC CLLG++LLW TTI+PG +PP C Q +
Sbjct: 71 HSAATSFTPFIGAFLADTYVGRYFMIGFGCIACLLGVILLWLTTIIPGTRPPPCVQFHDS 130
Query: 122 CESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181
CESA+ QL+ LY + GLM++G+GGIRSSSLAFGAEQL K D K G L+S+F WYY
Sbjct: 131 CESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAEQLGKRDTLKRAGILESFFRWYYAT 190
Query: 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLT 241
VS + +A+TCI+YIQDN+GWKVGFG+P V+M+LS LSFFLASP YVKSKA L G
Sbjct: 191 VSVALFLAMTCILYIQDNMGWKVGFGIPVVLMILSTLSFFLASPIYVKSKAKAGWLDGFA 250
Query: 242 QVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301
+VLVASF+NR KL +Q T+++YHH KGS L+PSE LRFLNKAC+ ++P++DL PDGRA
Sbjct: 251 RVLVASFRNRSIKLSSQVTDDVYHHRKGSRLLVPSEKLRFLNKACVIRNPKEDLIPDGRA 310
Query: 302 SNPNSLCTVE---------------------------------QASSMDRHVTPNFEIPS 328
SNP SLCTV+ QAS+MDRH+T F++P+
Sbjct: 311 SNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVLQHSFIVLQASTMDRHITSKFQVPA 370
Query: 329 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVE 388
GSF F + + IWI LYDR +PLASKI+GKP +L LK R+GIG+L S+A+M A AI+E
Sbjct: 371 GSFTAFQLFSSVIWIALYDRVAIPLASKIRGKPTRLGLKQRIGIGILSSSAAMAALAIIE 430
Query: 389 AARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSI 448
+ RR AI EG SDD +V+ +SA+W L Y ++G A AF IGQ EF+YTELPKSMSS+
Sbjct: 431 SVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGFAEAFCGIGQNEFFYTELPKSMSSV 490
Query: 449 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 508
AS L GLS +NL+ASL++ V + K W+ SNINKGHYDYYYWLL LS+ANF
Sbjct: 491 ASNLFEMGLSVSNLIASLLVTIVRNFFKGNDQESWLSSNINKGHYDYYYWLLAGLSLANF 550
Query: 509 LYYLACCKAYGPFKGRVGTAFDDKDGMEEE 538
+YY AC KAYGP KG+ G A D + + +E
Sbjct: 551 IYYRACSKAYGPCKGQEGNATDGGEALTDE 580
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141759|ref|XP_002324232.1| predicted protein [Populus trichocarpa] gi|222865666|gb|EEF02797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 310/553 (56%), Positives = 388/553 (70%), Gaps = 36/553 (6%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N KGG+RT+PFI+ANEAFER+A+ G + NMI+YL REY M+ A ++F
Sbjct: 1 MITEPLL--SNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQAAQLLF 58
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
++++ATNF PI+ A+LADSYVGRYRMIGFGC LLGMVLLW TT P A+ P C +
Sbjct: 59 LFSSATNFTPILXAVLADSYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARQPLCVHFSH 117
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C S + QL+ LY AFG M++G+GGIRSSSLAFGA+QL + +S+F WYYV
Sbjct: 118 SCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRARIRESFFRWYYV 177
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS VA+TC+VYIQ+N+GW VGFGVP V+M+LSALSF LASPFYVKSK S + GL
Sbjct: 178 TVTASVFVAMTCVVYIQENMGWMVGFGVPVVLMILSALSFSLASPFYVKSKPKASWITGL 237
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+VASF+NR +L TQAT E+ +H GS+ +PS+ LRF NKAC+ +P+ D+TPDG
Sbjct: 238 AQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSKRLRFFNKACIVGNPQVDVTPDGN 297
Query: 301 ASNPNSLCTVE---------------------------------QASSMDRHVTPNFEIP 327
A +P SLCTV+ Q S+MDRH+T FEIP
Sbjct: 298 ALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVSQGSFIVLQVSTMDRHITSKFEIP 357
Query: 328 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 387
+ +F FA+L + +W+ LYDR ++PL SKIKG+P L LK RMGIG+L ST SM A AI
Sbjct: 358 AATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQPVCLGLKKRMGIGILLSTTSMAALAIA 417
Query: 388 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 447
E+ RR AI EG SD A + +S LP+L LSG+A AF IGQ EF+YTELPKSMSS
Sbjct: 418 ESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGVAEAFTPIGQNEFFYTELPKSMSS 477
Query: 448 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 507
+ASTL+G G+S A+LV+S I+ AV D+T G W+ SNINKGHYDYYYWLL +LS+ N
Sbjct: 478 VASTLNGIGMSVASLVSSFIVRAVRDLTTVEGQESWVSSNINKGHYDYYYWLLASLSLVN 537
Query: 508 FLYYLACCKAYGP 520
FLYYLAC K+YGP
Sbjct: 538 FLYYLACSKSYGP 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141757|ref|XP_002324231.1| predicted protein [Populus trichocarpa] gi|222865665|gb|EEF02796.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/553 (56%), Positives = 393/553 (71%), Gaps = 36/553 (6%)
Query: 1 MITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF 60
MITEPLL N+ KGG+RTLPFI+ANEAFE +A G PN+ILYL REY ++ +++F
Sbjct: 10 MITEPLLSNR--KGGIRTLPFILANEAFESLANYGLFPNLILYLTREYRIDAAKGAHVLF 67
Query: 61 IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN 120
+ ++A NF PI+GA LAD+YVGRYRMIGFGC LLGMVLLW TT P A+PP C Q
Sbjct: 68 LLSSAINFTPILGAFLADTYVGRYRMIGFGCMASLLGMVLLWLTT-FPEARPPPCVQFSY 126
Query: 121 GCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C+SAT QL+ LY AF +++G+GGIRSSSLAFGA+QL + + +S+FSWYY
Sbjct: 127 DCKSATTLQLLLLYTAFCFLAIGAGGIRSSSLAFGADQLGTSNSLEHARIRESFFSWYYG 186
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL 240
V+AS + +T +VYIQDN+GW VGFGVP V+M+LS+LSFF+ASP YVKSK S + GL
Sbjct: 187 IVAASVFLGMTFVVYIQDNIGWMVGFGVPVVLMILSSLSFFVASPSYVKSKPKASWITGL 246
Query: 241 TQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR 300
QV+V S +NRR KL +QAT+++ +H GSM L+PSE LRFLNKAC+ ++P++DLTPDG+
Sbjct: 247 AQVVVGSIRNRRIKLSSQATDKVDYHTTGSMLLVPSEKLRFLNKACIIRNPQEDLTPDGK 306
Query: 301 ASNPNSLCTVE---------------------------------QASSMDRHVTPNFEIP 327
AS+P SLCTV+ QAS+M+RH+T FE+P
Sbjct: 307 ASDPWSLCTVDQVEDLKALIKVIPIWSAGMLKSVNVSQGSFLVLQASTMNRHITSKFEVP 366
Query: 328 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIV 387
+ SF +L +T W+ LYDR ++PL SK+ GK L+LK RMGIG+L ST SM A AI
Sbjct: 367 AASFPSIVVLVITTWVVLYDRIIIPLVSKVSGKIVCLNLKQRMGIGILLSTISMAALAIA 426
Query: 388 EAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSS 447
E+ RR+ AI EG D+ A + +SAMW LPY VLSGLA AFN IGQ EF+YTELPKSMSS
Sbjct: 427 ESFRRATAIKEGFPDNPNAELHISAMWLLPYFVLSGLAEAFNAIGQNEFFYTELPKSMSS 486
Query: 448 IASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 507
+ASTL G GLSAA+LV+S I++AV D TK W+ SNINKGHYDYYYW+LT LS+ N
Sbjct: 487 VASTLQGLGLSAASLVSSFIVSAVRDFTKGEAQESWVSSNINKGHYDYYYWILTILSLVN 546
Query: 508 FLYYLACCKAYGP 520
F+YYL C K YGP
Sbjct: 547 FIYYLVCSKTYGP 559
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507909|ref|XP_003522705.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/560 (54%), Positives = 390/560 (69%), Gaps = 39/560 (6%)
Query: 1 MITEPLL--INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNI 58
+I EPLL N N KGG RTLPFIIANEAFER+A++G PNMILYL REY M+T ATN
Sbjct: 10 VIEEPLLSKQNSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTREYGMQTAGATNF 69
Query: 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118
+ +W+AA+NF P VGA+L+DSYVGRY MI FG LLGMVLLW TT++P +K P C+Q
Sbjct: 70 LLLWSAASNFTPFVGAVLSDSYVGRYSMIAFGSIASLLGMVLLWLTTLIPLSK-PLCNQF 128
Query: 119 RNGC-ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177
N C S T L+ L+ +F LMS+G+GGIRSSSLAFG +QL K D K+ G +SYFSW
Sbjct: 129 TNSCNNSPTTIHLLILHSSFALMSIGAGGIRSSSLAFGVDQLSKRD--KNAGIKESYFSW 186
Query: 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237
YY V+ SS++ +T +VYIQDN+GW VGFG+P ++M ++ SFFLASPFYV + ++L
Sbjct: 187 YYAIVAMSSLIGLTVVVYIQDNMGWAVGFGIPVILMFVATASFFLASPFYVMVEVKRNML 246
Query: 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTP 297
GL QVLVAS+KNR +LP + +YH K S LMP+E LRFLNKAC+ ++ QDLTP
Sbjct: 247 SGLAQVLVASYKNRLLQLPQETENGIYHLEKDSDLLMPTEKLRFLNKACLIRNSLQDLTP 306
Query: 298 DGRASNPNSLCTVEQ---------------------------------ASSMDRHVTPNF 324
+GRA NP +LCTV+Q ASSMDRH+T NF
Sbjct: 307 EGRALNPWNLCTVDQVEELKALIKIVPIWSTGIMMGVNISQGSLLVLEASSMDRHITSNF 366
Query: 325 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAW 384
EIPSGSF F I++L +W+ +YDR ++P+ASKIKG P + K +MGIGLL ++ +
Sbjct: 367 EIPSGSFVTFMIVSLVLWVIIYDRILVPVASKIKGSPACIGAKQKMGIGLLTGCIAIASL 426
Query: 385 AIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 444
A+VE RR IAI +G D +AVV MSA+W LP +L+GLA A ++GQ EF+ TELP+S
Sbjct: 427 AVVEDIRRKIAIEKGYEDQPQAVVNMSALWLLPRQILNGLAEALGVVGQNEFFLTELPQS 486
Query: 445 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALS 504
MSS+ASTL+G G S ANLVAS I++ VD++T GG+ W+ SNINKGHYDYYY L+ AL
Sbjct: 487 MSSLASTLNGLGSSVANLVASFILSVVDNVTGGGGHESWLSSNINKGHYDYYYTLICALC 546
Query: 505 MANFLYYLACCKAYGPFKGR 524
NF+Y+L C K+YGP K R
Sbjct: 547 FVNFVYFLYCSKSYGPCKNR 566
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141761|ref|XP_002324233.1| predicted protein [Populus trichocarpa] gi|222865667|gb|EEF02798.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 363/515 (70%), Gaps = 34/515 (6%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
MILYL REY M+ + I+F+++AA NF+PI+GA LAD+YVGRY MIGFGC LLGMV
Sbjct: 1 MILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMV 60
Query: 100 LLWSTTILPGAKPPACDQLRNGCES-ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158
LLW TTI+PGA P+C Q + C + AT QL+ LYF GLMS+G+GGIRS SLAFGA+Q
Sbjct: 61 LLWLTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGADQ 120
Query: 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218
L K D K G L+S+FSWYYV SAS +++TC+VYIQ+ +GWKVGFGVP V+M+LS L
Sbjct: 121 LSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMGWKVGFGVPVVLMILSTL 180
Query: 219 SFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 278
SFFLASP YVK KA S L G +VLVASF+ RR +L + T+E+YHH KGS ++PSE
Sbjct: 181 SFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSER 240
Query: 279 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE--------------------------- 311
+RFLNKAC+ K+PE+DL PDGRAS+P SLCTV+
Sbjct: 241 IRFLNKACVIKNPEEDLMPDGRASDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQ 300
Query: 312 ------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLS 365
QAS+M+RH+T FEIP+GSF F +L+ T+WI LYDR ++PLASKI GKP +L
Sbjct: 301 NSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRLG 360
Query: 366 LKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA 425
LK ++GIG+L S ASM AI+E RR IAI EGISD AV MSAMW LP+ L G +
Sbjct: 361 LKQKIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGFS 420
Query: 426 MAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 485
A N +G EF+YTELPKSMSS+AS L GLSAA+LVAS I++ V W+
Sbjct: 421 EAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIVSNVRGFIGEANQESWVS 480
Query: 486 SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520
SNINKGHYDYYYWLL++L ANF+YYLAC KAYGP
Sbjct: 481 SNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGP 515
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/562 (51%), Positives = 377/562 (67%), Gaps = 33/562 (5%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K+ KGGL T+PFIIANEAFE++++ G PNMI YL ++Y + NIIF+W AATNF+
Sbjct: 26 KSRKGGLITMPFIIANEAFEKVSSYGLLPNMIFYLMKDYGLGVAKGANIIFLWNAATNFM 85
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129
P++GA ++DSY+GRY IG G LLG VLLW TT++P +KPP CD + C+S T Q
Sbjct: 86 PLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLWLTTMIPQSKPPLCDLMTQNCKSPTAGQ 145
Query: 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189
+ L + +S+G+GGIR SLAFGA+QLD K++ L+SYF WYY + S ++A
Sbjct: 146 ITMLLSSMAFISIGAGGIRPCSLAFGADQLDNKSNPKNERILESYFGWYYASTAISVLIA 205
Query: 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
+T IVYIQD+ GW+VGFGVPA+++ LSA FF+ASP Y+K KA+ SLL G QVLV ++K
Sbjct: 206 LTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFIASPLYLKQKASKSLLAGFAQVLVVAYK 265
Query: 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT 309
NR+ P ++ YH K S + P+EN+RFLNKAC+ ++ EQDL PDG ASNP SLCT
Sbjct: 266 NRKIPFPPTNSDSKYHRRKNSEYITPTENIRFLNKACIIRNAEQDLAPDGSASNPWSLCT 325
Query: 310 VE---------------------------------QASSMDRHVTPNFEIPSGSFNIFAI 336
+E QASSMDRH++ F++P+GSF F +
Sbjct: 326 IEQVEELKALIRVIPIWSTGIMMSINVSQGSFQVLQASSMDRHLSSKFQVPAGSFATFVV 385
Query: 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 396
+++ IWI LYDRA+LPLA+KIKGKP +L +KLRMGIGL S M IVE RR AI
Sbjct: 386 ISMAIWIVLYDRAILPLATKIKGKPVRLGVKLRMGIGLFLSCMGMVVAGIVENVRRRKAI 445
Query: 397 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 456
+EG ++ AVVQMSA W P L+G A A N IGQTEFYYTE PKSMSSIA L G G
Sbjct: 446 HEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALNAIGQTEFYYTEFPKSMSSIAGALFGLG 505
Query: 457 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 516
++ ANL+A++I++ V++IT +GG GW+PSNIN+GHYD YYWLL +S N LY+L C
Sbjct: 506 MAVANLLATVILSLVNNITSKGGKVGWVPSNINQGHYDNYYWLLAIMSAVNLLYFLICSW 565
Query: 517 AYGPFKGRVGTAFDDKDGMEEE 538
YGP K ++ D+ +G + E
Sbjct: 566 GYGPCKEQITKVSDEGNGFKHE 587
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/569 (51%), Positives = 394/569 (69%), Gaps = 35/569 (6%)
Query: 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIW 62
+E +++ KGGL T+PFIIANEAFER+A+ G PNMILYL ++Y++ TNI+F+W
Sbjct: 7 SEQRKMSQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAKGTNILFLW 66
Query: 63 TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGC 122
+AATNFLP+VGA L+DSY+GR+ IG G T LLGM+LLW T ++P KPP CD L C
Sbjct: 67 SAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPHCDLLTQSC 126
Query: 123 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182
++ T +Q + LY +F LMS+G+GG+R SLAFGA+QLDK D K++ L+S+FSWYY
Sbjct: 127 KAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESFFSWYYASA 186
Query: 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQ 242
+ S ++A+T IVYIQ +LGW+VGFGVPA++M +AL FFLASPFY+K KA+ SLL G Q
Sbjct: 187 ALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASRSLLTGFVQ 246
Query: 243 VLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
VLV ++KNR+ P + T+ YH+ K S ++P++ LRFLNKAC+ + PE+D+ DG AS
Sbjct: 247 VLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERDINSDGLAS 306
Query: 303 NPNSLCTVE---------------------------------QASSMDRHVTPNFEIPSG 329
NP SLCTV+ QA+SMDRHV +F+IP+G
Sbjct: 307 NPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVFSSFQIPAG 366
Query: 330 SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 389
S+ +F ++ L +W+ LYDR +LPLASK++GK +L +K RMGIGL S M AIVE
Sbjct: 367 SYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGMVVAAIVEN 426
Query: 390 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIA 449
RR AI +G+ ++ + +V MSAMW +P L GLA AFN IGQTEFYY+E PKSMSSIA
Sbjct: 427 VRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEFPKSMSSIA 486
Query: 450 STLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509
+ L G G++ ANL+AS+I++AV+ +T RGG W+ +NINKGHYD YYWLL +S N L
Sbjct: 487 AALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLAIMSAINLL 546
Query: 510 YYLACCKAYGPFKGRVGTAFDDKDGMEEE 538
YYL C YGP + GT D+ +G+++E
Sbjct: 547 YYLVCSYFYGPCVEQ-GTK-DEVEGLKDE 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 539 | ||||||
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.569 | 0.505 | 0.445 | 4.4e-126 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.582 | 0.531 | 0.429 | 1.7e-122 | |
| TAIR|locus:2144281 | 481 | AT5G11570 [Arabidopsis thalian | 0.426 | 0.478 | 0.394 | 5.3e-87 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.567 | 0.536 | 0.314 | 5.2e-75 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.556 | 0.487 | 0.300 | 8.6e-73 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.564 | 0.515 | 0.299 | 6.1e-71 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.400 | 0.378 | 0.347 | 2.4e-70 | |
| TAIR|locus:2196734 | 555 | AT1G69860 [Arabidopsis thalian | 0.539 | 0.524 | 0.317 | 3.3e-69 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.593 | 0.555 | 0.294 | 4.2e-69 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.460 | 0.455 | 0.321 | 3.3e-64 |
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 138/310 (44%), Positives = 187/310 (60%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K KGG+ T+PFIIANEAFE++A+ G PNMI+YL R+Y TN++F+W+AA+NF
Sbjct: 19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG--CESATW 127
P++GA L+DSY+GR+ I + LGMVLLW T +LP KP CD G C S+T
Sbjct: 79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
SQL LY AF AFGA+QLD + K++ L+S+F WYY + + +
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
+A T IVYIQ++LGWK+GFGVPAV+M P YV SL GL Q +VA+
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258
Query: 248 FKNRRTKLPTQATE-EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+K R+ LP + Y+H K S PS+ LRFLNKAC+ + E+++ DG A NP
Sbjct: 259 YKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWR 318
Query: 307 LCTVEQASSM 316
LCT ++ +
Sbjct: 319 LCTTDKVEEL 328
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 136/317 (42%), Positives = 184/317 (58%)
Query: 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFI 61
+ +P+ + KGGL T+PFIIANE FE++A+ G NMILYL +Y + ++F+
Sbjct: 14 LQQPIT-RRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFM 72
Query: 62 WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRN- 120
W AATNF+P+VGA L+DSY+GR+ I + LLGMV+LW T +LP KP C
Sbjct: 73 WVAATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGT 132
Query: 121 GCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYV 180
C SAT SQL LY AF AFGA+QLD + K++ L+S+F WYY
Sbjct: 133 NCSSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYA 192
Query: 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGL 240
S + ++A T IVYIQD+LGWK+GFG+PA++M P YVK + SL GL
Sbjct: 193 SSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGL 252
Query: 241 TQVLVASFKNRRTKLPTQA-TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDG 299
QV+ A++ R LP + + Y+ K S PS+ LRFLNKAC + ++DL DG
Sbjct: 253 AQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDG 312
Query: 300 RASNPNSLCTVEQASSM 316
A N LCT +Q +
Sbjct: 313 LALNQWRLCTTDQVEKL 329
|
|
| TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 5.3e-87, Sum P(3) = 5.3e-87
Identities = 93/236 (39%), Positives = 135/236 (57%)
Query: 1 MITEPLLINKNP-KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII 59
M E LL+ + K G+ T+PFI+A++A E++A G PNMIL+L EY M T A NI+
Sbjct: 1 MDQEALLVGRTLLKRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANIL 60
Query: 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR 119
F+W+AATNF P+VGA +ADSY GR+ +IGFG L GMVLLW TTI+ P CD+L
Sbjct: 61 FLWSAATNFFPLVGAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTIIR----PECDKLT 116
Query: 120 NGCESATWSQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTK-SKGALQSYFSWY 178
N C+ T + + LY F AF A+QL ++ + +L++ F+WY
Sbjct: 117 NVCQPTTLLKSVLLYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWY 176
Query: 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANT 234
Y V + ++ + +V++Q GW++GFGV M P+YV+ + T
Sbjct: 177 YFSVMVACFLSQSLLVFVQTTYGWQIGFGVSVAAMALSVALFFAASPYYVRFQKPT 232
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 100/318 (31%), Positives = 152/318 (47%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
NK G + FI+ NE ER+A G N++ YL N A N + W+
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWS 128
P++GA +AD+Y+GRY I F + GM LL + +PG KP C+ + C + S
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA--DTCHPNS-S 137
Query: 129 QLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188
Q + A +FGA+Q D+ D + K S+F+W+Y ++ +++
Sbjct: 138 QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENE-KIKKSSFFNWFYFSINVGALI 196
Query: 189 AVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASF 248
A T +V+IQ N+GW GFGVP V M FY + S L + QV+VA+F
Sbjct: 197 AATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAF 256
Query: 249 KNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASN 303
+ K+P T + + KGS +L+ ++NL+F +KA A + D DG N
Sbjct: 257 RKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKA--AVESQSDSIKDGEV-N 313
Query: 304 PNSLCTVEQASSMDRHVT 321
P LC+V Q + +T
Sbjct: 314 PWRLCSVTQVEELKSIIT 331
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 92/306 (30%), Positives = 153/306 (50%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +PFII NE FE++ +G N+++YL +N+++ A II ++ NF V A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATWSQLMPL 133
L D+Y GRY+ + C LG ++ T +P P AC + C + Q+ L
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFL 165
Query: 134 YFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193
AFGA+Q + + +G + S+F+WY+ + + I+++T +
Sbjct: 166 LMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRG-IDSFFNWYFFTFTFAQILSLTLV 224
Query: 194 VYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRRT 253
VY+Q N+ W +G +PAV+M YVK KA+ S L G+ QV+ + K R
Sbjct: 225 VYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGL 284
Query: 254 KLPTQATEEMYHHGK---GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
K Q +Y++ + +L ++ RFL+KA + PE L PDG+ ++P LCT+
Sbjct: 285 KPAKQPWLNLYNYYPPKYANSKLKYTDQFRFLDKAAILT-PEDKLQPDGKPADPWKLCTM 343
Query: 311 EQASSM 316
+Q +
Sbjct: 344 QQVEEV 349
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 6.1e-71, Sum P(2) = 6.1e-71
Identities = 94/314 (29%), Positives = 144/314 (45%)
Query: 9 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNF 68
+K G + PFI+ NE ER+A G N+I Y E + +A + + IW
Sbjct: 49 SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108
Query: 69 LPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG-CESATW 127
P++GA++ADSY GRY I +GM LL + LP KP AC + C AT
Sbjct: 109 TPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATT 168
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
Q + +FGA+Q D D + + S+F+W+Y ++ S
Sbjct: 169 VQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTD-PRERVRKASFFNWFYFSINIGSF 227
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
++ T +V++Q+N+GW +GF +P V M P Y K S + + QVLVA+
Sbjct: 228 ISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAA 287
Query: 248 FKNRRTKLPTQA-----TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRAS 302
++ + LP T E GS ++ ++ +FL+KA + E + G S
Sbjct: 288 YRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYE---SKSGAFS 344
Query: 303 NPNSLCTVEQASSM 316
NP LCTV Q +
Sbjct: 345 NPWKLCTVTQVEEV 358
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 2.4e-70, Sum P(2) = 2.4e-70
Identities = 76/219 (34%), Positives = 113/219 (51%)
Query: 310 VEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLR 369
V Q +++D+H+ PNF+IPS S ++F L++ W +YD+ ++P A K G + R
Sbjct: 354 VLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQR 413
Query: 370 MGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 429
+GIGL+ S SM + I+E AR + + ++ + M+ WQ+P L G A F
Sbjct: 414 IGIGLVISIFSMVSAGILEVARLNYVQTHNLYNE--ETIPMTIFWQVPQYFLVGCAEVFT 471
Query: 430 MIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXXIMNAVDDITKRGGNGGWIPSNIN 489
IGQ EF+Y + P +M ++ V +T+ GG GWI N+N
Sbjct: 472 FIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLN 531
Query: 490 KGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 528
GH DY++WLL LS NFL YL K Y +K G A
Sbjct: 532 NGHLDYFFWLLAGLSFLNFLVYLWIAKWY-TYKKTTGHA 569
|
|
| TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 96/302 (31%), Positives = 158/302 (52%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA 74
G + +P+II NE ER+AT G N ++Y+ REY+M+ A +I W+A TNF PI+GA
Sbjct: 21 GWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPIIGA 80
Query: 75 LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMP 132
++DSY G++ I FG LLGM++L T+++P +PP C DQ+ C ++SQL
Sbjct: 81 FISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPCTADQITGQCIPYSYSQLYV 140
Query: 133 LYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
L F +Q D +G+ +S+FSWYY + +V++T
Sbjct: 141 LLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGS-RSFFSWYYTTHTIVQLVSMTL 199
Query: 193 IVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRR 252
++Y+Q+N+ W +GF +P V+ +YV K S+ G+ +VLVA++K R+
Sbjct: 200 VLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRK 259
Query: 253 TKLPTQAT--EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTV 310
+ + + + S +L+ ++ RFLNKA + + ++ + R CTV
Sbjct: 260 ARFTSGIDYHQPLLETDLQSNKLVLTDQFRFLNKAVIVMNNDEAGNEEWRT------CTV 313
Query: 311 EQ 312
Q
Sbjct: 314 RQ 315
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
Identities = 98/333 (29%), Positives = 168/333 (50%)
Query: 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVG 73
GG R + FI+ NE E++ ++G + N +LYL ++ME A N+ ++W TNF P++G
Sbjct: 16 GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLG 75
Query: 74 ALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLR-NGCESATWSQLMP 132
AL++D+Y+GR++ I + +LG++ + T LP PP C+ + C+ QL
Sbjct: 76 ALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGI 135
Query: 133 LYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
L+ FG +Q D+ KG + S+F+WYY+ ++ I + T
Sbjct: 136 LFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKG-VASFFNWYYLTLTMVLIFSHTV 194
Query: 193 IVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVASFKNRR 252
+VY+Q + W +GF +P +M FYV K S+ G+ +V+VA+ K R
Sbjct: 195 VVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRD 253
Query: 253 TK--LPTQATEEMYHHG--KGSMRLMP-SENLRFLNKACMAKHPEQDLTPDGRASNPNSL 307
K L TEE Y G + +P ++ +FL+KA + + DLT +G +N L
Sbjct: 254 LKISLVDDGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVIL--DGDLTSEGVPANKWRL 311
Query: 308 CTVEQASSMDRHVTPNFEIPSGSFNIFAILTLT 340
C++++ + + +P S I +I+ +T
Sbjct: 312 CSIQEVEEVKCLIRV---VPVWSAGIISIVAMT 341
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 82/255 (32%), Positives = 125/255 (49%)
Query: 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFL 69
K G + PFI ANE ER+A G N+I Y E + +A + W
Sbjct: 40 KQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYIT 99
Query: 70 PIVGALLADSYVGRYRMIGFGCFTCLL--GMVLLWSTTILPGAKPPACDQLRNGCESATW 127
P++GAL+AD+Y GRY I CF+ + GMV L + +PG KP C + + C AT
Sbjct: 100 PLIGALIADAYWGRYWTIA--CFSAIYFTGMVALTLSASVPGLKPAEC--IGSLCPPATM 155
Query: 128 SQLMPLYFAFXXXXXXXXXXXXXXXAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187
Q L+ +FGA+Q DK D ++ + S+F+W+Y ++ +
Sbjct: 156 VQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSE-RVRKASFFNWFYFTINIGAF 214
Query: 188 VAVTCIVYIQDNLGWKVGFGVPAVIMXXXXXXXXXXXPFYVKSKANTSLLPGLTQVLVAS 247
V+ T +V+IQ+N GW++GF +P V M P Y K S + + QVLVA+
Sbjct: 215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274
Query: 248 FKNRRTKLPTQATEE 262
++ K+P +T+E
Sbjct: 275 YRKSNLKVPEDSTDE 289
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M817 | PTR6_ARATH | No assigned EC number | 0.4788 | 0.9814 | 0.8714 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 539 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-43 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 8e-20 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-11 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 4e-08 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 5e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-04 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 5e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 111/399 (27%), Positives = 167/399 (41%), Gaps = 54/399 (13%)
Query: 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLG 143
++ I G +G VLL I P P Q+ Y L++LG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSP---------------VQVALFYIGLYLIALG 45
Query: 144 SGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWK 203
+GGI+ + AFGA+Q D+ +FSW+Y ++A S++A Y+Q N+G+
Sbjct: 46 TGGIKPNVSAFGADQFDETQ----DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 204 VGFGVPAVIMLLSALSFFLASPFYVK--SKANTSLLPGLTQVLVASFKNRRTKLPTQATE 261
+GFG+PAV MLL+ L F L S Y K + + ++ A+ KNR+ +LP +
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 262 EMYHHGKGSMRL------------MPSENLRFLNKACMAKHPE--QDLTPDGRA------ 301
+ K + R + +F Q +
Sbjct: 162 LYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAFWIL 221
Query: 302 ----SNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKI 357
+ V Q +MDR + P FEIP SF F L + I + + D V PL
Sbjct: 222 PDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLL--- 278
Query: 358 KGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 417
+ K L+L R G+G+ + AIVEA R A G++ V + +W LP
Sbjct: 279 RLKR-GLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGW-TVPLFILWSLP 336
Query: 418 YLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 456
L +SG+ +A G EF LP SM S+ + LS A
Sbjct: 337 ELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-20
Identities = 93/486 (19%), Positives = 154/486 (31%), Gaps = 92/486 (18%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY----NMETTAATNIIFIWTAATNFLPIV 72
R L I E +ER + G +ILYL + + T AT + + + PI+
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLM 131
G LAD +G R I G +G ++L S+ PG
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG--------------------- 119
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
LY L+ +G+G + + + E K D + G F+ +Y+ ++ S++A
Sbjct: 120 -LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-----FTLFYMGINIGSLIAPI 173
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV--------KSKANTSLLPGLTQV 243
+ N GW VGFG+ AV M++ + F L + LLP L +
Sbjct: 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGL 233
Query: 244 LVASFKNRRTKLPTQATEEMY------HHGKGSMRLMPSENLRFLNKACMAKH------- 290
+V T L Q T F + +
Sbjct: 234 VVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFA 293
Query: 291 ------PEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSG---SFNIFAILTLTI 341
EQ +SL A FE+P S N F I+ +
Sbjct: 294 VIFWALYEQ---------MGSSL--NLYADRNVNRQIFGFEVPPAWFQSLNPFFII---L 339
Query: 342 WIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGIS 401
+ + L K Q S ++ +GL+ + + I+ A G+
Sbjct: 340 FSPILAALWTKLGRGNK----QPSTPIKFALGLILAGLG---FLILLLAGIWFGGPSGL- 391
Query: 402 DDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN 461
+S W + VL F P ++ S + ++A
Sbjct: 392 --------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQ 443
Query: 462 LVASLI 467
+ +
Sbjct: 444 TLGGQV 449
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 40 MILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99
++LYL ATNI +T P++GAL+ADS++G+++ I + ++G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQL 159
L S +P P + L L++LG+GGI+ AFG +Q
Sbjct: 70 LA-SLGAVPSLGHP-------------LHDALSLVGLA-LIALGTGGIKPCVSAFGGDQF 114
Query: 160 DKGDGTKSKGALQSYFSWYYVFVSASSIVAVT-------CIVYIQDNLGWKVGFGVPAVI 212
++ +FS++Y ++A S+ + + + + FGVP ++
Sbjct: 115 EER----QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170
Query: 213 MLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251
M L+ + F + S Y K +++ + + +V + K R
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM--ETTAATNIIFIWTAATNFLPIV 72
L TL F+ E +ER + G + +YL ++ + A I ++A L V
Sbjct: 11 PLFTLFFV---ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67
Query: 73 GALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132
G D G + + G +LG +L A D +
Sbjct: 68 GWWFGDRVWGTKKTMVLGGIVLMLGHFML--------AMSIYPDLI-------------- 105
Query: 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192
++ G +++GSG +++ + + ++GD + G F+ +Y+ ++ S ++
Sbjct: 106 -FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG----FTLFYMSINIGSFISPLL 160
Query: 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224
I +N G+ VGF + AV M++ L+FF
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 35/237 (14%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALL 76
R + +++A + +E + G +ILYL + + A + + + PI+G L
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 77 ADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA 136
AD +G + G +G V+L ++ I P LY +
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF----------------------LYLS 106
Query: 137 FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196
++ G G +S+ E + D + G FS Y + SI+A Y
Sbjct: 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG-----FSLMYAAGNVGSIIAPIACGYA 161
Query: 197 QDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK--------ANTSLLPGLTQVLV 245
Q+ W +GFG+ AV M+ + F + + ++ A LLP +LV
Sbjct: 162 QEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 32/196 (16%)
Query: 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86
+ +P + L + + + A I+ ++ ++ L+D + GR R+
Sbjct: 9 FLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRV 66
Query: 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGG 146
+ G LG +LL + L L L+ LG G
Sbjct: 67 LLLGLLLFALGSLLLAFASSLWL-----------------------LLVGRFLLGLGGGA 103
Query: 147 IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206
+ ++ A AE + +++ + ++LGW+ F
Sbjct: 104 LYPAAAALIAEWF-------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 207 GVPAVIMLLSALSFFL 222
+ A++ LL AL
Sbjct: 157 LILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 31/219 (14%)
Query: 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90
+ P + LYL + + T ++ ++ + L+D + GR R++ G
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSS 150
LG++LL S L L L LG G + +
Sbjct: 69 LLLFALGLLLL-----------------------LFASSLWLLLVLRVLQGLGGGALFPA 105
Query: 151 SLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210
+ A A+ + + + + GW+ F + A
Sbjct: 106 AAALIADWFPPEE-------RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 211 VIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249
++ LL+A+ L P LV ++K
Sbjct: 159 ILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV 81
I + E +ER G M +YL ++ M + + ++A L +G L D +
Sbjct: 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL 85
Query: 82 GRYRMIGFGCFTCLLGMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLM 140
G R+I G +G L+ WS A +Y +
Sbjct: 86 GTKRVIMLGAIVLAIGYALVAWSG------------------HDAGI-----VYMGMATI 122
Query: 141 SLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200
++G+G +++ + + +K D + GA F+ YY+ ++ S ++ ++
Sbjct: 123 AVGNGLFKANPSSLLSTCYEKDD-PRLDGA----FTMYYMSINIGSFFSMLATPWLAAKY 177
Query: 201 GWKVGFGVPAVIMLLSALSFFL 222
GW V F + V ML++ ++F
Sbjct: 178 GWSVAFALSVVGMLITVVNFAF 199
|
Length = 500 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 30/192 (15%)
Query: 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90
G + LYL + A ++ ++ ++G LL+D R ++ G
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSS 150
LG++LL A L L A L+ G G +
Sbjct: 249 LLLAALGLLLL-----------------------ALAPSLALLLVALLLLGFGLGFAFPA 285
Query: 151 SLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210
L +E A + + F S + + D G+ F + A
Sbjct: 286 LLTLASELA-------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 211 VIMLLSALSFFL 222
+ LL+AL L
Sbjct: 339 ALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 539 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.9 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.9 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.89 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.88 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.88 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.87 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.87 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.87 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.87 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.87 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.87 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.85 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.84 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.84 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.83 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.82 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.82 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.79 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.79 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.79 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.79 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.75 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.73 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.72 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.7 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.68 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.66 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.66 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.65 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.65 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.61 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.57 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.56 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.54 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.5 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.49 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.48 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.44 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.43 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.36 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.33 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.33 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.31 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.31 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.27 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.27 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.26 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.24 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.23 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.23 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.2 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.19 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.19 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.17 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.16 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.16 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.15 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.14 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.11 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.11 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.1 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.1 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.1 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.06 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.06 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.04 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.03 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.03 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.02 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.01 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.01 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.0 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.94 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.92 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.88 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.85 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.78 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.75 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.74 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.74 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.72 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.71 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.66 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.55 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.55 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.51 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.5 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.5 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.49 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.46 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.42 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.41 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.37 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.36 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.36 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.28 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.2 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.2 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.14 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.09 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.09 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.08 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.05 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.02 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.9 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.85 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.76 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.76 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.74 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.62 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.6 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.6 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.57 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.48 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.45 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.41 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.37 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.23 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.23 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.81 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.75 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.45 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.44 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.42 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.38 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.29 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.29 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.27 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.04 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.81 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.65 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.54 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.4 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.85 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.57 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.94 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.22 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.83 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 91.5 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.38 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.18 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 86.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 85.81 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 82.31 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=373.41 Aligned_cols=500 Identities=39% Similarity=0.684 Sum_probs=426.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
..+.|+++.+++..+.+|++++|++..++..|+++++|.+..++....+.|.......++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCc--ccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccch
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPAC--DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 169 (539)
++..+|..++.++..+|...++.| ++-.+.|...+......++.++.+.++|.|+..|+..++.+|++++.++.++ .
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~-~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV-K 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-h
Confidence 999999999999998998888877 2224456667766778899999999999999999999999999996554333 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHh
Q 009231 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFK 249 (539)
Q Consensus 170 ~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (539)
.+.+.++|+|+..+.|..++-.+..++.++.+|.+.|.++.+...++.++++...+.++.+++.+++...+.+++..+.+
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~ 270 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAF 270 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999888989999999999999999
Q ss_pred hccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchh--------------------
Q 009231 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT-------------------- 309 (539)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 309 (539)
+++...+. +.+...+..+..+.....+.++++|++......+. .++....+|..|.
T Consensus 271 k~~~~~~~-~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 271 KRKAVVSL-DPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HHhccCCC-cchhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 88877664 21111111111222333567888888776543211 0111111122221
Q ss_pred -------Hh-------hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHH
Q 009231 310 -------VE-------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLL 375 (539)
Q Consensus 310 -------~~-------q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~ 375 (539)
.| |...+|+..+..+.+|++.++.+..+.+.+..|+++++..|+.+|..+++..++..+++.+|+.
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~ 426 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV 426 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence 11 7788999998779999999999999999999999999999999999986555789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHH
Q 009231 376 FSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 455 (539)
Q Consensus 376 l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~ 455 (539)
+..+++...+.++.+|++.... ...+..++|.+|++|+++++|++|.+..++.+|+.++++|++||+.+++++.+
T Consensus 427 ~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~ 501 (571)
T KOG1237|consen 427 LSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL 501 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence 9999999999999998888765 22334789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 009231 456 GLSAANLVASLIMNAVDDITKRGGNGGWIP-SNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKG 523 (539)
Q Consensus 456 ~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~ 523 (539)
..++|+.++..+..++...++. ..+|++ +++|.++++.+||+++....++...+....++++.+..
T Consensus 502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~ 568 (571)
T KOG1237|consen 502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD 568 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence 9999999999999998877754 458999 99999999999999999999999998888887765543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=318.69 Aligned_cols=443 Identities=18% Similarity=0.231 Sum_probs=324.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhcc----CChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN----METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~ 86 (539)
..-+|+|.+..++..|++||++|||+...+..|++.+++ ++.+++..+.+.|....++.+++|||++||++|+||+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 344578999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
+..|.++.++|.++++.++ ......++++.+++++|.|+++|+..++++|++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-- 151 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-- 151 (498)
T ss_pred HHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc--
Confidence 9999999999999999653 01355689999999999999999999999999999885
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecC--CCCCCh------h
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK--ANTSLL------P 238 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~------~ 238 (539)
+|..+++.+|.+.|+|+.++|.+.+++.+++||+..|.++++.+.++++.+++.++...... ++..+. .
T Consensus 152 ---rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 152 ---RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred ---ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999988877654322 111111 1
Q ss_pred hHHHHHHHHHhhc-cCCCCCCCchh-----------hhcc-CCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCc
Q 009231 239 GLTQVLVASFKNR-RTKLPTQATEE-----------MYHH-GKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN 305 (539)
Q Consensus 239 ~~~~~l~~~~~~~-~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (539)
....++....... ......+.... .+-. .....+.. +++.|.+...... .....+
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lf-----------l~~~iF 296 (498)
T COG3104 229 VLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLF-----------LFAVIF 296 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHH-----------HHHHHH
Confidence 1111111111110 00000000000 0000 00000000 0111100000000 011233
Q ss_pred cchhHh-------h-hhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHH
Q 009231 306 SLCTVE-------Q-ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFS 377 (539)
Q Consensus 306 ~~~~~~-------q-~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~ 377 (539)
|.+..| + ....++... ++++|++++|.+|++.++++.|+.+.+..|+.++. ++ ++...++..|++++
T Consensus 297 W~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~ 371 (498)
T COG3104 297 WALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILA 371 (498)
T ss_pred HHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHH
Confidence 333333 1 233455532 48899999999999999999999888777666553 33 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 009231 378 TASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL 457 (539)
Q Consensus 378 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~ 457 (539)
+.+++++........ ++....|.+|+++.++++++||.+.+|...+++++.+|+++.+.+||+|.+..
T Consensus 372 g~~fl~l~~~~~~~~------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~ 439 (498)
T COG3104 372 GLGFLILLLAGIWFG------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTV 439 (498)
T ss_pred HHHHHHHHHHHHhhc------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999999988742211 11256799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 458 SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 458 ~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
..|+.++..+.+.... +. +..+.......|+.+++...+.........++.
T Consensus 440 a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~ 490 (498)
T COG3104 440 AAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL 490 (498)
T ss_pred HHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999888763110 00 001112345678888877777766666655544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=316.01 Aligned_cols=441 Identities=12% Similarity=0.160 Sum_probs=307.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
.++|+|.++.++..+++||++||++.++++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999449999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
+++.+++++++++.+ ....++++|+++++|.|.+.|+..++++|++|+++ ++|
T Consensus 89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~ 141 (489)
T PRK10207 89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRL 141 (489)
T ss_pred HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhh
Confidence 999999999997651 12335688999999999999999999999999866 347
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeec--CCCCCChhhHHHHH-----
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLPGLTQVL----- 244 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l----- 244 (539)
+++++++|++.|+|..+||.++|++.++.|||+.|++.++..+++.+.+...++..++. ++++++. +..+.+
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~ 220 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLG 220 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHH
Confidence 88999999999999999999999999999999999998765555555555544333322 1222221 111110
Q ss_pred ----HHHHhhccCCCCCCCchh-------------hhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccc
Q 009231 245 ----VASFKNRRTKLPTQATEE-------------MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSL 307 (539)
Q Consensus 245 ----~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (539)
............ .... .+++.+.+ +. .+.+-+...... .....++.
T Consensus 221 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~f~~~~~~~~-~~---~r~r~~~~~~l~-----------~~~~~f~~ 283 (489)
T PRK10207 221 SVVMIFVCAWLMHNVE--VANLVLIVLSIVVTIIFFREAFKLD-KT---GRNKMFVAFVLM-----------LEAVVFYI 283 (489)
T ss_pred HHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhcCC-HH---HHHHHHHHHHHH-----------HHHHHHHH
Confidence 000000000000 0000 00000000 00 000000000000 00001112
Q ss_pred hhHh-------hhh-hccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHH
Q 009231 308 CTVE-------QAS-SMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTA 379 (539)
Q Consensus 308 ~~~~-------q~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i 379 (539)
+..| +.. ..++.. .++.+++++++.+|++.+++..|+.+ .+++|+.+|..+++...++.+|++++++
T Consensus 284 ~~~q~~~~l~l~~~~~~~~~~-~G~~i~~~~~~~~n~~~iii~~pl~~----~l~~rl~~r~~~~~~~~k~~~G~~l~~~ 358 (489)
T PRK10207 284 LYAQMPTSLNFFAINNVHHEI-LGFSINPVSFQALNPFWVVVASPILA----GIYTHLGSKGKDLSMPMKFTLGMFLCSL 358 (489)
T ss_pred HHHHcccHHHHHHHHhccccc-cceEECHHHHHhHhHHHHHHHHHHHH----HHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 2222 111 233333 25778889999999999999999854 4556665554347899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHH
Q 009231 380 SMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA 459 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i 459 (539)
+++.+........ +. ....+.+|+++.+++.++||.+.+|+.++++++.+|++++|.++|++++.+++
T Consensus 359 ~~~~~~~~~~~~~---------~~---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~i 426 (489)
T PRK10207 359 GFLTAAAAGMWFA---------DA---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAA 426 (489)
T ss_pred HHHHHHHHHHhhc---------CC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 9877654331100 00 02357888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009231 460 ANLVASLIMNAVDDITKRGGNGGWIPSNI-NKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 521 (539)
Q Consensus 460 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 521 (539)
|+.+|..+...... .. -..|+. .++++..+|..+++..++..++++...++.++.
T Consensus 427 g~~lg~~l~~~~~~-~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 427 AFLLGGYVATFTAV-PD------NITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHhcc-cc------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988765421 00 000110 113467788888888888777777767655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=307.40 Aligned_cols=431 Identities=15% Similarity=0.171 Sum_probs=304.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhh--ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
.+++|.++.++..+++||+++|++.++++.|++++ +|+|..+++++.+.+.++..++++++|+++||++||||+++++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45678888999999999999999999999999988 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
+++.+++.++++++. +.+.+.+++.+.++|.|...|+..++++|++|+++. ++
T Consensus 86 ~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PR 138 (475)
T ss_pred HHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----cc
Confidence 999999998888755 566788899999999999999999999999988653 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhh----HHH----
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPG----LTQ---- 242 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---- 242 (539)
|+++++++|++.|+|.++||.+++++.++.||++.|.+.++..+++.+.++..++.+++.++++++.++ ..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 888999999999999999999999999989999999998877666666655555444322211111110 000
Q ss_pred ---HHHHHHhhccCCCCCCCchh----------hh---ccCCCCcccCCCcc-hhhhhhhhhhcCCCCCCCCCCCCCCCc
Q 009231 243 ---VLVASFKNRRTKLPTQATEE----------MY---HHGKGSMRLMPSEN-LRFLNKACMAKHPEQDLTPDGRASNPN 305 (539)
Q Consensus 243 ---~l~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (539)
.+....+............. .+ +..++......+.+ .+++ ... .....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~l~-------------~~~~~~ 284 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYI-VLF-------------LEAVVF 284 (475)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHH-HHH-------------HHHHHH
Confidence 00000000000000000000 00 00000000000000 0000 000 000111
Q ss_pred cchhHh--------hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHH
Q 009231 306 SLCTVE--------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFS 377 (539)
Q Consensus 306 ~~~~~~--------q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~ 377 (539)
+..+.| +...++...+ ++++|+++++++|++.++++.|+.+.+ +.|+.+|...++...++.+|++++
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~~~~~k~~~G~~l~ 359 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDPTTPLKFTLGMLFC 359 (475)
T ss_pred HHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCCCcHHHHHHHHHHH
Confidence 222222 2233455442 578999999999999999999986643 334433211267777899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 009231 378 TASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGL 457 (539)
Q Consensus 378 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~ 457 (539)
++++..+++.. +.. ++..+.+.+|+++.+++.++||.+..|..++++++.+|+++||+++|++.+..
T Consensus 360 ~~~~~~~~~~~----~~~---------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 360 GASFLTFAASI----WFA---------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred HHHHHHHHHHH----hhc---------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999887652 000 01124689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 458 SAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 458 ~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
.+|+.+++.+.+...+.. ++..+|..+++..++..++.+...++.
T Consensus 427 ~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877543211 134567777777777767666666544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=295.24 Aligned_cols=400 Identities=16% Similarity=0.181 Sum_probs=283.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
..+|+|.++.++..+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||+++++.
T Consensus 4 ~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~ 83 (493)
T PRK15462 4 HASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA 83 (493)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999669999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++.+++.++++... .+...++++..+..+|.|...|+..++++|++|+++ ++|
T Consensus 84 il~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R 136 (493)
T PRK15462 84 LLMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRR 136 (493)
T ss_pred HHHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----ccc
Confidence 99999987776432 012334555666778889999999999999999865 348
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCC-CCCChh--hHHH------
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLP--GLTQ------ 242 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~------ 242 (539)
.++++++|...|+|+.++|.+++++.++.||++.|.+.++..+++.+.++..+++..+... ++++.+ +...
T Consensus 137 ~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (493)
T PRK15462 137 DGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWL 216 (493)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999887777777766665544433210 111111 1000
Q ss_pred -HHHH---HHhhccCCCCCCCchh---------h---hccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCcc
Q 009231 243 -VLVA---SFKNRRTKLPTQATEE---------M---YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306 (539)
Q Consensus 243 -~l~~---~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (539)
+... ........... .... . +-..+ +....++.|........ .....++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~er~r~~~~~~l~-----------~~~~~Fw 281 (493)
T PRK15462 217 LVLLVATPALITVLFWKEW-SVYALIVATIIGLGVLAKIYRK---AENQKQRKELGLIVTLT-----------FFSMLFW 281 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHhhHHHHHHHH-----------HHHHHHH
Confidence 0000 00000000000 0000 0 00000 00000000000000000 0011222
Q ss_pred chhHh--------hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHH
Q 009231 307 LCTVE--------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST 378 (539)
Q Consensus 307 ~~~~~--------q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~ 378 (539)
..+.| ...+.|+.+. ++++|+++++.+|++.++++.|+... ++.|+.+++.+++...++.+|+++++
T Consensus 282 ~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~----lw~~l~~~~~~~s~~~Kfa~g~~~~g 356 (493)
T PRK15462 282 AFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAW----VVKESVAGNRTVRIWGKFALGLGLMS 356 (493)
T ss_pred HHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHH----HHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 33333 2245677764 78999999999999999999998554 45555332223889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHH-H
Q 009231 379 ASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-L 457 (539)
Q Consensus 379 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~-~ 457 (539)
++++++...... . ..+ ...+++|++..++++++||.+..|...+++.+.+|++.||++||+|.+. .
T Consensus 357 ~~f~~l~~~~~~---~-~~~---------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~ 423 (493)
T PRK15462 357 AGFCILTLSARW---S-AMY---------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSG 423 (493)
T ss_pred HHHHHHHHHHhh---c-CCC---------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 999988765411 0 000 1368899999999999999999999999999999999999999999874 4
Q ss_pred HHHHHHHHHHHHHh
Q 009231 458 SAANLVASLIMNAV 471 (539)
Q Consensus 458 ~ig~~lg~~l~~~i 471 (539)
.+|+.++..+....
T Consensus 424 ~~~~~~~g~~~~~~ 437 (493)
T PRK15462 424 AIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHh
Confidence 68888887776543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=297.53 Aligned_cols=446 Identities=13% Similarity=0.194 Sum_probs=304.1
Q ss_pred cccccCCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccch
Q 009231 5 PLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY 84 (539)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk 84 (539)
|.++.+.. +++|.++.++..+++||+++|++..+++.|+++++|++.++++++.+.+....+...+++|+++||++|||
T Consensus 10 ~~~~~~~~-~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 10 ESVSLNAF-KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred CCCChhhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 34444444 34577899999999999999999999999999999999999999999888888888889999999944999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCC
Q 009231 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (539)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~ 164 (539)
++++.+.++++++..+++++. .+...+++++.++++|.|...|+..++++|++|+++
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~- 145 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD- 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-
Confidence 999999999999988888654 134556788999999999999999999999998755
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeec--CCCCCChh--hH
Q 009231 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS--KANTSLLP--GL 240 (539)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~--~~ 240 (539)
++|+++++++|++.|+|..+||.++|++.++.||++.|.+.++..+++.+.++...+..++. ++++++.+ ..
T Consensus 146 ----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
T PRK09584 146 ----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKL 221 (500)
T ss_pred ----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhH
Confidence 34667899999999999999999999999999999999998876666655544433332222 12111211 11
Q ss_pred H----HHHHHH-HhhccCCCCCCCchh-----------hhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCC
Q 009231 241 T----QVLVAS-FKNRRTKLPTQATEE-----------MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNP 304 (539)
Q Consensus 241 ~----~~l~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (539)
. ...... ........+. .... .+..... .....+..+.+...... .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~~i~ 287 (500)
T PRK09584 222 LLTIVGVVALIAIATWLLHNQE-IARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVAFILM-----------LEAII 287 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH-----------HHHHH
Confidence 0 000000 0000000000 0000 0000000 00000000000000000 00011
Q ss_pred ccchhHh-------hh-hhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHH
Q 009231 305 NSLCTVE-------QA-SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLF 376 (539)
Q Consensus 305 ~~~~~~~-------q~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l 376 (539)
++....| |. ...++.. .++.+++++++.+|++.++++.|+.+. +++|+.+| ++..+++.+|+++
T Consensus 288 f~~~~~q~~~~l~~~~~~~~~~~~-~g~~i~~~~~~s~n~i~iil~~p~~~~----~~~~l~~r---~~~~~~~~~G~~l 359 (500)
T PRK09584 288 FFVLYSQMPTSLNFFAIRNVEHSI-LGIAVEPEQYQALNPFWIMIGSPILAA----IYNKMGDR---LPMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHhccHHHHHHHHhccccc-cceEECHHHHHHHhHHHHHHHHHHHHH----HHHHhCcC---CCcHHHHHHHHHH
Confidence 1222222 11 2233333 257788999999999999999998654 46777766 7889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHH
Q 009231 377 STASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 456 (539)
Q Consensus 377 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~ 456 (539)
++++++.+...... . ++...++.+|+++.+++.++||++.+|...+++.+.+|+++||+++|++.+.
T Consensus 360 ~~l~f~~l~~~~~~----~---------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 360 CSGAFLVLPLGAKF----A---------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred HHHHHHHHHHHHHh----c---------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999998776510 0 1113467889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009231 457 LSAANLVASLIMNAVDDITKRGGNGGWIPSNI-NKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520 (539)
Q Consensus 457 ~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 520 (539)
..+|+.++..+....... ....+.. ..+.+...|..++.+.++..++.+...++.++
T Consensus 427 ~a~g~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 427 TAGAALIAGYVANLMAVP-------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHhccc-------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887543210 0000110 11236677888887777666666665655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-26 Score=248.37 Aligned_cols=328 Identities=20% Similarity=0.374 Sum_probs=244.0
Q ss_pred HHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 009231 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (539)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (539)
++|||+...+..|+.+.+|++.+++..+.+.+....++.++++|+++|+++||+|+++++.++..+|..++++++ .|..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999988765 2220
Q ss_pred CCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 009231 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (539)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~ 190 (539)
....+....+++.++.++|.|+.+|+..++.+|+++++++ ++|.++++++|+++|+|+.+++
T Consensus 80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 0011344577889999999999999999999999987553 4599999999999999999999
Q ss_pred HHhhhhccc-------ccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhh
Q 009231 191 TCIVYIQDN-------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (539)
Q Consensus 191 ~i~~~l~~~-------~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 263 (539)
.+.+++.+. .+|..+|.++++.+++++++++...+++++.++..++..+..+++..+.+++......+....+
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~~~~~~ 221 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEHWPLHW 221 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcccchhH
Confidence 999998743 3699999999999999999998888887766666666667777776666543322111000111
Q ss_pred hccCCCCcccC-CCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-------hhhhccCCCCCCeeecCcchhhhh
Q 009231 264 YHHGKGSMRLM-PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------QASSMDRHVTPNFEIPSGSFNIFA 335 (539)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------q~~~~~~~~~~~~~~~~~~~~~~~ 335 (539)
.+......... ..+..+.+.-.... .....++.+..| |+..++..++ ++.+++.+++.+|
T Consensus 222 ld~a~~~~~~~~V~evkrll~il~l~-----------i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n 289 (654)
T TIGR00926 222 LDYAKDKHDIRMIRSTKRLLRVLVLF-----------IPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVN 289 (654)
T ss_pred HHHhccccccchHHHHHHHHHHHHHH-----------HHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHH
Confidence 11000000000 00000100000000 001122222222 4555655553 5788999999999
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 336 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 392 (539)
Q Consensus 336 ~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~ 392 (539)
++.++++.|+++..+.|..+|.+.+ +++.+++.+|+++++++++++...+..++
T Consensus 290 ~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 290 PLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888888776554 78999999999999999999998887765
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=225.29 Aligned_cols=370 Identities=13% Similarity=0.121 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (539)
.+++...++.+++++.+.++++.|+++++|+|..+.|.+.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5566789999999999999999999999999999999999999999999999999999997 999999999999999998
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
++..++ +.+.+++.|+++|++.+...|+..+++.|.+|+ ++|++++++.+
T Consensus 92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLM 141 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 887655 677889999999999998899999999999998 44999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCC
Q 009231 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQA 259 (539)
Q Consensus 180 ~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (539)
...++|..+||.+++++. ..+|++.|++.+...++..++.....|+.+++ +.+++ ..+.+....+++.+
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~------ 210 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTP---VREGMTRVLRDKRF------ 210 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchh---hHHHHHHHHcCchH------
Confidence 999999999999999998 68999999998876665554433333321111 11111 11111111111100
Q ss_pred chhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh----hhhhccCCCCCCeeecCcchhhhh
Q 009231 260 TEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE----QASSMDRHVTPNFEIPSGSFNIFA 335 (539)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----q~~~~~~~~~~~~~~~~~~~~~~~ 335 (539)
...-.... .+.....+ ......... ..+.......
T Consensus 211 --------------------~~~~~~~~----------------~~~~~~~~~~~~~p~~~~~~~-----~~~~~~g~l~ 249 (400)
T PRK11646 211 --------------------VTYVLTLT----------------GYYMLAVQVMLMLPIMVNDIA-----GSPSAVKWMY 249 (400)
T ss_pred --------------------HHHHHHHH----------------HHHHHHHHHHHhhhhhHHhhc-----CCchHHHHHH
Confidence 00000000 00000000 000000000 0111111111
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHH
Q 009231 336 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ 415 (539)
Q Consensus 336 ~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 415 (539)
....+.... . ..+..++..+| .+.++.+..+..+.+++.+.+...+ +.+.+
T Consensus 250 ~~~~~~~~~-~---~~~~~~~~~~r---~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~ 300 (400)
T PRK11646 250 AIEACLSLT-L---LYPIARWSEKR---FRLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQQL 300 (400)
T ss_pred HHHHHHHHH-H---HHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHHHhh----------------------hHHHH
Confidence 111111111 1 11222222223 4445567777777887776665554 34444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhH
Q 009231 416 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 495 (539)
Q Consensus 416 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 495 (539)
....++.+++++...|...+++.+.+|+++||+++|++++..++|..+|+.+.+.+.+..+.- +....
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~------------~~~~~ 368 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL------------NQPEL 368 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc------------CCcch
Confidence 555567888999999999999999999999999999999999999999999999987664210 01234
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009231 496 YYWLLTALSMANFLYYLA 513 (539)
Q Consensus 496 ~f~~~~~~~~v~~~~~~~ 513 (539)
.|+..+.+.+++.+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 369 PWMMLGIIGLITLLALYW 386 (400)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=223.89 Aligned_cols=376 Identities=12% Similarity=0.011 Sum_probs=248.4
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
+|.+..+++..++..++.....+.++.|+++++|+|..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+++.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 45677777788999999999999999999999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++...+.++..... ....+...+++.|+++|+|.+...++..+++.|..|+++ |+++.
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-------r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH-------TGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-------hccch
Confidence 87776655431110 001145678899999999999999999999999998844 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (539)
++.....++|..+||.+++++.++.||+..+++.++..++..+.. ...+ ++++++++..+..+.+....+
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~------ 220 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRP---AVPPVKGERLPFRRVLGRVWP------ 220 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCC---CCCCCCccchhHHHHHHHHHH------
Confidence 999899999999999999999999999998887665544333222 1111 111111110011111100000
Q ss_pred CCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhh-ccCCCCCCeeecCcchhhh
Q 009231 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASS-MDRHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~ 334 (539)
....+.-.... +.......... .+... .........
T Consensus 221 ---------------------~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 257 (399)
T PRK05122 221 ---------------------YGMGLALASIG-----------------FGTIATFITLYYAARGW-----DGAALALTL 257 (399)
T ss_pred ---------------------HHHHHHHHHHH-----------------HHHHHHHHHHHHHHccc-----ccchHHHHH
Confidence 00000000000 00000000000 01100 000111111
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
..+..++. .+...++.+| .++++.+..+.++.+++.+.....+ +.+.
T Consensus 258 ~~~~~~~~--------~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 304 (399)
T PRK05122 258 FGVAFVGA--------RLLFGNLINR---LGGLRVAIVSLLVEILGLLLLWLAP----------------------SPWM 304 (399)
T ss_pred HHHHHHHH--------HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhc----------------------cHHH
Confidence 11111111 1222333333 4555677777777777776665543 4445
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchh
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD 494 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 494 (539)
..+..++.|++.+...|.......+..|++.||+++|+++....+|..+++.+.+.+.+.. ++.
T Consensus 305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~ 368 (399)
T PRK05122 305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----------------GYP 368 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------CHH
Confidence 5666788899998888888888888999999999999999999999999999988876533 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 009231 495 YYYWLLTALSMANFLYYLACCK 516 (539)
Q Consensus 495 ~~f~~~~~~~~v~~~~~~~~~~ 516 (539)
..|+..+++.+++++..+...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 369 SIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 7777777777777666554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=219.69 Aligned_cols=376 Identities=11% Similarity=0.049 Sum_probs=242.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH
Q 009231 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (539)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 93 (539)
++|..++.+....++.....|...+.+| .+.+++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 3455555555555555555554444444 56789999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
..++.+++++++ +.+.++++|+++|++.+...|...+++.|.+|+ ++|++
T Consensus 84 ~~~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~ 133 (390)
T PRK03545 84 FIASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQ 133 (390)
T ss_pred HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhh
Confidence 999999888876 788899999999999999899999999999998 44899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
++++.....++|..+||.+++.+.++.|||+.|++.++..++..+......|+.+++ ++++. +......+++..
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~ 207 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSL----KSLPLLFRRPAL 207 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchH----HHHHHHHhCcHH
Confidence 999999999999999999999999989999999998887665554443333322111 11111 111111111100
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhh
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 333 (539)
. ..+.-...... ..+.... ..........+ .+......
T Consensus 208 ~------------------------~~~~~~~~~~~-------------~~~~~~~-~~~~~l~~~~g----~s~~~~~~ 245 (390)
T PRK03545 208 V------------------------SLYLLTVVVVT-------------AHFTAYS-YIEPFVQQVAG----LSENFATL 245 (390)
T ss_pred H------------------------HHHHHHHHHHH-------------HHHHHHH-HHHHHHHHhcC----CCccHHHH
Confidence 0 00000000000 0000000 00000011111 11111111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
.... ..+.+........|+.+| .+++ .+..+..+..++........ .+.+
T Consensus 246 ~~~~-----~~~~~~~g~~~~g~l~dr---~~~~-~~~~~~~~~~~~~~~l~~~~---------------------~~~~ 295 (390)
T PRK03545 246 LLLL-----FGGAGIIGSVLFSRLGNR---HPSG-FLLIAIALLLVCLLLLLPAA---------------------NSEW 295 (390)
T ss_pred HHHH-----HHHHHHHHHHHHHHHhhc---cchh-HHHHHHHHHHHHHHHHHHHh---------------------chHH
Confidence 1111 111111222333444444 4433 34555555555544332222 1345
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcch
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 493 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 493 (539)
.+....++.|++.....+.....+.+..| +.||+++|+++...++|..+|+.+.|.+.+..+ +
T Consensus 296 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g----------------~ 358 (390)
T PRK03545 296 HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG----------------L 358 (390)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------h
Confidence 55566778888888777878888888877 588999999999999999999999998775442 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 009231 494 DYYYWLLTALSMANFLYYLACCK 516 (539)
Q Consensus 494 ~~~f~~~~~~~~v~~~~~~~~~~ 516 (539)
...|+..+.+.+++.+..+...+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 359 SSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc
Confidence 67788888888888777766554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=219.50 Aligned_cols=373 Identities=14% Similarity=0.040 Sum_probs=242.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.++.+.+..++..++.+...+.+|.|+++++|+|..+.|++.+.+.+...++.++.|+++||+ ||||++..+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 4556666677888888888889999999999999999999999999999999999999999997 999999999888776
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.+....+...+.. ...+.+.++++|+++|+|.+...|+..+++.|.+|++ +|+++++
T Consensus 94 ~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~a~~ 151 (392)
T PRK12382 94 AGLAYLLAAILPVS---------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK-------HSGKVMS 151 (392)
T ss_pred HHHHHHhhhccccc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-------ccchhhh
Confidence 65543332211110 0126778899999999999998898899999999884 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCC
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (539)
+.+.+.++|..+||.+++++.++.||++.+.+.....++.... ....|+ .+++++...+..+......+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~------- 220 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NGTVRK---VPAHAGERPSLWSVVGLIWK------- 220 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHhccC---CCCCcccCchHHHHHHHHHH-------
Confidence 9999999999999999999988899998776654433322221 111111 11111000011111100000
Q ss_pred CCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCc-chhhhh
Q 009231 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSG-SFNIFA 335 (539)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~-~~~~~~ 335 (539)
......-.... +............. .+ .+.. ......
T Consensus 221 --------------------~~~~~~l~~~~-----------------~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 258 (392)
T PRK12382 221 --------------------PGLGLALQGVG-----------------FAVIGTFVSLYFAS-KG----WAMAGFTLTAF 258 (392)
T ss_pred --------------------hHHHHHHHHHH-----------------HhHHHHHHHHHHHh-cC----CchhHHHHHHH
Confidence 00000000000 00000000001100 00 1111 111111
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHH
Q 009231 336 ILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ 415 (539)
Q Consensus 336 ~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 415 (539)
....++ ..+...++.+| .++++.+..+..+.+++++.....+ +.+..
T Consensus 259 ~~~~~~--------~~~~~g~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 305 (392)
T PRK12382 259 GGAFVL--------MRVLFGWMPDR---FGGVKVAIVSLLVETVGLLLLWLAP----------------------TAWVA 305 (392)
T ss_pred HHHHHH--------HHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHHHcc----------------------cHHHH
Confidence 111111 22233333333 4445567777777777776655443 34445
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhH
Q 009231 416 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 495 (539)
Q Consensus 416 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 495 (539)
.+..++.+++.+...|.......+..|+++||+++|+++....+|+.+|+.+.+.+.+..+ +..
T Consensus 306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g----------------~~~ 369 (392)
T PRK12382 306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG----------------YPS 369 (392)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------chH
Confidence 5567788899888888888888899999999999999999999999999999998776442 466
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009231 496 YYWLLTALSMANFLYYLAC 514 (539)
Q Consensus 496 ~f~~~~~~~~v~~~~~~~~ 514 (539)
.|.+.+++.+++.+..+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 370 VFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777777776665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=224.73 Aligned_cols=389 Identities=13% Similarity=0.045 Sum_probs=241.5
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
....++...++..++.......+|.+. ++++.++.+.|++.+.+.+...++.++.|+++||+ ||||++..+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG 95 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence 344445567777777766666777665 56788999999999999999999999999999997 9999999988888777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+++.....+ ..+.+.+++.|++.|++.+...++..+++.|.+|+ ++|+++.++
T Consensus 96 ~~~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 150 (417)
T PRK10489 96 FIGLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAI 150 (417)
T ss_pred HHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHH
Confidence 76655322111 11567788899999999988889999999999988 448999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeec-CCCCCChhhHHHHHHHHHhhccCCCC
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPGLTQVLVASFKNRRTKLP 256 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (539)
.+...++|..+||.+++++.+..+|++.|++.++..++..+..+.. |+.+++ ++++++..+..+.+....+++
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 224 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLRSLLAGFRFLLASP----- 224 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchHHHHHHHHHHHcCh-----
Confidence 9999999999999999999888899999988777666555444332 221111 111111111111111111100
Q ss_pred CCCchhhhccCCCCcccCCCcchhhh--hhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhh
Q 009231 257 TQATEEMYHHGKGSMRLMPSENLRFL--NKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 334 (539)
..+.. -....... .....|. ........+ .++.....+
T Consensus 225 ---------------------~~~~~~~~~~~~~~~---------~~~~~~~------p~~~~~~~g----~~~~~~g~~ 264 (417)
T PRK10489 225 ---------------------VVGGIALLGGLLTMA---------SAVRVLY------PALADEVWQ----MGAAQIGLL 264 (417)
T ss_pred ---------------------HHHHHHHHHHHHHHH---------HhHHHhh------HHHHHhccC----CChhHhHHH
Confidence 00000 00000000 0000000 000111011 112111111
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
... ..+...+ ...+.++..+| .+.++.+..+.++.+++++.+...+ +.+.
T Consensus 265 ~~~-~~~g~~i----g~~~~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~ 314 (417)
T PRK10489 265 YAA-VPLGAAL----GALTSGWLAHS---ARPGLLMLLSTLGSFLAVGLFGLMP----------------------MWIL 314 (417)
T ss_pred HHH-HHHHHHH----HHHHHHHhhhc---cCcchHHHHHHHHHHHHHHHHHccc----------------------hHHH
Confidence 111 1111111 12222333333 3444566677777777766554432 3444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchh
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD 494 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 494 (539)
.....++.|++.+...+...++..+..|++.||+++|+++...++|..+|+.+.|.+.+..+ ..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g----------------~~ 378 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT----------------PV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc----------------hh
Confidence 55566778888888888888899999999999999999999999999999999998876442 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 009231 495 YYYWLLTALSMANFLYYLACCKAYGPFKGRV 525 (539)
Q Consensus 495 ~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 525 (539)
..++..+++.++...+.+...+++++++++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455555555554444555555555544444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=220.98 Aligned_cols=374 Identities=13% Similarity=0.055 Sum_probs=239.7
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|..+..+++..++..+..-.+..-+|.. .+++|.+.++.+|+.+.+.++..++.++.|+++||+ |||++++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 4445555556666655555455555544 679999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++++++++++ +.+.++++|+++|+|.+...|...+.+.+.++++ ++|++++
T Consensus 83 ~~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~ 133 (495)
T PRK14995 83 LASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMAL 133 (495)
T ss_pred HHHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHH
Confidence 9999999876 7888999999999999999998888887877442 4599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhh-HHH-----HHHHHHh
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPG-LTQ-----VLVASFK 249 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~ 249 (539)
+++....++|..+||.+++++.++.|||+.|++..++.++..++.+...|+.+++++++.+... ... .+.....
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~ 213 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAK 213 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877776665555544443222211111111 000 0001111
Q ss_pred hccCCCCCCCch--------------hhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh----
Q 009231 250 NRRTKLPTQATE--------------EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE---- 311 (539)
Q Consensus 250 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 311 (539)
+....... ... ....+.+...+.. ..+.+ +.+.+......
T Consensus 214 ~~~~~~~~-~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~---~~~lf------------------~~~~~~~~~~~~~~~ 271 (495)
T PRK14995 214 TALKGFLS-LWVTSLTLLTGALLLGLFIRTQLAASRPMI---DMRLF------------------THRIILSGVVMAMTA 271 (495)
T ss_pred hccccCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---CHHHh------------------CCcccHHHHHHHHHH
Confidence 00000000 000 0000000000000 00000 00000000000
Q ss_pred ----------hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHH
Q 009231 312 ----------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASM 381 (539)
Q Consensus 312 ----------q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~ 381 (539)
....+....+ .++ ...........+...+..++..++.+| .++++.+..|+++.++++
T Consensus 272 ~~~~~~~~~~~~~~lq~v~g----~s~-----~~ag~~~~~~~~~~~~~~~~~g~l~~r---~g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 272 MITLVGFELLMAQELQFVHG----LSP-----LEAGMFMLPVMVASGFSGPIAGILVSR---LGLRLVATGGMALSALSF 339 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHH
Confidence 0001111111 111 111111111222222233334444444 555667788888888887
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHH
Q 009231 382 TAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAAN 461 (539)
Q Consensus 382 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~ 461 (539)
..+.... .+.+.+......++.|+|.+...++....+.+.+|++++|.+++++++.+++|+
T Consensus 340 ~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~ 400 (495)
T PRK14995 340 YGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA 400 (495)
T ss_pred HHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence 6655443 122344455667888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 009231 462 LVASLIMNAVDD 473 (539)
Q Consensus 462 ~lg~~l~~~i~~ 473 (539)
.+|+.+.+.+.+
T Consensus 401 ~~G~ai~g~i~~ 412 (495)
T PRK14995 401 GLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=217.87 Aligned_cols=391 Identities=9% Similarity=-0.004 Sum_probs=243.6
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
.|.++.+....++..+..+.+.+.+|.|. +++|+|..+.+++.+.+.++..++.+++|+++||+ ||||+++.++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 34567777788888888888888888876 47999999999999999999999999999999997 99999999999998
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.+++.++. +.+.++++|+++|+|.+...|...+++.|.+|+ ++|++++
T Consensus 87 ~~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 136 (471)
T PRK10504 87 LGSLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAM 136 (471)
T ss_pred HHHHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHH
Confidence 8888877655 677789999999999999999999999999988 5589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (539)
++.+...++|..+||.+++++.++.||++.|.+..+..++..+......++.+.++++.+....................
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 216 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDG 216 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999988776666655554444432222211111110000000000000000
Q ss_pred CCCCchhhhccCCCCcccCCCcchh-hhhhhh---hhcCCCCCCCCCCCCCCCccchhH----h----------hhhhcc
Q 009231 256 PTQATEEMYHHGKGSMRLMPSENLR-FLNKAC---MAKHPEQDLTPDGRASNPNSLCTV----E----------QASSMD 317 (539)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~----------q~~~~~ 317 (539)
.....+... ......... ...-.. .....++....+-.....+..... . ......
T Consensus 217 ---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (471)
T PRK10504 217 ---SKGLGLSPL----AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQ 289 (471)
T ss_pred ---CCcCCcchH----HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000000 000000 000000000000000011111100 0 011111
Q ss_pred CCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009231 318 RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAIN 397 (539)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~ 397 (539)
...+ .++.. .........+......++..|+.+| +++++.+..+..+.+++...+.+..
T Consensus 290 ~~~g----~~~~~-----~g~~~~~~~~~~~~~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (471)
T PRK10504 290 IGLG----FSPFH-----AGLMMIPMVLGSMGMKRIVVQVVNR---FGYRRVLVATTLGLALVSLLFMLVA--------- 348 (471)
T ss_pred HHcC----CCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHhcc---------
Confidence 1111 11111 1111111112222223444555555 6666778888887777766555432
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 398 EGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 398 ~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
.....+.+...+++.|++.+...+..+....+.+|++.+|+++|++++.+.+|..+|+.+.+.+.+..+
T Consensus 349 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 349 ----------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred ----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111233334456677889999999999999999999999999999999999999999999998876554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=217.81 Aligned_cols=387 Identities=14% Similarity=-0.005 Sum_probs=243.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
..+++|..+.......+++....+......| .+.+++|+|+++.+++.+...++..++.++.|+++||+ ||||++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~ 86 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVS 86 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHH
Confidence 4456666667776777788777776666665 44678999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
.++..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++
T Consensus 87 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~ 136 (406)
T PRK11551 87 VALFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RL 136 (406)
T ss_pred HHHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HH
Confidence 998888888777655 678889999999999999999999999999998 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhh
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (539)
|++++++.+...++|..+++.+++.+.+..+|++.|++.+...++.........|+.++.+++++...+..+......+.
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhh
Confidence 99999999999999999999999888888999999998776555444433333333211111100000000000000000
Q ss_pred ccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcc
Q 009231 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGS 330 (539)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 330 (539)
.+ . .....+...... . ..............+.. .+ .+...
T Consensus 217 ----------------~~----~---~~~~~~~~~~~~-~-----------~~~~~~~~~~~p~~~~~-~g----~s~~~ 256 (406)
T PRK11551 217 ----------------GR----A---TATLLLWISYFF-T-----------LIVLYFLLNWLPSLLVG-QG----LSRSQ 256 (406)
T ss_pred ----------------hh----h---hHHHHHHHHHHH-H-----------HHHHHHHHHHHHHHHHh-CC----CChhh
Confidence 00 0 000000000000 0 00000000000011110 11 11111
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 009231 331 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 410 (539)
Q Consensus 331 ~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 410 (539)
....... ..+...+...+...+.+| .++++.+..+.+..+++++.+...+
T Consensus 257 ~~~~~~~-~~~~~~~~~~~~g~l~dr-------~g~~~~~~~~~~~~~~~~~~~~~~~---------------------- 306 (406)
T PRK11551 257 AGLVQIA-FNIGGALGSLLIGALMDR-------LRPRRVVLLIYAGILASLAALAAAP---------------------- 306 (406)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHhcC----------------------
Confidence 1111111 111122222233444555 3444555555555555555444332
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 009231 411 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 490 (539)
Q Consensus 411 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 490 (539)
+.+.+....++.+++.....+...++..+..|++.||+++|+.+....+|..+|+.+.+.+.+..
T Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--------------- 371 (406)
T PRK11551 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--------------- 371 (406)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC---------------
Confidence 34444455566777777778888889999999999999999999999999999999998876432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 009231 491 GHYDYYYWLLTALSMANFLYYLAC 514 (539)
Q Consensus 491 ~~~~~~f~~~~~~~~v~~~~~~~~ 514 (539)
+.+...++..+.+.+++.+..+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 123455666555566555555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=211.97 Aligned_cols=354 Identities=11% Similarity=0.064 Sum_probs=235.2
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
.|+.+.++...++...+++.+.++++.|+++++|+|..++|++.+.+.++..+..++.|+++||+ |||+++.++.+...
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence 46677778889999999999999999999999999999999999999999999999999999997 99999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.++..+++ +.+.+++.+.+.+.+.+...|...++..|.+|+ ++|++++
T Consensus 85 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 134 (395)
T PRK10054 85 SGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTKIF 134 (395)
T ss_pred HHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHHHH
Confidence 8888887766 566777778888888777788889999999988 4499999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKL 255 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (539)
++.+...++|.++||.+++++.+ .+|+.+|++.++..++..+......++.+++++++++ +..+ .....++
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~----- 205 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--SVWS-PSVLLQD----- 205 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--hhhh-hhhhccC-----
Confidence 99999999999999999998875 7999999988877666544433322222111111000 0000 0000000
Q ss_pred CCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhcc-CCCCCCeeecCcchhhh
Q 009231 256 PTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMD-RHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~-~~~~~~~~~~~~~~~~~ 334 (539)
..+.+......... .....+.... +..... ... ..+......+
T Consensus 206 ---------------------~~~~~~~~~~~l~~---------~~~~~~~~~~--~~~~~~~~~~----~~~~~~~g~~ 249 (395)
T PRK10054 206 ---------------------KALLWFTCSGFLAS---------FVSGAFASCI--SQYVMVVADS----DFAEKVVAVV 249 (395)
T ss_pred ---------------------ceehHHHHHHHHHH---------HHHHHhhhhH--HHHHHHhccc----chHHHHHHHH
Confidence 00000000000000 0000000000 000000 000 0111111111
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
.. ...+......+..+|+.+| .+++..+..++.+.++++....... .+.+.
T Consensus 250 ~~-----~~~~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~ 300 (395)
T PRK10054 250 LP-----VNAAMVVSLQYSVGRRLNA---ANIRPLMTAGTLCFVIGLVGFIFSG---------------------NSLLL 300 (395)
T ss_pred HH-----hhhhheeeehhHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHcc---------------------hHHHH
Confidence 11 1111111122334444444 5666778888888888776655432 13444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 475 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~ 475 (539)
+.+..++.++|++...|..++.+.+.+|+++||++.+..+ ...+|..+||.+.+.+.+..
T Consensus 301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 4556788999999999999999999999999999999766 56689999999999988655
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=206.09 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=158.4
Q ss_pred CcccccccCCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 009231 2 ITEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV 81 (539)
Q Consensus 2 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~ 81 (539)
|.||-.+.+..|..|+.........++.....|.....++.+ .+++|+++++.++..+.+.++..++.++.|+++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~- 82 (394)
T PRK10213 5 IAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT- 82 (394)
T ss_pred ccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 345554445667778776666666566666666666677664 679999999999999999999999999999999997
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCC
Q 009231 82 GRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDK 161 (539)
Q Consensus 82 Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~ 161 (539)
||||+++.+.++.+++.++++++. +++.+++.|+++|++.+...|...+++.|.+|+
T Consensus 83 grr~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 139 (394)
T PRK10213 83 DRRYVVILFAVLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP 139 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH
Confidence 999999999999999988888765 788899999999999999999999999999988
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 162 GDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 162 ~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
++|+++.++.....++|..+||.+++++.++.||++.|++.++..++..+...
T Consensus 140 -------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 140 -------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999999999988776555444333
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-22 Score=206.06 Aligned_cols=384 Identities=12% Similarity=0.074 Sum_probs=248.0
Q ss_pred CCCcch-hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhH-----HHHHHHHHHHHHHhhHHHHHHHHHhhccchHH
Q 009231 13 KGGLRT-LPFIIANEAFERMATVGFTPNMILYLCREYNMETTA-----ATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (539)
Q Consensus 13 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~-----~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~ 86 (539)
+.+|++ ........++..++++...++++.|++ ++|++..+ .+++.+...+...++.++.|+++||+ |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~ 86 (408)
T PRK09874 9 PINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIM 86 (408)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHH
Confidence 444554 455556788888898888999999975 68988655 48888999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
+..+.+...++..++..+. +.+.+++.|++.|++.+ ..+...+++.|.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~----- 137 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR----- 137 (408)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-----
Confidence 9999998888888877655 67788999999999865 467778888999988
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHH
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (539)
++|+++.++.+...++|..++|.+++.+.++.+|++.|++.+...++..+..+...++.+++++++++ .+..+.. .
T Consensus 138 --~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 213 (408)
T PRK09874 138 --NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LHMREVV-T 213 (408)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hHHHHHH-H
Confidence 44899999999999999999999999998889999999998877666555444333322111111100 0000000 0
Q ss_pred HHhhccCCCCCCCchhhhccCCCCcccCCCcchh-hhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCee
Q 009231 247 SFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLR-FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFE 325 (539)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 325 (539)
..+++ .... ..-..... . ..................+
T Consensus 214 ~~~~~-------------------------~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~---- 251 (408)
T PRK09874 214 SLKNP-------------------------KLVLSLFVTTLII-Q------------VATGSIAPILTLYVRELAG---- 251 (408)
T ss_pred hCcCC-------------------------chHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHhc----
Confidence 00000 0000 00000000 0 0000000000000000000
Q ss_pred ecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 009231 326 IPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 405 (539)
Q Consensus 326 ~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 405 (539)
........... +.....+...+..+..+++.+| .++++.+..+..+.+++.+.....+
T Consensus 252 -~~~~~~~~~g~-~~~~~~l~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~----------------- 309 (408)
T PRK09874 252 -NVSNIAFISGM-IASVPGVAALLSAPRLGKLGDR---IGPEKILITALIFSVLLLIPMSFVQ----------------- 309 (408)
T ss_pred -cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHhc-----------------
Confidence 00000000000 0001111222233444455555 5666677777777766665554443
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 009231 406 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIP 485 (539)
Q Consensus 406 ~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~ 485 (539)
+.+.+....++.|++.+...|...+.+.+..|++.+|+.+++++....+|..+|+.+.+.+.+..
T Consensus 310 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---------- 374 (408)
T PRK09874 310 -----TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---------- 374 (408)
T ss_pred -----cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc----------
Confidence 34555566678899999999999999999999999999999999999999999999998876433
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 486 SNINKGHYDYYYWLLTALSMANFLYYLACCK 516 (539)
Q Consensus 486 ~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 516 (539)
++...|++.+++.+++.+..+...+
T Consensus 375 ------g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 375 ------GFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2567788888888887776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=195.92 Aligned_cols=382 Identities=16% Similarity=0.096 Sum_probs=258.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
.+..|..++.+.+..|.-..+-|.....+|.- .+++|.|..++|+.++.|.++..++.|+-..+.||+ .||++++..+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 35556777777788888888888777777754 789999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
.++.++.++++++. |++.++++|++.|+..|.+++...+..++..|+++ |
T Consensus 86 ~lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~-------~ 135 (394)
T COG2814 86 ALFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK-------R 135 (394)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------h
Confidence 99999999999988 89999999999999999999999999999999955 8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhc
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNR 251 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (539)
+++.++...+..++..+|..++.++.+.+|||..|+..+.+.++..+..+...|+...+++.+.+..+..+.+ +++
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l----~~p 211 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLL----RRP 211 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHh----cCc
Confidence 9999999999999999999999999999999999999999888888887777771111111222222222222 111
Q ss_pred cCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcch
Q 009231 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSF 331 (539)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 331 (539)
... ..+-.........+ ....|..-..++..+.+... ....
T Consensus 212 ~v~-------------------------~~l~~t~l~~~g~F-------~~ftYi~P~L~~v~g~s~~~-------vs~~ 252 (394)
T COG2814 212 GVL-------------------------LGLLATFLFMTGHF-------ALYTYIRPFLESVAGFSVSA-------VSLV 252 (394)
T ss_pred hHH-------------------------HHHHHHHHHHcchh-------hhHHhHHHHHHHccCCCHhH-------HHHH
Confidence 000 00000000000000 00000000000111111000 0011
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccch
Q 009231 332 NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMS 411 (539)
Q Consensus 332 ~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 411 (539)
.....+..++.. .+.+|..+| +.++.+.....++++.++.+.+.. .+
T Consensus 253 Ll~~Gv~~~~Gn--------~~gGrl~dr----~~~~~l~~~~~l~a~~~l~l~~~~---------------------~~ 299 (394)
T COG2814 253 LLAFGIAGFIGN--------LLGGRLADR----GPRRALIAALLLLALALLALTFTG---------------------AS 299 (394)
T ss_pred HHHHHHHHHHHH--------HHHhhhccc----cchhHHHHHHHHHHHHHHHHHHhc---------------------ch
Confidence 111122122222 223343332 344566666777777777766654 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 009231 412 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKG 491 (539)
Q Consensus 412 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~ 491 (539)
.+..+...++.+++........+....+.+ ++.++.+++++....++|..+|..+.+.+.+..+
T Consensus 300 ~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g--------------- 363 (394)
T COG2814 300 PALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALG--------------- 363 (394)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------
Confidence 444444444455555444444444444433 4679999999999999999999999999886542
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 492 HYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 492 ~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
+....+.-+.+.++++.+.+...+++
T Consensus 364 -~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 364 -YAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677777777777777666655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=213.24 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=127.1
Q ss_pred HHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCC
Q 009231 42 LYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNG 121 (539)
Q Consensus 42 ~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 121 (539)
..+.+++|++.++.+++.+.+.+...++.+++|+++||+ |||++++.++++..++.+++++++
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 345679999999999999999999999999999999997 999999999999999988888766
Q ss_pred CCCCCccchHHHHH-HHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009231 122 CESATWSQLMPLYF-AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL 200 (539)
Q Consensus 122 ~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~ 200 (539)
+.+.+++ .|++.|++.+...+...+++.+.+++ +|+++.++.+.+.++|..++|.+++++.+..
T Consensus 106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR--------RRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh--------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 5565654 46888999988767777888888842 3899999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhc
Q 009231 201 GWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 201 g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
|||+.|++.++..+++.+..++.
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988776555444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=204.32 Aligned_cols=164 Identities=16% Similarity=0.039 Sum_probs=128.4
Q ss_pred HHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCC
Q 009231 30 RMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPG 109 (539)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~ 109 (539)
+..++...+.+| .+++++|+|..+.|++.+.+.+++.+++++.|+++||+ |||+++..++.....+.. ...+.
T Consensus 4 ~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---- 76 (368)
T TIGR00903 4 QAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---- 76 (368)
T ss_pred hHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh----
Confidence 334444444555 55779999999999999999999999999999999997 999987766555544432 22221
Q ss_pred CCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 009231 110 AKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189 (539)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g 189 (539)
.++..+++.|+++|+|.+.. ++..+.++|.+|+ ++|+++.++.+.+.++|..++
T Consensus 77 ------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~ 130 (368)
T TIGR00903 77 ------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFA 130 (368)
T ss_pred ------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 16788999999999999864 5556667999998 459999999999999999999
Q ss_pred HHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 190 ~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
+.+++++.++.|||+.|++.++..++..++.+...|+
T Consensus 131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999777666555544444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=201.55 Aligned_cols=364 Identities=14% Similarity=0.094 Sum_probs=225.7
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF-GCFTCLLGMVLLW 102 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~-~~~~~~~~~~l~~ 102 (539)
+..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+..++.|+++||+ ||||.++. +.+...++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999999999999999999999999999999997 99987654 5555556666666
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
.++ +++.+++.|.+++.+.+...|...++..|..|+++ +.+....+..+...
T Consensus 83 ~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 134 (375)
T TIGR00899 83 WNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-----REAVMFSSVMRAQI 134 (375)
T ss_pred hcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-----hhhHHHHHHHHHHH
Confidence 554 67778888888888888888888888888876533 11223367777788
Q ss_pred HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchh
Q 009231 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEE 262 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (539)
++|..+||.+++++.++.+||+.|++.++..++..+..+...|+.++++++++...+..+ ..+
T Consensus 135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------- 197 (375)
T TIGR00899 135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRG----LLA------------- 197 (375)
T ss_pred hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhh----hhc-------------
Confidence 999999999999999989999999998887666555544433432221111100000000 000
Q ss_pred hhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhh---hhhccCCCCCCeeecCcchhhhhHHHH
Q 009231 263 MYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQ---ASSMDRHVTPNFEIPSGSFNIFAILTL 339 (539)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q---~~~~~~~~~~~~~~~~~~~~~~~~~~i 339 (539)
+...+.+-.... ..+......+ ........+ .++...........
T Consensus 198 -------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~ 245 (375)
T TIGR00899 198 -------------SRDTRLLFVACT---------------LMWGCNILYIINMPLLIIHELG----LPDKLAGLMMGTAA 245 (375)
T ss_pred -------------CcchHHHHHHHH---------------HHHHHHHHHHhhhHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 000010000000 0000000000 000000011 11111111111111
Q ss_pred HHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHH
Q 009231 340 TIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYL 419 (539)
Q Consensus 340 i~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 419 (539)
. ...........+.+| .++++.+.++.++..+.+......+ +.+.+....
T Consensus 246 ~-~~~~~~~~~g~l~~r-------~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 295 (375)
T TIGR00899 246 G-LEIPFMLLAGYLIKR-------FGKRRLMLLAALAGVAFYTGLAADN----------------------SLWALLMLQ 295 (375)
T ss_pred H-HHHHHHHhHHHHHHH-------hcchhHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH
Confidence 1 111111122334444 4444556666655555444333332 344455556
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHH
Q 009231 420 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 499 (539)
Q Consensus 420 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 499 (539)
++.+++.+...+..+.+..+..|++ +++++|+++...++|..+++.+.+.+.+..+ +...|+.
T Consensus 296 ~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g----------------~~~~~~~ 358 (375)
T TIGR00899 296 LLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS----------------YHAVYWF 358 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------chhHHHH
Confidence 6778888888888888888888865 6799999999999999999999998765432 4566777
Q ss_pred HHHHHHHHHHHHH
Q 009231 500 LTALSMANFLYYL 512 (539)
Q Consensus 500 ~~~~~~v~~~~~~ 512 (539)
.+++.+++.+...
T Consensus 359 ~~~~~~~~~~~~~ 371 (375)
T TIGR00899 359 AIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=206.23 Aligned_cols=357 Identities=15% Similarity=0.084 Sum_probs=224.2
Q ss_pred chhHHHHHHHHHHH---HHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH
Q 009231 17 RTLPFIIANEAFER---MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (539)
Q Consensus 17 ~~~~~~~~~~~~~~---~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 93 (539)
+..++.++..+.+. ++.....+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||+++.+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 87 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAF 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 34444444444443 344445555554 4578999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
..++..++..+. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|.+
T Consensus 88 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~ 137 (406)
T PRK15402 88 FILTCLAILLAQ-----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIK 137 (406)
T ss_pred HHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHH
Confidence 998888887765 677788999999999998888889999999988 44788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
..++.+....+|..+||.+++++.++.+|++.|++.++..++..+..+...|+.+++++++.+..+..+.+....+++.
T Consensus 138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (406)
T PRK15402 138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRR- 216 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcH-
Confidence 8888888888999999999999988899999999888776665554443333322111111111111111111111100
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhh
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 333 (539)
........... ...................+ .++.....
T Consensus 217 -------------------------~~~~~~~~~~~------------~~~~~~~~~~~p~~~~~~~g----~~~~~~g~ 255 (406)
T PRK15402 217 -------------------------FVAGALALGLV------------SLPLLAWIALSPVILISGEQ----LSSYEYGL 255 (406)
T ss_pred -------------------------HHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHhC----CCHHHHHH
Confidence 00000000000 00000000000000000111 11111111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
.. ....+. ..+..++..++.+| .+.++.+.++.++.+++.+....... ....+.+
T Consensus 256 ~~-~~~~~~----~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~~ 310 (406)
T PRK15402 256 LQ-VPVFGA----LIAGNLTLARLTSR---RPLRSLIRMGLWPMVAGLLLAALATV-----------------ISSHAYL 310 (406)
T ss_pred HH-HHHHHH----HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHH-----------------cccccHH
Confidence 10 001111 11122334455445 66667788888888877776655420 0112455
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
+++...++.++|++...+..+..... .++++||++++++++.+.++..+|+.+.+.+.+
T Consensus 311 ~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 311 WLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66777888999999888877776644 445899999999999999999999999877653
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=203.93 Aligned_cols=369 Identities=9% Similarity=0.022 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 009231 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (539)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (539)
.++.....+..++.+.+.+|. +++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..++.+++++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 333444455555666666665 5689999999999999999999999999999999997 99999999999999999999
Q ss_pred HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHH
Q 009231 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (539)
++++ +.+.++++|+++|+|.+...+...+++.+.+| ++ |+++.+.+..+
T Consensus 92 ~~a~-----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~-------~~~~~g~~~~~ 140 (393)
T PRK09705 92 ELYP-----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR-------TPLVMGLWSAA 140 (393)
T ss_pred HHCc-----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc-------chhHHHHHHHH
Confidence 9877 67779999999999999999999999999886 23 78999999999
Q ss_pred HHHHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCc
Q 009231 182 VSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (539)
Q Consensus 182 ~~lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (539)
.++|..+|+.+++++.++. +||..+.+.+...++.....+...++.+++++++ + .. ..
T Consensus 141 ~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~------------~~------- 199 (393)
T PRK09705 141 LMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT-T-TT------------PV------- 199 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC-C-cC------------Cc-------
Confidence 9999999999999988875 8999877655544443333332222111111000 0 00 00
Q ss_pred hhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHH
Q 009231 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLT 340 (539)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii 340 (539)
+... +...+.-....... ...+............. .+ .+.......... ..
T Consensus 200 -----------~~l~-~~~~~~l~~~~~~~-----------~~~~~~~~~~lp~~l~~-~g----~s~~~ag~~~~~-~~ 250 (393)
T PRK09705 200 -----------RVVF-TPRAWTLGVYFGLI-----------NGGYASLIAWLPAFYIE-IG----ASAQYSGSLLAL-MT 250 (393)
T ss_pred -----------cccc-CHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-cC----CChhhhhHHHHH-HH
Confidence 0000 00000000000000 00000000000000110 11 111111111111 11
Q ss_pred HHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHH
Q 009231 341 IWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLV 420 (539)
Q Consensus 341 ~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 420 (539)
+...+ ......+..+| .++++.+.+++.+.+++........ . +...+ ..+
T Consensus 251 i~~i~----g~~~~g~l~~r---~~~~~~~~~~~~l~~~~~~~~~~~~-------------------~--~~~~~--~~~ 300 (393)
T PRK09705 251 LGQAA----GALLMPAMARH---QDRRKLLMLALVLQLVGFCGFIWLP-------------------L--QLPVL--WAM 300 (393)
T ss_pred HHHHH----HHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHHHcc-------------------c--hHHHH--HHH
Confidence 11122 22223444444 5556677777777777766544332 0 11111 234
Q ss_pred HHHHHHHHHhhhhhhhhhccC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHH
Q 009231 421 LSGLAMAFNMIGQTEFYYTEL-PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 499 (539)
Q Consensus 421 l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 499 (539)
+.+++.+...|.......+.. |++.+|+.+|+.+....++..+++.+.+.+.+..+ ++...|.+
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------------~~~~~~~~ 365 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------------NYLMDWAF 365 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchHHHHH
Confidence 557777777777776666766 47899999999999999999999999999887653 34566777
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 009231 500 LTALSMANFLYYLACCKAY 518 (539)
Q Consensus 500 ~~~~~~v~~~~~~~~~~~~ 518 (539)
.++++++.....+...+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 366 HALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 6666666666655555444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=205.00 Aligned_cols=354 Identities=13% Similarity=0.012 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 009231 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLL 101 (539)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~ 101 (539)
++...++..++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.++..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 344667777777777788888765 6899999999999999999999999999999997 99999999999888887777
Q ss_pred HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHH
Q 009231 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (539)
......+ ..+.+.++++|+++|++.+...|+..+++.|.+|+ ++|++++++.+..
T Consensus 82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 136 (365)
T TIGR00900 82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAV 136 (365)
T ss_pred HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHH
Confidence 6654111 12678889999999999999999999999999998 4599999999999
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCCh----hhHHHHHHHHHhhccCCCCC
Q 009231 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL----PGLTQVLVASFKNRRTKLPT 257 (539)
Q Consensus 182 ~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~ 257 (539)
.++|..+||.+++++.++.+|++.|++.++..+++.+..+...++.++++++++.. .+..+.+....++
T Consensus 137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (365)
T TIGR00900 137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKN------- 209 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcC-------
Confidence 99999999999999999899999999887766555544433322211111111000 0000000000000
Q ss_pred CCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchh-HhhhhhccCCCCCCeeecCcchhhhhH
Q 009231 258 QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT-VEQASSMDRHVTPNFEIPSGSFNIFAI 336 (539)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~~~~~~~~~~~~~ 336 (539)
......-....... ..+.... ...........+ .+......+..
T Consensus 210 -------------------~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 254 (365)
T TIGR00900 210 -------------------PLLRTLLLLALLFN------------LVFAPAIVALFPYVQSKYLG----RGSTHYGWVLA 254 (365)
T ss_pred -------------------cHHHHHHHHHHHHH------------HHHHHHHHHHhHHHHHHHhC----CchHHHHHHHH
Confidence 00000000000000 0000000 000000000010 11211111111
Q ss_pred HHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHH
Q 009231 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 416 (539)
Q Consensus 337 ~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 416 (539)
.. .+...+...+..+..+| .+++..+..+..+.+++.....+.. + +.+.+.
T Consensus 255 ~~-----~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~ 305 (365)
T TIGR00900 255 AF-----GLGALLGALLLGLLGRY---FKRMALMTGAIFVIGLAILVVGLTP--------------------P-NFPLFL 305 (365)
T ss_pred HH-----HHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHhhc--------------------h-hHHHHH
Confidence 11 11111122223333344 5555666667767777666655543 1 255566
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 417 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 417 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
...++.+++.+...+...++..+.+|++.||+++|+++...+++..+++.+.+.+.+
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999999999999887764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=213.67 Aligned_cols=384 Identities=12% Similarity=0.080 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
.++...++..+....+...+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHH
Confidence 334455555555544444444 55779999999999999999999999999999999997 9999999999999999998
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
++.+. +...++++|+++|++.+...|...+++.|.+|+ ++|++++++++.
T Consensus 84 ~~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~ 133 (485)
T TIGR00711 84 CGVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWGL 133 (485)
T ss_pred HhCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 88765 778899999999999999999999999999998 559999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhH-HH-----HHHHHHhhccCC
Q 009231 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGL-TQ-----VLVASFKNRRTK 254 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~l~~~~~~~~~~ 254 (539)
...+|..+||.+++++.++.+|++.|++.+...++..++.+...|+.++++.++.+.... .. .+.....+....
T Consensus 134 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~ 213 (485)
T TIGR00711 134 TVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPER 213 (485)
T ss_pred HHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999988776665555444434322111111111100 00 000000000000
Q ss_pred CCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCC-CCCCccchhH---h----------hhhhccCCC
Q 009231 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGR-ASNPNSLCTV---E----------QASSMDRHV 320 (539)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~----------q~~~~~~~~ 320 (539)
... +........ .........+... .....++..+.+.. .+..+..+.. . .........
T Consensus 214 ~~~-~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 286 (485)
T TIGR00711 214 GWF-DSNEILILS----ITGLVAIIAFVVW--ELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVL 286 (485)
T ss_pred CCC-CchHHHHHH----HHHHHHHHHHHHH--HHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 000000000 0000000000000 00000000000000 0001000000 0 001111111
Q ss_pred CCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 009231 321 TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGI 400 (539)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~ 400 (539)
+ .++.... .......+...+..++..++.+| .++++.+.+|..+.+++...+....
T Consensus 287 g----~s~~~~g-----~~~~~~~~~~~~~~~~~g~l~~r---~~~~~~~~~g~~~~~~~~~~~~~~~------------ 342 (485)
T TIGR00711 287 G----YTALQAG-----LHILPVGLAPMLSSPIAGRMGDK---IDPRKLVTIGLILYAVGFYWRAFTF------------ 342 (485)
T ss_pred C----CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHHHHHhccC------------
Confidence 1 1111111 11111112222233444444445 6667778888888888877665221
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 401 SDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
..+.+.+......++.|+|.+...++....+.+..|++++|+++|++++.+.+|+.+|+.+.+.+.+
T Consensus 343 ------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 ------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0223455556667889999999988888888899999999999999999999999999999888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-21 Score=204.23 Aligned_cols=166 Identities=10% Similarity=0.139 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
..++..++..+..+.....++.+ .+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHH
Confidence 33334444444444555556655 567999999999999999999999999999999997 9999999999999999988
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
++++. +++.+.+.|++.|++.|...+...+++.|++|+ ++|++++++++.
T Consensus 105 ~~~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~ 154 (434)
T PRK11663 105 FGFSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNT 154 (434)
T ss_pred HHHHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 88766 677888899999999999899999999999998 449999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
..++|..++|.+.+++.+++|||+.|++.++..++..+
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776554433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=203.65 Aligned_cols=171 Identities=21% Similarity=0.290 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 009231 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (539)
++..++..++.....+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.+++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3466777777777778888788999999999999999999999999999999999997 999999999999999966666
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
+++ +.+.++++|++.|++.+...++..+++.|.+|+++ |++.+++.+...
T Consensus 81 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~ 130 (352)
T PF07690_consen 81 FAS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE-------RGRAFGILSAGF 130 (352)
T ss_dssp HHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC-------HHHHHHHHHHHH
T ss_pred hhh-----------------------hHHHHhhhccccccccccccccccccccccchhhh-------hhhccccccchh
Confidence 544 56689999999999999999999999999999944 999999999999
Q ss_pred HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcC
Q 009231 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~ 224 (539)
++|..++|.+++++.++.+|++.|++.++..++..++.....
T Consensus 131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence 999999999999999899999999999988887766433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=212.50 Aligned_cols=173 Identities=14% Similarity=0.037 Sum_probs=138.5
Q ss_pred CcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
+|+.+....+..+....-.. +...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 34433333334444433333 344555677889999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
+++.++++++. +.+.++++|++.|+|.|+..|...++++|.+|+ +.|++.
T Consensus 243 ~i~~ll~afa~-----------------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~ 292 (742)
T TIGR01299 243 GFFAFFSSFVQ-----------------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEH 292 (742)
T ss_pred HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHH
Confidence 99998888766 678899999999999999999999999999998 559999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc-------------ccchhhhHHHHHHHHHHHHH
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDN-------------LGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~-------------~g~~~~f~i~~~~~l~~~~~ 219 (539)
+++......+|.++++.++.++..+ .+||+.|++.++..++.++.
T Consensus 293 ~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 293 LSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876655432 36888888877655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=199.67 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=138.8
Q ss_pred hhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 009231 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (539)
Q Consensus 38 ~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (539)
....+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..+++++.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3444557889999999999999999999999999999999997 999999999999999988888766
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009231 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~ 197 (539)
+.+.++++|++.|++.+...+...+++.|.+|+ ++|++++++.....++|..++|.+.+++.
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999998 55999999999999999999999999998
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 198 DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 198 ~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++.+|++.|++.+...++..+..+...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhheec
Confidence 8899999999888766655554444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=207.71 Aligned_cols=428 Identities=12% Similarity=0.056 Sum_probs=237.2
Q ss_pred CcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhc--------cCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH
Q 009231 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREY--------NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (539)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~ 86 (539)
+.+.++...+..+.+......+.+.++. +++.+ |++..+.+++.+++.++..+++++.|+++||+ ||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~ 87 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS 87 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence 3444444444555554444434443333 45544 89999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
++.+.+++.++.+++++....-.. ....+......++++|+++|++.|...|...++++|.+|+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~----- 151 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTS-----------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA----- 151 (479)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc-----------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-----
Confidence 999999999888877753210000 0001112356788999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhc--------ccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChh
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP 238 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~--------~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
++|+++.+.......+|..+++.+++.+. +..|||+.|++.++..++..+..+. .|+.++....+++.+
T Consensus 152 --~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~~ 228 (479)
T PRK10077 152 --HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF-VPETPRYLMSRGKQE 228 (479)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHcCCHH
Confidence 44899999999999999999987665442 4569999999887766555443332 333221100111111
Q ss_pred hHHHHHHHHHhhccCCCCCCCchhhhccCCCCc---ccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhh
Q 009231 239 GLTQVLVASFKNRRTKLPTQATEEMYHHGKGSM---RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASS 315 (539)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 315 (539)
+..+....... .. ......++..... .........+...... ........+|...
T Consensus 229 ~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 286 (479)
T PRK10077 229 QAEGILRKIMG-----NT--LATQALQEIKHSLDHGRKTGGKLLMFGVGVIV---------------IGVMLSVFQQFVG 286 (479)
T ss_pred HHHHHHHHHcC-----Ch--hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH---------------HHHHHHHHHHHhC
Confidence 11111110000 00 0000000000000 0000000000000000 0000000001000
Q ss_pred c-------c---CCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 009231 316 M-------D---RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWA 385 (539)
Q Consensus 316 ~-------~---~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~ 385 (539)
. . ...+ .+.... ........+...+...+...+.+| .+++..+..+.++++++.+.+.
T Consensus 287 ~~~~~~~~p~i~~~~g----~~~~~~-~~~~~~~~~~~~i~~~~~g~l~dr-------~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 287 INVVLYYAPEIFKTLG----ASTDIA-LLQTIIVGVINLTFTVLAIMTVDK-------FGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred hhHHHHHHHHHHHHcC----CCCchH-HHHHHHHHHHHHHHHHHHHHHHHH-------hcChHHHHHhHHHHHHHHHHHH
Confidence 0 0 0010 111100 011111111111222223334444 5566788888998888877766
Q ss_pred HHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHH-HhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHH
Q 009231 386 IVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAF-NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVA 464 (539)
Q Consensus 386 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg 464 (539)
... ..+....+.....++.+.+.+. ..|..+.++.+..|+++||+++|+.+..+++++.++
T Consensus 355 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~ 416 (479)
T PRK10077 355 TAF------------------YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416 (479)
T ss_pred HHH------------------hcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHH
Confidence 442 0011122233334445555443 336678888999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc
Q 009231 465 SLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 525 (539)
Q Consensus 465 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 525 (539)
+.+.+.+.+ .+|+.++. +....|++.+++++++.+..+...++.++++.+|
T Consensus 417 ~~~~p~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 467 (479)
T PRK10077 417 SWTFPMMDK-------NSWLVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467 (479)
T ss_pred HHHhHHHHh-------ccchhhhc---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence 988876542 12322211 1234566666666777666666666665554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=205.04 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=145.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~ 92 (539)
+.+++......+..+.+.+..+.... +..++++++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 44556666656666667766665544 44566789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++..+++++. +.+.++++|++.|+|.+...+...+++.|.+|+ ++|+
T Consensus 92 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r~ 141 (426)
T PRK12307 92 AYSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLKS 141 (426)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHhh
Confidence 9999999888876 778899999999999999999999999999998 4489
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHH
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~ 212 (539)
++.++...+..+|.++++.+.+.+.+..+|++.|++.+..
T Consensus 142 ~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 142 KASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999999999999998989999999875443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=197.40 Aligned_cols=353 Identities=14% Similarity=0.077 Sum_probs=219.5
Q ss_pred hhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009231 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (539)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (539)
.|.. ..+.+++.+++|+|.++.+++.+.+.++..++.++.|+++||+ |||+++..++++..++.++++++.
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence 4443 4456677889999999999999999999999999999999997 999999999999999999988877
Q ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
+.+.++++|.+.|++.+...++....+.+.+|+ + |+++.++...+.++|..+++.+
T Consensus 90 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 90 ----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K-------RGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c-------cHHHHHHHHHhcchhHhHHHHH
Confidence 788899999999999998888888888888763 2 7899999999999998876667
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCC-CCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCc
Q 009231 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSM 271 (539)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (539)
.+.+.+..+||+.|++.++..++..+..+...++.+++++ ++++..+..+......++
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 204 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRT--------------------- 204 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcC---------------------
Confidence 7777777899999999888766655544333222111110 000000000000000000
Q ss_pred ccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcc---hhhhhHHHHHHHHHHHhH
Q 009231 272 RLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDR 348 (539)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~ii~~~~l~~~ 348 (539)
.....+........ ......... ..... ...+ .+... ...+..+..++.. .
T Consensus 205 -----~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~----~ 258 (377)
T TIGR00890 205 -----PQFWVLYLSFFLNA-----------VSGLLLIGL-YKPYG-QSLG----LSDGFLVLAVSISSIFNGGGR----P 258 (377)
T ss_pred -----ccHHHHHHHHHHHh-----------HHHHHHHHH-HHHHH-HHcC----CCHHHHHHHHHHHHHHHHHHH----H
Confidence 00000000000000 000000000 00000 0111 11111 1111111112222 2
Q ss_pred HHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 009231 349 AVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAF 428 (539)
Q Consensus 349 ~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~ 428 (539)
....+.+| .++++.+..+.++.+++.+.....+ +......+...++.+++.+.
T Consensus 259 ~~g~l~dr-------~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 259 FLGALSDK-------IGRQKTMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLATVALVFFTWGG 311 (377)
T ss_pred HHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHHHHHHHHHHhcc
Confidence 23334444 4444567777777777766655442 11222233334556666666
Q ss_pred HhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 009231 429 NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 508 (539)
Q Consensus 429 ~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 508 (539)
..+....+..+..|+++||+++|+++....+|+.+++.+.+.+.+..+ +...|.+.+++.++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG----------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc----------------hhhHHHHHHHHHHHhc
Confidence 666667788899999999999999999999999999999988765332 4566666666665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=196.04 Aligned_cols=346 Identities=14% Similarity=0.084 Sum_probs=214.7
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.++.++...++..++.......++.. .+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||+++.+.++++++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 34555567777777665555555544 679999999999999999999999999999999997 9999999999999988
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
.+++.++. + .++.|+++|++.+...|+..+++.|.+|+ ++|+++.++
T Consensus 82 ~~~~~~~~-----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~ 128 (393)
T PRK11195 82 CLLMLFGI-----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGW 128 (393)
T ss_pred HHHHHHHH-----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHH
Confidence 88776544 2 26789999999999999999999999998 559999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCC-CCCChhhHHHHHHHHHhhccCCCC
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKA-NTSLLPGLTQVLVASFKNRRTKLP 256 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 256 (539)
.....++|.++||.++|++.+. .|+..+.+.+...+++.+... ..|+.+++++ .+.+.....+.+....+
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 199 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNL-FIPRLGARRPGQSWNPIALLRDFFHACR------- 199 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCCCHHHHHHHHHHHHH-------
Confidence 9999999999999999999875 477777766655444433322 2232221111 11111111111100000
Q ss_pred CCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhh---hhhccCCCCCCeeecCcchhh
Q 009231 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQ---ASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q---~~~~~~~~~~~~~~~~~~~~~ 333 (539)
..+.+ ...+..-... ...+......+ .......++ .++.....
T Consensus 200 -----~l~~~----------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~lg----~s~~~~G~ 245 (393)
T PRK11195 200 -----VLWRD----------KLGRFSLAGT---------------TLFWGAGATLRFLVLAWAPVALG----ITLNQPAY 245 (393)
T ss_pred -----HHHhC----------chhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHcC----CChhHHHH
Confidence 00000 0000000000 00000000000 000111111 12222111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
. .....+...+..++.+|+.+| .+.++.+..|+ ++++........+ +++
T Consensus 246 ~-----~~~~~~g~i~g~~~~~~l~~~---~~~~~~~~~g~-~~~~~~~~~~~~~----------------------~~~ 294 (393)
T PRK11195 246 L-----QAVVAIGIAVGAGAAARLVTL---ETVLRVLPAGI-LMGLVVLLMALQH----------------------SLL 294 (393)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhcC---CcccchHHHHH-HHHHHHHHHHHHh----------------------HHH
Confidence 1 111112222223334555444 44455566664 3333333333332 455
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
+.....++.|++.+...++.++.+.+..|++. +|+++|+.++.++++..++..+.+.+.
T Consensus 295 ~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 295 PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55666778899998888889999888777765 799999999999999999999988654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=195.09 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=151.0
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
.+..+.+.+..+...++.....+.+|. +.+++|.|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 345555555566666666666666654 5789999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.+++..+. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+
T Consensus 82 ~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 131 (385)
T TIGR00710 82 LSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRIY 131 (385)
T ss_pred HHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHHH
Confidence 9988888766 678899999999999999999999999999998 4599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++.+...++|..++|.+++++.++.+|++.|++.+...++..+..+...|
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998899999999888766665555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=197.48 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=149.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~ 92 (539)
|.+|+......+..+++......+ .+....+++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence 335665555555555544444433 3444588999999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
++.++..+++++. +.+.+++.|+++|++.+...|...+++.|.+|+ ++|+
T Consensus 82 ~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg 131 (412)
T TIGR02332 82 LWGIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRA 131 (412)
T ss_pred HHHHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHH
Confidence 9999999998876 678899999999999999999999999999998 5599
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc------cccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~------~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++.++++...++|..+++.+++++.+ ..|||+.|++.++..++..++.+...|
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999998763 369999999987766655444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=191.01 Aligned_cols=343 Identities=18% Similarity=0.202 Sum_probs=250.1
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
.+....++..++++...+.++.|. +++|.+..+.+++.+...++..++.++.|+++||+ ||||.+..+.+...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 344577788888888888888886 56799999999999999999999999999999997 9999999999999999988
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
...+. +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+.
T Consensus 81 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 130 (352)
T cd06174 81 LAFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE-------RGRALGLFSA 130 (352)
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc-------hhhhhhHHHH
Confidence 88765 67889999999999999999999999999999844 8999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCc
Q 009231 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQAT 260 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (539)
..++|..++|.+.+.+.+..+|++.|++.+...++..+...... +..........-..
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--------- 188 (352)
T cd06174 131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFFLLS--------- 188 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH---------
Confidence 99999999999999999988999999998877666555443322 11111110000000
Q ss_pred hhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecC---cchhhhhHH
Q 009231 261 EEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPS---GSFNIFAIL 337 (539)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~ 337 (539)
. ....+ ............+ .+. +........
T Consensus 189 ------------~---~~~~~---------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 222 (352)
T cd06174 189 ------------F---GYYGL---------------------------LTYLPLYLQEVLG----LSAAEAGLLLSLFGL 222 (352)
T ss_pred ------------h---HHHHH---------------------------HHHHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 0 00000 0000000000000 111 112222222
Q ss_pred HHHHHHHHHhHHHHHHhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHH
Q 009231 338 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKL-RMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 416 (539)
Q Consensus 338 ~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~-~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 416 (539)
..++..++ ..++.+|. ++++ .+..+..+..++.+.....+ +.+...
T Consensus 223 ~~~i~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~ 269 (352)
T cd06174 223 GGILGALL----GGLLSDRL-------GRRRLLLLIGLLLAALGLLLLALAP----------------------SLALLL 269 (352)
T ss_pred HHHHHHHH----HHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 22333332 33445554 3344 77888888888888777654 356677
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHH
Q 009231 417 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYY 496 (539)
Q Consensus 417 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (539)
...++.+++.+...+....++.+..|+++||+++|+.+...++++.+++.+.+.+.+.. ++...
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~----------------~~~~~ 333 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG----------------GYGGV 333 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------CcchH
Confidence 77889999999999999999999999999999999999999999999999998876422 23566
Q ss_pred HHHHHHHHHHHHHHHH
Q 009231 497 YWLLTALSMANFLYYL 512 (539)
Q Consensus 497 f~~~~~~~~v~~~~~~ 512 (539)
+++.+++.+++.+..+
T Consensus 334 ~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 334 FLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 7777777777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=192.28 Aligned_cols=178 Identities=12% Similarity=0.169 Sum_probs=151.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.++......+......+...+.++.+ ++++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 345556667777777777777777654 679999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++++++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++++
T Consensus 81 ~~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 130 (382)
T PRK10091 81 GNAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVA 130 (382)
T ss_pred HHHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHH
Confidence 999988766 788899999999999999888888889999887 44888999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
....+..+|..++|.+++++.+..+||+.|++.+...++..+..+...|+
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~ 180 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD 180 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99889999999999999999988999999999887666555444433343
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-20 Score=192.44 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=130.9
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHH-hhHHHHHHHHHhhccchHHHH-HHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATN-FLPIVGALLADSYVGRYRMIG-FGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~-i~~~~~G~laDr~~Grk~~~~-~~~~~~ 94 (539)
.+.+..++..++.+++...+.+.++.|+++++|+|.++.|++.+...+... ++++.+|+ +||+ ||||.++ .+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 445666667999999999999999999999999999999999877766555 44555555 9997 9998754 555555
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++..+.+++. +.+.+++.+.+.+...+...|...++..|..++++ +..+..
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 144 (393)
T PRK15011 93 VLACTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG-----REAVMF 144 (393)
T ss_pred HHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-----chHHHH
Confidence 56666666554 55555544444443344567777888877665522 112344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
.++.+...++|.++||.+++++.++.|||..|++.++..++..+..+...|+
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 196 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPS 196 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 5788888999999999999999999999999999887766655554444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=198.06 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=152.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
..+++|+.+....+..+.+.+..+......+ .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4466788888888888888888877766666 55789999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
.++..++.++++++. +++.+++.|++.|++.+...+...+++.|.+|++ +
T Consensus 84 ~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-------~ 133 (405)
T TIGR00891 84 IVLFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH-------L 133 (405)
T ss_pred HHHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh-------h
Confidence 999999988888765 6788999999999999999999999999999984 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccc--chhhhHHHHHHHHHHH
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLSA 217 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--~~~~f~i~~~~~l~~~ 217 (539)
|+++.++.....++|..+++.+.+.+.+..+ |++.|.+.++..++..
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998887666 9999987665544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-20 Score=191.31 Aligned_cols=154 Identities=8% Similarity=-0.000 Sum_probs=138.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++.+++..++..+++..+.+.+|.|++ ++|+|..++|++.+.+.++..++.++.|+++||+ ||||++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45788888999999999999999999976 6899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..++++++ +.+.+++.|+++|++.+...|...+.+.+..++ ++|+++++
T Consensus 84 ~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 133 (381)
T PRK03633 84 GCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLLA 133 (381)
T ss_pred HHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHH
Confidence 988888766 778899999999999999888888888888877 44899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
+++.+.++|..+||.+++.+.+...+
T Consensus 134 ~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 134 AYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999998765433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=193.82 Aligned_cols=166 Identities=19% Similarity=0.189 Sum_probs=139.2
Q ss_pred HHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccC
Q 009231 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILP 108 (539)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 108 (539)
..++.....+.+|. +.+++|.+..+.++..+.+.++..++.+++|+++||+ ||||+++.+++++.++.+++..+.
T Consensus 28 ~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~--- 102 (413)
T PRK15403 28 AYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT--- 102 (413)
T ss_pred HHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC---
Confidence 33344444444443 5779999999999999999999999999999999997 999999999999999998888766
Q ss_pred CCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 009231 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV 188 (539)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 188 (539)
+.+.++++|+++|++.+...+...+++.|.+|+ ++|++.+++.....++|..+
T Consensus 103 --------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 155 (413)
T PRK15403 103 --------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPII 155 (413)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999987677777888999988 44889999999999999999
Q ss_pred HHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 189 AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 189 g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
||.+++++.++.||++.|++.++..+++.+..+...|+
T Consensus 156 g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 156 GPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999888899999999888766665544443343
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=197.95 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~ 92 (539)
+.+|+.+..+.+..++..+..+.+...+ .++.+++|+|..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4455656666666667677666555544 566789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++.++++++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 94 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 143 (496)
T PRK03893 94 LFSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRN 143 (496)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHH
Confidence 9999998888766 778899999999999999999999999999998 5589
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHH
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIML 214 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l 214 (539)
++.++.+...++|..++|.+.+++.++.+|++.|++.+...+
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987544333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=197.77 Aligned_cols=159 Identities=11% Similarity=0.017 Sum_probs=126.9
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (539)
...+|+.++ |+|..+.+++.+.+.++..++.+++|+++||+ |||+++++++++.+++.++++++...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 444577777 99999999999999999999999999999997 99999999999999888887764310
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHH-HHHHHhhhhc
Q 009231 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI-VAVTCIVYIQ 197 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~g~~i~~~l~ 197 (539)
+.+.+.+++.|++.|++.+...|...+.+.|++|+ ++|+++.++++.+.++|.. .+|+++..+.
T Consensus 117 --------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 117 --------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred --------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 12566788889999999999888888889999988 4599999999999999864 5665443443
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 198 DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 198 ~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
...+||+.|++.++..++..++.+...+
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3459999999988766655444443333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=196.71 Aligned_cols=387 Identities=9% Similarity=-0.005 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..+......++..++++...++++.|+++++|+|+.+.|.+.+.+.++..+++++.|+++||+ ||||+++++.....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677776788888888888999999999999999999999999999999999999999999997 999999887666555
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..........+. -......+..+.++..+...+...+.+.++.++.. ++++..++
T Consensus 89 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPL-------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS-----RRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH-----hhccccch
Confidence 4432221110000 00011122222333333333333333333332211 23566777
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCC-----hhhHHHHHHHHHhhc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSL-----LPGLTQVLVASFKNR 251 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ 251 (539)
..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++.++++..+++ .....+......+++
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLP 223 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCC
Confidence 8888889999999999998876 4899999988877666555544433322111100000 000000000000000
Q ss_pred cCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh--h-hhhccCCCCCCeeecC
Q 009231 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE--Q-ASSMDRHVTPNFEIPS 328 (539)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--q-~~~~~~~~~~~~~~~~ 328 (539)
....+--... ......... + ........+ ....+.
T Consensus 224 --------------------------~~~~l~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 261 (420)
T PRK09528 224 --------------------------KFWFLVLYVI---------------GVACFYDVFDQQFPNFFASFFA-TPEQGT 261 (420)
T ss_pred --------------------------CeEeehHHHH---------------HHHHHHHHHHHHHHHHHHHHHh-ccCcch
Confidence 0000000000 000000000 0 000000000 000111
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccc
Q 009231 329 GSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVV 408 (539)
Q Consensus 329 ~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 408 (539)
.....+.....+ ...+.......+.+| .++++.+..+.++.+++.....+.+
T Consensus 262 ~~~g~~~~~~~~-~~~~~~~~~g~l~dr-------~g~~~~~~~~~~l~~~~~~l~~~~~-------------------- 313 (420)
T PRK09528 262 RVFGYLNSFQVF-LEALIMFFAPFIINR-------IGAKNALLLAGTIMAVRIIGSGFAT-------------------- 313 (420)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH-------hCcchhhHHHHHHHHHHHHHHHhcc--------------------
Confidence 111111111111 111112223344455 4555667777888888777766554
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 009231 409 QMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSN 487 (539)
Q Consensus 409 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~ 487 (539)
+++.+....++.+++.....+...+++.+..|++.+++..+. +++...+|..+++.+.+.+.+..+
T Consensus 314 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G----------- 380 (420)
T PRK09528 314 --GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG----------- 380 (420)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-----------
Confidence 455666667788888888888888888899999999998766 778889999999999988876442
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 488 INKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 488 ~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
+...|...+++.++..++.+...++
T Consensus 381 -----~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 381 -----FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777777776666655554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=192.83 Aligned_cols=180 Identities=16% Similarity=0.108 Sum_probs=146.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
..+.+|+.....++..+......+.... ..+++.+++|++..+.+++.+...++..++.++.|+++||+ |||+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~ 88 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWS 88 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHH
Confidence 3344455555555555555555544444 44566778999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
.++..++..++.++. +.+.+++.+++.|++.+...+...+++.|.+|+ ++
T Consensus 89 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~ 138 (398)
T TIGR00895 89 ILLFSVFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RF 138 (398)
T ss_pred HHHHHHHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------Hh
Confidence 999888888877655 677788999999999999999999999999998 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
|+++.++.....++|..++|.+++++.+..+|++.|++.+...++..++.+.
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999886555444444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-20 Score=192.05 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=146.3
Q ss_pred CCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH
Q 009231 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (539)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 93 (539)
+++|..+...+..++.....+.....++. +.+++|+|.++.+++.+.+.++..++.+++|+++||+ ||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44566777667777777776666666665 5679999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
..++..++++++ +.+.+++.|.++|++.|...+...+++.|.+|+ ++|++
T Consensus 82 ~~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRGS 131 (394)
T ss_pred HHHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHHH
Confidence 999988888755 677889999999999999999999999999987 34888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-ccccchhhhHHHHHHHHHHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQ-DNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~-~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
+.+..+...++|+.++|.+.+++. +..+||+.|.+.+...++..+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998888775 45799999998777665544433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=201.84 Aligned_cols=158 Identities=10% Similarity=0.002 Sum_probs=129.7
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (539)
...+.+.+++|+|..+.|++.+.+.+++.++++++|+++||+ ||||++..++++.+++..+.+.... .
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-~---------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-S---------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh-c----------
Confidence 334567889999999999999999999999999999999997 9999999998888877776664210 0
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009231 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~ 198 (539)
...+.+.+++.|+++|++.+...|...++++|++|+++ |+++++++..+.++|.++++.+..++.+
T Consensus 118 -------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 118 -------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK-------RGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred -------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc-------eeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 01278889999999999999999999999999999944 8999999999999999999988877665
Q ss_pred cc---cchhhhHHHHHHHHHHHHHHHh
Q 009231 199 NL---GWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 199 ~~---g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.. +|+..|.+.++..++..++.+.
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 43 5888888877766554444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-20 Score=189.86 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHH----HHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI----GFGCFT 93 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~----~~~~~~ 93 (539)
....+....++...++....+++|.|++ ++|+|..++|++.+.+.+...+++++.|.++||+ ||++.. ..+..+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 3344455667777777778899999985 7899999999999999999999999999999997 985433 222222
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
..+ .++..++ +++.+++.|.+++.+.+...|...++..+. + ++|++
T Consensus 83 ~~~--~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~~ 128 (382)
T TIGR00902 83 FAA--AFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFGL 128 (382)
T ss_pred HHH--HHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcCC
Confidence 222 1222223 678888999999999988888888876543 2 23788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
.++......++|.+++|.+++++.+++||+..|++.+...++..+. +...++.+++++++++.....+......++++.
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPPKDAIPEDESQGDSAFIALLKNPMN 207 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCCCccccccccccchhHHHHHcChHH
Confidence 8999999999999999999999999999999998876543333222 222222111110000000000000000110000
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhh
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 333 (539)
..++-...... ..+..........+.. .+ .+......
T Consensus 208 -------------------------~~~l~~~~l~~-------------~~~~~~~~~~~~~l~~-~g----~s~~~~g~ 244 (382)
T TIGR00902 208 -------------------------LRFLAAVCLIQ-------------GAHAAYYGFSAIYWQA-AG----ISASATGL 244 (382)
T ss_pred -------------------------HHHHHHHHHHH-------------HHHHHHHHHHHHHHHH-CC----CCHhHHHH
Confidence 00000000000 0000000001111111 11 22222222
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
... ...+.+.+...+.+|+.+| ++.++.+.+|.++.++......+.+ +++
T Consensus 245 l~~-----~~~~~~i~~~~~~~~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~ 294 (382)
T TIGR00902 245 LWG-----IGVLAEIIIFAFSNKLFQN---CSARDLLLISAIACVGRWAIIGAIE----------------------AFP 294 (382)
T ss_pred HHH-----HHHHHHHHHHHHhHHHHhh---CCHHHHHHHHHHHHHHHHHHHHhHh----------------------hHH
Confidence 211 1223333345556677777 8888999999999999988887765 667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcc
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 492 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 492 (539)
.++...++.++..+...+....++.+. |++.|++++++++ ...++|..+|+.+.|.+.+..+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---------------- 357 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---------------- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 777778999999999999999999988 9999999999987 4678999999999988775442
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009231 493 YDYYYWLLTALSMANFLY 510 (539)
Q Consensus 493 ~~~~f~~~~~~~~v~~~~ 510 (539)
...|+..+++.+++.++
T Consensus 358 -~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 -AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 24577777777666443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=194.98 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=135.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~ 92 (539)
+++++.+.......++.....+...+.++ ++.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~ 109 (476)
T PLN00028 32 RPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLM 109 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 33444444444455555555555554444 66889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+..++.++.+++. +...+++.|+++|++.+... ....++++.+|+ ++|+
T Consensus 110 ~~~~~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------~~rg 158 (476)
T PLN00028 110 LTAPAVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------KIVG 158 (476)
T ss_pred HHHHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------hhee
Confidence 9998888888766 66778889999999988754 355678999998 4489
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc----c-----cccchhhhHHHHHHHHHHHHHHHh
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQ----D-----NLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~----~-----~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
++.++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..+..+.
T Consensus 159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988878888888776665442 1 258999999988876655544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=189.82 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=139.3
Q ss_pred CCCc-chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 13 KGGL-RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
|..| |.+....+.+++..++.+....+++.|+ +++|+|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~ 85 (402)
T TIGR00897 8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGL 85 (402)
T ss_pred HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHH
Confidence 3344 4566666688888888888888899988 67899999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++..++.+++.... .. ..+.+.+++.|++.|+|.+...+...+.+.+.+|+ ++|
T Consensus 86 ~~~~~~~~~~~~~~-~~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~ 139 (402)
T TIGR00897 86 LLWCVGHAAFIVFG-LG------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNL 139 (402)
T ss_pred HHHHHHHHHHHHHh-cc------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHH
Confidence 99888876553211 00 01566778889999999988878888888899888 449
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHhhhhcccccchhhhHHHHH
Q 009231 172 QSYFSWYYVFVSASS-IVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~-~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
+++.++.+...++|. .++|.+++++.+..||+..++....
T Consensus 140 g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 140 SSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999999999999996 6899999999888887666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=196.92 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=129.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHH-HH-----HHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAA-TN-----IIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~-~~-----i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
+......+..+++..-+. +..+...++.++++.+.++. .+ +.++..++..+++++.|+++||+ ||||++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 444555556677766554 45566678888886544321 22 24666788889999999999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
+++++++.++++++.+..+. ..-.+..+++.|+++|+|.|+..++..++++|.+|+++
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~---------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------- 151 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATI---------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------- 151 (490)
T ss_pred HHHHHHHHHHHHhcccHHHH---------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-------
Confidence 99999999999987621100 00001247889999999999999999999999999844
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc--------ccccchhhhHHHHHHHHH
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLL 215 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~--------~~~g~~~~f~i~~~~~l~ 215 (539)
|+++.++...+..+|..+|+.+...+. .++|||+.|++.++..++
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 888889888888888888876554432 257999999987654443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=194.81 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=130.7
Q ss_pred hccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCC
Q 009231 47 EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESAT 126 (539)
Q Consensus 47 ~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (539)
++|++..+.|++.+.+.++..++.+++|+++||+ |||+++..++++..++.+++..+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------- 127 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------- 127 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH---------------------
Confidence 7899999999999999999999999999999997 999999999999888887765443
Q ss_pred ccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc-ccchhh
Q 009231 127 WSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKVG 205 (539)
Q Consensus 127 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~g~~~~ 205 (539)
..+...+++.|+++|++.+...|...++++|++|+ ++|+++.++.+.+.++|..++|.+++++.+. .+|++.
T Consensus 128 ~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 128 GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 01456788999999999999999999999999998 5599999999999999999999999999888 499999
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 009231 206 FGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 206 f~i~~~~~l~~~~~~~~~~~ 225 (539)
|++.++..++..++.+...+
T Consensus 201 f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred hhhhhHHHHHHHHHHHHHhc
Confidence 99988876665555444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=189.51 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=144.7
Q ss_pred CcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
.+|..........+..++.+...+.++. +.+++|+|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566666666666666666655555554 4689999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++..++.++. +.+.+++.|++.|++.+...+....+..|.+++ ++|+++
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 133 (394)
T PRK11652 84 ILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRHA 133 (394)
T ss_pred HHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHHH
Confidence 99888877655 677889999999999988888888888888877 448888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
.++...+..++..++|.+++++.++.||++.|++.+...++..+..
T Consensus 134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 9999899999999999999999888999999998876655444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=197.76 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=126.5
Q ss_pred HhhhhccCC--------hhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009231 43 YLCREYNME--------TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (539)
Q Consensus 43 yl~~~lg~s--------~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (539)
.+..+++.+ ..+.+++.+.+.++..++.+++|+++||+ ||||+++.+.+++.++..++....+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------- 123 (481)
T TIGR00879 53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------- 123 (481)
T ss_pred cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 334555555 89999999999999999999999999997 9999999999999999888866441
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHh-
Q 009231 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI- 193 (539)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~- 193 (539)
..+.+.++++|+++|+|.+...+...++++|.+|++ +|+++.++.+...++|..+++.++
T Consensus 124 ------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~~~ 184 (481)
T TIGR00879 124 ------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA-------LRGALTSLYQLAITFGILVAYGFGS 184 (481)
T ss_pred ------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh-------hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 114567899999999999999999999999999984 489999999999999999999988
Q ss_pred --hhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 194 --VYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 194 --~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
+...+..+||+.|++.+...++..+..
T Consensus 185 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 185 GKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 666677899999999666555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=198.24 Aligned_cols=379 Identities=13% Similarity=0.073 Sum_probs=225.3
Q ss_pred HHhhhhccCC---hhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 009231 42 LYLCREYNME---TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (539)
Q Consensus 42 ~yl~~~lg~s---~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (539)
..+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.+++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3457789999 99999999999999999999999999997 999999999999999988888766
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009231 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~ 198 (539)
+++.+++.|++.|++.+...+...+++.|.+|++ +|+.+.++......+|.+++|.++..+.+
T Consensus 179 ----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 179 ----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK-------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred ----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7888999999999999999999999999999984 48999999888889999999987766543
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcc
Q 009231 199 NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSEN 278 (539)
Q Consensus 199 ~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (539)
||+.|++.++..++..+..+. .|+.++....+.+..+..+.+....+......+. +.......++..... ..
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 313 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLSWF-VPESPRWLISQGRIEEALKILQRIAKINGKKLPA-EVLSLSLEKDLSSSK---KQ 313 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCH-HHHhhhhhhhhhhcc---CC
Confidence 999999888766655544433 2322111011122223333333332221111110 000000000000000 00
Q ss_pred hhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-----hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHH
Q 009231 279 LRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-----QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPL 353 (539)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l 353 (539)
..+.+.. .. +......+..+... .......... ....+......+..+ .......+...+
T Consensus 314 ~~~~~l~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~i~~~~~~~~l 378 (505)
T TIGR00898 314 YSFLDLF---RT-------PNLRKTTLCLMMLWFTTAFSYYGLVLDLG-NLGGNIYLDLFISGL----VELPAKLITLLL 378 (505)
T ss_pred CcHHHHh---CC-------hHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCChHHHHHHHHH----HHHHHHHHHHHH
Confidence 0000000 00 00000000000000 0011111110 000111011111111 111111123334
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhh
Q 009231 354 ASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQ 433 (539)
Q Consensus 354 ~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~ 433 (539)
.+| .+++..+.+++++.+++.+.+.+.. ....+......++.+.+....++..
T Consensus 379 ~dr-------~grr~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (505)
T TIGR00898 379 IDR-------LGRRYTMAASLLLAGVALLLLLFVP--------------------VDLYFLRTALAVLGKFGITSAFQMV 431 (505)
T ss_pred HHH-------hCCHHHHHHHHHHHHHHHHHHHHcC--------------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455 4555677788888888777665543 1122334444556666777777888
Q ss_pred hhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 009231 434 TEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLA 513 (539)
Q Consensus 434 ~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~ 513 (539)
+.+..+..|++.|++++|+.+....+|++++|.+.+ ..+. +....+++.+++.+++.+..++
T Consensus 432 ~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 432 YLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-----------------WLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-----------------HHhhHHHHHHHHHHHHHHHHHc
Confidence 889999999999999999999999999999999887 3321 1233456666666666554443
Q ss_pred Hhhhccc
Q 009231 514 CCKAYGP 520 (539)
Q Consensus 514 ~~~~~~~ 520 (539)
.+++++
T Consensus 494 -lpet~~ 499 (505)
T TIGR00898 494 -LPETKG 499 (505)
T ss_pred -CcCCCC
Confidence 344443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=202.66 Aligned_cols=341 Identities=29% Similarity=0.404 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCC
Q 009231 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 163 (539)
Q Consensus 84 k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~ 163 (539)
.|++++|.+++.+|.+++.+++ .|... .++.+...++++..++++|.|+++|+..++++|++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~-~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSA-IPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHH-TSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHH-hcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4889999999999999988887 44311 122356789999999999999999999999999999875
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeec-CCCCCChhh-HH
Q 009231 164 GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKS-KANTSLLPG-LT 241 (539)
Q Consensus 164 ~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 241 (539)
+ ++|.++++++|++.|+|+.+++.+.+++.++.||.+.|.++++..+++.+.++..++++... ++.+++..+ ..
T Consensus 67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 4 66999999999999999999999999999999999999999999999999999998887766 555566665 44
Q ss_pred HHHHHHHhhccCCCCCCCchhhhccC-CCCcccCCCcchhhhhhhh-------hh--cCCCCCCCCCCCCC---CCc--c
Q 009231 242 QVLVASFKNRRTKLPTQATEEMYHHG-KGSMRLMPSENLRFLNKAC-------MA--KHPEQDLTPDGRAS---NPN--S 306 (539)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~---~~~--~ 306 (539)
.++....+++....+. ......+.. ..++.... ......+... .. .+.++.++..+... ..+ +
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 220 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPK-GSSWLDWALFQYSERSIF-GIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFW 220 (372)
T ss_dssp HHHHHHHHHHCCCH-H-HHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHH
T ss_pred HHHHHHHHHhhccccc-chHHHHHhhhhhhhhhhh-hhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEE
Confidence 4555555554443321 111111100 00000000 0000000000 00 00011110000000 011 1
Q ss_pred chhHh-----------hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHH
Q 009231 307 LCTVE-----------QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLL 375 (539)
Q Consensus 307 ~~~~~-----------q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~ 375 (539)
+...+ |...+|+...+.+++|+++++.+|.+.++++.|+.+.+.+|+.+ .+++ ++...++.+|++
T Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~---~~~~~k~~~G~~ 296 (372)
T PF00854_consen 221 IFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQ---PSPPQKFGIGMV 296 (372)
T ss_dssp HHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T---------HHHHHHH-H
T ss_pred EEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hccc---chhhhhhhHHHH
Confidence 11111 34445555544488999999999999999999999999999888 3333 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHH
Q 009231 376 FSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGA 455 (539)
Q Consensus 376 l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~ 455 (539)
++.++++....++.++......++ ..+.+|..+.+++..++|.+..+...+.+++.+|++..+.++|++..
T Consensus 297 ~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~ 367 (372)
T PF00854_consen 297 FAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA 367 (372)
T ss_dssp HHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 999999998888754443333333 23447777999999999999999999977777777776666666665
Q ss_pred HH
Q 009231 456 GL 457 (539)
Q Consensus 456 ~~ 457 (539)
..
T Consensus 368 ~~ 369 (372)
T PF00854_consen 368 LS 369 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=187.43 Aligned_cols=376 Identities=10% Similarity=-0.012 Sum_probs=237.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhh-hccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|.++. ....+.-.+....+...+..++.+ ++|+|.+|.+++.++..+.+.+..++.|++.||+ |.||++.++.++..
T Consensus 34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 44433 333344444444455555556554 8999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
+.+++.+++...+ ..+++.+++.|++.|++ +...++....+++++|+ ++|+++.
T Consensus 112 i~~~~~~~a~~~~------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSAL 165 (462)
T ss_pred HHHHHHHHHHccc------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHH
Confidence 9998888752000 12688899999999998 66788899999999999 4589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-----c-------------cccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCCh
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQ-----D-------------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLL 237 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~-----~-------------~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
++.....|+|..+++.+.+.+. . ..+|+.++++..+..++..+..++..+..+ +++...
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~---~~~~~~ 242 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA---SSRASI 242 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---ccccCH
Confidence 9997777777776665554322 2 234677777776666655555554322211 112222
Q ss_pred hhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh------
Q 009231 238 PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE------ 311 (539)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 311 (539)
.+..++ +|+++ .|+-... ..+...
T Consensus 243 ~~~~~v----lk~~~---------------------------~Wllsll-------------------y~~tFG~fvg~s 272 (462)
T PRK15034 243 ADQLPV----LQRLH---------------------------LWLLSLL-------------------YLATFGSFIGFS 272 (462)
T ss_pred HHHHHH----hCCCc---------------------------hhHHHHH-------------------HHHHHHHHHHHH
Confidence 222222 12111 1100000 000000
Q ss_pred --hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009231 312 --QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEA 389 (539)
Q Consensus 312 --q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~ 389 (539)
........ .+ ...........++...+..|+.+++.+| .+.++.+.++.+.+++.........
T Consensus 273 ~~lp~~~~~~------~~-----~~~~l~~~~l~~l~~~l~rplgG~LADR---iG~~~vl~~~~i~~~i~~~~~~l~l- 337 (462)
T PRK15034 273 AGFAMLAKTQ------FP-----DVNILRLAFFGPFIGAIARSVGGAISDK---FGGVRVTLINFIFMAIFSALLFLTL- 337 (462)
T ss_pred HHHHHHHHHH------cC-----hHHHHHHHHHHHHHHHHHHHhhHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHh-
Confidence 00000000 11 1111111223344444455556666665 7777888888877777654433222
Q ss_pred HHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc---------------------hhhhH
Q 009231 390 ARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK---------------------SMSSI 448 (539)
Q Consensus 390 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~---------------------~~rg~ 448 (539)
+ . ....+.+.....++...++.++.+.+.+.++.+..|+ ++.|.
T Consensus 338 ------p--------~-~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (462)
T PRK15034 338 ------P--------G-TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAA 402 (462)
T ss_pred ------c--------c-ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHH
Confidence 0 0 0112445555555556667777777777777777764 26888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 449 ASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 449 ~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
+.|+....+.+|+++-|.+++...+.++ ++...|+.+.+..++++.+.|..+.|+
T Consensus 403 v~G~v~a~G~~Ggf~~p~~~g~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 403 ALGFISAIGAVGGFFIPQAFGMSLNMTG---------------SPVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHcC---------------CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999988887765553 356778888888888888888877554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-19 Score=187.76 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=127.7
Q ss_pred CcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhc--cCChhHHHHHHH-----HHHHHHHhhHHHHHHHHHhhccchHHH
Q 009231 15 GLRTLPFIIANEAFERMATVGFTPNMILYLCREY--NMETTAATNIIF-----IWTAATNFLPIVGALLADSYVGRYRMI 87 (539)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~i~~-----~~~~~~~i~~~~~G~laDr~~Grk~~~ 87 (539)
++|.+...++..++|...+.......+.++.+++ +.++.+ +++.+ ...++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3455555555666666655544445555666665 677764 54432 33445567788889999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCcc
Q 009231 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS 167 (539)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~ 167 (539)
..+.++++++.++++++++... ........+++.|+++|++.|...|+..+++.|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---- 158 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFST---------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---- 158 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH---------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence 9999999999999998662110 000012257888999999999999999999999999844
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhc--------ccccchhhhHHHHHHHHH
Q 009231 168 KGALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLL 215 (539)
Q Consensus 168 ~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~--------~~~g~~~~f~i~~~~~l~ 215 (539)
|+...+....+..+|..++..+..++. .++|||+.|++.++..++
T Consensus 159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 888888888888888888877666554 257999999987765433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=189.30 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=125.4
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhcc---CChhHHHHHHHH---HHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYN---METTAATNIIFI---WTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~i~~~---~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
..+++...+.. ..++..++.++++ .+..+.+.+.+. ..++..++.+++|+++||+ ||||++..++++++++.
T Consensus 30 ~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 30 GNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 45555555544 5677778888884 556654444444 4444458999999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
++++++.+..+ ........+++.|+++|+|.|+..|...++++|.+|+++ |+++.++.
T Consensus 108 ~~~~~~~~~~~---------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-------rg~~~~~~ 165 (432)
T PRK10406 108 LVIACLPGYET---------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-------KGFYASFQ 165 (432)
T ss_pred HHHhhcCCchh---------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-------ccHHHHHH
Confidence 99887652110 000123468899999999999999999999999999844 88888988
Q ss_pred HHHHHHHHHHHHHHhhhhc--------ccccchhhhHHHHHHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAVIMLLS 216 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~--------~~~g~~~~f~i~~~~~l~~ 216 (539)
+...+.|..+++.+...+. ..+|||++|++.++..++.
T Consensus 166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8888888888887655443 2579999999877755544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=191.45 Aligned_cols=183 Identities=14% Similarity=0.175 Sum_probs=161.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
..+..++.+.++++.+++++.-=|.+-..+ .=.++.+|.+++..|++...+.+...++.|+.|+++||+ .||+++.+|
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG 104 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG 104 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence 344445667778888888888887666533 345778999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
..++.++.++++++. .+|.+.+.|.+.|+|.+.+.|.++++++|.+|+++
T Consensus 105 ~~iW~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------- 154 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------- 154 (493)
T ss_pred HHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-------
Confidence 999999999999987 89999999999999999999999999999999944
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcCC
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
|++.++++|+++++|.++|..+++++.+..+ |||+|++.+++.++..++..+..+
T Consensus 155 Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 155 RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999988777 999999999988776665544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=192.70 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=138.3
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhh-----ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccch
Q 009231 10 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY 84 (539)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk 84 (539)
+..+.+++.+.+.....+.+......+....+.. .++ .+.+..+.+++.+.+.++..++.++.|+++||+ |||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr 86 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKML-GYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRK 86 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccH
Confidence 3445555555555556666665555444444443 332 345677888999999999999999999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCC
Q 009231 85 RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG 164 (539)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~ 164 (539)
+++.++++++.++.++++++.+.. +..+...++++|+++|++.|+..+..+++++|.+|+
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~--- 146 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSS-----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK--- 146 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcc-----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh---
Confidence 999999999999988887654100 001357799999999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----------------------cccchhhhHHHHHHHHHHHH
Q 009231 165 TKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----------------------NLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 165 ~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~-----------------------~~g~~~~f~i~~~~~l~~~~ 218 (539)
+.|+++.++.+....+|..+++.+..++.. ..+||+.|.+.++..++..+
T Consensus 147 ----~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 147 ----KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999987765421 24799999877665544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=186.09 Aligned_cols=389 Identities=9% Similarity=0.019 Sum_probs=226.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++......++...++....++++.|+++++|+|..+.+++.+.+.++..++.++.|+++||+ ||||.++.++...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4567777788888899999999999999999999999999999999999999999999999997 999999988776655
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..........+. ........+++++++.+++.+...|...++..|..++ ++..++
T Consensus 81 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g 136 (396)
T TIGR00882 81 LFAPFFIYVFGPL---------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYG 136 (396)
T ss_pred HHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccc
Confidence 4433221110000 0000123356667888888888888887777664322 334566
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCC
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (539)
......++|.++||.+++.+.+ .+|+..|++.+...++..+..+...++.++++++++. .+++ ..+
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~~ 202 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANA-----------LGAN--ASA 202 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcc-----------cccc--cCC
Confidence 6777789999999999988865 5999999998877666554444332221111000000 0000 000
Q ss_pred CCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhH
Q 009231 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAI 336 (539)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 336 (539)
. ..+...+ ....+.+..+-..... ....+................ ..............
T Consensus 203 ~-~~~~~~~-------~l~~~~~~~~~l~~~~------------~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~g~~~~ 261 (396)
T TIGR00882 203 F-SLKLALE-------LFRQRKFWMFVLYVVG------------VACVYDVFDQQFANFFTSFFA-TPQQGTRVFGYVTT 261 (396)
T ss_pred C-CHHHHHH-------HHcCCcHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHH
Confidence 0 0000000 0000000000000000 000000000000000000000 00011111111111
Q ss_pred HHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHH
Q 009231 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 416 (539)
Q Consensus 337 ~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 416 (539)
...+... +.......+.+| .++++.+.++.++.++++......+ +.+++.
T Consensus 262 ~~~i~~~-~~~~~~g~l~~r-------~g~~~~l~~~~~l~~l~~~~~~~~~----------------------~~~~~~ 311 (396)
T TIGR00882 262 MGELLNA-LIMFCAPLIINR-------IGAKNALLIAGTIMSVRIIGSSFAT----------------------TALEVV 311 (396)
T ss_pred HHHHHHH-HHHHHHHHHHHH-------hccchhHHHHHHHHHHHHHHHHhcC----------------------ChHHHH
Confidence 1111111 111222333444 5555677888888777766544433 455666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhH
Q 009231 417 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 495 (539)
Q Consensus 417 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 495 (539)
+..++.+++.........++..+..|++.+++..+. +++...+|+.+++.+.+.+.+..+ +..
T Consensus 312 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G----------------~~~ 375 (396)
T TIGR00882 312 ILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG----------------FQG 375 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc----------------cHH
Confidence 667788888777766777777788899999988777 678899999999999988876442 466
Q ss_pred HHHHHHHHHHHHHHHH
Q 009231 496 YYWLLTALSMANFLYY 511 (539)
Q Consensus 496 ~f~~~~~~~~v~~~~~ 511 (539)
.|.+.+++.++..++.
T Consensus 376 ~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 376 AYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666665543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=182.13 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=136.6
Q ss_pred HHHHhhcchhhHHHH--hhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 009231 29 ERMATVGFTPNMILY--LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (539)
Q Consensus 29 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (539)
..++++....++|.+ +++++|.|+++.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++..++.++.
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE- 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444444445544 6789999999999999999999999999999999997 999999999999988888887755
Q ss_pred cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 009231 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 186 (539)
+.+.+++.|+++|++.+...+...+++.|.+|+ +++++.++......++|.
T Consensus 93 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 143 (401)
T PRK11043 93 ----------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSP 143 (401)
T ss_pred ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHH
Confidence 677889999999999888888888999999988 447888888888889999
Q ss_pred HHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 187 ~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.++|.+++++.++.+|++.|++.+...++..+..+.
T Consensus 144 ~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 144 ALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887766655544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-19 Score=189.06 Aligned_cols=360 Identities=15% Similarity=0.079 Sum_probs=240.0
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.+..+....++.+++......-++-++. ++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+-++.++.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 3444444777777777666666665554 6678999999999999999999999999999997 9999999999988777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
...+++..... ..+++.+++..++.|++.+...|+.++++.+..|+++ ..++.++
T Consensus 89 ~~~L~~l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~-------L~~A~al 143 (524)
T PF05977_consen 89 ALLLAVLAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED-------LPAANAL 143 (524)
T ss_pred HHHHHHHHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh-------HHHHHHH
Confidence 66665443111 2267888888999999999999999999999999944 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCC
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPT 257 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 257 (539)
.....|++..+||.++|.+....|-.+.|.+.++..++........++..++++ .+.+...+.++..++.-+. .
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~---~~~e~~~~~l~~G~ryv~~-~-- 217 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS---LPRERFFSALREGLRYVRS-S-- 217 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc---cchhhhhhhHHHHHHHHhc-c--
Confidence 999999999999999999988889999999998877766555444333222111 1111122222111110000 0
Q ss_pred CCchhhhccCCCCcccCCCcchh-hhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhH
Q 009231 258 QATEEMYHHGKGSMRLMPSENLR-FLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAI 336 (539)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 336 (539)
...+ .+-......- .....|.+ ........++ ..+..++.+..
T Consensus 218 -------------------~~l~~~l~~~~~~~l---------~~~a~~aL----lPl~a~~~l~----~~a~~yGll~a 261 (524)
T PF05977_consen 218 -------------------PPLRSVLLRSFLFNL---------FASAVWAL----LPLFARDVLG----GGASGYGLLLA 261 (524)
T ss_pred -------------------hHHHHHHHHHHHHHH---------hhhHHHHh----hhHHHHHHhC----CcHHHHHHHHH
Confidence 0000 0000000000 00000000 0000000110 11222222221
Q ss_pred HHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHH
Q 009231 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQL 416 (539)
Q Consensus 337 ~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 416 (539)
. ..++..+..-+..++.++ .+..+.+..+.++.+++.+.+++.. +.+..+
T Consensus 262 ~-----~gvGai~Gal~~~~l~~~---~~~~~lv~~~~~~~a~~~~~lal~~----------------------~~~~~~ 311 (524)
T PF05977_consen 262 A-----FGVGAILGALLLPRLRRR---LSSRRLVLLASLLFALALLLLALSP----------------------SFWLAL 311 (524)
T ss_pred H-----HHHHHHHHHHHHHHhhcc---cCcchhhHHHHHHHHHHHHHHhcch----------------------HHHHHH
Confidence 1 111111112223444444 6666778888888888888877765 667777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 417 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 417 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
+.+++.|++....++..++.+++.+|+++||++++++.+....+..+|..+.|.+.+..+
T Consensus 312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788889999999999999999999999999999999999999999999999998876553
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=181.80 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=141.1
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (539)
..+....++....+.+|.+ .+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+...++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHh
Confidence 4555556655555556654 678999999999999999999999999999999997 99999999999999998888765
Q ss_pred hccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHH
Q 009231 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 184 (539)
. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|+++.++.+...++
T Consensus 89 ~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~i 138 (392)
T PRK10473 89 E-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGITCI 138 (392)
T ss_pred C-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHH
Confidence 5 677788899999999999889999999999998 4599999999999999
Q ss_pred HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 185 g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
|..++|.+++.+.+..+|++.|++.+...++..++.+.
T Consensus 139 ~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 139 IPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999988766655554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-19 Score=183.24 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=140.1
Q ss_pred HhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 009231 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (539)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (539)
+.....+.++.+. +++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++.++.
T Consensus 6 ~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------ 77 (377)
T PRK11102 6 AIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------ 77 (377)
T ss_pred HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence 3344557777775 57999999999999999999999999999999997 999999999999999998888765
Q ss_pred CCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 009231 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (539)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~ 191 (539)
+.+.+++.|+++|++.+...+...+++.|.+|+ ++|++++++.+...++|..++|.
T Consensus 78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999988 44999999999999999999999
Q ss_pred HhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 192 i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
+++++.++.+|++.|++.+...++..+......+
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999899999999888776665554433333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=181.31 Aligned_cols=339 Identities=9% Similarity=0.021 Sum_probs=207.1
Q ss_pred HHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccch----HHHHHHHHHHHHHHHHH
Q 009231 26 EAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY----RMIGFGCFTCLLGMVLL 101 (539)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk----~~~~~~~~~~~~~~~l~ 101 (539)
.++-.+++..+.+++|.|++ ++|.|.+++|++.+.+.+...++.+++|.++||+ ||+ +.+.++..+.. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHH
Confidence 44555677778899999985 6899999999999999999999999999999997 984 33332222221 1111
Q ss_pred HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHH
Q 009231 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (539)
..++ +.+.+++.|.+.+++.+...|...++..+..+ +|+++++.....
T Consensus 89 ~~~~-----------------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~---------~~~~a~~~~~~~ 136 (382)
T PRK11128 89 FGAH-----------------------SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK---------QIGLDYGKVRLW 136 (382)
T ss_pred Hhcc-----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh---------hccCCcchHHHH
Confidence 1112 67888899999999999999988888777632 266777777778
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCch
Q 009231 182 VSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATE 261 (539)
Q Consensus 182 ~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (539)
.++|.++||.+++++.+++||+..|++.+...++..+... ..|+..++++++++..+..+.+....+++.
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------- 206 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTIMPQGESRQQESAGWPAWKALLKEPT--------- 206 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCCCCccccccccccccchHHHHHcChh---------
Confidence 8999999999999999999999999887765444433322 222111100000000000000000000000
Q ss_pred hhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHH
Q 009231 262 EMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTI 341 (539)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 341 (539)
.....-..... . ................ .+ .+...........
T Consensus 207 ----------------~~~~~~~~~l~-~------------~~~~~~~~~~~~~~~~-~g----~s~~~~g~~~~~~--- 249 (382)
T PRK11128 207 ----------------VWRFLLCVSLL-Q------------GSHAAYYGFSAIYWQA-AG----YSASTIGYLWSLG--- 249 (382)
T ss_pred ----------------HHHHHHHHHHH-H------------HHhHhHHHHHHHHHHH-CC----CCHhHHHHHHHHH---
Confidence 00000000000 0 0000000000011111 11 1111122221111
Q ss_pred HHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHH
Q 009231 342 WIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVL 421 (539)
Q Consensus 342 ~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l 421 (539)
.+.+.....+.+|+.+| .+.++.+..+.++.+++++.....+ +++.+++..++
T Consensus 250 --~~~~~~~~~~~g~l~~r---~~~~~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l 302 (382)
T PRK11128 250 --VVAEVLIFAFSNRLFRR---WSARDLLLLSAICGVVRWGLMGSTT----------------------ALPWLIVIQIL 302 (382)
T ss_pred --HHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHH
Confidence 11222233445555555 7778888888888888877766554 56666777888
Q ss_pred HHHHHHHHhhhhhhhhhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q 009231 422 SGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDIT 475 (539)
Q Consensus 422 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~lg~~l~~~i~~~~ 475 (539)
.|++++...+....++.+. |++.+++++++++ ....+|..+|+.+.|.+.+..
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988887 5656799999987 556788899999998877644
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=187.05 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=134.6
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (539)
...+++.+++|+|..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++.++++++.
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 344577889999999999999999999999999999999997 999999999999999999888766
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHH-HHhhhhc
Q 009231 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV-TCIVYIQ 197 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~-~i~~~l~ 197 (539)
+.+.+++.|++.|++.+...|...+++.|.+|+ ++|+++.++.+...++|..++| .+++.+.
T Consensus 82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999998 4489999999999999999999 5677777
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhc
Q 009231 198 DNLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 198 ~~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
+..+|++.|++.+...++..+..+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhee
Confidence 78899999998887666554444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-18 Score=180.97 Aligned_cols=390 Identities=12% Similarity=0.058 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q 009231 22 IIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr-k~~~~~~~~~~~~~~~l 100 (539)
+..+.++...++....++++.|+++++|+|..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++.+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 34566777777777889999999999999999999999999999999999999999996 65 77888888877777777
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCC-CccchhhhHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG-TKSKGALQSYFSWYY 179 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~-~~~~~~r~~~~~~~~ 179 (539)
..+.+ +++.+.+.|++.+++.+...|...++..+...+..+ ..+...|.+.++
T Consensus 86 ~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--- 139 (418)
T TIGR00889 86 AAQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--- 139 (418)
T ss_pred HHHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh---
Confidence 66544 566677888888888776666655543322211000 000011344433
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCC-CChhhHH-HHHHHHHhhccCCCCC
Q 009231 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-SLLPGLT-QVLVASFKNRRTKLPT 257 (539)
Q Consensus 180 ~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~~ 257 (539)
.+|.++||.+++.+.....|. +|++.++..++..+..+ ..|+.++.++++ ....+.. .......+++++.
T Consensus 140 ---~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~--- 211 (418)
T TIGR00889 140 ---TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMA--- 211 (418)
T ss_pred ---hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHHHhhhhHHHHhcCCCee---
Confidence 478899998888884333343 46666655554443322 223222111111 0000000 0000000000000
Q ss_pred CCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCee----ecCcchhh
Q 009231 258 QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFE----IPSGSFNI 333 (539)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~----~~~~~~~~ 333 (539)
.++-..+.. . ............... ..+..-+ ........
T Consensus 212 ----------------------~~~~~~~~~-~------------~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~ 255 (418)
T TIGR00889 212 ----------------------IFFFFSMLL-G------------APLQITNIFGNGFLH-EFGRNPEFADSFVVKNASI 255 (418)
T ss_pred ----------------------eHHHHHHHH-H------------hHHHHHHHhHHHHHH-HhcccccccchhhhhhHHH
Confidence 000000000 0 000000000000110 0100000 00011111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
...+..+ .+.......+++.+| ++.++.+.++.++.++++....... ....+.+
T Consensus 256 ~~~~~~i-----~~i~~~~~~g~l~dr---~g~r~~l~~~~~~~~v~~~l~~~~~------------------~~~~~~~ 309 (418)
T TIGR00889 256 WMSLSQF-----SEIFFILTIPFFLKR---FGIKKVMLLSLVAWALRFGFFAYGD------------------PEYFGYA 309 (418)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcC------------------cchhhHH
Confidence 1111111 111112223333334 6677788888888888766665432 0011233
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcc
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG-AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 492 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 492 (539)
.+....++.+++++...+....++.+.+|++.||+++|+.+ ...++|..+|+.+.|.+.+..+..+. .+
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~----------~~ 379 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT----------FD 379 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC----------Cc
Confidence 45556788899999999999999999999999999999997 56889999999999988765531100 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 493 YDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 493 ~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
++..|...+++.+++.++++++.++.
T Consensus 380 ~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 380 WQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56778888888788877777777644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-19 Score=186.63 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=129.0
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccc
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQL 118 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 118 (539)
...+++++ +|+|+++.+++.+.+.++..++.+++|+++||+ |||+++..++++.+++.++++...+..
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 115 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT---------- 115 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence 34456665 599999999999999999999999999999997 999999999999888887766532111
Q ss_pred cCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhh-c
Q 009231 119 RNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI-Q 197 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l-~ 197 (539)
.+...+.+.|++.|++.|...+.....+.|.+|+++ |++++++++...++|..+++.+.+.. .
T Consensus 116 ---------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~-------rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 116 ---------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE-------RGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred ---------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc-------chhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 145667888999999999999989999999999844 89999999999999999998877754 3
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 198 DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 198 ~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
.+.+||..|++.++..++..+..+...+
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4579999999988876665544444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=185.21 Aligned_cols=355 Identities=11% Similarity=0.102 Sum_probs=216.1
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchH-HHHHHHHHHHHHHHHHH
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYR-MIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~l~~ 102 (539)
+..+..+..+.++++.|+++++|+|+.++|++.++..+...+..|+.|+++||. +|||| .++.+....+++..++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 445566666778899999999999999999999999999999999999999983 48855 57778788887777776
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
...+... ......+.+.+++.+++.+...++..++..|..+++ ++|++..++.....
T Consensus 89 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~ 145 (437)
T TIGR00792 89 TTPDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGA 145 (437)
T ss_pred hCCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHH
Confidence 5331111 113445666678888888888888889989887653 34899999988888
Q ss_pred HHHHHHHHHHhhhhc-------ccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCC-CChhhHHHHHHHHHhhccCC
Q 009231 183 SASSIVAVTCIVYIQ-------DNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT-SLLPGLTQVLVASFKNRRTK 254 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~-------~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 254 (539)
++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+...++.+++++++ ++..+..+.++...+++.+.
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLL 225 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHH
Confidence 888877766655443 2468999998888877666655544444332111110 00001111111111111000
Q ss_pred CCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhh
Q 009231 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 334 (539)
.. ....++........ ... .........+ .+.....+
T Consensus 226 ~~--------------------~~~~~~~~~~~~~~---------~~~---------~~~~~~~~~~-----~~~~~~~~ 262 (437)
T TIGR00792 226 IL--------------------CLAYLFYNLAFNIK---------NGV---------QVYYFTYVLG-----DPELFSYM 262 (437)
T ss_pred HH--------------------HHHHHHHHHHHHHH---------cch---------hheeEeeecC-----ChHHHHHH
Confidence 00 00000000000000 000 0000000000 01111111
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
... ..+...+..++..++.+| .+.++.+..|.++.+++++...+.. .+.+.
T Consensus 263 ~~~-----~~i~~ii~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 313 (437)
T TIGR00792 263 GSI-----AIVAGLIGVLLFPRLVKK---FGRKILFAGGILLMVLGYLIFFFAG---------------------SNLPL 313 (437)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcc---------------------hhHHH
Confidence 110 111111223334444444 5666778888888888776655432 13344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
+....++.+++.+..++..+++..+.+| ++.+|+++|++++...+|..+|+.+.+.+.+..|
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555677888888888888888887765 5678999999999999999999999999887653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-18 Score=180.20 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=124.2
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHH-HHHHH-----HHHhhHHHHHHHHHhhccchHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNII-FIWTA-----ATNFLPIVGALLADSYVGRYRMIGF 89 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~-~~~~~-----~~~i~~~~~G~laDr~~Grk~~~~~ 89 (539)
++.....++..+++.+-...+ .+..+.+.++++.++.+.+... +.... ...++.++.|+++||+ ||||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 444444444555555554443 4555577889999887765443 22222 2236788999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccch
Q 009231 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (539)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 169 (539)
+++++.++..+++++.+.... .......++++|+++|++.+...|+..++++|.+|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATI---------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------ 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHH---------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence 999999999999876611100 00001246889999999999999999999999999844
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhc--------ccccchhhhHHHHH
Q 009231 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQ--------DNLGWKVGFGVPAV 211 (539)
Q Consensus 170 ~r~~~~~~~~~~~~lg~~~g~~i~~~l~--------~~~g~~~~f~i~~~ 211 (539)
|+++.++.....++|..+++.+++.+. +..|||+.|++...
T Consensus 151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 899999988888888888887776652 46799999987544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=180.63 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHhhcchh---hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTP---NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.++...++.-.+||-+-- ...+++.++.++|.+|.|.+.+.+.+.+.++-.+.|.++||. +.|+.+-.++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 3455577777777776543 456788889999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
..+++++++ +...+.+...+.|...|.-.|+....++.++|+++ |++..+
T Consensus 107 ~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-------RG~~~s 156 (448)
T COG2271 107 VNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-------RGTWWS 156 (448)
T ss_pred HHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-------cCceEE
Confidence 999999887 67778888899999999999999999999999944 999999
Q ss_pred HHHHHHHHHHHHHHHHh--hhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 177 WYYVFVSASSIVAVTCI--VYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~--~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
+.+.+-|+|+++.|.+. +++..+.+||..|++++++.++..++.+...+
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999 89999999999999999877665555544333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-18 Score=180.39 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=121.8
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
...+..+....+...+........+|. +++++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 334444555556666666555556665 4899999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.+++..+. . ..+++.++++|+++|+|.|...++.++++.|..|+ ++|....
T Consensus 103 ~~~~l~~~~~-~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~~ 155 (438)
T PRK10133 103 LGAALFWPAA-E-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRL 155 (438)
T ss_pred HHHHHHHHHH-h-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHHH
Confidence 9998764222 0 11678899999999999999999999999987554 2255567
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 009231 176 SWYYVFVSASSIVAVTCIVYI 196 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l 196 (539)
+.......+|..+||.+++.+
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999887654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=203.22 Aligned_cols=353 Identities=10% Similarity=0.030 Sum_probs=215.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChh--HHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT--AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~--~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
+.+...+...++.+++..+....+..++..+++.+.+ ..+++.+++.+...++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 4455555566676666666666677777777776544 468889999999999999999999997 9999999998776
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++.++..++.. ..+++.+++.|+++|++.+...|+..++++|.+|+++ |+++
T Consensus 88 ~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-------r~~~ 140 (1146)
T PRK08633 88 VGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN-------LSRA 140 (1146)
T ss_pred HHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc-------chhh
Confidence 666655544320 0157889999999999999999999999999999844 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc--------c-cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCC--C----Chhh
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDN--------L-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANT--S----LLPG 239 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~--------~-g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~--~----~~~~ 239 (539)
+++...+.++|.++||.+++++.+. . +|++.+.+.+....+..++.....++.+..++.. . ....
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKL 220 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHH
Confidence 9999999999999999999998765 2 3444433333322222222222222221111110 0 0000
Q ss_pred HHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh---hhhhc
Q 009231 240 LTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE---QASSM 316 (539)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---q~~~~ 316 (539)
..+.+....+++ .....-.... ..+...... .....
T Consensus 221 ~~~~~~~l~~~~--------------------------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 259 (1146)
T PRK08633 221 LWRNLKLLRSDR--------------------------VLWLAIIGLS---------------YFWFISQLAQANFPAYA 259 (1146)
T ss_pred HHHHHHHHhcCc--------------------------HHHHHHHHHH---------------HHHHHHHHHHHhhHHHH
Confidence 011110000000 0000000000 000000000 00011
Q ss_pred cCCCCCCeeecCc-chhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 317 DRHVTPNFEIPSG-SFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 395 (539)
Q Consensus 317 ~~~~~~~~~~~~~-~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~ 395 (539)
...++ .+.. ....+ .....+...+...+.+++.+| ...+..+.++.++++++.+.+....
T Consensus 260 ~~~~g----~s~~~~~g~~-----~~~~~ig~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~------- 320 (1146)
T PRK08633 260 KEVLG----LDNTFQVQYL-----LAASAIGIGIGSLLAGRLSGR---HIELGLVPLGALGLALSLFLLPTAP------- 320 (1146)
T ss_pred HHHhC----CCcHHHHHHH-----HHHHHHHHHHHHHHHHHHhCC---ceEccchhHHHHHHHHHHHHHHHhh-------
Confidence 11111 1111 11111 111111111223334455444 5555567777777777776666543
Q ss_pred hhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 396 INEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 396 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++..++|..+++.+.+.+.
T Consensus 321 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 321 ---------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788899999999999999999999999999999999999999988877765543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-17 Score=174.86 Aligned_cols=382 Identities=13% Similarity=0.072 Sum_probs=228.8
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh----ccchHH-HHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYRM-IGFG 90 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~----~Grk~~-~~~~ 90 (539)
+|+...+++..+...+..+.....++.|++ +.|.|..+.+.+. ..... +++.++.|.++||+ +||||. ++.+
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 455666777778888888888888999976 5599999999872 22222 36889999999993 199986 6677
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchh
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGA 170 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (539)
.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|.+|+ ++
T Consensus 88 ~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------~~ 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------EE 140 (491)
T ss_pred HHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hh
Confidence 666767766666543 1 12577788889999999999999999999999998 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcc-cccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChh-hHHHHHHHHH
Q 009231 171 LQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLP-GLTQVLVASF 248 (539)
Q Consensus 171 r~~~~~~~~~~~~lg~~~g~~i~~~l~~-~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 248 (539)
|+++.++...+.++|..+++.+.+++.+ ..|||..|++.++..++..+..+.. ++.++.+++++... ...+.+....
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~~~~~~~l~~~~ 219 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLEQAVVAPLRDFF 219 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchhhhHHHHHHHHH
Confidence 8999999999999999999999999988 5799999999887766655544432 22111111110000 0000010000
Q ss_pred hhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchh----HhhhhhccCCCCCCe
Q 009231 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT----VEQASSMDRHVTPNF 324 (539)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~q~~~~~~~~~~~~ 324 (539)
++ .. .+.-.... ..+.... ...........+
T Consensus 220 ~~--------------------------~~-~~~~ll~~---------------~l~~~~~~~~~~~~~~~l~~~~G--- 254 (491)
T PRK11010 220 GR--------------------------NN-AWLILLLI---------------VLYKLGDAFAMSLTTTFLIRGVG--- 254 (491)
T ss_pred cC--------------------------cC-HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhcC---
Confidence 00 00 00000000 0000000 000001100111
Q ss_pred eecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 009231 325 EIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDL 404 (539)
Q Consensus 325 ~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 404 (539)
.+.............+...+...+...+.+|++ .++.+.++.++.+++.+.......
T Consensus 255 -~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g-------~~~~l~i~~~l~~l~~l~~~~l~~--------------- 311 (491)
T PRK11010 255 -FDAGEVGLVNKTLGLLATIVGALYGGILMQRLS-------LFRALMIFGILQGVSNAGYWLLSI--------------- 311 (491)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 222222222211122222233333445556643 334444444444444332221110
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 009231 405 RAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWI 484 (539)
Q Consensus 405 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~ 484 (539)
...+.+.+....++..+..++..+.......+.+|++.+|+.+|+.+...++|..+++.+.|.+.+..|
T Consensus 312 ---~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-------- 380 (491)
T PRK11010 312 ---TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-------- 380 (491)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 011233334344554555555566677888888999999999999999999999988888888776442
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 009231 485 PSNINKGHYDYYYWLLTALSMANFLYYLACC 515 (539)
Q Consensus 485 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 515 (539)
+...|.+.+++.+.+++..+...
T Consensus 381 --------~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 381 --------WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888777666553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=197.61 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHH--HHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccch
Q 009231 53 TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF--GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (539)
Q Consensus 53 ~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (539)
...++..+++.+...++.+++|+++||+ ||||++.. ...+...+..+.++.. .++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~----------------------~s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL----------------------NSV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hhH
Confidence 4567788889999999999999999997 99998643 2222222222222221 167
Q ss_pred HHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHH
Q 009231 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPA 210 (539)
Q Consensus 131 ~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~ 210 (539)
+.++++|+++|++.+...|+..+++.|.+|+++ |++++++.+.+.++|.++||.++|++....+|++.|...+
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~-------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~ 181 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE-------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM 181 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc-------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 889999999999999999999999999999944 8999999999999999999999999999999999985444
Q ss_pred HHHHHHHHH
Q 009231 211 VIMLLSALS 219 (539)
Q Consensus 211 ~~~l~~~~~ 219 (539)
+..+++.++
T Consensus 182 ~~~~~~~~~ 190 (1140)
T PRK06814 182 GIAVLGWLA 190 (1140)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=168.39 Aligned_cols=380 Identities=12% Similarity=0.039 Sum_probs=268.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
.+.+.|..+. -...+.-.++...+...+..++.+++|+|+.|.+++..+-.+.+.+..++-|.+.||+ |-|++...+.
T Consensus 9 k~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~ 86 (417)
T COG2223 9 KRIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM 86 (417)
T ss_pred ccchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence 3444454444 3345555667777888888999999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++..+-.+..+++...| +.+.+++..++.|++.| .+.+..++++..+|+++ +
T Consensus 87 ~l~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~-------q 138 (417)
T COG2223 87 LLLLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK-------Q 138 (417)
T ss_pred HHHHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcccc-eehcccccccccCChhh-------h
Confidence 99999999999887433 34788999999999855 56888899999999955 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccc---chhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHH
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASF 248 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g---~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (539)
+.+.+++. ..|+|..+...+.+++....+ |+.+..+..+..++..+.+++..+..++.+++.++... ..++...
T Consensus 139 G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~~~v~ 215 (417)
T COG2223 139 GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQLKAVF 215 (417)
T ss_pred hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHHHHHh
Confidence 99999999 899999999999999988888 99998888888777777776655443332222111110 0000000
Q ss_pred hhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-------------hhhh
Q 009231 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------------QASS 315 (539)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------q~~~ 315 (539)
++ +..|..+... -...
T Consensus 216 ~~---------------------------------------------------~~~W~lsllY~~tFG~Fvgfs~~l~~~ 244 (417)
T COG2223 216 SN---------------------------------------------------KDTWLLSLLYFATFGGFVGFSAYLPMY 244 (417)
T ss_pred cC---------------------------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111111110 0111
Q ss_pred ccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 316 MDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIA 395 (539)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~ 395 (539)
....++ . ....+.......|+...+.-|+-+++.+| .+.++.+.+.+..++++..+.+...
T Consensus 245 ~~~~fg----~-----~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~f~~~~~~~~~l~~~~------- 305 (417)
T COG2223 245 LVTQFG----L-----SPVTAGLIAFLFPLIGALARPLGGWLSDR---IGGRRVTLAVFVGMALAAALLSLFL------- 305 (417)
T ss_pred HHHhcC----C-----ChhhHHHHHHHHHHHHHHHHhccchhhhh---ccchhHHHHHHHHHHHHHHHHHccc-------
Confidence 111111 1 12222234445566666677777777777 8888888888888888887776653
Q ss_pred hhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009231 396 INEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 475 (539)
Q Consensus 396 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~ 475 (539)
++.....+....+..++..++..+.-+...+.++....|+ +.|.+.|+....+++|+..-|...+...+.+
T Consensus 306 --------~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t 376 (417)
T COG2223 306 --------TGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT 376 (417)
T ss_pred --------cccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc
Confidence 0001123444444445556666666666777777777766 7889999999999999988888888877655
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 476 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
+ .+...|+++..+.+++..+.+..+++.
T Consensus 377 g---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 377 G---------------SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred c---------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 457788888889999988888777654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-18 Score=173.55 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+......+......+...+.+|.|+++++|+|..+.+++.+.+.++..++.+++|+++||+ ||||++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44555566677777788888888889999999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
++++++. .+.+.++++|+++|++.+.. +...++++|.+|+ ++|+++.++.
T Consensus 82 ~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-------~~r~~~~~~~ 131 (366)
T TIGR00886 82 LWAGLAV----------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK-------KIQGTALGLA 131 (366)
T ss_pred HHHHHHh----------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH-------hhhhHHHHHH
Confidence 8887644 15677889999999996654 5678899999998 4489999999
Q ss_pred HHHHHHHHHHHHHHhhhhcc----------cccchhhhH-HHHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQD----------NLGWKVGFG-VPAVIML 214 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~----------~~g~~~~f~-i~~~~~l 214 (539)
....++|..+++.+++.+.. +.+|++.|+ ..+....
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL 178 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence 88888888888877766543 348999994 4344433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=179.45 Aligned_cols=367 Identities=14% Similarity=0.091 Sum_probs=231.5
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCC
Q 009231 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (539)
Q Consensus 46 ~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (539)
++++++.++-+++.+.+..++.++++.+|+++||+ |-|+++..+.++.+++.++...+..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 36899999999999999999999999999999997 9999999999999999999998772
Q ss_pred CccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc-ccchh
Q 009231 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN-LGWKV 204 (539)
Q Consensus 126 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~g~~~ 204 (539)
.+.+.+++.|+++|++.|...|+...+.+++.|+ ++|++..++.+.+..+|.+++..++|++.+. .||++
T Consensus 126 --~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 126 --IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred --hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 2344678999999999999999999999999999 4599999999999999999999999999988 99999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhh
Q 009231 205 GFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNK 284 (539)
Q Consensus 205 ~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (539)
+|++.+.+.++..++++......+.+++.-++ .+..++ .+++..... +...+.+++...+
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-~El~~I----~~~k~~~~~-----------~~~~~vP~~~i~t---- 256 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-KELKYI----EKGKSEAHV-----------KKKPPVPYKAILT---- 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-HHHHHH----Hhccccccc-----------CCCCCCCHHHHHc----
Confidence 99999998888777776655543333322111 110111 001000000 0001111111100
Q ss_pred hhhhcCCCCCCCCCCCCCCCccchhH-----------h--hhhhccCCCCCCeee-cCcchhhhhHHHHHHHHHHHhHHH
Q 009231 285 ACMAKHPEQDLTPDGRASNPNSLCTV-----------E--QASSMDRHVTPNFEI-PSGSFNIFAILTLTIWIGLYDRAV 350 (539)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--q~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~~~l~~~~~ 350 (539)
.+..|.+... . ...++..-+ ++.+ ..+.+..+..+...+.-.+.+.+.
T Consensus 257 ----------------s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~f~v~~~G~~salP~l~~~~~k~~~g~ls 318 (466)
T KOG2532|consen 257 ----------------SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--GFDVRETGFLSALPFLAMAIVKFVAGQLS 318 (466)
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--CCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111110 0 222222211 1112 133445555554444444433333
Q ss_pred HHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 009231 351 LPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 430 (539)
Q Consensus 351 ~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~ 430 (539)
+.+..| .-. .+..++..=.++....++.++.+++.. +... +....++..+.+....+
T Consensus 319 D~l~~~-~ls-~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------~~~~-~~a~~~l~~~~~~~g~~ 375 (466)
T KOG2532|consen 319 DRLTFR-ILS-ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------DEHR-LLAVILLTIAIGLSGFN 375 (466)
T ss_pred HHHhhc-cCc-hHhHHHHHHhHHHHHHHHHHHeeeecC--------------------CCcc-hHHHHHHHHHHHHcccc
Confidence 333333 111 001222223555555666666665553 1112 22222333334433333
Q ss_pred hhhhhhhhcc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 009231 431 IGQTEFYYTE-LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509 (539)
Q Consensus 431 ~~~~~~~~~~-~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 509 (539)
..+...-... +|. ..+..+|+.++...+.++++|.+.+.+.+ - + +......+|++.+++.+++.+
T Consensus 376 ~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-----------~-t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT-D-----------N-TREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred hhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-----------C-CHHHHHHHHHHHHHHHHHhch
Confidence 3333333344 655 68999999999999999999999887653 0 1 112346789999999999988
Q ss_pred HHHHHhh
Q 009231 510 YYLACCK 516 (539)
Q Consensus 510 ~~~~~~~ 516 (539)
+|.++.+
T Consensus 442 ~f~~f~s 448 (466)
T KOG2532|consen 442 IFLFFGS 448 (466)
T ss_pred heeEeec
Confidence 7777653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-16 Score=165.79 Aligned_cols=174 Identities=13% Similarity=0.128 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.+..++...+...+.+....+.+ +.+++++|+|..+.|++.+.+.++..++.+++|++.||+ ||||++..++++++++
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 34455555555566654444445 556889999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+...+.. ..+++.+++.|++.|+|.|...+..++++.+..|++ +|++..++
T Consensus 82 ~~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-------~~~~~~~~ 134 (410)
T TIGR00885 82 AFLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-------TATRRLNL 134 (410)
T ss_pred HHHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-------HHHHHHHH
Confidence 888654431 126778899999999999999999999999988873 47888999
Q ss_pred HHHHHHHHHHHHHHHhhhhccc--------------------------ccchhhhHHHHHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDN--------------------------LGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~--------------------------~g~~~~f~i~~~~~l~~~~~~ 220 (539)
.+...++|..+||.+++.+... .+||++|.+.+.+.++..++.
T Consensus 135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876422 369999988877655544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-16 Score=161.60 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh----ccchH-HHHHHHHHHHHH
Q 009231 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYR-MIGFGCFTCLLG 97 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~----~Grk~-~~~~~~~~~~~~ 97 (539)
+...+...+.+.-....+|.|++ +.|+|.++.|++...... .+..++.|+++||+ +|||| .+..+.+..+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 34556666777777788999997 559999999999766665 68999999999995 17776 688878888777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..++++.. + ..+.+.+.+..++.++..+...|+..+++.|.+|++ +|+++.++
T Consensus 82 ~~~l~~~~--~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~r~~~~~~ 134 (402)
T PRK11902 82 IAAMAFCP--P------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE-------ERGAGAAV 134 (402)
T ss_pred HHHHHhcC--c------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhHHHHH
Confidence 77766542 0 114666666666778888888999999999999884 48999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccc-ccchhhhHHHHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~-~g~~~~f~i~~~~~l~~~~~ 219 (539)
...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875 59999999988766554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-17 Score=166.72 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=115.0
Q ss_pred hHHHHhhhhcc--CChhHHHHHHHHH-----HHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 009231 39 NMILYLCREYN--METTAATNIIFIW-----TAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (539)
Q Consensus 39 ~l~~yl~~~lg--~s~~~~~~i~~~~-----~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (539)
+...++.++.. .++.+.+.+.+.. .+...++.++.|+++||+ ||||+++.++++..++..+++++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 91 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI- 91 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence 45555555543 4455555544432 223346789999999997 99999999999999999888876522110
Q ss_pred CCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 009231 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (539)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~ 191 (539)
.......+++.|+++|++.+...+...+++.|.+|+++ |++..++.+.+..+|..+++.
T Consensus 92 --------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 92 --------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK-------RGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred --------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc-------chHHHHHHHHHHHHHHHHHHH
Confidence 00012357888999999999999999999999998844 899999999999999999998
Q ss_pred Hhhhhc--------ccccchhhhHHHHHHHHHHHH
Q 009231 192 CIVYIQ--------DNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 192 i~~~l~--------~~~g~~~~f~i~~~~~l~~~~ 218 (539)
+.+.+. +..+||+.|.+.++..+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 776543 356899999887765554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=167.50 Aligned_cols=415 Identities=12% Similarity=0.059 Sum_probs=242.5
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHh----hccchHHHHHH-HH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADS----YVGRYRMIGFG-CF 92 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr----~~Grk~~~~~~-~~ 92 (539)
++..+....+.-++++-...++++.|+ +++|.+...++.+..+..+...+.+|+.|+++|| + ||||.++.+ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 455555566667788888888888886 6899999999999999999999999999999995 6 999998775 55
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
...++..+++++.++....+ ++.+ ...........+++..+.-++....++...++++|.+|+++ ++++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~---~~~~---~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-----~~~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFG---DNLD---KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-----RRTR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhcc---cccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-----HHHH
Confidence 56666666666542221000 0000 00000011334445555667888888889999999999865 3356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--ccc-------------ccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCC--
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYI--QDN-------------LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS-- 235 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l--~~~-------------~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 235 (539)
.++++.....++|..+|+.++++. .+. .+.+..|++.++..++..++.....++.+..++++.
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~ 231 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence 899999999999999999988764 211 157889999888888777776665555432111110
Q ss_pred -Ch--------hhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCcc
Q 009231 236 -LL--------PGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306 (539)
Q Consensus 236 -~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (539)
+. ....+.+....+ ...+.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~i~~~~~-------------------------------------------------~mP~~m~~ 262 (477)
T TIGR01301 232 SEAAPPSKHGEEAFFGELFGAFK-------------------------------------------------YLPRPVWI 262 (477)
T ss_pred hhcccccccchhhhHHHHHHHHH-------------------------------------------------HCCHHHHH
Confidence 00 000000000000 01111222
Q ss_pred chhHh-------------hhhhccCCCCCCeeecCcch------hhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCch
Q 009231 307 LCTVE-------------QASSMDRHVTPNFEIPSGSF------NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLK 367 (539)
Q Consensus 307 ~~~~~-------------q~~~~~~~~~~~~~~~~~~~------~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~ 367 (539)
+|.+| ....+.+....+-.-....+ .......-.+...+.+.++.++.+|.++ ++
T Consensus 263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~------~k 336 (477)
T TIGR01301 263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA------GK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch
Confidence 22222 00001100000000000000 1111111111111333334444444321 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc--cccch-HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc-
Q 009231 368 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA--VVQMS-AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK- 443 (539)
Q Consensus 368 ~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~- 443 (539)
..-.++.++.++++....+.+.. .++.+..++.+. .++.. .+..+..+.+.|+.-...+...++++.+..|+
T Consensus 337 ~~~~~s~~~~~~~l~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 337 RLWGIVNIILAICLAATVLVTYV----AKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh----hhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 44477888888887777665410 000000000000 01112 35566778889999999999999999999995
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 444 -SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 444 -~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
+..|.++|+.|++..+...+.....+.+.+..+. +...++.+-++..+++.+..++..++.
T Consensus 413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4559999999999999999999888876655531 123456666667777777666655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=167.84 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=121.7
Q ss_pred chhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 009231 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (539)
..+.+| .+.+++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++.++.+...++...+ .+.
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~---------- 85 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP---------- 85 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc----------
Confidence 344444 56789999999999999999999999999999999997 99999999998888777665 333
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
+.+.+++.|++.|+|.+...+...+++.|.+|+ + |+++.++++...++|..+++.+++.
T Consensus 86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~g~~i~~~~~~~ 144 (355)
T TIGR00896 86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R-------VGLMTGLYSMALMGGAALAAAATVP 144 (355)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h-------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999998888888888887753 2 7999999999999999999999888
Q ss_pred hcccc--cchhhhHHHHHHHHH
Q 009231 196 IQDNL--GWKVGFGVPAVIMLL 215 (539)
Q Consensus 196 l~~~~--g~~~~f~i~~~~~l~ 215 (539)
+.++. +||+.|.+.+...++
T Consensus 145 l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 145 LAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH
Confidence 87664 399988876654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-17 Score=165.79 Aligned_cols=158 Identities=17% Similarity=0.089 Sum_probs=120.3
Q ss_pred chhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh----ccchHH-HHHHHHHHHHHHHHHHHhhccCCC
Q 009231 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY----VGRYRM-IGFGCFTCLLGMVLLWSTTILPGA 110 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~----~Grk~~-~~~~~~~~~~~~~l~~~~~~~~~~ 110 (539)
+.....+.+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||. ++.+.+..++....+++.. .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c-
Confidence 33444455567889999999999655 344444 88999999996 489997 4566666666666665433 1
Q ss_pred CCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 009231 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190 (539)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~ 190 (539)
..+.+.+....++.+++.+...++..+++.|.+|+ ++|+++.++...+.++|.++++
T Consensus 80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~ 136 (356)
T TIGR00901 80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLSG 136 (356)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHHH
Confidence 12455566666777888888889999999999988 4489999999999999999999
Q ss_pred HHhhhhccccc--------chhhhHHHHHHHHHHHHHHHh
Q 009231 191 TCIVYIQDNLG--------WKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 191 ~i~~~l~~~~g--------~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.+++++.++.+ ||..|++.++..++..+..+.
T Consensus 137 ~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 137 SLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 999999988876665554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=168.38 Aligned_cols=358 Identities=13% Similarity=0.060 Sum_probs=199.7
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHHH-HHHHHHHHHHHH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMI-GFGCFTCLLGMV 99 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~~-~~~~~~~~~~~~ 99 (539)
+..+..++.+..+.++++.|+++.+|+++.++|.+.....+...+..++.|+++||. +||||.. +.+.+...+...
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 356667777777888899999999999999999999999999999999999999994 3777754 555554444444
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
++.. . |.. ...+......++...+.+++.+...++..++..+..++.+ +|.+..++..
T Consensus 95 ~~~~-~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------~r~~~~~~r~ 152 (448)
T PRK09848 95 LVFW-V--PTD-------------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ------SRARLGAARG 152 (448)
T ss_pred HHHh-C--cCC-------------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH------HHHHHHHHHH
Confidence 4321 1 110 0001122334445567788888888888888777776643 3777766655
Q ss_pred HH-----HHHHHHHHHHHhhhhcccc--cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhcc
Q 009231 180 VF-----VSASSIVAVTCIVYIQDNL--GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRR 252 (539)
Q Consensus 180 ~~-----~~lg~~~g~~i~~~l~~~~--g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (539)
++ .+++..++|.+.+...... +|.....+.++..++..++.....++..+++.+ + ....+.+....+++.
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~l~~n~~ 229 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-Q--PSLKISLQTLKRNRP 229 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-C--CCHHHHHHHHhCCch
Confidence 43 3466666776655432211 121111122222222222222222221111111 1 111222222222211
Q ss_pred CCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchh
Q 009231 253 TKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFN 332 (539)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 332 (539)
+... .....+........ ... ........++ .+. ..
T Consensus 230 f~~~--------------------~~~~~~~~~~~~~~---------~~~---------~~~~~~~~~g----~~~-~~- 265 (448)
T PRK09848 230 LFML--------------------CIGALCVLISTFAV---------SAS---------SLFYVRYVLN----DTG-LF- 265 (448)
T ss_pred HHHH--------------------HHHHHHHHHHHHHH---------hhh---------heeeEeeecC----ChH-HH-
Confidence 1000 00000000000000 000 0000000010 111 11
Q ss_pred hhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchH
Q 009231 333 IFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSA 412 (539)
Q Consensus 333 ~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 412 (539)
.........+...+..++..|+.+| .+.++.+.+|.++.+++.+.+.+.. +.+.
T Consensus 266 ---~~~~~~~~~~~~~~~~~l~~~l~~r---~g~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~ 319 (448)
T PRK09848 266 ---TVLVLVQNLVGTVASAPLVPGMVAR---IGKKNTFLIGALLGTCGYLLFFWVS--------------------VWSL 319 (448)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHHHcC--------------------chhH
Confidence 1111111111122234555565555 7777888999988888876665432 1245
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccCCch-------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 413 MWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS-------MSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 413 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
+.++...++.++|++...+...++..+.+|++ .+|.++|++++.+.+|..+|+.+.+.+.+..|
T Consensus 320 ~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 320 PVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666677889999999999999998888765 46999999999999999999999998876654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-16 Score=162.40 Aligned_cols=383 Identities=16% Similarity=0.098 Sum_probs=218.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 009231 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (539)
....++.-+.+....++++.|++ +.|+|..|+|.+.+...++..+++++.|+++||+..+||.+.+..++.++...+..
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33555555666667789999997 57899999999999999999999999999999974567777777777666655555
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
..+ +++.++...++..+......|...++..+...+++ .-++-....+
T Consensus 87 ~~~-----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~---------~~YG~iRlwG 134 (400)
T PF03825_consen 87 FSS-----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG---------KDYGRIRLWG 134 (400)
T ss_pred Hhc-----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc---------CCCCcchhhh
Confidence 443 55656666667777777777777777777665422 2222233334
Q ss_pred HHHHHHHHHH-hhhhcccc---cchhhhHHHHHHHHHHHHHHHhcCCceee-cCCCCCChhhHHHHHHHHHhhccCCCCC
Q 009231 183 SASSIVAVTC-IVYIQDNL---GWKVGFGVPAVIMLLSALSFFLASPFYVK-SKANTSLLPGLTQVLVASFKNRRTKLPT 257 (539)
Q Consensus 183 ~lg~~~g~~i-~~~l~~~~---g~~~~f~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 257 (539)
++|.+++.+. ++++.... +....+++.+...++.....+. .|+.+. ++++++..+...+.....+++++.
T Consensus 135 SiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~---- 209 (400)
T PF03825_consen 135 SIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLLGLDALKLLKNPRF---- 209 (400)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcccccchHHHHHhcCccH----
Confidence 5555555332 22222222 2334555555443333322222 233221 111111100000000111111110
Q ss_pred CCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHH
Q 009231 258 QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAIL 337 (539)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (539)
..++-..+.... .....+.....++....+ .+. -...
T Consensus 210 ---------------------~~Fll~~~l~~~-------------~~~~~~~f~~~yl~~~gg----~~~-----~~~g 246 (400)
T PF03825_consen 210 ---------------------LVFLLAAFLIGI-------------SHAAYYTFFSIYLQELGG----YSG-----STIG 246 (400)
T ss_pred ---------------------HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHccc----chh-----hHHH
Confidence 000000000000 000000000111111110 000 0111
Q ss_pred HHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc-hHHHHH
Q 009231 338 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM-SAMWQL 416 (539)
Q Consensus 338 ~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~ 416 (539)
.......+.+.......+|+.+| ++.++.+.++.+..++-..+.+..+ .+.. ....+.
T Consensus 247 ~~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~------------------~~~~~~~~~~~ 305 (400)
T PF03825_consen 247 ILWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFS------------------DPWPFIVALQL 305 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhc------------------CCcHHHHHHHH
Confidence 11122233444455556777777 8999999999999999998888773 0000 111123
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhH
Q 009231 417 PYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDY 495 (539)
Q Consensus 417 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~-~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 495 (539)
+..++.|+..++...+...++.+.+|++.|++++|+++.. .++|+.+|..+.|.+.+..+.++. ..+..
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~----------~~~~~ 375 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM----------FDWSA 375 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh----------hhHHH
Confidence 3345789999999999999999999999999999998875 679999999999988876542211 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 009231 496 YYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 496 ~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
.|.+.+++.++..+++++..|+
T Consensus 376 ~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 5666677777777777766554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=167.52 Aligned_cols=357 Identities=8% Similarity=0.051 Sum_probs=204.7
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHH-HHHHHHHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRM-IGFGCFTCLLGMVL 100 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~-~~~~~~~~~~~~~l 100 (539)
..+..++.+..+..+++.|+++++|+|+.++|.+..+..+...+..|+.|+++||. +||||- ++.+.+..++...+
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 44556666677778999999999999999999999999999999999999999993 388554 55676666666655
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
+.... .. ........+++...+.+.+..+......++.+|..++++ +|++..++...
T Consensus 97 ~f~~p---~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~------eR~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTP---DF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR------ERHSLQSWRFA 153 (444)
T ss_pred HHhCC---CC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH------HHHHHHHHHHH
Confidence 44322 10 001134445555666677777777778899999886643 48888888888
Q ss_pred HHHHHHHHHHHHhhhhcc-------cccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 181 FVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~-------~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
..++|..+++.+...+.. ..+|+..+.+.+++.++..++.+...++..++++ +++ ....+.+....+++.+
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~-~~~-~~~~~~~~~~~~n~~~ 231 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV-DNS-SSVWKDLKLLLGNSQW 231 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC-cCC-CCHHHHHHHHhCCchH
Confidence 888888887765433321 3467777777776665555444433332211111 111 1122222222222211
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhh
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 333 (539)
. .+--.... ................ ...........
T Consensus 232 ~--------------------------~l~~~~~~-----------------~~~~~~~~~~~~~y~~-~~~~~~~~~~~ 267 (444)
T PRK09669 232 R--------------------------IMFIFNVV-----------------LLTAVVTRGGATLYYV-NYVLLRPDLAT 267 (444)
T ss_pred H--------------------------HHHHHHHH-----------------HHHHHHHHhhhhheee-eeecCCHHHHH
Confidence 0 00000000 0000000000000000 00000111111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
.......+.. .+..++..++.+| .+.++.+.++.++.++......... +.+.+
T Consensus 268 ~~~~~~~i~~----ii~~~~~~~l~~r---~gk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 320 (444)
T PRK09669 268 LFLVTGMIAG----LFGALLSERLLGK---FDRVRAFKWTIVAFVILSALIFFIP--------------------PSNVW 320 (444)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhC--------------------cchHH
Confidence 0000011111 1122233333333 4555666666665554433332221 11344
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITKR 477 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~ 477 (539)
.+.+..++.+++.+...+...+++.+.++ ++..|...|++++...+|..+|+.+.+.+.+..|-
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556678899999999999999988876 34467789999999999999999999998876653
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=164.50 Aligned_cols=386 Identities=12% Similarity=0.030 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHH
Q 009231 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (539)
Q Consensus 56 ~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (539)
+.+.+++.+++.++..++|+++||+ |||..++++.++..++..+..++-..+ ...++++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li~ 121 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLIL 121 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHH
Confidence 4566789999999999999999997 999999999999888888887765222 5788999
Q ss_pred HHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh--hhcccccchhhhHHHHHHH
Q 009231 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV--YIQDNLGWKVGFGVPAVIM 213 (539)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~--~l~~~~g~~~~f~i~~~~~ 213 (539)
+|++.|+..|......+-++.|..|+ +.||........+..+|..+|..++. .+.+...|++.+....+..
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~sP~-------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEISPK-------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcChh-------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999 44899999999999999999865542 2345567999888877755
Q ss_pred HHHHHHHHh--cCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchh-hhccCCCCcccCCCcchhhhhhhhhhcC
Q 009231 214 LLSALSFFL--ASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEE-MYHHGKGSMRLMPSENLRFLNKACMAKH 290 (539)
Q Consensus 214 l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (539)
++..+.... .+|++--. ++++..++.+.+.....+..... +.+. ..+.++.. ....+...+.+..
T Consensus 195 ~~~l~~l~~~PESPk~Ll~--~k~~~~~A~~sl~~y~G~~~~~~---~~e~~~~e~~~~~--~~~~~~~sl~~~~----- 262 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLI--KKGDEEEARKALKFYRGKEDVEA---EIEEMLREIEEEE--LEKKKQISLRQLL----- 262 (485)
T ss_pred HHHHHHHhcCCCCcchHHH--HcCCHHHHHHHHHHHhCCCcchh---HHHHHHHHHHHhc--cccccCCcHHHHh-----
Confidence 554443322 23333211 13344445555443332211000 1111 11111100 0000111111100
Q ss_pred CCCCCCCCCCCCCCccchh---HhhhhhccCCCC------CCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCC
Q 009231 291 PEQDLTPDGRASNPNSLCT---VEQASSMDRHVT------PNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKP 361 (539)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~---~~q~~~~~~~~~------~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~ 361 (539)
+.+..+...+..+. .+|..+.+.-.. ....++...-...|.....+..+ ...+...+.+|.+
T Consensus 263 -----~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~-~t~~~~~lid~~g--- 333 (485)
T KOG0569|consen 263 -----KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLL-STLVSPFLIDRLG--- 333 (485)
T ss_pred -----cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC---
Confidence 00001111111111 112221111000 00002222222222222222222 2223344566644
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHH-HHHHHHHHHH-HHHHhhhhhhhhhc
Q 009231 362 CQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQ-LPYLVLSGLA-MAFNMIGQTEFYYT 439 (539)
Q Consensus 362 ~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l-~~~~~l~g~g-~~~~~~~~~~~~~~ 439 (539)
++..+..++.++.+..+++.......+... + ..++. +...+++.+. .....|..+-+..|
T Consensus 334 ----RRpLll~~~~~~~~~~~~~~~~~~l~~~~~-------------~-~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 334 ----RRPLLLISLSLMAVALLLMSIALFLSNSFG-------------S-WLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------h-HHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 445788888888887777766552222110 0 11122 2223333333 33446777778889
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009231 440 ELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 519 (539)
Q Consensus 440 ~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 519 (539)
.+|++.|..++++..+.+++.+++-....+.+.+..| .+.|..+.+.+++..+..|...+++|
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999999999998887664 25577778888888888888889998
Q ss_pred cCCCCc
Q 009231 520 PFKGRV 525 (539)
Q Consensus 520 ~~~~~~ 525 (539)
+|+.+|
T Consensus 459 gr~~~e 464 (485)
T KOG0569|consen 459 GRTPYE 464 (485)
T ss_pred CCCHHH
Confidence 887654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=164.10 Aligned_cols=408 Identities=12% Similarity=0.046 Sum_probs=234.1
Q ss_pred cchhhHHHHhhhh-----ccCCh--hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 009231 35 GFTPNMILYLCRE-----YNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (539)
Q Consensus 35 ~~~~~l~~yl~~~-----lg~s~--~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~ 107 (539)
+....+..++++. ...+. .+.+++.++..+++.++.+++|+++|++ |||++++++.+++.+|.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 4555555555553 22222 3458999999999999999999999997 999999999999999999999988
Q ss_pred CCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 009231 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (539)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 187 (539)
+...++++|++.|+|.|+.....+.+++|..|+ +.|+...+.++...++|..
T Consensus 141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGIL 192 (513)
T ss_pred ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998 4599999999999999999
Q ss_pred HHHHHhhhhccc--ccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhc
Q 009231 188 VAVTCIVYIQDN--LGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYH 265 (539)
Q Consensus 188 ~g~~i~~~l~~~--~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 265 (539)
++.. .++..++ .+||..+.+..+..++..+. ....|+.++.-.+.....+..+.+......... +.+...+
T Consensus 193 ~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~-----~~~~~~~ 265 (513)
T KOG0254|consen 193 LGYC-INYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPE-----DVEVELE 265 (513)
T ss_pred HHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCc-----chHHHHH
Confidence 9964 4444444 48998888877665555555 333332221111123333334444333221111 1111110
Q ss_pred cCC---CCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCc---cchhHhhhhhccCCCCC------CeeecCcchhh
Q 009231 266 HGK---GSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPN---SLCTVEQASSMDRHVTP------NFEIPSGSFNI 333 (539)
Q Consensus 266 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~~~~~~~~------~~~~~~~~~~~ 333 (539)
..+ ......+.....+.+.. .+...++.. .+...||..+.+..... ........ .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~ 332 (513)
T KOG0254|consen 266 LLKIKLLVEAEVAEGKASWGELF-----------SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--F 332 (513)
T ss_pred HHHHHHHHhhhcccccccHHHhc-----------CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--H
Confidence 000 00000000000000000 000000000 01111122222111100 00011110 1
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
.......+...+...+...+.+|. +++..+..|...+.+++++++.......+. .+ ........
T Consensus 333 ~~~~~~~~v~~~~t~~~~~lvd~~-------gRr~lll~s~~~m~~~~~~~~~~~~~~~~~---~~------~~~~~~~~ 396 (513)
T KOG0254|consen 333 LASIILGVVNFLGTLVATYLVDRF-------GRRKLLLFGAAGMSICLVILAVVGVFALYY---PN------SSKGAGWL 396 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHhHHHHHHHHHHHHHHHHHhccC---CC------cccchhHH
Confidence 111111111111122223456664 455689999999999988887665111100 00 00111222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcch
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 493 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 493 (539)
.+...++..........|....+..+..|.+.|+++.++....+++.+.+-....+......+ .
T Consensus 397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~----------------~ 460 (513)
T KOG0254|consen 397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG----------------I 460 (513)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------c
Confidence 223223333333444455555677889999999999999999999888877666555442210 1
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhhhcccCCCCc
Q 009231 494 DYYYWLLTALSMANFL-YYLACCKAYGPFKGRV 525 (539)
Q Consensus 494 ~~~f~~~~~~~~v~~~-~~~~~~~~~~~~~~~~ 525 (539)
...|+.+++.+.+... ..+...+++++++.||
T Consensus 461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~slee 493 (513)
T KOG0254|consen 461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEE 493 (513)
T ss_pred cchHHHHHHHHHHHHHHHheEEcccCCCCcHHH
Confidence 2345555666666666 6777888998888776
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=163.32 Aligned_cols=372 Identities=10% Similarity=0.029 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhcc-----chHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RYRMIGFGCFT 93 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G-----rk~~~~~~~~~ 93 (539)
...+....+...+. +.+...++.++++++|+|.++.+...+...+...+-++ +|.++||+ + ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34445578888888 88888999999999999999999998888888888665 99999997 7 77777777766
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
.. ...+..++. + ........+.+.+.+++.+....+.-++..|..+ +++ +.++.
T Consensus 105 ~~-~~~~~~l~~--~------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~----~~~~~ 158 (468)
T TIGR00788 105 GS-AILYGLLPG--K------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP----SAGPS 158 (468)
T ss_pred HH-HHHHHhccc--c------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----CcCCC
Confidence 53 112222211 0 0123334446788999999999999999999998 443 33566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceee-cCCCCCCh---------hhHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK-SKANTSLL---------PGLTQV 243 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~ 243 (539)
..++.+.+.++|..+|+.++|.+.+..+|+..|++.+...++..+..... ++.++ ..++..+. ....+.
T Consensus 159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (468)
T TIGR00788 159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLEMNMALLTLGVLAN 237 (468)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccchhhhhhhhhhHHHH
Confidence 67777778899999999999999999999999999888776664433332 22210 01110000 000000
Q ss_pred HHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhh-hcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCC
Q 009231 244 LVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM-AKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTP 322 (539)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 322 (539)
.....++ .+.. ...+....++-..+. ..... ......+. ... ..++
T Consensus 238 ~~~~~~~------------l~~~------l~~~~i~~~l~fifl~~~~~~------~~~~~~f~-------~~~-~~lG- 284 (468)
T TIGR00788 238 VKVQILG------------LRGA------IQLLEIAKPLIFIFLSYANLP------GASGSVFC-------ATT-QCLP- 284 (468)
T ss_pred HHHHHHH------------HHHH------HhcHHHHHHHHHHHHHHhhcC------CCCceeEE-------EEc-ccCC-
Confidence 0000000 0000 000000000000000 00000 00000000 000 0111
Q ss_pred CeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 009231 323 NFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISD 402 (539)
Q Consensus 323 ~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 402 (539)
.++...+.+... ..+.+.+...+.+|+.+| .+.++.+.++.++.+++.+.......+.+ ..-|
T Consensus 285 ---~s~~~~G~~~~~-----~~v~~i~g~~~~~~~~~~---~~~r~~l~~~~~l~~~~~~~~~~l~~~~~---~~~g--- 347 (468)
T TIGR00788 285 ---GGPSFSGMSKVV-----GNLGSLCGVGGYDRFLKT---FPYRLLFGVTTLLYTLSSLFDLILVKRWN---LAFG--- 347 (468)
T ss_pred ---CCcchhhhHHHH-----HHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHhCceeeeeccc---cccC---
Confidence 222222222111 112222233445565555 88888899998888887655321110000 0000
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 403 DLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 403 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
. .+.+++....++.+++.++...+...++.+.+|++.+|+..|+.+...++|..+++.+.+.+.+..+
T Consensus 348 -----i-~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 348 -----I-SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred -----C-CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 1233444556778888888889999999999999999999999999999999999988888776553
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=163.73 Aligned_cols=356 Identities=11% Similarity=0.072 Sum_probs=204.8
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHH----hhccc-hHHHHHHHHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGR-YRMIGFGCFTCLLGMV 99 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laD----r~~Gr-k~~~~~~~~~~~~~~~ 99 (539)
..+..++.+..+.++++.|+++.+|+++.++|.+..+..+...+..|+.|+++| |+ || |+-++.+.+..+++..
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHH
Confidence 455566777778899999999999999999999999999999999999999999 65 99 4556667777777766
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
++......+ ++.....+.+..++..++......+..++.+|..+++ ++|.+..++..
T Consensus 93 llf~~p~~~-----------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~------~eR~~l~~~~~ 149 (473)
T PRK10429 93 LLFSAHLFE-----------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK------REREQLVPYPR 149 (473)
T ss_pred HHHcCCCCC-----------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH------HHHHHHHHHHH
Confidence 554221001 0112333445556677888888888999999988654 34899888877
Q ss_pred HHHHHHHHHHHHHhhhhcc-------cccchhhhHHHHHHHHHHHHHHHhcCCceeecC---CCCCChhhHHHHHHHHHh
Q 009231 180 VFVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---ANTSLLPGLTQVLVASFK 249 (539)
Q Consensus 180 ~~~~lg~~~g~~i~~~l~~-------~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 249 (539)
...++|+.+.+.+...+.+ ..+|+....+.+++.++..+..+...++.++.+ +++++.....+.+....+
T Consensus 150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (473)
T PRK10429 150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYK 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhc
Confidence 7778876666554433211 235666666666655554444444333321111 000010111121111111
Q ss_pred hccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhh-hccCCCCCCeeecC
Q 009231 250 NRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQAS-SMDRHVTPNFEIPS 328 (539)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~~~~~ 328 (539)
++.+ ..+--... ...... +.. ...........-..
T Consensus 230 n~~~--------------------------~~ll~~~~----------------~~~~~~--~~~~~~~~y~~~y~~~~~ 265 (473)
T PRK10429 230 NDQL--------------------------SCLLGMAL----------------AYNIAS--NIINGFAIYYFTYVIGDA 265 (473)
T ss_pred CHHH--------------------------HHHHHHHH----------------HHHHHH--HHHhhheeeEEEEECCCH
Confidence 1110 00000000 000000 000 00000000000001
Q ss_pred cch---hhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 009231 329 GSF---NIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLR 405 (539)
Q Consensus 329 ~~~---~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 405 (539)
... ..+..+..++ ..+++.++.+| .+.++.+.++.++.+++.+...... .
T Consensus 266 ~~~~~~~~~~~i~~ii--------~~~~~~~l~~r---~gkk~~~~~~~~~~~~~~~~~~~~~-----------~----- 318 (473)
T PRK10429 266 DLFPYYLSYAGAANLV--------TLILFPRLVKS---LSRRILWAGASIFPVLSCGVLLLMG-----------L----- 318 (473)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHH---cCcHHHHHHHHHHHHHHHHHHHHHh-----------c-----
Confidence 111 1111111222 22333444444 5666677777776666655543321 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 406 AVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 406 ~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
..+.+.+.+++..++.+++.+..++...++..+.++ ++..|.+.|.+++...+|..+++.+.+.+.+..|
T Consensus 319 -~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 319 -AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred -cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 001134455556677889999999998888888876 3446679999999999999999999999887664
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=159.02 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=137.6
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCC
Q 009231 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (539)
Q Consensus 46 ~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (539)
++++-+.++.|++..+..+...+..++.|.+.||+ |+|-.+++|+.++...+++.++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 35677899999999999999999999999999996 999999999999999999999877
Q ss_pred CccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhh
Q 009231 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (539)
Q Consensus 126 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~ 205 (539)
++++++++|.+||+|.++..++..++++|.+|++++ |++++|..-....+|-.+||..+|.+-+..|+..+
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e------r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE------RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh------hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 677899999999999999999999999999999664 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 009231 206 FGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 206 f~i~~~~~l~~~~~~~~~~~ 225 (539)
|.+.+.+.++-..+.++..+
T Consensus 229 FlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 99999988887766555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=156.23 Aligned_cols=154 Identities=13% Similarity=0.055 Sum_probs=134.9
Q ss_pred chhhHHHHhhhhccCChhH-HHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009231 36 FTPNMILYLCREYNMETTA-ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~-~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (539)
..+++..|+.+++|++.+| .|.+.+++..++.++.+++|+++||+ |.||++.++.+.+.+..++.+++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 4467888999999999999 99999999999999999999999997 999999999999999999999877
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
++..+.+.|++.|++.|... +...++..++|+ ++|+++.++...+.++|.++++.+++
T Consensus 114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999 999999999999 56999999999999999999999999
Q ss_pred hhcccccchhhhHH---HHHHHHHHHHHHHh
Q 009231 195 YIQDNLGWKVGFGV---PAVIMLLSALSFFL 222 (539)
Q Consensus 195 ~l~~~~g~~~~f~i---~~~~~l~~~~~~~~ 222 (539)
+ ...+||++-+.+ ......+++++.++
T Consensus 172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 172 L-LVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred H-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9 456788875444 34444455554444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=151.16 Aligned_cols=339 Identities=14% Similarity=0.032 Sum_probs=201.7
Q ss_pred ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCc
Q 009231 48 YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATW 127 (539)
Q Consensus 48 lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (539)
.+-+..-+|.+-+.|.+...+..+..|.++||+ |||.++++|++..++...+.+.+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~---------------------- 119 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR---------------------- 119 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 344567789999999999999999999999998 999999999999999888888777
Q ss_pred cchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc---cccchh
Q 009231 128 SQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD---NLGWKV 204 (539)
Q Consensus 128 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~---~~g~~~ 204 (539)
|+..+.++|++.|+.-|-. ....++++|.+++++ |+.+++.......+|.++||.++|++.+ ..|. .
T Consensus 120 -~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~-------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~-~ 189 (451)
T KOG2615|consen 120 -NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY-------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGS-Y 189 (451)
T ss_pred -HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh-------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhcc-C
Confidence 6766777799999987764 667899999999954 8999999999999999999999999987 3332 2
Q ss_pred hhHHHHH-HHHHHHH---HHHhcCCce-eecCCC--CCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCc
Q 009231 205 GFGVPAV-IMLLSAL---SFFLASPFY-VKSKAN--TSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSE 277 (539)
Q Consensus 205 ~f~i~~~-~~l~~~~---~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (539)
+|..+.. ..+++.. .+....|+. +.++++ +++..+....-....+-.+. .... .-+.....+
T Consensus 190 p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~-~lrn~p~~~ 258 (451)
T KOG2615|consen 190 PFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARI----------FKVA-ALRNPPLLD 258 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhh----------hhhh-hhcCccccc
Confidence 3333322 2222222 222223332 222211 11122211111000000000 0000 000000000
Q ss_pred chhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCC-CCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhh
Q 009231 278 NLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHV-TPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASK 356 (539)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k 356 (539)
...-++.... ....|...+..-. ..++.+ .+.+...+....-+...+.+.+.+ .+...+|.+++
T Consensus 259 ~i~~~~i~~l-------------~~~ly~~l~s~~~-~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~-~ql~~~~~l~~ 323 (451)
T KOG2615|consen 259 FISVLRIFGL-------------HYFLYLELFSGLE-NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLV-IQLALVPILPR 323 (451)
T ss_pred hHHHHHHHHH-------------HHHHHHHHHHHHH-hhHHHhhcCccCCChhhheeeeehhhHHHHH-HHHhccccccc
Confidence 0000000000 0000000000000 111111 123344444443333333333322 23334555555
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009231 357 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 436 (539)
Q Consensus 357 ~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 436 (539)
.++ ..+.....++.++.-.++..+... ....+-....+.++......|..+.+
T Consensus 324 ~~~-----~~~a~l~~~l~~~vP~~llls~~~----------------------~~~~l~~~s~l~sf~~A~~vt~Lt~L 376 (451)
T KOG2615|consen 324 YKG-----NIKAVLLFSLLLIVPAFLLLSLAR----------------------TPVVLYLGSTLKSFSTASVVTCLTSL 376 (451)
T ss_pred ccc-----chhhHHHHHHHHHHHHHHHHhccc----------------------cchhhhHHHHHHHHHHHHhhHHHHHH
Confidence 321 244455556666666555555443 34455666778888899999999999
Q ss_pred hhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 437 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 437 ~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
+.+..|.++||+.+|+.....+++-++||.+.|.+.
T Consensus 377 v~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 377 VHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 999999999999999999999999999999998765
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-14 Score=147.29 Aligned_cols=379 Identities=12% Similarity=-0.035 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHH--HHHHHHHHHhhHHHH-HHHHHhhccchHHHHHHHHHH-
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNI--IFIWTAATNFLPIVG-ALLADSYVGRYRMIGFGCFTC- 94 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i--~~~~~~~~~i~~~~~-G~laDr~~Grk~~~~~~~~~~- 94 (539)
...+....+...+.+..+.+.+|.|++ +.|.|.++.|.+ .....+...+.+|+. ++.+||+ ||||..++++.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344555778888888888899999986 669999999997 355577776777776 6689996 9999976665332
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.+.....+... +. ......++....+.++..+...+...++..|..++ ++++..
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~ 134 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKG 134 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHH
Confidence 21222222111 11 00122233333444455555555555555555544 346667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCC
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (539)
.+....+..+|..+|+...+++.++.||+..|++.+...++..+..+...++.++++++ +. +..+.+....+++..
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~- 210 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA--PL-ARRASLFRFFRRPLA- 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc--ch-hhHHHHHHHHcCcCH-
Confidence 77777788999999998888999999999999999887766555544433322111110 00 000111111111100
Q ss_pred CCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhh
Q 009231 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 334 (539)
...+...+.... ............+. ..+ .+++.....
T Consensus 211 ------------------------~~~~~~~~l~~~-------------~~~~~~~~~~~~l~-~~G----~s~~~ig~~ 248 (390)
T TIGR02718 211 ------------------------WSLLALALLSAM-------------TAVSGFGLSKLYLV-DAG----WPLEWIGRL 248 (390)
T ss_pred ------------------------HHHHHHHHHHHH-------------HHHHHHHHhhHHHH-hcC----CCHHHHHHH
Confidence 000000000000 00000000000111 011 223222222
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
.....+....+.......+.+| .+.++.+..+.++.++..+...... . . ....+...
T Consensus 249 ~~~~~~~~~~~g~~~~g~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~----~-----------~-~~~~~~~~ 305 (390)
T TIGR02718 249 GMAGGAVTVLLGCGGGAWLVRR-------AGLWRTFILGVGLAGSLALLWFAQA----A-----------F-WLAPGIAV 305 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHH----H-----------c-ccCCcHHH
Confidence 2221112222222223333444 5556666666666533333222111 0 0 00112222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcch
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHY 493 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 493 (539)
+....++.+++.+...+..+....+..++ +.+|+.+++.+...++|..+|+.+.+.+.+..+ +
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G----------------~ 369 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG----------------Y 369 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------c
Confidence 33334455666777778788887777776 899999999999999999999999998876542 3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 009231 494 DYYYWLLTALSMANFLY 510 (539)
Q Consensus 494 ~~~f~~~~~~~~v~~~~ 510 (539)
...|+..+++.+++++.
T Consensus 370 ~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 370 AGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56676666666655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=159.81 Aligned_cols=357 Identities=15% Similarity=0.111 Sum_probs=223.1
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHH----hhccchHH-HHHHHHHHHHHHHHH
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLAD----SYVGRYRM-IGFGCFTCLLGMVLL 101 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laD----r~~Grk~~-~~~~~~~~~~~~~l~ 101 (539)
+...+.+.....++..|+++.+|+++..+|.+..+..+...+..|+.|+++| |+ ||||- +++|....+++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4445555556678999999999999999999999999999999999999999 75 98775 556777888877777
Q ss_pred HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHH
Q 009231 102 WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF 181 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~ 181 (539)
.... |.- .........+.+...+..++......+..++.+|..+++++ |.+..++....
T Consensus 90 f~~~--p~~-------------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~------R~~l~~~~~~~ 148 (428)
T PF13347_consen 90 FSPP--PAG-------------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE------RTRLSSWRMIF 148 (428)
T ss_pred hccc--cch-------------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh------hhhHHHHHHHH
Confidence 6431 100 00011233345666777899999999999999999987543 88999998888
Q ss_pred HHHHHHHHHHHhhhhcccc-------cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCC
Q 009231 182 VSASSIVAVTCIVYIQDNL-------GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTK 254 (539)
Q Consensus 182 ~~lg~~~g~~i~~~l~~~~-------g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (539)
..+|..+...+.+.+.+.. +|++...+.+++.++..++.....++.+++++++++.....+.++...+++.+
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~- 227 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPF- 227 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchH-
Confidence 8888876666665554322 58888887777776666666555554111111111111111111111111110
Q ss_pred CCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhh
Q 009231 255 LPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIF 334 (539)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 334 (539)
+.+--..... ...+..............++.. -..+.+...
T Consensus 228 -------------------------~~l~~~~~~~------------~~~~~~~~~~~~y~~~~vl~~~--~~~~~~~~~ 268 (428)
T PF13347_consen 228 -------------------------RILLLAFFLQ------------WLAFALMNTFLPYYFTYVLGNE--GLISIFMLI 268 (428)
T ss_pred -------------------------HHHHHHHHHH------------HhhhhhhhhHHHHHHHHHhcCc--hhhHHHHHH
Confidence 0000000000 0000000000000000011100 000011111
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 335 AILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 335 ~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
..+..+ +..|++.++.+| .+.++.+..+.++.+++.++..+.. ..+.++
T Consensus 269 ~~~~~~--------v~~~~~~~l~~r---~gk~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 317 (428)
T PF13347_consen 269 FFVASI--------VGSPLWGRLSKR---FGKKKVYIIGLLLAALGFLLLFFLG--------------------PGSPWL 317 (428)
T ss_pred HHHHHH--------HHHHHHHHHHHH---ccceeehhhhHHHHHHHHHHHHHHH--------------------hhhHHH
Confidence 122222 233444444445 6666788999999999888877764 135777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPK-------SMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
+.+..++.|++.+..++...++..+..+. +..|..+|++++...++..+++.+.+.+.+..|
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 78888999999999999999999888764 457999999999999999999999998887664
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=156.92 Aligned_cols=384 Identities=12% Similarity=0.024 Sum_probs=224.8
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCC
Q 009231 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (539)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (539)
.+..+.+.....+..+++.++..+++++.|.++||+ |||++++.++++.+++.++.+++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~------------------- 169 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP------------------- 169 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence 356778889999999999999999999999999995 999999999999999999999888
Q ss_pred CCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchh
Q 009231 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKV 204 (539)
Q Consensus 125 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~ 204 (539)
+++.+++.|++.|++.++...+...+++|.+++++ |+.+.++ ......++.++|.+++++.. +||+
T Consensus 170 ----~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~-------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 170 ----NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ-------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred ----cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch-------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 88999999999999999999999999999999944 8999999 77888888888988888877 9999
Q ss_pred hhHHHHHHHHHHHHHHHh--cCCceeecCCCCCChhhHHHHHHHHHhhc-cCCCCCCCchhhhccCCCCcccCCCcchhh
Q 009231 205 GFGVPAVIMLLSALSFFL--ASPFYVKSKANTSLLPGLTQVLVASFKNR-RTKLPTQATEEMYHHGKGSMRLMPSENLRF 281 (539)
Q Consensus 205 ~f~i~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (539)
.+++.....++.++..++ ..|++...+. ...+..+.+....+.. +...+....+... ..+..+.........+
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g---~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLLWFLPPESPRWLLSKG---RIDEAIKILKKIAKLNGRKLSVKELLRLEL-LLRPLKLLFTEPKISF 311 (521)
T ss_pred HHHHHHHHHHHHHHHHHccCcChHHHHHcC---chHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HhhHhhhhccCCCCch
Confidence 999987766655444222 2333332222 2234444444443321 1111100000000 0000000000000000
Q ss_pred hhhhhhhcCCCCCCCCCCCCCCCccch---hHh--hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhh
Q 009231 282 LNKACMAKHPEQDLTPDGRASNPNSLC---TVE--QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASK 356 (539)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k 356 (539)
.+... . ....+...... ... -..++..... .+.. ...........+-.|. ......
T Consensus 312 ~~l~~---~-------~~l~~~~~~~~~~~~~~~~~y~gl~~~~~-~lg~---~~~~~~~~~~~~~~p~-----~~~~~~ 372 (521)
T KOG0255|consen 312 LDLFR---T-------PRLRYRTLYLLFIWFVFSLVYYGLSLNVS-GLGG---NIYLNFTLSGLVELPA-----YFRNGL 372 (521)
T ss_pred hhhhc---C-------HHHHHHHHHHHHHHHHHhHHHHhhhhhhh-hcCc---hHHHHHHHHHHHHhhH-----HHHHHH
Confidence 00000 0 00000000000 000 0001111110 0000 1111111111122221 111122
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009231 357 IKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEF 436 (539)
Q Consensus 357 ~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 436 (539)
...+ .+++.....+..+..+++++.+... .....+.......+...+....+...+.+
T Consensus 373 ~~~~---~gR~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (521)
T KOG0255|consen 373 LLPE---FGRRPPLFLSLFLAGIGLLLFGWLP-------------------DDLGGWLHWILPLLGKFFIGSAFNLIFLY 430 (521)
T ss_pred HHHH---hCcHHHHHHHHHHHHHHHHHHHHhh-------------------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 4566788888999999988888775 11111122222233344444444555888
Q ss_pred hhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 437 YYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 516 (539)
Q Consensus 437 ~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 516 (539)
..+..|+..|+.+.+..+....+|+++++.+...... . .+ ... +...+.+..+...+.....+
T Consensus 431 ~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~--------~~------~~~--~~~~~~~~~l~~~~~~~~lp 493 (521)
T KOG0255|consen 431 SAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-M--------FP------LLG--LILFGWLALLLGLLSLLLLP 493 (521)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--------cc------cch--HHHHHHHHHHHHHHHHhcCc
Confidence 8899999999999999999999999999998654321 1 00 111 11134555555555556666
Q ss_pred hcccCCCC
Q 009231 517 AYGPFKGR 524 (539)
Q Consensus 517 ~~~~~~~~ 524 (539)
+++.+.+.
T Consensus 494 et~~~~l~ 501 (521)
T KOG0255|consen 494 ETKGKPLP 501 (521)
T ss_pred ccCCCCCc
Confidence 66655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-15 Score=161.58 Aligned_cols=200 Identities=15% Similarity=0.233 Sum_probs=152.5
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
+|.+.+.++...+....+.+.......-++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.+++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence 45454555555666666667777888888999999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhccCCCCC----------------CCcccccC----------CCCCCC--ccchHHHHHHHHHHHhhccCc
Q 009231 96 LGMVLLWSTTILPGAKP----------------PACDQLRN----------GCESAT--WSQLMPLYFAFGLMSLGSGGI 147 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~----------------~~~~~~~~----------~~~~~~--~~~~~~~~~~~~l~g~g~g~~ 147 (539)
+|.++.++..++..-+. ..|...+. .|.... ...+..++++|+++|+|.+..
T Consensus 110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~ 189 (633)
T TIGR00805 110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI 189 (633)
T ss_pred HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence 99999986643321110 01321000 011101 113556789999999999999
Q ss_pred cccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccc----------------------cchhh
Q 009231 148 RSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL----------------------GWKVG 205 (539)
Q Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~----------------------g~~~~ 205 (539)
.+...+++.|.+|+++ |+.+.++++....+|.++|+++++++.+.+ +|+..
T Consensus 190 ~~~~~~~i~d~~~~~~-------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 190 FPLGISYIDDFAKSKN-------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred hhcCchhhhccCCccc-------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 9999999999999944 899999999999999999999999887542 27778
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 009231 206 FGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 206 f~i~~~~~l~~~~~~~~~ 223 (539)
|++.+++.++..+.++..
T Consensus 263 Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 263 FLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 888877666655544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-14 Score=148.28 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=127.6
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHHH-HHHHHHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMI-GFGCFTCLLGMVL 100 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~~-~~~~~~~~~~~~l 100 (539)
..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-.+..|+.|+++||. +||||-. +++.+..+++..+
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 45556666777778899999999999999999999999999999999999999973 5998764 4565677777666
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
+.... .. ..+.....+.+...+..++.........++.+|..++.+ +|++..++...
T Consensus 97 lf~~p---~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~------eRt~l~s~r~~ 153 (460)
T PRK11462 97 AYSTP---DL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT------QRISLQSWRFV 153 (460)
T ss_pred HHhCC---CC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH------HHHHHHHHHHH
Confidence 55322 10 001123334555666788888888888999999988754 49999999999
Q ss_pred HHHHHHHHHHHHhhhhccc-------ccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 181 FVSASSIVAVTCIVYIQDN-------LGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~-------~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
..++|..+++.+...+... .+|+....+.+++.++...+.+...+
T Consensus 154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 9999988887765443332 25666666666555554444444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-14 Score=146.47 Aligned_cols=388 Identities=9% Similarity=0.032 Sum_probs=218.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+..+......++--+++....++.+.+++++.|+|.+++|.+.++..+...+.+|+.|.++||. |.||-++..+.+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4555555566666777777889999999999999999999999999999999999999999996 977766554433322
Q ss_pred --HHHHH-HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 97 --GMVLL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 97 --~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+-... .+.. . -..-++++.++.++..+....+..+. .|.+-++.+ ++.+.
T Consensus 86 l~~pff~~v~~p---l-------------------l~~n~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~s----r~~~f 138 (412)
T PF01306_consen 86 LFGPFFIYVFGP---L-------------------LQSNFWLGAIIGGIYLGLVFNAGVPL-SEAYAERVS----RRNGF 138 (412)
T ss_dssp TCHHHHHHTHHH---H-------------------HHTT-HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHH----HHHSS
T ss_pred HHHHHHHHHHHH---H-------------------HHHHHHHHHHHHHHHHHHHHcccchH-HHHHHHHHH----HHhcC
Confidence 22221 1111 0 00013334333344444444333332 233332111 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCC----ChhhH-HHHHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS----LLPGL-TQVLVASF 248 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~l~~~~ 248 (539)
=+|-....+.+|.+++..++|.+.+ .+-+..|++.....++..++.+..++..+++.+..+ +.++. .+.+....
T Consensus 139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 217 (412)
T PF01306_consen 139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLF 217 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHT
T ss_pred CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHh
Confidence 3445555688999999999999876 355678887666555444444444332221110000 00000 00000000
Q ss_pred hhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhh-hhccCCCCCCeeec
Q 009231 249 KNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQA-SSMDRHVTPNFEIP 327 (539)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~ 327 (539)
+++ ++ |.--.++. . ..-.+...++ |. ....... ..-+..
T Consensus 218 k~~--------------------------~f-w~~~l~v~-g----------~~~~Y~vfdq-qf~~y~~~~f-~~~~~g 257 (412)
T PF01306_consen 218 KMR--------------------------NF-WFFVLFVI-G----------VAAIYDVFDQ-QFPIYFASFF-QSAGQG 257 (412)
T ss_dssp TSH--------------------------HH-HHHHHHHH-H----------HHHHHHHHHH-HHHHHHHHTS-SSHHHH
T ss_pred cch--------------------------hH-HHHHHHHH-H----------HHHHHHHHHH-HHHHHHHHHh-cccccC
Confidence 000 00 00000000 0 0000000001 11 1111111 000111
Q ss_pred CcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 009231 328 SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAV 407 (539)
Q Consensus 328 ~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 407 (539)
...++..+++.++ .+.....+.+++.+| .+.+..+.++..++.+-....++.+
T Consensus 258 ~~~~G~l~s~~v~-----~E~~~m~~~p~li~r---ig~k~~Lllag~i~~iRi~~~~~~~------------------- 310 (412)
T PF01306_consen 258 NQMYGYLWSVQVF-----LEALMMFFSPWLINR---IGAKNLLLLAGVIMAIRIIGSGFAT------------------- 310 (412)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred hhHHhHHHHHHHH-----HHHHHHHHHHHHHHh---cChHhHHHHHHHHHHHHHHHHhhhc-------------------
Confidence 2233333333222 222233334444445 7888889999999999988888776
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC
Q 009231 408 VQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPS 486 (539)
Q Consensus 408 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~ 486 (539)
+++++++.-.+.++-..+...+..-++.+..|++..++...+. .+..++|..+.+.+.|.+.|..|
T Consensus 311 ---~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G---------- 377 (412)
T PF01306_consen 311 ---NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG---------- 377 (412)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC----------
Confidence 7888888899999999999999999999999999999999885 67899999999999998887664
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009231 487 NINKGHYDYYYWLLTALSMANFLYYLACCKAYG 519 (539)
Q Consensus 487 ~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 519 (539)
+...|++.+++.+...++..+..++.+
T Consensus 378 ------~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 378 ------FQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred ------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 456788888777766666666555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-13 Score=137.11 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=133.6
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (539)
.-+...+.. ..+-.+.+.+++.++++..+++++..++..++.+..+..|++.+|+ |+|+.++.|+.++++|..+..-+
T Consensus 21 lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pA 98 (422)
T COG0738 21 LFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPA 98 (422)
T ss_pred HHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhh
Confidence 334444443 3445677788999999999999999999999999999999999997 99999999999999999888633
Q ss_pred hccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHH
Q 009231 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 184 (539)
+ +..++..++.+.++.+.|.+...+++++++....|+++ -.+-.+..+....+
T Consensus 99 a--------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~-------a~~rlnl~q~fn~l 151 (422)
T COG0738 99 A--------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES-------AAFRLNLAQAFNGL 151 (422)
T ss_pred h--------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh-------HHHHHHHHHHhhhh
Confidence 3 12367788899999999999999999999999999855 35556777778899
Q ss_pred HHHHHHHHhhhhccc-------------------ccchhhhHHHHHHHHHHHHHHH
Q 009231 185 SSIVAVTCIVYIQDN-------------------LGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 185 g~~~g~~i~~~l~~~-------------------~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
|+++||++++++..+ -.++.++...+...++..+...
T Consensus 152 Ga~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 152 GAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999987652 1366677666655544444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=152.48 Aligned_cols=403 Identities=15% Similarity=0.095 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHhhcchh---hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTP---NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++...|+.++..+++.. .+-..++++++-+.++++|+.++......+..|+.+.+.||+ |.|.+.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 5555566666666666654 345566788999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHH-HHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAF-GLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
|.++.++++ +.+.+++.. ++.|+|.|+.......++..+|++ +|+.+.
T Consensus 124 g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------kR~lA~ 172 (509)
T KOG2504|consen 124 GLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------KRALAT 172 (509)
T ss_pred HHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------HHHHHH
Confidence 999999988 677777664 678999999999999989988864 589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCC-CCChhhHHHHHHHHHhhccCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKAN-TSLLPGLTQVLVASFKNRRTK 254 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 254 (539)
++-..+..+|..+-|.+..++.+.+|||..+++.+.+.+-.+......+|.....++. .++.....+......+.....
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELR 252 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccc
Confidence 9988888899998888999999999999999998887766666555555532222111 000000000000000000000
Q ss_pred CCCCCchhh----------hccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-----------h-
Q 009231 255 LPTQATEEM----------YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-----------Q- 312 (539)
Q Consensus 255 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------q- 312 (539)
...++.... .+..+..+..........+|.... ....+...... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll-------------~~~~fl~~~~~~~~~~~g~~~p~~ 319 (509)
T KOG2504|consen 253 ISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL-------------KDPKFLLLALSNLFAYLGFNVPFV 319 (509)
T ss_pred cccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH-------------cCchHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000000000000001111110 00111111100 0
Q ss_pred --hhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 313 --ASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAA 390 (539)
Q Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~ 390 (539)
..... ..+ +.......... .+.+.+.+.-+......+++ ..+......++++..+++.+++.+..
T Consensus 320 ~l~~~~~-~~g----~~~~~aa~l~S-----iigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~p~~~-- 386 (509)
T KOG2504|consen 320 YLPSYAK-SLG----LSSNDAAFLLS-----IIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFLPFAT-- 386 (509)
T ss_pred HHHHHHh-hcC----CChhhhHHHHH-----HHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 00011 110 11111111111 11111111222222233331 03466677778888888876666664
Q ss_pred HHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 391 RRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 470 (539)
Q Consensus 391 ~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~ 470 (539)
+.+.++...+++|+..+...........+..+.+.-..+.|+..+.++++..+|+.+.+.
T Consensus 387 --------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~ 446 (509)
T KOG2504|consen 387 --------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL 446 (509)
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence 667778888899999888888888889999999999999999999999999999999876
Q ss_pred hhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 009231 471 VDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACC 515 (539)
Q Consensus 471 i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 515 (539)
+.+.+ ++|+..|+..+++.+++...++...
T Consensus 447 ~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 447 LYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 65544 2467778888877777776655544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-13 Score=144.25 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=119.2
Q ss_pred hhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 009231 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (539)
Q Consensus 38 ~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (539)
.....++.+++|-+ ....|+.+.+.++..+..++.|+++|.+ |||.+++.+.++..+|++.++.++
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 45556889999965 5667888999999999999999999997 999999999999999999999777
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009231 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~ 197 (539)
+...++.+..+.|+|.|... .....++|..|.+ .|..+..+.....-+....+|.++..+.
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k-------~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK-------WRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc-------hhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 67779999999999976654 4566689999883 3666666655544455556777777776
Q ss_pred ccccchhhhHHHHHHHHHHHHH
Q 009231 198 DNLGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 198 ~~~g~~~~f~i~~~~~l~~~~~ 219 (539)
.+.+|||.|++.++...++++.
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHH
Confidence 6779999999988766555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=135.64 Aligned_cols=358 Identities=16% Similarity=0.114 Sum_probs=227.9
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHH-HHHHHHHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRM-IGFGCFTCLLGMVL 100 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~-~~~~~~~~~~~~~l 100 (539)
..+..++.+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.++||. +||+|- ++.+.+.+++...+
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 55666677777889999999999999999999999999999999999999999975 477665 66666777777777
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
+..+.... .+.+....++...+.++++........++.++..++.+ +|.+..++...
T Consensus 100 ~F~~p~~~-----------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~------ER~~l~s~R~~ 156 (467)
T COG2211 100 LFITPDFS-----------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ------ERASLTSWRMV 156 (467)
T ss_pred HHcCCCcc-----------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH------HHHHHHHHHHH
Confidence 77544110 01244455666788999999999999999999988755 49999999999
Q ss_pred HHHHHHHHHHHHhhhhcc-------cccchhhhHHHHHHHHHHHHHHHhcCCceee-cCCCCC-ChhhHHHHHHHHHhhc
Q 009231 181 FVSASSIVAVTCIVYIQD-------NLGWKVGFGVPAVIMLLSALSFFLASPFYVK-SKANTS-LLPGLTQVLVASFKNR 251 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~-------~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~ 251 (539)
..++|..+...+.+.+.. ..||+..-.+.+++..++.+..+...+++.. ..+.++ ...+..+.+....+|+
T Consensus 157 ~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nr 236 (467)
T COG2211 157 FASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNR 236 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccc
Confidence 999997776655544432 3467777777776666666665555554433 222221 2222222232233322
Q ss_pred cCCCCCCCchhhhccCCCCcccCCCcchhhhhh-hhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcc
Q 009231 252 RTKLPTQATEEMYHHGKGSMRLMPSENLRFLNK-ACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGS 330 (539)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 330 (539)
.+... .....+.. ...... . . +.....-.++ ...
T Consensus 237 p~~~~--------------------l~~~l~~~~~~~i~~---------s-~---------~~yy~~y~lg------~~~ 271 (467)
T COG2211 237 PLLLL--------------------LLMNLLLFIAFNIRG---------S-I---------MVYYVTYVLG------DPE 271 (467)
T ss_pred hHHHH--------------------HHHHHHHHHHHHHHh---------h-h---------hheeEEEEcC------ChH
Confidence 11100 00000000 000000 0 0 0000111110 000
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccc
Q 009231 331 FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQM 410 (539)
Q Consensus 331 ~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 410 (539)
..............+. ..+++.++.+| ++.++...+|.++.+++.+.+.+.. ..
T Consensus 272 l~~~~~~~~~~~~~l~---~~~~~p~L~~~---~gkk~~~~~~~~~~~i~~~~~~f~~--------------------~~ 325 (467)
T COG2211 272 LFAYLLLLASGAGLLI---GLILWPRLVKK---FGKKKLFLIGLLLLAVGYLLLYFTP--------------------AG 325 (467)
T ss_pred HHHHHHHHHHHHHHHH---HHHhHHHHHHH---hchHHHHHHHHHHHHHHHHHHHhhc--------------------Cc
Confidence 0010011111111111 12334444444 6777899999999999988887774 22
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 411 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELP-------KSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 411 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
+.++++...++.++|.+..++...+++.+.+. .+..|...|+.++.+-+|..++..+.+++....|
T Consensus 326 ~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 326 SVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred chHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666788899999999999988876543 4567889999999999999999999999887664
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-12 Score=123.28 Aligned_cols=346 Identities=14% Similarity=0.109 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
+..+.+..+=-|..+-++-+.+. -+++++|+|.+++|.+.+.-.++..+..++..+++.|+ |.+|.+..++++.++|.
T Consensus 14 i~gIvlia~NLR~~itsvgPLL~-~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~ 91 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLLD-EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 33334444445666655555544 56889999999999999999999999999999999997 99999999999999887
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.+=... +...++.+-.+.|.|.+..+.-.++.+-+.||++ -+..+++|
T Consensus 92 ~iR~~~------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~--------~~~mtglY 139 (395)
T COG2807 92 LIRSLG------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR--------VGLMTGLY 139 (395)
T ss_pred HHHhcc------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc--------hhhHHhHH
Confidence 775532 3566889999999999999999999999999873 57889999
Q ss_pred HHHHHHHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCC
Q 009231 179 YVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPT 257 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 257 (539)
....++|+++++.+...+.++. ||+.....-+...++++++.+....|....+.+.+..+
T Consensus 140 s~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~------------------- 200 (395)
T COG2807 140 STSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLVS------------------- 200 (395)
T ss_pred HHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-------------------
Confidence 9999999999999999888877 79999888888887777776654322211111110000
Q ss_pred CCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHH
Q 009231 258 QATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAIL 337 (539)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (539)
+...+++...|.-..++-..+-- .+...-|. -...+..+++... .+.+..+
T Consensus 201 -------------~~~vw~~~~aW~vtLfmGlqS~~-----~Y~~~~WL-P~ili~~G~sa~~-------aG~llsl--- 251 (395)
T COG2807 201 -------------VRKVWRSPLAWQVTLFMGLQSLL-----YYIVIGWL-PAILIDRGLSAAE-------AGSLLSL--- 251 (395)
T ss_pred -------------ccccccCchhHHHHHHHHhhHHH-----HHHHHHHH-HHHHHHcCCCHHH-------hhhHHHH---
Confidence 00011112122110000000000 00000000 0000111222111 1111111
Q ss_pred HHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHH
Q 009231 338 TLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLP 417 (539)
Q Consensus 338 ~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 417 (539)
..++-.| ..+..|..-++. .+.+........++.+++..+.+.+ .+..++|
T Consensus 252 ~~l~~~~--~~ll~P~la~R~-----~n~r~~~~~~~~~~l~G~~G~~~~P-------------------~~~~~lw--- 302 (395)
T COG2807 252 MQLAQLP--TALLIPLLARRS-----KNQRPLVVLALLLMLVGLVGLLLAP-------------------GQLPILW--- 302 (395)
T ss_pred HHHHHHH--HHHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHHHhh-------------------hhHHHHH---
Confidence 1111111 112333333321 3445566677777777777776654 1122222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 418 YLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 418 ~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
.+++|+|.+..+|....++....++ +..+.-+|+....+.+=...||.++|.+.|.+|
T Consensus 303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 5889999999999999999876544 556667777777777777889999999998874
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-11 Score=131.94 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=120.8
Q ss_pred hcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 009231 34 VGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (539)
Q Consensus 34 ~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 113 (539)
|+... ....+++++|+|.++.+++.+... ....+.+++|+++||+ |||+++.++.+++.+|.++++++.+-.
T Consensus 44 y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~----- 115 (591)
T PTZ00207 44 YAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEV----- 115 (591)
T ss_pred HHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 34443 344678999999999999987644 3445677889999997 999999999999999999999863100
Q ss_pred CcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHH-HHHH
Q 009231 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIV-AVTC 192 (539)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-g~~i 192 (539)
. ..+++.+++.|++.|+|.+...+.....+.+++|+ +|+++.++......+|+++ +++.
T Consensus 116 -----------i-~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------~RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 116 -----------I-EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------NRGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred -----------c-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12688899999999999999888888899999973 2899999999999999975 5555
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 193 IVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
.+++. .+|+..|++.++..++..++.
T Consensus 176 ~~l~~--~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 176 LAFFS--DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 55544 467777777776655544443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=138.80 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=128.8
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCC
Q 009231 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (539)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (539)
.+++|+...+.+.+.+++.+++.++.+++|++.||+ .-.+.+....+.+.+-.++.....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------- 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------- 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 367889999999999999999999999999999997 877777777666665555555444
Q ss_pred CCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhh------cc
Q 009231 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI------QD 198 (539)
Q Consensus 125 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l------~~ 198 (539)
+.+.+++.|++.|+..+..+|+...+++.++.++ +|+.-+++++...++|.++|.++...+ ..
T Consensus 133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~-------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS-------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh-------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 6778999999999999999999999999999994 489999999999999999999988775 33
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhcCCceee
Q 009231 199 NLGWKVGFGVPAVIMLLSALSFFLASPFYVK 229 (539)
Q Consensus 199 ~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~ 229 (539)
..||||.|++.+++.++..++.++..|..++
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 5699999999998877766665555554433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-18 Score=181.62 Aligned_cols=389 Identities=14% Similarity=0.067 Sum_probs=215.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHH
Q 009231 53 TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMP 132 (539)
Q Consensus 53 ~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (539)
.+.+++.+...++..++.+++|+++||+ |||++++++.++..++.++.++++.. .+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~ 104 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFWM 104 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------ccccc
Confidence 4578899999999999999999999997 99999999999999999998876511 15677
Q ss_pred HHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc---ccchhhhHHH
Q 009231 133 LYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVP 209 (539)
Q Consensus 133 ~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~g~~~~f~i~ 209 (539)
+.++|+++|+|.|+..+....++.|..|+++ |+...++.+....+|..++..+.-...+. .+||..+.+.
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~-------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH-------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999944 88888888888889988888665544333 3499998887
Q ss_pred HHHHHHHHHH--HHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhh
Q 009231 210 AVIMLLSALS--FFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACM 287 (539)
Q Consensus 210 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (539)
++..++..+. ++..+|++...+.+.++ +.+++.. .++...... +.+...++.+...+.. .....+++....
T Consensus 178 ~~~~l~~~~~~~~~pESP~wL~~~~~~~~---A~~~l~~-~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 250 (451)
T PF00083_consen 178 AIPSLLVLLLRFFLPESPRWLLSKGRDEE---AEKVLRK-LRGKEIEDE--EIEEIKAEKKESQESK-ASWRDLFRNKKY 250 (451)
T ss_pred ccccccccccccccccccceecccccccc---ccccccc-ccccccccc--cccccccccccccccc-eeeeeccccccc
Confidence 7655443332 23334554433322222 2222211 111100000 1111111111000000 000000000000
Q ss_pred hcCCCCCCCCCCCCCCCccchhHhhhhhcc------CCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCC
Q 009231 288 AKHPEQDLTPDGRASNPNSLCTVEQASSMD------RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKP 361 (539)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~------~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~ 361 (539)
+............++..+.. ..+.............. ...+...+.......+.+|++|
T Consensus 251 ----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~GR-- 315 (451)
T PF00083_consen 251 ----------RKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATL---ILGLVNFLGTLLAIFLIDRFGR-- 315 (451)
T ss_pred ----------ccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccc--
Confidence 00000000000000000000 00000001111111011 0001111111112234555444
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 009231 362 CQLSLKLRMGIGLLFSTASMTAWA-IVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE 440 (539)
Q Consensus 362 ~~~~~~~~~~~g~~l~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~ 440 (539)
+..+..+..+++++.+.+. ... ....+ ....+...+....+..........+....+..|.
T Consensus 316 -----r~~~i~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~El 377 (451)
T PF00083_consen 316 -----RKLLIIGLLLMAICSLILGIIFF------------LGVSS-SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAEL 377 (451)
T ss_pred -----ccccccccccccccccccccccc------------ccccc-ccccccccceeeeecccccccccccccccccccc
Confidence 4467777777777766664 111 00000 0001222222111222222334456666777899
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009231 441 LPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520 (539)
Q Consensus 441 ~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 520 (539)
.|++.|+++.|+....+++++.+++.+.+.+.+..+ ....+++.++++++..++.+...+++++
T Consensus 378 fPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 378 FPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------GWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc----------------ccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 999999999999999999999998888766543221 1234666677777787778888888888
Q ss_pred CCCCc
Q 009231 521 FKGRV 525 (539)
Q Consensus 521 ~~~~~ 525 (539)
++.+|
T Consensus 442 ~~l~e 446 (451)
T PF00083_consen 442 KTLEE 446 (451)
T ss_pred CCHHH
Confidence 88776
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=139.85 Aligned_cols=401 Identities=15% Similarity=0.101 Sum_probs=209.1
Q ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccc
Q 009231 50 METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQ 129 (539)
Q Consensus 50 ~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (539)
++....+.+..+..++..+++++.||++||+ |||+++...+++..+++++++++...+. ...-
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~----------------~~~~ 143 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS----------------PLGV 143 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC----------------Ccch
Confidence 6778888999999999999999999999997 9999999999999999997775442221 1124
Q ss_pred hHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccc---------
Q 009231 130 LMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL--------- 200 (539)
Q Consensus 130 ~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~--------- 200 (539)
.+.+...|.++|+|.|+-.|.+.+..+|..-+..++ ...+..++++.++.-.|++++.++.+..-...
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG---a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~l 220 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG---AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHL 220 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc---ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHH
Confidence 566788899999999999999999999987663321 11233344556666666666665555442211
Q ss_pred --cchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCC-Cc
Q 009231 201 --GWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMP-SE 277 (539)
Q Consensus 201 --g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 277 (539)
=||..|.+.++..++.+.. +-+.++.+.-+ .+ ..+....+..+..-... .+ ..++...+..... +.
T Consensus 221 d~vWRl~~glg~vpa~~~ly~----Rl~M~Et~~Y~-al--~~~~~~~a~~d~~k~~~---~~-~~~~~~~~~~~~~~~~ 289 (538)
T KOG0252|consen 221 DGVWRIIFGLGAVPALLVLYF----RLKMPETARYT-AL--VSKKLKQAAGDMKKVLS---VD-IEAESTAESDVPPPSN 289 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhcCCcchhHH-HH--hhcCHhhhhhccccccc---cc-cchhhccccCCCCccc
Confidence 2888777655533322221 11112211100 00 00011111111100000 00 0000000000000 00
Q ss_pred chh-hhhhhhhhcCCCCCCCCCCCCCCCccchhHh-------hhhhccCCCCCCeeecCc-chh-----hhhHHHHHHHH
Q 009231 278 NLR-FLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------QASSMDRHVTPNFEIPSG-SFN-----IFAILTLTIWI 343 (539)
Q Consensus 278 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------q~~~~~~~~~~~~~~~~~-~~~-----~~~~~~ii~~~ 343 (539)
... |......++. ... ......|+..+.. |..-.+ .++ + .|.. ... ......+..+.
T Consensus 290 ~~~~F~~~f~~~hg-~~L----lgt~~~WFllDiafy~~nL~~s~I~~-~ig--~-~~~~~~~~~~~~vA~~~~iia~~~ 360 (538)
T KOG0252|consen 290 SFGLFSRLFLRWHG-KHL----LGTAGTWFLLDIAFYGQNLFQSVIFS-AIG--V-IPSANTYHELFKVAEGNLIIAVCS 360 (538)
T ss_pred ccchHHHHHHHHHH-HHH----HHHHHHHHhhhhhhhccccHHHHHHH-hhc--c-CCCcchHHHHHHHHHHHHHHHHHc
Confidence 000 1000000000 000 0001122222221 111111 000 0 1110 110 11111111111
Q ss_pred HHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHH
Q 009231 344 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 423 (539)
Q Consensus 344 ~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g 423 (539)
-+ .-+++.--+.++ .+++..-..|+.++.+-+++++..- +-. .-....++..-+..-
T Consensus 361 ~v---PGyw~tv~~id~---iGRk~iq~~GF~~~~i~~~~~~~~y---------~~~--------~~~~Gf~v~y~l~~f 417 (538)
T KOG0252|consen 361 TV---PGYWFTVYFIDI---IGRKYIQLMGFFIMTIFFFVIAGPY---------NQL--------ENTIGFVVLYSLTFF 417 (538)
T ss_pred cC---CceeEEEEEeeh---hhhHHHHHhhHHHHHHHHHHHcCCc---------ccc--------cccCceeehHHHHHH
Confidence 11 012222222333 5666778889999998888876553 000 001222233333334
Q ss_pred HHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHH
Q 009231 424 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTAL 503 (539)
Q Consensus 424 ~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 503 (539)
++.-.-+.+......+..|.+.||++-|+....+-+|.++|........+. ++ |.+ ......+++++++
T Consensus 418 f~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~-------~y-p~~---~g~~~v~~i~~~~ 486 (538)
T KOG0252|consen 418 FGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH-------NY-PPN---IGVRNVFIILAGC 486 (538)
T ss_pred HHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc-------cC-Ccc---ccchHHHHHHHHH
Confidence 444444445555556889999999999999999999999999887665431 11 111 2345678888888
Q ss_pred HHHHHHHHHHHhhhcccCCCCc
Q 009231 504 SMANFLYYLACCKAYGPFKGRV 525 (539)
Q Consensus 504 ~~v~~~~~~~~~~~~~~~~~~~ 525 (539)
++++.++.+++ ++.+.+..+|
T Consensus 487 ~~~gi~~T~l~-pEtk~~~lee 507 (538)
T KOG0252|consen 487 MLLGILFTLLI-PETKGKSLEE 507 (538)
T ss_pred HHHhHheeEEe-ecccccCHHH
Confidence 88887766654 4777777665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=118.06 Aligned_cols=378 Identities=16% Similarity=0.127 Sum_probs=222.1
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhcc-----ch-HHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 009231 44 LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG-----RY-RMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (539)
Q Consensus 44 l~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G-----rk-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (539)
+..|++++..-.+.++..-.+... ..+..|+.||++ + || +=++.|.+.++.+..+..++...-. .+.+|
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~---~~~~~ 80 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA---ESGQQ 80 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc---ccccc
Confidence 356899999999998887777666 578899999997 5 33 3367777777777766665431111 00011
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009231 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~ 197 (539)
. ....+.......+..++.|+|.+...++..++++|..|+ ++|+++.++.+...-+|.+++..+.+.+.
T Consensus 81 ~----~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 81 S----SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred c----ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 011111222345567789999999999999999999999 44999999999999999999999999887
Q ss_pred ccccchhhhHH----HHHHHHHHHHHHHhcCCceeecC-CCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcc
Q 009231 198 DNLGWKVGFGV----PAVIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMR 272 (539)
Q Consensus 198 ~~~g~~~~f~i----~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (539)
+.++..-..-+ ..+..++..+..+-..++.++.. ..+++.....+.+.....++
T Consensus 150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~--------------------- 208 (403)
T PF03209_consen 150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASP--------------------- 208 (403)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCC---------------------
Confidence 76653222222 22233334444455445444332 11111111122221111111
Q ss_pred cCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcc---hhhhhHHHHHHHHHHHhHH
Q 009231 273 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGS---FNIFAILTLTIWIGLYDRA 349 (539)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~ii~~~~l~~~~ 349 (539)
+..+++...+.. .+.+..|..-+...-+.-|.++.+. ++..-....++...+...
T Consensus 209 ----~a~~f~~fl~l~-----------------t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~- 266 (403)
T PF03209_consen 209 ----QARRFFVFLFLG-----------------TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGF- 266 (403)
T ss_pred ----ChhHHHHHHHHH-----------------HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000111000000 0000002111111111111233322 222223333344333222
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 009231 350 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 429 (539)
Q Consensus 350 ~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~ 429 (539)
+..| + .+.++...+|....++++....... ...+.+.+.+..+++|+|.++.
T Consensus 267 ---~l~~---~---~~~~~~a~~G~~~~~~~f~lii~a~-------------------~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 267 ---LLSR---R---LGKKRTAALGCLLGALAFALIILAG-------------------PLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred ---HhcC---C---CCchHHHHHHHHHHHHHHHHHHHHH-------------------hcccchHHHHHHHHHHHhhhHH
Confidence 2222 2 4445566778888888877665553 2235677888899999999999
Q ss_pred hhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 009231 430 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509 (539)
Q Consensus 430 ~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 509 (539)
.....+...+.++++..|+.+|.|...+.++..+|..+.+.+.|... .+..++ ....|..+|.+=+.+.+++++
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~-----~~~~~~-~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR-----ALFGNS-PALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCC-cchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877653 111110 112466667666666666655
Q ss_pred HHHHH
Q 009231 510 YYLAC 514 (539)
Q Consensus 510 ~~~~~ 514 (539)
+....
T Consensus 393 ll~~l 397 (403)
T PF03209_consen 393 LLGRL 397 (403)
T ss_pred HHHHh
Confidence 54433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-11 Score=127.48 Aligned_cols=360 Identities=16% Similarity=0.075 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH-HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHH
Q 009231 55 ATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF-TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPL 133 (539)
Q Consensus 55 ~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (539)
.+...++..+...+..|+.|.++|+- |+||-++.... +..+...++.+.. | .+.+..
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--~-------------------~~~~~~ 129 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--P-------------------GQWWLA 129 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--c-------------------chHHHH
Confidence 45677888888999999999999997 77776655544 4445555555433 1 134444
Q ss_pred HHHHHHHHhhccCccccchhhhcccCCCCCCCcc-------------------chhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 134 YFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKS-------------------KGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 134 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~-------------------~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
.+..++..++.+.......+++.|..++++..+. ..+|++..+.-+..+++|+.+...+.-
T Consensus 130 ~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l 209 (477)
T PF11700_consen 130 LVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISL 209 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566678888888889999999988663100 001267777777778888888776654
Q ss_pred hhcc--------cccchhhhHHHHHHHHHHHHHHHhcCCceee--cCC-CCCChhhHHHHHHHHHhhccCCCCCCCchhh
Q 009231 195 YIQD--------NLGWKVGFGVPAVIMLLSALSFFLASPFYVK--SKA-NTSLLPGLTQVLVASFKNRRTKLPTQATEEM 263 (539)
Q Consensus 195 ~l~~--------~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 263 (539)
.+.. ..+.|..+.+.++..++..+-.++..|+.+. ..+ ..+....-.+.+....++.+. .
T Consensus 210 ~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~-~-------- 280 (477)
T PF11700_consen 210 LLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRK-L-------- 280 (477)
T ss_pred HHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh-C--------
Confidence 4321 1235777777776544433333333333322 111 122222333333333332110 0
Q ss_pred hccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHHHH
Q 009231 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWI 343 (539)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 343 (539)
++...|+-..+...+ +.. ..... ........++ ++...+ ....+.+.+..
T Consensus 281 ------------~~~~~fLia~~l~~d--------g~~-ti~~~----~~i~a~~~lg----~s~~~l-~~~~l~~~i~a 330 (477)
T PF11700_consen 281 ------------RQLFLFLIAYFLYSD--------GVN-TIISF----AGIYATEVLG----MSTTQL-IVFGLVVQIVA 330 (477)
T ss_pred ------------hHHHHHHHHHHHHHH--------HHH-HHHHH----HHHHHHHhcC----cCHHHH-HHHHHHHHHHH
Confidence 011122111000000 000 00000 0001111111 111111 11111112222
Q ss_pred HHHhHHHHHHhhhhcCCCCCCCch--HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhcCCCCCccccccchHHHHHHHH
Q 009231 344 GLYDRAVLPLASKIKGKPCQLSLK--LRMGIGLLFSTASMTAWA--IVEAARRSIAINEGISDDLRAVVQMSAMWQLPYL 419 (539)
Q Consensus 344 ~l~~~~~~~l~~k~~~~~~~~~~~--~~~~~g~~l~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 419 (539)
.+...+ ..++.+| ++.+ +.+.+++.+..+..+... +.. + .....+.+.+.+.-
T Consensus 331 ~~Ga~~----~g~l~~r---~g~k~~~~l~~~l~~~~~i~~~g~~G~~~--------------~--~~g~~~~~~f~~~a 387 (477)
T PF11700_consen 331 IIGALL----FGWLQDR---FGPKTKRTLLISLILWIIIPLYGLFGFWP--------------S--FFGLKSPWEFWVLA 387 (477)
T ss_pred HHHHHH----HHHHHHH---hCCchhHHHHHHHHHHHHHHHHHHHHhhh--------------c--ccCcccHHHHHHHH
Confidence 222222 2333333 4444 555555554423222211 111 0 00112344455556
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHH
Q 009231 420 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 499 (539)
Q Consensus 420 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 499 (539)
++.|+..+...+..-++..+..|+++.+...|++.+.....+.+||.+.+.+.+.++ +....+..
T Consensus 388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~~ 452 (477)
T PF11700_consen 388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFLF 452 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHH
Confidence 788999999999999999999999999999999999999999999999999987774 23455666
Q ss_pred HHHHHHHHHHHHHH
Q 009231 500 LTALSMANFLYYLA 513 (539)
Q Consensus 500 ~~~~~~v~~~~~~~ 513 (539)
+.++.++++++.+.
T Consensus 453 l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 453 LLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHhh
Confidence 67777777776644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=138.37 Aligned_cols=176 Identities=11% Similarity=0.065 Sum_probs=129.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.....+...++....+|++..++|.|+++++|++..+.++......++..++.+++|+++||+ |||+++..+.+...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~ 328 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFV 328 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 3333333445566788999999999999999999999888888888888999999999999997 999999888765444
Q ss_pred HHHHHH-HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 97 GMVLLW-STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 97 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
+...+. ... ..+...+++++++.+++.+...+...+++.+.+|+ +.|+++.
T Consensus 329 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------~~Rg~~~ 380 (490)
T PRK10642 329 LAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------HIRYSAL 380 (490)
T ss_pred HHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------ccchHHH
Confidence 333222 111 01355667788888887777777778888899998 4489999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~~~ 221 (539)
++.+....+++.++|.+.+++.+.. +|+.++++..+..+++.+..+
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9866667777888999999987755 466666555544444444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=138.54 Aligned_cols=176 Identities=12% Similarity=0.023 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.++...+..++....+++...++|.|+++++|+|..++++......++..++.+++|+++||+ |||+.+..+.....+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3466666677777777888889999999999999999999999999999999999999999997 999887766544443
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+..... . .+.....+.+++.|++.........+...|.+|+ +.|+++.+
T Consensus 337 ~~~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------~~~g~a~g 388 (467)
T PRK09556 337 IFTLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------KAIGVANG 388 (467)
T ss_pred HHHHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------hhHHHHHH
Confidence 332222211 0 1344455666666654333322333566799988 45999999
Q ss_pred HHHHHHHH-HHHHHHHHhhhhcc------------cccchhhhHHHHHHHHHHHHHHH
Q 009231 177 WYYVFVSA-SSIVAVTCIVYIQD------------NLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 177 ~~~~~~~l-g~~~g~~i~~~l~~------------~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+.+...++ |..++|.+.|++.+ ..+|+..|++.++..+++.+..+
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999997 77999999999998 57899999988777776655544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=132.87 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=131.5
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
++..+..+...+.....++....++|.|+++++|+++.+++.+.+...++..++.+++|+++||+ ||||.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 34344443444444455555667899999999999999999998887888888899999999997 99998887766555
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
+......... +.+.+++.+++.+++.|...+..+++..|.+|+ + |+++.
T Consensus 294 ~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~-------~g~~~ 342 (393)
T PRK15011 294 CFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q-------AGSAT 342 (393)
T ss_pred HHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C-------cchHH
Confidence 4433333222 445566677777777766666667777888874 2 68889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+.++...++|..+||.++|++.++.||+..|.+.++..+++.+..+.
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99888899999999999999999899999999887777666655543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-11 Score=118.18 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
..+...+.+.+-...-+....+.+-+....|++..|..++......+..++...+|.++|++ |||+......+...+.-
T Consensus 79 l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~ 157 (528)
T KOG0253|consen 79 LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFG 157 (528)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHH
Confidence 34444556666555555566666666778899999999999999999999999999999997 99999888877666655
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.+.+.+. |+..+++.|.+.++|.|+ .|...++-.|..|..+ |....-+.
T Consensus 158 ~is~~sp-----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-------r~~~~V~~ 206 (528)
T KOG0253|consen 158 VISGASP-----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-------RWLLTVMS 206 (528)
T ss_pred HhhcCCC-----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-------CCcchhHH
Confidence 5555444 788899999999999999 8999999999999866 34433333
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhhhHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
....+|.++...+.=....++||||-......
T Consensus 207 -~~waig~v~ea~law~vm~~~gwr~~l~~~~~ 238 (528)
T KOG0253|consen 207 -FFWAIGQVFEALLAWGVMSNFGWRYLLFTSST 238 (528)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 56788888888776666778899997766654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=125.46 Aligned_cols=174 Identities=22% Similarity=0.265 Sum_probs=153.4
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchH-HHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-MIGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~-~~~~~~~~~~ 95 (539)
|..+......++....+.....+.+.|+.+.+|.+..+.+.+.....++..++.++.|+++||+ |||+ .+..+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4455566677778888888889999999888899999999999999999999999999999997 9999 9999999998
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++........ +.+..++...+.+++.+...+...+++.|..|+ ++|++.+
T Consensus 254 i~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 303 (352)
T cd06174 254 LGLLLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------EARGTAS 303 (352)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------HHHHHHH
Confidence 8888877655 566788889999999999999999999999998 4499999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+..+...++|..++|.+.+.+.+..+|+..|.+.++..+++.+..+
T Consensus 304 ~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 304 GLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999989999999998887776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=129.31 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=134.9
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (539)
.+..++++....+++.|+. +.|++ +.+.....+.++..++.++.|+++||+ ||||.+..+..+..++..+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~- 300 (399)
T PRK05122 226 ALASIGFGTIATFITLYYA-ARGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3455667777788888876 45663 456667778888889999999999997 999999998888888777666544
Q ss_pred cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 009231 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 186 (539)
+.+.+++..++.|++.+...|...+...|..|+ ++|++++++++...++|.
T Consensus 301 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~ 351 (399)
T PRK05122 301 ----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSL 351 (399)
T ss_pred ----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHH
Confidence 556677778899999998888888888888887 459999999999999999
Q ss_pred HHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCcee
Q 009231 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYV 228 (539)
Q Consensus 187 ~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~ 228 (539)
.+++.+.|++.++.||+..|++.+...+++.+..+...++.+
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999988877777666555444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=130.68 Aligned_cols=178 Identities=8% Similarity=0.020 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCC--------hhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNME--------TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s--------~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
+..++..++..........+++.|+. +.|.+ .+..+.+.+...+...++.++.|+++||+ |||+++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 34444555555555556677788875 45544 46779999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++..++..+....... +.+.+.+++..++.|++.+...+....++.|.+|+ +.|
T Consensus 289 ~~~~v~~~l~~~~~~~-------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~ 342 (418)
T TIGR00889 289 VAWALRFGFFAYGDPE-------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIR 342 (418)
T ss_pred HHHHHHHHHHHHcCcc-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHH
Confidence 9888877666642200 01245567778899999998889999999999998 559
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHhhhhccc------ccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 172 QSYFSWYY-VFVSASSIVAVTCIVYIQDN------LGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 172 ~~~~~~~~-~~~~lg~~~g~~i~~~l~~~------~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++++++.+ ....+|.++||.++|++.++ +||+..|.+.++..++..+..+...+
T Consensus 343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999997 56789999999999999887 46999999888776666665555444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=126.26 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWST 104 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~ 104 (539)
..++.....+.....++.|+++++|.++.+.+++.........++.+++|+++||+ |||+++..+.+...+...+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 285 (375)
T TIGR00899 207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD 285 (375)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566789999999999999999998887777788889999999997 99999988877655554444433
Q ss_pred hccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHH
Q 009231 105 TILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA 184 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 184 (539)
+ +.+.+.+.+.+.+++.+...+...++..|..|+ + ++++.++++...++
T Consensus 286 ~-----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~ 334 (375)
T TIGR00899 286 N-----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R-------AGAATTLYTNTGRV 334 (375)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h-------hhHHHHHHHHHHHH
Confidence 3 455666777888888888888888888888765 2 56889999999999
Q ss_pred HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 185 g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
|..++|.+.|++.+..||+..|++.++..+++.+..+
T Consensus 335 g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 335 GWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988887766666544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=126.42 Aligned_cols=169 Identities=11% Similarity=0.057 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+......++..+.......+.+.|. +++|.+..+.+.+.....++..++.++.|+++||+ |||+.+.++.+...++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 44444444455555555556667675 57899999999999999999999999999999997 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.+...... .+...++....+.+++.+...+..++++.|.+|++ +|++.+++.
T Consensus 285 ~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~ 336 (377)
T TIGR00890 285 AAMLFIPM---------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA-------NSAANYGFL 336 (377)
T ss_pred HHHHHccc---------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh-------hhhhHhHHH
Confidence 76665330 01223445567788888888888889999999984 489999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~ 217 (539)
+...++|..++|.+.|++.++.||++.|.+.++..+++.
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999998887665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=128.77 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.++......++...+++++..++|.|+++++|+|..+++.+.+.+.++..++.+++|+++||+ |||+++..+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 344444555666677788889999999999999999999999999999999999999999997 9999988877766665
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+..... +.....+..++.|++.+...|...+...+..|++ +++..++
T Consensus 285 ~~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~ 333 (394)
T PRK03699 285 MYLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA--------SPKLVNF 333 (394)
T ss_pred HHHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CHHHHHH
Confidence 55544333 3344555566788877777787777777776542 3556777
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
.....++|..++|.+.|++.+..|++..|++.++..+++.+
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 78888999999999999999999999999887776655544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-11 Score=124.18 Aligned_cols=174 Identities=9% Similarity=-0.056 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (539)
+......++.....++...+++.|+.+++|+|..+++++.....++..++.++.|+++||+ |||+.+ .+..+..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~ 285 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence 3333444555566666778889999888999999999999999999999999999999997 988654 44444444433
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
+..... .+.+.+.+..++.|++.+...+...+.+.+..|+ + |+++++++.
T Consensus 286 ~l~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~-------~~~~~g~~~ 335 (390)
T PRK03545 286 LLLPAA----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A-------TDVAMALFS 335 (390)
T ss_pred HHHHHh----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c-------HHHHHHHHH
Confidence 332211 1456667777888888887777777888776553 2 788999999
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 180 VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 180 ~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
...++|..+||.++|++.++.|++..|+..+.+.+++.+..+...+
T Consensus 336 ~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 336 GIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999998888777776655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=127.56 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=132.0
Q ss_pred HHHHHHHhhcchhhHHHHhhhhccCChh---HHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 009231 26 EAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (539)
.++.......+.++++.|+.+..+.... ..+.+.....++..++.+..|+++||+ |||+++..+.....++.++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3444555556677888888765442221 245556667778888889999999997 999999999888777766655
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
... +.+.+++.+++.|++.+...|...+++.+..|++ .|++.+++++...
T Consensus 307 ~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~ 356 (408)
T PRK09874 307 FVQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ-------IAGRIFSYNQSFR 356 (408)
T ss_pred Hhc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc-------cceeeehHHHHHH
Confidence 443 5566778888999999999999999988888773 3789999999999
Q ss_pred HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++|..+||.++|++.++.||+..|++.+.+.+++.+..+...+
T Consensus 357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887777766554333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=127.50 Aligned_cols=174 Identities=16% Similarity=0.074 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 009231 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (539)
....++..+++|....+++.|+++++|++......+.....+...++.++.|+++||+ ||||++..++++..++...+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999998776666667777788889999999997 999999888776655443333
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHH-
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVF- 181 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~- 181 (539)
.... . ..+...+++..++.+++.+...+..+++++|.+|++ .|+++.++.+..
T Consensus 335 ~~~~-~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~-------~r~tg~g~~~~~~ 388 (438)
T PRK09952 335 MALE-A------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS-------YRYSGAGVGYQVA 388 (438)
T ss_pred HHHH-c------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc-------hhHHHHhHHHHHH
Confidence 2210 0 012333444556667888877888899999999993 488888886555
Q ss_pred HHHHHHHHHHHhhhhcccc--cchhhhHHHHHHHHHHHHHHHhc
Q 009231 182 VSASSIVAVTCIVYIQDNL--GWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 182 ~~lg~~~g~~i~~~l~~~~--g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
..+|++++|.+.+++.+.. +|...+.+.+...+++.+..+..
T Consensus 389 ~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 389 SVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4589999999999997743 48888887777666666655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=124.37 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=125.2
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (539)
+...+.+.....++|.|+++ .|.++++++.+.+...++..++.++.|+++||+ |||+++..+.++..++..+.. .
T Consensus 210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~- 284 (381)
T PRK03633 210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h-
Confidence 33344455556778989864 699999999999999999999999999999997 999999888887776654432 1
Q ss_pred cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 009231 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 186 (539)
. ........+.+++.+...|...+.+.|..|+++ ++...+.+....++|.
T Consensus 285 ----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE-------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHH
Confidence 1 123345566777777778999998999888733 6777777778889999
Q ss_pred HHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 187 IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 187 ~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.+||.++|++.++++|++.|.+.+...++..+..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888777655544443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-11 Score=125.00 Aligned_cols=179 Identities=9% Similarity=-0.002 Sum_probs=138.4
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+..+.+.+..++...+++++..+++.|+++ +|++..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345555556666778888999999999975 899999999999999999999999999999997 999999998877777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+..... . +.... ...+.|++.+...|...+...+..+++ +.|++.++
T Consensus 283 ~~~~~~~~~---~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g 332 (393)
T PRK09705 283 GFCGFIWLP---L-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVA 332 (393)
T ss_pred HHHHHHHcc---c-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHH
Confidence 665544212 1 11112 234567888888887777777777542 34899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcCCce
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFY 227 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~~~~ 227 (539)
+.+...+++..++|.+.|++.++.| |...|.+.+...++...+.+...++.
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999876 78888887777766666655554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=133.63 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHH
Q 009231 57 NIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA 136 (539)
Q Consensus 57 ~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (539)
.......++..++.+++|+++||+ |||++++++.++.+++.++.++.. +...+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~ 654 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIAL 654 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHH
Confidence 334556688889999999999997 999999999999988888877655 34456666
Q ss_pred HHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHH
Q 009231 137 FGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (539)
Q Consensus 137 ~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~ 216 (539)
+++.+++.++..+...++++|++|+ +.|++++++.+....+|+++||.+++++.+. +...+|++.+++.+++
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 7778887778888999999999999 5599999999999999999999999988664 4567788777776666
Q ss_pred HHHHHh
Q 009231 217 ALSFFL 222 (539)
Q Consensus 217 ~~~~~~ 222 (539)
.++.++
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=126.03 Aligned_cols=166 Identities=11% Similarity=-0.038 Sum_probs=129.0
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (539)
...++....++....++|.|+. +.|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 304 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA 304 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555667777788899986 4799999999999999999999999999999997 9999988877666666555543
Q ss_pred hhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHH
Q 009231 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVS 183 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 183 (539)
.. +.+.+.+..++.|++.++..+...++..|.+|++ .|+++.++.+...+
T Consensus 305 ~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~ 354 (406)
T PRK11551 305 AP-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ-------VRGTGVGAAVAVGR 354 (406)
T ss_pred cC-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh-------hhhhhhhHHHHhhh
Confidence 32 4445556666778877777888899999999984 48999999999999
Q ss_pred HHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHHHH
Q 009231 184 ASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 184 lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+|..+||.+.|++.++. +|...+++.....+++.+..+
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998865 455566655555555444444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=126.69 Aligned_cols=167 Identities=13% Similarity=-0.011 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
..+......++....++....+++.|+++++|++..+.+.+.....+...++.+++|+++||+ |||+.+..+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 355666677778888888899999999999999999999999999999999999999999997 9999877655544433
Q ss_pred HH-HH-HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 98 MV-LL-WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 98 ~~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
.. +. .... ..+.+.+++...+.+++.+...+..++++.|.+|+++ |+++.
T Consensus 299 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~~~~~ 350 (394)
T TIGR00883 299 AVPLLMALLD---------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV-------RYTGA 350 (394)
T ss_pred HHHHHHHHhc---------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-------eeeEe
Confidence 31 21 1111 0145556677788888888888999999999999844 78888
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHH
Q 009231 176 SWY-YVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIM 213 (539)
Q Consensus 176 ~~~-~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~ 213 (539)
+.. .....+|..++|.++|++.++.| |+..++..+...
T Consensus 351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 874 44557899999999999999888 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=130.38 Aligned_cols=163 Identities=8% Similarity=0.006 Sum_probs=129.2
Q ss_pred HHHHhhcchhhHHHHhhhhc---cCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 009231 29 ERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (539)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 105 (539)
....+......++.|+.+.+ +.+..+.+.+.+...++..++.+++|+++||+ |||+.+..+.++..++..+.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~ 313 (420)
T PRK09528 235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc
Confidence 33344444456777776543 67778889999999999999999999999997 999999999888888887777655
Q ss_pred ccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH-HHHHHHH
Q 009231 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFVSA 184 (539)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~~l 184 (539)
+.+.+++.+.+.+++.+...+....++.+.+|++. |++.++. ++...++
T Consensus 314 -----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~~l 363 (420)
T PRK09528 314 -----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL-------SATIYLVGFQFAKQL 363 (420)
T ss_pred -----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-------eeeeeeehHHHHHHH
Confidence 56777788889998888877888888899998733 6666554 5667889
Q ss_pred HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 185 SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 185 g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
|.+++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 364 g~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 364 GAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888776655554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=125.67 Aligned_cols=163 Identities=7% Similarity=-0.042 Sum_probs=133.4
Q ss_pred hhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009231 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (539)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (539)
.+++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+..+.+++.++..+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 456677889999888999999999999999999999999999999996 888888888887777776665433
Q ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
+.....++.++.|++.+...+...+++.|..|+ +.|++++++++...++|..+||.+
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 455566777788888887777778899999998 559999999999999999999999
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
.|++.+..|++..+.+.+...++..++.....++
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888887776655554444444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=123.05 Aligned_cols=170 Identities=11% Similarity=0.039 Sum_probs=144.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++..+...++...+++....+.+.|++ ++|.++.++|.+.+...++..+..+++|++.||+ |+|+++.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 44566666777778888889999999996 5999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
...+.++++ +.+.++....+.|+..|...++...++.+. |++ .|+++.+
T Consensus 283 ~~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-------~~~~~q~ 331 (382)
T TIGR00902 283 RWAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-------EIAKLQA 331 (382)
T ss_pred HHHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-------hHHHHHH
Confidence 988887655 677788889999999999999999999987 763 3788888
Q ss_pred HHHH-HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 177 WYYV-FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 177 ~~~~-~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
+++. ...+|..+||.++|++.+++|+ ..|++.+.+.+++.++.
T Consensus 332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 8764 5679999999999999999986 66777777666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-12 Score=108.92 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=112.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHH
Q 009231 60 FIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGL 139 (539)
Q Consensus 60 ~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (539)
+.+.++..++.++.|+++||+ |||+.+..+.....++.++..... +.+.+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 345677888899999999997 999999999988888887776544 66778888999
Q ss_pred HHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHH
Q 009231 140 MSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 140 ~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~ 219 (539)
.|++.+...+...+++.|.+|++ +|++..++.+...++|..++|.+.+++.+..+|++.|++.+...++..+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPE-------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChh-------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984 48999999999999999999999999998889999999887766665555
Q ss_pred HHh
Q 009231 220 FFL 222 (539)
Q Consensus 220 ~~~ 222 (539)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-11 Score=126.92 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=115.1
Q ss_pred cchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009231 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (539)
Q Consensus 35 ~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (539)
.+..++|.|+++++|++..+++++.+...++..++.+++|+++||+ |||+++..+.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 4567899999989999999999999999999999999999999997 999998888766665544433221
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
..+.+...+...+.+....+..+...+++.|.+|+ ++|++.+++++...++|..+||.+.|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------EQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------HHhhcccchhhhhhhHHHHHHHHHHH
Confidence 01223333333333333333456677888999988 44899999999999999999999999
Q ss_pred hhcccccchhhhHHHHHHH
Q 009231 195 YIQDNLGWKVGFGVPAVIM 213 (539)
Q Consensus 195 ~l~~~~g~~~~f~i~~~~~ 213 (539)
++.++.||+..+...+...
T Consensus 424 ~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHhccCChHHHHHHHHHHH
Confidence 9999999988876655433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=123.53 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=131.4
Q ss_pred HHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 009231 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIL 107 (539)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~ 107 (539)
+..+.+..+..+.+.|+++ .|++. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++..+.....
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-- 300 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP-- 300 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--
Confidence 4445666777788888764 56654 45666677778888999999999997 999999999888888877766533
Q ss_pred CCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 009231 108 PGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSI 187 (539)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 187 (539)
+.+..++..++.+++.+...|...+.+.|.+|+ ++|++++++++...++|..
T Consensus 301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ 352 (392)
T PRK12382 301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYG 352 (392)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHH
Confidence 456667788889999988888888888998887 5599999999999999999
Q ss_pred HHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 188 VAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 188 ~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+||.+.|++.++.||+..|.+.+...+++.+..+.
T Consensus 353 ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 353 VSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988877776665543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-10 Score=112.60 Aligned_cols=345 Identities=16% Similarity=0.083 Sum_probs=187.5
Q ss_pred cchhhHHHHhhhhccC---Ch----hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH-HHHHHHHHHHHhhc
Q 009231 35 GFTPNMILYLCREYNM---ET----TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF-TCLLGMVLLWSTTI 106 (539)
Q Consensus 35 ~~~~~l~~yl~~~lg~---s~----~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~-~~~~~~~l~~~~~~ 106 (539)
.++.++|+|+++..+- ++ +..+...++..+...+..|.-|.++|+. |+||-....+. +..+...++.+..
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~- 110 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP- 110 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC-
Confidence 4556899999987654 22 4556667778888888899999999997 88776555444 3444444444433
Q ss_pred cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 009231 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 186 (539)
. ..+.+...+..++..++..+......+++.|..++++. ++..+.-+...++|+
T Consensus 111 --~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~-------~riS~lg~~~gylgs 164 (438)
T COG2270 111 --P-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNM-------GRISGLGWALGYLGS 164 (438)
T ss_pred --C-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcccc-------Ccccccccccccccc
Confidence 1 12455566667888899999999999999999988663 333344444455665
Q ss_pred HHHHHHhh--h-hc---------------ccccchhhhHHHHHHHHHHHHHHHhcCCceeecC-CCCCChhhHHHHHHHH
Q 009231 187 IVAVTCIV--Y-IQ---------------DNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK-ANTSLLPGLTQVLVAS 247 (539)
Q Consensus 187 ~~g~~i~~--~-l~---------------~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 247 (539)
.+.-+.+- . .. +...-|..+.+.++-.++..+=.++..++.++.+ +..+.+.+-.|-+...
T Consensus 165 ~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t 244 (438)
T COG2270 165 VILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKST 244 (438)
T ss_pred hHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 55443321 1 11 2223455565555544433332333222222111 1111111112222222
Q ss_pred HhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCC-CCeee
Q 009231 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVT-PNFEI 326 (539)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~ 326 (539)
+++-+. .++...|+-..+...+ -+.....+...++ +.+.+
T Consensus 245 ~k~i~~---------------------~~~i~~FLiA~~~~~D------------------Gv~til~~~~~fg~~~~gl 285 (438)
T COG2270 245 FKEIRG---------------------RKNLVLFLIARFFYID------------------GVNTILAMGGVFGAADLGL 285 (438)
T ss_pred HHHHhc---------------------ccchHHHHHHHHHHHh------------------hHHHHHHHHHHHHHHHcCc
Confidence 211100 0112222211111111 0000000100000 00001
Q ss_pred cCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccc
Q 009231 327 PSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRA 406 (539)
Q Consensus 327 ~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 406 (539)
+. .+...+.+..-+....-.-+.+++.+| ++.++.+.+++++..+..+...+.+
T Consensus 286 s~-----~~lll~g~~~~vvA~lg~ii~g~Ld~r---fg~k~vl~~~lvi~~~~~~~~~~~~------------------ 339 (438)
T COG2270 286 SS-----TELLLIGIALSVVAALGAIIAGFLDER---FGSKPVLMIGLVILSIAALYLIFLE------------------ 339 (438)
T ss_pred cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceeehHHHHHHHHHHHHHHHcc------------------
Confidence 11 111111111111111112222333334 6666788888887777666655554
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009231 407 VVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITK 476 (539)
Q Consensus 407 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~ 476 (539)
........-++.|...+-.....=++..+.+|+++.|...|++++.+..++.+||.+.+.+.+.++
T Consensus 340 ----~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 340 ----GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ----ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 122233344677777777778888899999999999999999999999999999999999988775
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-11 Score=125.81 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=121.4
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhc-cchHHH-HHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMI-GFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grk~~~-~~~~~~~ 94 (539)
+.++...+..++....+|+...++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. .....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 34555556666677778888999999999999999999999999899999999999999999961 334332 2222333
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++.++..... . .+....++...+.|.+.....+...++..|.+|+ +.|+++
T Consensus 333 ~~~~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~ 384 (452)
T PRK11273 333 TIATIVYWLNP---A------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTA 384 (452)
T ss_pred HHHHHHHHHhc---c------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------hhhhhH
Confidence 33333222211 0 1233333444444443322222334556788988 448999
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 175 FSWYYVFVSASSIV-AVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 175 ~~~~~~~~~lg~~~-g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+++.+...++|+.+ +|.+.|++.++.||+..|++.+...+++++...
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999988998655 799999999999999999988877666655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=123.24 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 009231 23 IANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLW 102 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~ 102 (539)
.....+......+...+++.|+.+++|++..+.+++.....++..++.++.|+++||+ |||+.+..+..+..+......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 322 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVF 322 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHH
Confidence 3344444555566778899999999999999999999999999999999999999997 999999888776533322221
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
... .+.+.+.+...+.+++.+...+...+++.|.+|++ .|++++++.+...
T Consensus 323 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~ 373 (405)
T TIGR00891 323 AIG----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD-------QRAAGLGFTYQLG 373 (405)
T ss_pred HhC----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc-------hhHHHhhHHHHHH
Confidence 111 14445555556667766777788889999999884 4899999999999
Q ss_pred HHHHHHHHHHhhhhccccc-chhhhHH
Q 009231 183 SASSIVAVTCIVYIQDNLG-WKVGFGV 208 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g-~~~~f~i 208 (539)
++|..++|.+.|++.++.| |+..|..
T Consensus 374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999888 8776654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=119.80 Aligned_cols=177 Identities=18% Similarity=0.079 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH-HHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM-IGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~-~~~~~~~~~ 95 (539)
|..+..+...++....++.+..+++.|+++++|.+..+.+++.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4556666677888888888999999999999999999999999999999999999999999997 99861 111111111
Q ss_pred HHHH---HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 96 LGMV---LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 96 ~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
++.+ +..... .. ..+.........+.+.+.+ ..+...+++.|.+|+ +.|+
T Consensus 294 ~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~g 346 (399)
T TIGR00893 294 IAGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-------NIAG 346 (399)
T ss_pred HHHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------hHHH
Confidence 1111 111111 00 0022223333333334433 788999999999998 4489
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHH
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~ 221 (539)
+++++.+...++|..++|.+.|++.+..| |...|.+.+...+++.+..+
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 99999888777666555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=122.07 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=147.4
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhh-hccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccc-hH
Q 009231 8 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-YR 85 (539)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr-k~ 85 (539)
+....+.+||.+++...+.++..+.++...+..-+|+++ +.+-+.+-.|+++++..++..++.+..|+.+.|. |+ |+
T Consensus 25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~ 103 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKK 103 (488)
T ss_pred cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCccc
Confidence 334667889999999999999999999999999999875 5888999999999999999999999999999996 76 77
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCC
Q 009231 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (539)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~ 165 (539)
-++.|+++.++|.++.....-.|. ...+.++++|++.|+|.+. ....-+++++....++
T Consensus 104 Pli~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d-- 162 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED-- 162 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc--
Confidence 888899999999988843332332 2577899999999999776 4677888998666644
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc----cc------c---cchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ----DN------L---GWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~----~~------~---g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
|.++++....+..+|.++||.+...+. +. . -|..+-|+.+++.++.+++.....++
T Consensus 163 -----R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 163 -----RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred -----hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 788888877777788888877654432 11 1 13455566666666666555444333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-11 Score=119.13 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhc-cchHHHH-HHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV-GRYRMIG-FGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~-Grk~~~~-~~~~~~ 94 (539)
|.+|.+++..++.-+.=|++.-+.|.|+.+..|+|..++++..+.+-+++..+.++.||+|||.+ |||...- ++++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 67889888999988888999999999999999999999999999999999999999999999998 7776543 333344
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++..+...++ ..+..+..+....+|+-.-+-+-..-....|..|+ +.-+++
T Consensus 332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------hhccch
Confidence 44444444333 12445555666666665554443344556788887 447999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhc
Q 009231 175 FSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 175 ~~~~~~~~~l-g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
.|....+..+ |...+....|++.+.+||...|.+..+..+++.+.....
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999998777666665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=122.76 Aligned_cols=179 Identities=14% Similarity=0.049 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhcc--chHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG--RYRMIGFGCFTCL 95 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rk~~~~~~~~~~~ 95 (539)
.++.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 34555555566666777788899999988999999999999999999999999999999999622 2222222211111
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
+........ +. .+.....+..++.|++............+|.+|+ +.|+++.
T Consensus 324 ~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~ 375 (434)
T PRK11663 324 LSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAAT 375 (434)
T ss_pred HHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHH
Confidence 111111111 11 0222222333334433222222234556788877 4599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~ 224 (539)
++.+...++|..++|.+.|++.++.||...|++.+...+++.+..+...
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887776665554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=121.53 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=151.6
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccch--HHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY--RMIGFGCFT 93 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk--~~~~~~~~~ 93 (539)
.|.+..-++..++-+-+...+..+...|.++++|++..+...+....++.+.++.++.|++.||+ |.| +++++++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 46666667778888889999999999999999999999999999999999999999999999997 999 898888877
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+.+..+...+.- .+.. ....+.+.+++.-++.|+..|..++..-++.++..|+++ .+.
T Consensus 359 ~~~i~~~g~~G~-~~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-------e~e 416 (477)
T PF11700_consen 359 WIIIPLYGLFGF-WPSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-------EAE 416 (477)
T ss_pred HHHHHHHHHHHh-hhcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-------hhH
Confidence 644333322200 1110 001266778888889999999999999999999999955 699
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHh
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.++.+.......+.+||++.|.+.+..| .|.++....++.++++++...
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998876 889988877777777766644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-09 Score=112.58 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=117.1
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh--cc--chHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY--VG--RYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~--~G--rk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (539)
-...|+++++|+++.+.....+...+-- ..-++.|.++|.+ +| ||+-++++.++..++...++..+..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 3455778999999999887765544443 3456788999987 24 4445666776665555555543210
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
..+.....+...+..+|........-++..|...++. +.|+...+..+....+|++++..++|
T Consensus 83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-----~~~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-----ESRGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-----chhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1134445566677889999888999999999887765 33888889999999999999999999
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 195 YIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 195 ~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
.+.++.+++..|.+.+.+.++..+..+...+
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988776665544443333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=118.53 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHH-HHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-FGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-~~~~~~~ 95 (539)
|.++......++...++++...++|.|+ +++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 3345555567777888899999999998 46999999999999999999999999999999997 9988764 3333333
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++...+....... ..+.+..++..++.|++.+...+ ..+...+.. ++ .|++++
T Consensus 300 ~~~~~l~~~~~~~------------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~-------~~g~~~ 352 (402)
T TIGR00897 300 IFTLALYYIPQHF------------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PK-------HKGAAM 352 (402)
T ss_pred HHHHHHHHHHHcc------------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cc-------hhHHHH
Confidence 3333332211000 01445556667777887776654 345556643 32 389999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
++.+...++|..++|.+.|.+.+..||...|++.++..+++.+...
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=122.03 Aligned_cols=152 Identities=11% Similarity=-0.007 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL-LW 102 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l-~~ 102 (539)
...++....++++..++|.|+++.+|++..++++......++..++.+++|+++||+ ||||++..+.....+.... ..
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 344456677888899999999988999999999998888999999999999999997 9999988765543322211 11
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
... + ..+.........+.+++.+...+...+++.|.+|++. |+++.++.+...
T Consensus 324 ~~~--~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-------rg~~~g~~~~~~ 376 (434)
T PRK15075 324 WLV--A------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-------RTAGFSLAYSLA 376 (434)
T ss_pred HHH--c------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-------cchheeHHHHHH
Confidence 111 0 0122233344445566666767777788999999844 888888865555
Q ss_pred H-HHHHHHHHHhhhhcccccch
Q 009231 183 S-ASSIVAVTCIVYIQDNLGWK 203 (539)
Q Consensus 183 ~-lg~~~g~~i~~~l~~~~g~~ 203 (539)
+ +++.++|.+.|++.++.|+.
T Consensus 377 ~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 377 TAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHhhhHHHHHHHHHHhcCCc
Confidence 4 45788999999999988854
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=120.49 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=135.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh-ccchHHHHHH--HHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY-VGRYRMIGFG--CFT 93 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~-~Grk~~~~~~--~~~ 93 (539)
|.++..+...++..++++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||+ .++|+...++ ++.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 34555555667777888888899999986 5899999999999999999999999999999984 1344433333 333
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
..++.+++..+. +.+.+++.+++.|++.+...++..+++.|.+|+ +.+++
T Consensus 320 ~~l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------~~~g~ 369 (455)
T TIGR00892 320 NGLTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------QRFSS 369 (455)
T ss_pred HHHHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------HHHhh
Confidence 333334443333 566777889999999999999999999999988 44899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~ 219 (539)
.+++++...++|..+||.+.|++.+.. +|+..|++.++..+++.+.
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999999998877 5999999988766655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-10 Score=118.16 Aligned_cols=173 Identities=12% Similarity=-0.013 Sum_probs=122.2
Q ss_pred HHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 009231 31 MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGA 110 (539)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (539)
...+.+..+.+. +.+++|++..++++......++..++.+++|+++||+ |||+.+.+++++..++.++..+......
T Consensus 298 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 374 (481)
T TIGR00879 298 TGINAIMYYSPT-IFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV- 374 (481)
T ss_pred hCCeehHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 333344444554 4567899999999999999999999999999999997 9999999998888887777663220000
Q ss_pred CCCCcccccCCCCCCCccchHHHHHHHHHHHhh-ccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 009231 111 KPPACDQLRNGCESATWSQLMPLYFAFGLMSLG-SGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189 (539)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g 189 (539)
. ..... .....+....+.+.+ .....+...+++.|.+|+ +.|+++.++.+...++|.+++
T Consensus 375 ~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~lg~~i~ 435 (481)
T TIGR00879 375 T-----------GSSKS-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------SLRPKGISIAVAANWLANFIV 435 (481)
T ss_pred C-----------Ccccc-hhHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 012222222222222 223456777888999998 448999999999999999999
Q ss_pred HHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 190 ~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
|.+.+++.++.+|++.|++.++..+++.+..+...+
T Consensus 436 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999998899999999888877776666554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-10 Score=112.91 Aligned_cols=177 Identities=14% Similarity=0.034 Sum_probs=145.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.++..+...++...+.|...+++-+|+++.-|+|.+..+++...+.++..++.+++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 567788888999999999999999999999999999999999999999999999999999999 888988888888877
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
..+.+.+.. .+.+...+..++.|+.........+.-.++..|+ .++.+.+
T Consensus 289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~--------~~~~a~s 338 (394)
T COG2814 289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPD--------AADLAGS 338 (394)
T ss_pred HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC--------chHHHHH
Confidence 777766544 1444555555566666655555555555553333 2688899
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++....|+|..+|..++|.+.+++|+....++.+...+++.+..+...+
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888777665444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=120.45 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=125.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.....+...++...++.....+.|.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++..+..+..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455556667777777766667788888878999999999999888888888889999999997 999999999887777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+..... . ..+.+.+.+..++.|++.+...+..+++..+..|++ .++.+++
T Consensus 340 ~~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~ 392 (471)
T PRK10504 340 VSLLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN-------LASSGNS 392 (471)
T ss_pred HHHHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------hccchHH
Confidence 766655422 0 012333445566778888888888889999999884 4899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
+.+...++|..+|+.++|.+.+..++
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988766554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=119.78 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHH-HHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIF-IWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~-~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
+.++...++..++.+....+.++|+.+++|+|..+.+.+.. ...++..++.+++|+++||+ ||||.+.++.++.+++.
T Consensus 225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 33333445555666666778899988889999999999975 55678889999999999997 99998877666555544
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
+........+ .+...+.+...+..++.|...++..++..+..+++. +++.+++.
T Consensus 304 l~~~~l~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~-------~~t~~gl~ 357 (491)
T PRK11010 304 AGYWLLSITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF-------SATQFALL 357 (491)
T ss_pred HHHHHHHhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------cHHHHHHH
Confidence 3322111000 133334444555555555555667888888888744 68889999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcC
Q 009231 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~ 224 (539)
+...++|..+++.+.|++.+..||+..|.+.++..+.+.+.....+
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999999999999999988888877766665543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-10 Score=117.23 Aligned_cols=167 Identities=17% Similarity=0.023 Sum_probs=110.3
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-hh
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS-TT 105 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~-~~ 105 (539)
++....+|+...++|.|+.+++|++..+++...+...+...++.++.|+++||+ |||+++.++.++.++....... ..
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778899999999999999999999999988888888889999999999997 9999887776654333322211 11
Q ss_pred ccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHH-
Q 009231 106 ILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSA- 184 (539)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~l- 184 (539)
. ..+....+....+...+.+...+...++.+|.+|++ .|++++++.+...++
T Consensus 332 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~-------~r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 332 N--------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ-------VRALGVGLSYAVANAL 384 (432)
T ss_pred c--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------ccchhhhHHHHHHHHH
Confidence 0 001221111112222233333455678889999994 489999998877654
Q ss_pred HHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHh
Q 009231 185 SSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 185 g~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~ 222 (539)
++...|.+.+++. ..| |...++..++..+++.+..+.
T Consensus 385 ~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3555787777664 345 555666555555555554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=106.07 Aligned_cols=348 Identities=15% Similarity=0.089 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHHHhhcch---hhHHHHhhhhccCChhH-HHHHHHHH----HHHHHhhHHHHHHHHHhhccchHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFT---PNMILYLCREYNMETTA-ATNIIFIW----TAATNFLPIVGALLADSYVGRYRMIGFG 90 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~lg~s~~~-~~~i~~~~----~~~~~i~~~~~G~laDr~~Grk~~~~~~ 90 (539)
..-+....+...++.+... .....+.....+.+... .+...... .+...+..++.|.++||+ |||..+...
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~ 98 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLP 98 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHH
Confidence 3444446666666666666 45555554444332221 22222223 567788899999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhh--ccCccccchhhhcccCCCCCCCccc
Q 009231 91 CFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLG--SGGIRSSSLAFGAEQLDKGDGTKSK 168 (539)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g--~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (539)
+....+......+.. +.+.+ +.++. .+.+.....++++|...+
T Consensus 99 ~~~~~l~~~~~~~~~-------------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~------- 143 (463)
T KOG2816|consen 99 LFGTILPALCLLFQG-------------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSE------- 143 (463)
T ss_pred HHHHHHhHHHHHHHH-------------------------HHHhh---hcccccchhhhhhhhhhheeeccch-------
Confidence 888777766666522 22222 33333 334567778889999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCC-ChhhHHHHHHHH
Q 009231 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTS-LLPGLTQVLVAS 247 (539)
Q Consensus 169 ~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 247 (539)
+.|...+++.......+..++|.+++.+.+..|.-.+|.+.++..++..+-.+...|+...++.+.+ +..
T Consensus 144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~--------- 214 (463)
T KOG2816|consen 144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR--------- 214 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc---------
Confidence 4599999999999999999999999999999999999999999888887776666665433322211 000
Q ss_pred HhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh------hh--------
Q 009231 248 FKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE------QA-------- 313 (539)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------q~-------- 313 (539)
.......+.+...+.-+...+.. ..+..+.++... ..
T Consensus 215 ----~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~r~~l~l~l~~~~~~~~~~~~~~~~~~ 265 (463)
T KOG2816|consen 215 ----ELTPGSLDSSHVADAFQSLTKVG-------------------------PDRLLLLLLLVAFLSSLPEAGGASDVLL 265 (463)
T ss_pred ----ccCCCcccchhhhhhhhhhcccC-------------------------CCccchHHHHHHHHHHHHHhcCceeEEE
Confidence 00000000000000000000000 011111111111 00
Q ss_pred hhccCCCCCCeeec-CcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 314 SSMDRHVTPNFEIP-SGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARR 392 (539)
Q Consensus 314 ~~~~~~~~~~~~~~-~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~ 392 (539)
...+..++ |... .+.+.........+ ...+..|+..+. ...+..+..|+..-.+..++.++.+
T Consensus 266 ~yl~~~f~--w~~~~~s~~~~~~~~~~~i----~~l~~~~~l~~~------l~~~~~i~lGl~~~~~~~~~~af~~---- 329 (463)
T KOG2816|consen 266 LYLKAKFG--WNKKEFSDLLSLVSILGII----SQLLLLPLLSSI------LGEKRLISLGLLSEFLQLLLFAFAT---- 329 (463)
T ss_pred EEEeeecC--cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------HhhhhHhhHHHHHHHHHHHHHHHhc----
Confidence 01111111 0000 01122222222222 222234444443 3334488999999999999998886
Q ss_pred HhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 393 SIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 393 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
..|.+. .............|+..+++...++++.+|+++++......+.+.+++.+.+.+.
T Consensus 330 ------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 330 ------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred ------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 444333 4455666677889999999999999999999999999999999999999988876
Q ss_pred hhh
Q 009231 473 DIT 475 (539)
Q Consensus 473 ~~~ 475 (539)
..+
T Consensus 391 ~~t 393 (463)
T KOG2816|consen 391 ALT 393 (463)
T ss_pred HHH
Confidence 555
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=108.84 Aligned_cols=362 Identities=11% Similarity=0.089 Sum_probs=212.3
Q ss_pred hhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 009231 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (539)
Q Consensus 37 ~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (539)
-.-+-++..++.+.+..+..++.+.++.-+.+.+.++|++.||.+|-|..-++-+.+..+|-+..+...
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg----------- 131 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG----------- 131 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-----------
Confidence 345667778888889999999999999999999999999999998988765555555566766665322
Q ss_pred cccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009231 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYI 196 (539)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l 196 (539)
....+|.+..+|++.|+|.-....+-+.++..++.. ++...+++++.....+|+.+-..+.+++
T Consensus 132 ---------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------KELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 132 ---------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------KELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred ---------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-------ccccchhhHHHHHHHhhceeeeeecHHH
Confidence 011578899999999999888888888999999987 4489999999999999999888888888
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCC--Cc--c
Q 009231 197 QDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKG--SM--R 272 (539)
Q Consensus 197 ~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~ 272 (539)
.++.+-..+ ......+++...+-. ....+.+..+...... +. ..+...+.++. .+ +
T Consensus 196 y~~~~~~~~---~~ghT~LG~~l~~~~--------------~tc~~slical~lg~~--D~-rAerilh~e~g~~Ge~pk 255 (459)
T KOG4686|consen 196 YDTMGRMFP---GVGHTLLGLWLCFEV--------------KTCKQSLICALSLGLS--DD-RAERILHLEEGFLGEEPK 255 (459)
T ss_pred HHHHHHhcc---cchHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhh--hh-HHHHHHhhhcCcccCCcc
Confidence 766542211 011111111111000 0000000000000000 00 00111111110 00 0
Q ss_pred cCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchh----Hh-----------hhhhccCCCCCCeeecCcchhhhhHH
Q 009231 273 LMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCT----VE-----------QASSMDRHVTPNFEIPSGSFNIFAIL 337 (539)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------q~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (539)
++. . ...+.+++... .. +....+ .. .+++..-++++..
T Consensus 256 Ltd--v--------------------~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~-rf----GlS~~~a~~i~s~ 308 (459)
T KOG4686|consen 256 LTD--V--------------------NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQK-RF----GLSAVSAGNILST 308 (459)
T ss_pred ccc--c--------------------cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hh----CCChhhccchhhh
Confidence 100 0 01112211111 10 111111 11 1444444444443
Q ss_pred H---HHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHH
Q 009231 338 T---LTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMW 414 (539)
Q Consensus 338 ~---ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 414 (539)
. ..+..|+ ...+.+|.+++ . ..+..+.+...++=..+.+.. .+++
T Consensus 309 vy~Isav~spv----fg~i~Dk~G~n---~---~wv~~a~~~tl~~H~~l~Ft~---------------------lsPy- 356 (459)
T KOG4686|consen 309 VYGISAVLSPV----FGAISDKYGFN---L---WWVASACILTLLGHSGLFFTF---------------------LSPY- 356 (459)
T ss_pred hhhhhhhhhhh----HHHhHhhhcce---e---hhHHHHHHHHHHHhhhHHhhh---------------------ccHH-
Confidence 3 2334444 33445676654 2 345555555555544444332 2343
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchh
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYD 494 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 494 (539)
..+.+.|+...+..-+.+-.+...+|+++-|++.|.....+++|-.+.+.+.+.+.+..+ ++ .+.+
T Consensus 357 --~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y-------~~le 422 (459)
T KOG4686|consen 357 --TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY-------DNLE 422 (459)
T ss_pred --HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch-------hhHH
Confidence 356677887777777777788889999999999999999999999999998887664321 11 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 009231 495 YYYWLLTALSMANFLYYLACCKAY 518 (539)
Q Consensus 495 ~~f~~~~~~~~v~~~~~~~~~~~~ 518 (539)
.+|..+..+++....+.+...++.
T Consensus 423 ~ffl~~~~~aL~svgil~~~N~kq 446 (459)
T KOG4686|consen 423 AFFLIIGLMALTSVGILFYLNKKQ 446 (459)
T ss_pred HHHHHHHHHHHHHHHHHhheeccc
Confidence 566666666666666655544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-09 Score=107.47 Aligned_cols=342 Identities=12% Similarity=0.015 Sum_probs=201.0
Q ss_pred hhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 009231 38 PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (539)
Q Consensus 38 ~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (539)
.....|.++.+| +.+.+-|...+|.+.+......+-|+.|++ |-|...+++.....+|..+=..+. .|.+.
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~------ 135 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP------ 135 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc------
Confidence 455667777888 888899999999999999999999999997 999999999999999988877665 44211
Q ss_pred ccCCCCCCCccchH--HHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 118 LRNGCESATWSQLM--PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
..++ +.+.+..+.+...-.+.....-..+-+||+++ |..+...-.++..+|.++|.++...
T Consensus 136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q-------ra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ-------RAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-------hhhhhhHHHhcchHHHHHHhhccce
Confidence 1344 67788888888777776666677788999944 8888888777888888888888777
Q ss_pred hcccc------cchh--hhHHHHHHHHHHHHHHHhcCCceeecCCCCCCh----hhHHHHHHHHHhhccCCCCCCCchhh
Q 009231 196 IQDNL------GWKV--GFGVPAVIMLLSALSFFLASPFYVKSKANTSLL----PGLTQVLVASFKNRRTKLPTQATEEM 263 (539)
Q Consensus 196 l~~~~------g~~~--~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~ 263 (539)
+..+. .|.. .|+..+.+..+.+....+..++.++.++..+.. .+..+.++..++++.+...
T Consensus 199 lV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il------- 271 (480)
T KOG2563|consen 199 LVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL------- 271 (480)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH-------
Confidence 76543 3544 344444444444444444444444333321110 0122222222222111000
Q ss_pred hccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHHHH
Q 009231 264 YHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWI 343 (539)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 343 (539)
...+...+. ..+. -...++..+- ...++. ..........++..
T Consensus 272 --------~~~ygi~~g----------------------~F~~-----l~~~l~~~l~-~sgY~~-~~aG~ig~l~iv~G 314 (480)
T KOG2563|consen 272 --------AICYGIGLG----------------------LFNS-----LSTLLNLALC-PSGYEG-VFAGYIGALMIVAG 314 (480)
T ss_pred --------HHHHhhhHH----------------------HHHH-----HHHHhhhccc-cccCCc-cccchhHHHHHHHH
Confidence 000000000 0000 0011111110 000111 22222333444445
Q ss_pred HHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHH
Q 009231 344 GLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSG 423 (539)
Q Consensus 344 ~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g 423 (539)
.+...+...+.+|.+ ..+..+.+-+....++.+.+.... ...-..+.++....+.|
T Consensus 315 mlga~~~gii~Dktk------~fk~~~~v~~~~~~v~~~~l~~~t------------------~~~~~~viv~~t~~~~g 370 (480)
T KOG2563|consen 315 MLGALASGIIADKTK------KFKLTTLVLYLFALVGTLMLLTCT------------------LFLGDSVIVFTTCGLLG 370 (480)
T ss_pred HHHHHHHHhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHhh------------------ccCCceEehhhhHHHHH
Confidence 555555555666642 233334444444444422222221 01113334555567788
Q ss_pred HHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 424 LAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 424 ~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
..+....|...|+..|..=+...|+..|+.+..+++-+.+=..+.+...+
T Consensus 371 ~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~ 420 (480)
T KOG2563|consen 371 FFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE 420 (480)
T ss_pred HhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence 88888999999999998777788899999999888777776666666543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=120.57 Aligned_cols=165 Identities=12% Similarity=0.004 Sum_probs=134.0
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 009231 4 EPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR 83 (539)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr 83 (539)
+|+.+.+..++ |.+.......++...++++...+++.|+++.+|+|+.++|.......++..++.+++|++.||+ ||
T Consensus 248 ~p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~ 324 (495)
T PRK14995 248 RPMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GL 324 (495)
T ss_pred CCCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 45555444443 4455555677777788888889999999999999999999999999999999999999999997 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCC
Q 009231 84 YRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGD 163 (539)
Q Consensus 84 k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~ 163 (539)
|+.+..+.++..++..++.... . ..+.+......++.|+|.|...+.....+.+..|+
T Consensus 325 ~~~~~~g~~~~~~~~~~l~~~~-~-------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-- 382 (495)
T PRK14995 325 RLVATGGMALSALSFYGLAMTD-F-------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-- 382 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-C-------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--
Confidence 9999999888888776665422 0 11344456677889999999888888888888888
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009231 164 GTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (539)
Q Consensus 164 ~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~ 198 (539)
++++.+.++++...++|..+|+.+.|.+.+
T Consensus 383 -----~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 383 -----EKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -----HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999999999999988864
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-10 Score=113.20 Aligned_cols=155 Identities=11% Similarity=0.065 Sum_probs=128.2
Q ss_pred chhHHHHHHHHHHHHHhhcch-hhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFT-PNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|.++..+...++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 344555555666666666666 6778888777999999999999999999999999999999997 99999998877777
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++..+..+.. . +.+.+.+..++.|++.+...+...+++.|..|+ +.|++..
T Consensus 289 ~~~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~ 339 (365)
T TIGR00900 289 LAILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVF 339 (365)
T ss_pred HHHHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence 7766665433 0 256677788899999999999999999999998 5599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLG 201 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g 201 (539)
++++...++|..++|.+.|++.++.|
T Consensus 340 ~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 340 GAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999987654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=112.63 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=151.7
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
.|..|......+..--+|.++..+++.|+++++|.+..++|.+...+.+.+.+..++||+||||+ |.+|+.++....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46788888888888888999999999999999999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++..+.++..+... ...+...+....+...+..|.-..++..++...+|++ -+...
T Consensus 296 ~~~~~l~~~~~~~~----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~--------~G~v~ 351 (417)
T COG2223 296 LAAALLSLFLTGFG----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE--------TGAVT 351 (417)
T ss_pred HHHHHHHccccccc----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh--------hhHHH
Confidence 88887775431100 0124455555566677777777778888999988863 47888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcCCce
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFY 227 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~~~~ 227 (539)
++.....++|+..-|...+...+..| +...|++.....+++.++.+..+.+.
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89888999999888988898888777 88999998888877777665554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=112.02 Aligned_cols=176 Identities=16% Similarity=0.042 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHH-HHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
..+..+...++...+.+....+.+.|+.+ +|+++++.|++...... ...++.+++|++.||+ |+||++..+.++..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34445556667777777777888899865 79999999999887765 5566788999999997 999999888776533
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
............. ..+....+....+.+++.|...+...+...+..++++ .+++.++
T Consensus 287 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~g~~~~ 343 (390)
T TIGR02718 287 LALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD------QAGTDVT 343 (390)
T ss_pred HHHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------chHHHHH
Confidence 3322221110000 0123333444455566677777777777777766522 3799999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
..+...++|..+||.++|++.++.||+..|.+.+...+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887776665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=111.64 Aligned_cols=167 Identities=12% Similarity=0.029 Sum_probs=130.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++..+...++....+.....+++.|++ +.|+++.+.|.+.+...++..+...+.|++.||+ |+|+++..+++...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 34454555566666777777888999985 5899999999999988888888999999999997 999999999988888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++.+..+ +.+.+++..++.|++.+...+....++.+. ++ +++++..+
T Consensus 283 ~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~ 331 (382)
T PRK11128 283 RWGLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------SEVIRLQA 331 (382)
T ss_pred HHHHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------hhhHHHHH
Confidence 777666544 677778888999999998888888887775 44 22577788
Q ss_pred HHH-HHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHH
Q 009231 177 WYY-VFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSA 217 (539)
Q Consensus 177 ~~~-~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~ 217 (539)
.+. ....+|..+||.++|++.+++|+ ..|+..+.+.++++
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 765 44578889999999999999887 45665555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=115.17 Aligned_cols=165 Identities=13% Similarity=-0.009 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhh-hccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH-HHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCR-EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM-IGFGCFTCL 95 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~-~~~~~~~~~ 95 (539)
..+......++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +....+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 34455566777888899999999999976 3578889999999999999999999999999997 87774 344443443
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++. +..... + +.....++..+.++|.....+...+...|.+|+ +.|++++
T Consensus 322 ~~~-~~~~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~ 371 (412)
T TIGR02332 322 AGW-LLASAT--D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAI 371 (412)
T ss_pred HHH-HHHHhc--C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHH
Confidence 332 222111 0 111122222233333333333334444566776 5599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIM 213 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~ 213 (539)
++.+...++|.+++|.+.|.+.++.| |+++|++.++..
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 99999999999999999999999875 999988776643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=116.40 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
++......++....++++..++|.|+++..|++..++++....+.+...++.+++|+++||+ |+++....++....+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHH
Confidence 44444555666677788889999999998999999999999999999999999999999997 76543333433222211
Q ss_pred HH-HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 99 VL-LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 99 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
.. ..+.. .+. .+.+...+..++.|++.............|.+|+ +.|+++.++
T Consensus 332 ~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 385 (438)
T TIGR00712 332 IAVIVYWM-NPA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAGF 385 (438)
T ss_pred HHHHHHHh-cCC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------hheeeehhh
Confidence 11 11111 000 1223333333444443322222223456788887 448999999
Q ss_pred HHHHHHHHH-HHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 178 YYVFVSASS-IVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 178 ~~~~~~lg~-~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.+...++|+ ++||.+.|++.++.||..+|++.+...+++.+..+.
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 988888874 689999999999999999998877766555555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-10 Score=118.46 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=128.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++...+..++..+.+++...++|.|+++.+|+++.+++++.....++..++.++.|++.||+ |||+++.++..+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4455556667777788888889999999999999999999999999999999999999999997 999999999888888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+..... .+ ..+.+.+....++.|+|.+...+.......+.+|+ +.|+++.+
T Consensus 334 ~~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~ 387 (485)
T TIGR00711 334 GFYWRAFTF-TP------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSS 387 (485)
T ss_pred HHHHHhccC-CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHH
Confidence 877665321 01 11345566667889999988887777777888887 44899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDN 199 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~ 199 (539)
+++...++|..+|+.+.+.+.++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-09 Score=109.58 Aligned_cols=170 Identities=9% Similarity=-0.070 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.++.......+....++......|.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.+...++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444444445555556666788898889999999999988878888889999999999997 9999999998888888
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+........ ..+.+.+.++.++.++|.+...+...+..... +++ .|++..+.
T Consensus 295 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~-------~~g~~~~~ 348 (406)
T PRK15402 295 LLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDV-------SKGTVSAA 348 (406)
T ss_pred HHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccc-------cccHHHHH
Confidence 77766543111 11345566778889999888777766655433 332 27999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIML 214 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l 214 (539)
.+....+|..+|+.+.+++.+..++....+..+...+
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 9999999999999999999887776654444443333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=112.15 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=106.9
Q ss_pred HhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 009231 32 ATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAK 111 (539)
Q Consensus 32 ~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (539)
..+.+..++|.|+++ .|+++.+.+.+.+...++..++.++.|+++||+ |||+++..+.++..++..+..... .
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~-- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q-- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c--
Confidence 334466788988875 699999999999999999999999999999997 999999988877666554443221 0
Q ss_pred CCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 009231 112 PPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191 (539)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~ 191 (539)
.+...+.......+.+..+..+..++++.|.+|+ +.|+++.++.+...++|+.++|.
T Consensus 319 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 319 ----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------EVRGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred ----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------HHHhhhhhHHHHHHhHHHHHHHH
Confidence 0111111222222223333345566788999998 45899999999999999999999
Q ss_pred HhhhhcccccchhhhH
Q 009231 192 CIVYIQDNLGWKVGFG 207 (539)
Q Consensus 192 i~~~l~~~~g~~~~f~ 207 (539)
+.|++.++.|+....+
T Consensus 376 ~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 376 AATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHcccHHHHHH
Confidence 9999999888665433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=111.03 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+..++..++...+.+....++++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34443444444455555566778898888999999999999999999999999999999997 99999999888877776
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
++..... .+.+...+...+.+.|.+...+.......+..+++ +.++.+ ..
T Consensus 280 ~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~--~~ 329 (382)
T PRK10091 280 LMLFFFG----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG------ELLGAA--GG 329 (382)
T ss_pred HHHHHHH----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc------hHHHHH--HH
Confidence 5554322 02233444444555555444444443333333321 224443 33
Q ss_pred HHHHHHHHHHHHHHhhhhccc-ccchhhhHHHHHHHHHHHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQDN-LGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~-~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+...++|..+||.++|++.++ .+|+..+.+.++..++......
T Consensus 330 ~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 330 QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 566789999999999999885 6899999988776665554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=117.29 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=124.4
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++..++..++..++++......+.|++..+| +..+.+++.....++..++.++.|+++||+ |||+++..+.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 445555666777777777666666666665566 566777788888899999999999999997 999999999888888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++..+.. .+.+.+++..++.+++.+...+...++++|..|.++....++.++.+++
T Consensus 300 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 300 GYLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 776665422 1445566677788899998899999999998875432111144789999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccch
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~ 203 (539)
+++...++|..+++.+.|++.+..||.
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999988766663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=111.44 Aligned_cols=171 Identities=10% Similarity=0.039 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhc---cCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
++..+...++....+.......+.|+.+.+ +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++.+
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence 334334444444444455556788887765 56677788888888888999999999999997 99999999988888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++..+...+. +.+.+++...+.+++.+........+..+..|+ +.+++..
T Consensus 296 l~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~at~~ 345 (396)
T TIGR00882 296 VRIIGSSFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------RLSATIY 345 (396)
T ss_pred HHHHHHHhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------ceEEEee
Confidence 8776655433 566677778888888765555555556666655 2355555
Q ss_pred HH-HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 176 SW-YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 176 ~~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
+. ++....+|.++++.+.|++.+..||+.+|.+.++..++..++.
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 55 5678899999999999999999999999999888766655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=113.86 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
+..++...++..+....+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+|+ ++++.+..+.+.++++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence 33444455555566566677889999999999999999999999999999999999999996 99999999999888888
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
+.++++. +.+...+..++.|++.....+...+.+.+..|+ +.|++.++++
T Consensus 299 ~~lal~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------~~~GRv~si~ 348 (524)
T PF05977_consen 299 LLLALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------WVRGRVFSIY 348 (524)
T ss_pred HHHhcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHhHHHHHH
Confidence 8888766 677778888889999888888888999999998 5599999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 179 YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+...+.+..+|.++.|.+.++.|-+..+.+.++..+++.++.+
T Consensus 349 ~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888776665555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=113.73 Aligned_cols=173 Identities=9% Similarity=0.020 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchH-----H--HHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYR-----M--IGFGC 91 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~-----~--~~~~~ 91 (539)
.+.+.+..++.....+.+..+++.|+.+++|++..+++.+.+...++..++.+++|+++||+ |||+ . ..+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444445566677899999989999999999999999999999999999999997 8762 2 22222
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 92 FTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++..+...+..... +.....+..++.+++.+...+...+++.+..| +.|
T Consensus 333 ~l~~i~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~ 381 (476)
T PLN00028 333 TLGGVFCIWLGRAN-----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------RSL 381 (476)
T ss_pred HHHHHHHHHhcccc-----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------hhc
Confidence 22222222222111 33334444455555554444555555555443 237
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcC
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~ 224 (539)
+...++.+...++|+.++|.+.+ .....+|+.+|++.++..+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88889887777788887776544 22345699999998887777776665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4e-09 Score=106.76 Aligned_cols=162 Identities=11% Similarity=0.063 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhh--ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCRE--YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
|..++.++..++-..+-.++..+++.|+.+. +|+++.+++...+.+..+..++.+++++++||+ |+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 4455544444544445556778899999854 799999999999999999999999999999997 9999998888877
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
+++.++..... +.. ...+..+.|++.+...|...+...+.+|++. +++
T Consensus 219 ~~~~~l~~~~~-----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~--------~~a 266 (310)
T TIGR01272 219 VLLSIGAALTH-----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT--------SQG 266 (310)
T ss_pred HHHHHHHHHcC-----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhh
Confidence 77765544322 111 2345668899999999999999999888743 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHH
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVI 212 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~ 212 (539)
.++. ....+|++++|.+.|.+.+..|.+.+|++..+.
T Consensus 267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3443 567799999999999999999998888765543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-09 Score=100.19 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=138.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHH-
Q 009231 11 NPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGF- 89 (539)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~- 89 (539)
..+...+.+|.+.++.++--++.+=..+.-+.+.++.+|+|+..++.+.+.......+..++.|.++||+ |++...+.
T Consensus 258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~ 336 (459)
T KOG4686|consen 258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVAS 336 (459)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHH
Confidence 4455557788888877777777777778889999999999999999999999999999999999999998 99876544
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccch
Q 009231 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (539)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 169 (539)
+++...++...+.++. +.-+++..++|+.+.....+.++.++...|+ +
T Consensus 337 a~~~tl~~H~~l~Ft~-------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~ 384 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTF-------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------E 384 (459)
T ss_pred HHHHHHHHhhhHHhhh-------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------H
Confidence 4445666666666644 2345666778888888877888999999998 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhccccc---chhhhHHHHH-HHHHHHHHHH
Q 009231 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG---WKVGFGVPAV-IMLLSALSFF 221 (539)
Q Consensus 170 ~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g---~~~~f~i~~~-~~l~~~~~~~ 221 (539)
+.+++++..+...|+|.++.|++.|.+.++.| |--+|.+... ..+.+..+.+
T Consensus 385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999999998765 3334444333 3334443333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-09 Score=110.07 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+...+..++....++.+..+++ ++.+++|++..+.+.+.....++..++.+++|+++||+ |||+.+...+.......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 329 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 34444455667777777888888 66778999999999999999999999999999999997 99955544443333332
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.+..... +....++..++.|++.+...+...+++.|.+|+ +.|++++++.
T Consensus 330 ~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~ 379 (398)
T TIGR00895 330 LVGSTLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGWA 379 (398)
T ss_pred HHHHHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHHH
Confidence 2222112 445566777889999999999999999999998 5599999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 009231 179 YVFVSASSIVAVTCIVYI 196 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l 196 (539)
+...++|..+||.+.|++
T Consensus 380 ~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 380 IGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhHHhc
Confidence 999999999999998876
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=109.22 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH--HH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF--TC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~--~~ 94 (539)
|.++.+.+..++.....+++..+++.|+.+++|++..+++.+.....++..++.++.|+++||..+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555566667777778888999999999999999999999999999999999999999985234443222211 11
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++...... .+ ..+.....+..++.|+......+...++..|.+|+ +.|+++
T Consensus 296 ~~~~~~~~~---~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~ 347 (379)
T TIGR00881 296 IVSLLVYWL---NP------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------KAAGTA 347 (379)
T ss_pred HHHHHHHhc---Cc------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------chhHHH
Confidence 111111111 00 01333444455556655555556667788999988 448999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhh
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGF 206 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f 206 (539)
.++.+...++|..++|.+.|.+.++.||+..|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998765
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=107.45 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=106.4
Q ss_pred hhHHHHhhhhccCChhHHHHHHHHHH-HHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 009231 38 PNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (539)
Q Consensus 38 ~~l~~yl~~~lg~s~~~~~~i~~~~~-~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (539)
.+.+.|+.+++|+++++.+++..... ++..++.+++|++.||+ ||||.+..+.+...+..+........+.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~------- 301 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPK------- 301 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 44556778889999999999987655 45788899999999997 9999888777766655444332120111
Q ss_pred cccCCCCCCCccchHHHHHHHH----HHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 117 QLRNGCESATWSQLMPLYFAFG----LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
+.+.+++... ..+++.+...+....++.+.+|.+ .++.+....++|..+++.+
T Consensus 302 ------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 302 ------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT-----------QYALLSALASVGRVYVGPT 358 (402)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 3344444443 445556666677777777776652 2344444556777766668
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 193 IVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+|++.++.||+..|.+.+...+++.++.+.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877776665543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=107.90 Aligned_cols=154 Identities=10% Similarity=-0.018 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..+.......+....++++..++|.|++ +.|++..+.+.+.+...++..++.++.|+++||+-+||+.+.++.++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILI-SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 34454445556667778888899999987 47999999999999999999999999999999962456677777777777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+...+.+.. +.... ...++.|++.|...|...+.+.+..+++ ++++..++
T Consensus 276 ~~~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~ 325 (355)
T TIGR00896 276 GLCGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSA 325 (355)
T ss_pred HHHHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHH
Confidence 766665433 11111 2346789999998888877777655542 33788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG 201 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g 201 (539)
+.+...++|..++|.+.|++.++.|
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=113.99 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=126.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.+....+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4455555566777777777777778888888998877766655555667788899999999997 999999999988888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++..+.. ..+.+.+++..++.++|.+...+...++.+|..|+++...+++.++..++
T Consensus 307 ~~~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 307 GYLLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 877666422 11455666777889999999999999999999887542222244688899
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
.+.....+|..+|+.+.+.+.+..||
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998887655444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=108.74 Aligned_cols=177 Identities=11% Similarity=-0.033 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHH--------H
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMI--------G 88 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~--------~ 88 (539)
+.++...+..++....++....++|.|+.+.+|++..++++..+...++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4566777788888889999999999999999999999999999999999999999999999996 654321 1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccc
Q 009231 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (539)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (539)
.+......+..+..... .. .+....++...+.+.+.+...+.......|..|+
T Consensus 340 ~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 392 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR------- 392 (465)
T ss_pred HHHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------
Confidence 11111111111111111 00 0233333444444555555555555555555543
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhcccc---cchhhhHHHHHHHHHHHHHHHh
Q 009231 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNL---GWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 169 ~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~---g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
.++.+.++.+...++|+.++|.+.|++.+.. +|..+|.+.++..+++.+....
T Consensus 393 -~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 -FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3899999999999999999999999987653 4888999888777776665544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=105.83 Aligned_cols=167 Identities=10% Similarity=0.011 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.++..++..++...++++...++++++.+++|++..+.+.+.....++..++.++.|++.||. +|+..+..+.+....+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~ 295 (394)
T PRK10213 217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 344444444555556666666765555678899999999999999999999999999999995 5444444333323333
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+....+ +.+.+.+..++.|++.+...+..++++.+..|++ +++..+.
T Consensus 296 ~~l~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 344 (394)
T PRK10213 296 LVLTLWGS-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ--------AEKAGSI 344 (394)
T ss_pred HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc--------HHHHHHH
Confidence 33333222 4566677788899999999999998899888752 3455566
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLS 216 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~ 216 (539)
.....++|..+||.++|++.++.|++..+...+...++.
T Consensus 345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 667789999999999999999999988888876654433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=108.16 Aligned_cols=159 Identities=9% Similarity=0.013 Sum_probs=113.5
Q ss_pred hhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 009231 37 TPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACD 116 (539)
Q Consensus 37 ~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 116 (539)
..+.|.+ .+++|++....++......+...++.+++|+++||+ |||++++.+.++.+++.++++.....+.
T Consensus 291 ~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------- 361 (479)
T PRK10077 291 LYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------- 361 (479)
T ss_pred HHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc-------
Confidence 3344444 457899988888887778888899999999999997 9999999999998888877764330000
Q ss_pred cccCCCCCCCccchHHHHHHHHHHHhhccC-ccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh-
Q 009231 117 QLRNGCESATWSQLMPLYFAFGLMSLGSGG-IRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV- 194 (539)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~- 194 (539)
..........+.+.+.+. ..|...++++|.+|+ +.|+++.++.+...++|.++++.+.+
T Consensus 362 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~p~ 422 (479)
T PRK10077 362 ------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTFPM 422 (479)
T ss_pred ------------ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 111222233334444433 347778999999998 45999999999999988888865554
Q ss_pred -----hhcccccchhhhHHHHHHHHHHHHHHHhc
Q 009231 195 -----YIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 195 -----~l~~~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
++.++.+|++.|++.+...+++.+..+..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred HHhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 44467889889988877666665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-08 Score=97.53 Aligned_cols=84 Identities=10% Similarity=-0.078 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc---------
Q 009231 129 QLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------- 199 (539)
Q Consensus 129 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------- 199 (539)
++..+.++.++.|.|.+..+++.++++++.-|+++ +.+..++.+....+|..+||++++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~-------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET-------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch-------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 67789999999999999999999999999998844 78899999999999999999999987632
Q ss_pred -------ccchhhhHHHHHHHHHHHHH
Q 009231 200 -------LGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 200 -------~g~~~~f~i~~~~~l~~~~~ 219 (539)
.+|++++++.+.+.++..+.
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888988666554444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.8e-09 Score=108.84 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=129.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhh--hccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCR--EYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
|.++......++..+.+.......+.|+.. +.+.+....+.+.....+......++.|++.||+ ++|+.+..++++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 344555555566666655555666777653 4566677778888888777777788999999997 9999999998888
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++..+..... .+.+.+.+...+.++|.+...|...+++.+..|++. |+++
T Consensus 285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~-------~~~~ 335 (395)
T PRK10054 285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM-------KASY 335 (395)
T ss_pred HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc-------ceeh
Confidence 88876665432 145556677889999998888988899999998844 6777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
++... ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 77644 56699999999999999999988888776554444444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=108.58 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHh-hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYL-CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
.++...+..++.....++...+++.|+ ++.+|+|+.++++....+.++..++.+++|++.||+ ||||++..+..+..+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 334444455666666676777889896 567899999999999999999999999999999997 999999988777766
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+..+.. +. ..+.+..+.|+|.+...|...+...+.+|++. +.+.+
T Consensus 338 ~~~~~~~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~--------~~as~ 385 (438)
T PRK10133 338 LCLISAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT--------KYGSS 385 (438)
T ss_pred HHHHHHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--------ccchh
Confidence 655544322 11 23455678999999999999999999987633 23334
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHH
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~ 218 (539)
+.. ...+|+.++|.+.|.+.+..| -+..|++..+..+....
T Consensus 386 l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 333 234678888889999988887 78888876665444333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=110.44 Aligned_cols=167 Identities=18% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHH------------HHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATN------------IIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~ 92 (539)
..++..+.+|++..++|.+++ +.|++..+++. ......++..++.+++++++||+ |||++++++.+
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 344456788899889888885 67887653321 12223345556778899999997 99999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++..+.+.... +. .+...+....+...++..+..+....+.+|.+|+ +.|+
T Consensus 374 ~~~~~~~~l~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------~~R~ 427 (502)
T TIGR00887 374 ILTVLFFVLGFAYN-HL------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------RYRS 427 (502)
T ss_pred HHHHHHHHHHHHHH-hc------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------hHHH
Confidence 77777666654320 00 0111111111112222223445667778999999 5599
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc----------ccchhhhHHHHHHHHHHHHH
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDN----------LGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~----------~g~~~~f~i~~~~~l~~~~~ 219 (539)
++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988773 34456677777666655443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=105.37 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=129.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..|.+....++.--+|.+...++|.|+++.+ +............+...+..+++|+++||+ |+||++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 45677777777766677777779999988765 333333334455778889999999999997 999999999887777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCC----------C-
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDG----------T- 165 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~----------~- 165 (539)
......... |. .+..+.+.+.++.++..++.|.-..+...++.+.+|+++. .
T Consensus 329 ~~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 664433322 21 0112566666666667777777788888888888874110 0
Q ss_pred ---ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccc-cchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 166 ---KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNL-GWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 166 ---~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
+.+++-+...|+......+|+.+-|.+.|...+.. ++...|+...+..+++..+.+....
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00123567777877788888888887777776654 4778888877777666666555433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=106.84 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=137.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.....++..++..+++.......+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 55667777888888888888888888888888877 5677888889999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++..+.. ..+.+.+++..++.|++.+...+...++++|..+.++...++++.+..++
T Consensus 303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 988877654 12678888889999999999999999999999987654333355788899
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccch
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWK 203 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~ 203 (539)
.+.....+|..+++.+.+.+.+..||.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999988876554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=104.01 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.+..-++..++-+=+.-++......|-..++|++..+...+....++.+.+++++.|+|.||+ |.|+++.+++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 444445566666666667888899999999999999999999999999999999999999997 9999999999988877
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
.+...+.. ....+++.-++.|+..|..++.+-++.++..|+++ -++.++.
T Consensus 332 ~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k-------~~~fFgl 381 (438)
T COG2270 332 ALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK-------EGRFFGL 381 (438)
T ss_pred HHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc-------ccceeeh
Confidence 76666533 33446666778999999999999999999999966 4889999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~ 221 (539)
|......++.+||.+.+.+.+..| -|..+....++..+++++.+
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 999999999999999999887654 66776665555555555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=106.51 Aligned_cols=154 Identities=13% Similarity=0.035 Sum_probs=112.8
Q ss_pred cchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 009231 35 GFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPA 114 (539)
Q Consensus 35 ~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 114 (539)
....++|.|+++..+ ++.+.+++.+...+.........+++.||.++.++.+..++++..++..+++.+.
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345678888876555 7788888887777766655555566665544777778888888887777666544
Q ss_pred cccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 115 CDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
+.+.+.+...+.++|.+...|...+++.+..|+++ |+++++.++...++|..+||.++|
T Consensus 296 --------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~-------~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 --------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA-------RGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc-------chhhhhHHHHHHHHHHHhcccchH
Confidence 45556666677888888888999999999999844 899999999999999999999999
Q ss_pred hhcccc---c-chhhhHHHHHHHHHHHHH
Q 009231 195 YIQDNL---G-WKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 195 ~l~~~~---g-~~~~f~i~~~~~l~~~~~ 219 (539)
++.++. + ....|++.+...++..+.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 355 WLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 998764 2 345555555544444443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=103.58 Aligned_cols=205 Identities=17% Similarity=0.278 Sum_probs=152.6
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+.+...+....+....+.+......+-+++.++++.++.|++.+.+-++..+...+..|.+-|. =|-|.+-+|++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 5555555556666666668888899999999999999999999999999999999999999996 888899999999999
Q ss_pred HHHHHHHhhccCCCCCCC-------------------cccc-------cCCCC--CCCccchH-HHHHHHHHHHhhccCc
Q 009231 97 GMVLLWSTTILPGAKPPA-------------------CDQL-------RNGCE--SATWSQLM-PLYFAFGLMSLGSGGI 147 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~-------------------~~~~-------~~~~~--~~~~~~~~-~~~~~~~l~g~g~g~~ 147 (539)
|.+++++-.++..-+.++ |++. +..+. ..++...+ +++.+.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 999998432221111000 1111 11111 12222233 5778899999999999
Q ss_pred cccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc------------------c-cchhhhHH
Q 009231 148 RSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN------------------L-GWKVGFGV 208 (539)
Q Consensus 148 ~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~------------------~-g~~~~f~i 208 (539)
+|-..+++=|-..+++ -...+++.+....+|.++|.+++++..+. . -|+..|++
T Consensus 255 ~tlGisYiDDnvk~~~-------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN-------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred ccCCCccccccccccC-------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 9999999888777644 68899999999999999999998875421 1 28889999
Q ss_pred HHHHHHHHHHHHHhcCCceee
Q 009231 209 PAVIMLLSALSFFLASPFYVK 229 (539)
Q Consensus 209 ~~~~~l~~~~~~~~~~~~~~~ 229 (539)
.+.+.++..+-++.+.+..++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHhCcccCcc
Confidence 988888777777666555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.6e-08 Score=103.31 Aligned_cols=159 Identities=11% Similarity=-0.032 Sum_probs=120.0
Q ss_pred HHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCC
Q 009231 30 RMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPG 109 (539)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~ 109 (539)
..........++.|+++.+|.++.+.|.+.....++..++.++.+++.||+ ++|+++..++.. .+...+.++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~---- 291 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh----
Confidence 344455556777889899999999999999999999999999999999997 999988887543 33333333322
Q ss_pred CCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 009231 110 AKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVA 189 (539)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g 189 (539)
+.+...+..++.|++.+...+..++.+.+..|++. .++++.++.+...++|..++
T Consensus 292 -------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~------~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 292 -------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV------GAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc------cchhHHHHHhHHHHHHHHHH
Confidence 45555666778899999888888888877544321 26999999999999999999
Q ss_pred HHHhhhhcccccchhhhHHHHHHHHHHHHHH
Q 009231 190 VTCIVYIQDNLGWKVGFGVPAVIMLLSALSF 220 (539)
Q Consensus 190 ~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~ 220 (539)
..+.+.+ +.+|-+..+.+.+...++.+.+.
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 9888866 56787777777665555444443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=119.73 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChh-HHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETT-AATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
++..++..++.....+....+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 33333444444555566778899999999999999 999999999999999999999999997 9999998888887777
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
.+++.+.. +.+.+++..++.|++.++..+...+++.+..|++ .|++++++
T Consensus 313 ~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-------~rg~~~~~ 362 (1146)
T PRK08633 313 LFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK-------ELGKVLAA 362 (1146)
T ss_pred HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc-------chhhhhHH
Confidence 77666544 5566777788899999998899999999999884 48999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcc-cccchhhhHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVI 212 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~-~~g~~~~f~i~~~~ 212 (539)
.+...++|.++++.+++.+.. ..++...|++.+.+
T Consensus 363 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 363 NNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999888877766643 23455556554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-08 Score=100.80 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+.......+....++....+.|.|+++++|+++.+++.+.....++..++.++.|+++||+ |||+.+..++.+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33333444455556677777889999999999999999999999999999999999999997 99999999888887777
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.++......+. .....+.....+.|+|.+...+...+...|..|+ + |+++.++.
T Consensus 287 ~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------~g~~~~~~ 340 (385)
T TIGR00710 287 VLLEITAILGL------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V-------AGTASALF 340 (385)
T ss_pred HHHHHHHHhcc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c-------chHHHHHH
Confidence 66665331110 1233445556778888888888888888887753 2 68888887
Q ss_pred HHHHH-HHHHHHHHHhhhhcccccchhhhH
Q 009231 179 YVFVS-ASSIVAVTCIVYIQDNLGWKVGFG 207 (539)
Q Consensus 179 ~~~~~-lg~~~g~~i~~~l~~~~g~~~~f~ 207 (539)
+.... +|+..+|. .+.+.+..+|...+.
T Consensus 341 ~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 341 GTLRLVLGAIVGYL-VSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHHHHHH-HHhccccChHHHHHH
Confidence 77765 45555554 555555445544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=119.30 Aligned_cols=182 Identities=8% Similarity=-0.048 Sum_probs=132.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++..++..++..+.++++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 3455555566666777778888999999999999999999999999999999999999999986 777766666655555
Q ss_pred HHHHHHHhhc--cC-CCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 97 GMVLLWSTTI--LP-GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 97 ~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+.+.+.+... .+ ..... .........+.+.++++.++.|++.+...+...+++.+..|++. |++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-------~G~ 370 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLK------SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH-------RAR 370 (1140)
T ss_pred HHHHHHhccccccccccccc------chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc-------cee
Confidence 5444443200 00 00000 00000000245667778888999999999999999999999954 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc-cccchhhhHHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVI 212 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~-~~g~~~~f~i~~~~ 212 (539)
+++..+...++|..+++++.+.+.+ ..++...|.+.+..
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999888863 45666666655543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-10 Score=122.63 Aligned_cols=203 Identities=14% Similarity=0.237 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (539)
.+.++...+.+...++......+-+++.++++.+++|++.+.+-++..+..++..+..+|. -|-|-+-+|.+++++|++
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHH
Confidence 3333333344477788888888899999999999999999999999999999999999996 777889999999999999
Q ss_pred HHHHhhccCCCCCCC------cccc--cCCC-------------------CCCCccchHHHHHHHHHHHhhccCccccch
Q 009231 100 LLWSTTILPGAKPPA------CDQL--RNGC-------------------ESATWSQLMPLYFAFGLMSLGSGGIRSSSL 152 (539)
Q Consensus 100 l~~~~~~~~~~~~~~------~~~~--~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 152 (539)
++++=+++...+.++ |++. .+-| ....+.....++++.++.|+|.....+...
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 998433222211100 0000 0011 001111345688899999999999999999
Q ss_pred hhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc---------------------c-cchhhhHHHH
Q 009231 153 AFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN---------------------L-GWKVGFGVPA 210 (539)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~---------------------~-g~~~~f~i~~ 210 (539)
+|+=|-.++++ -+...++.+....+|.++|.++++...+. . .|+..|.+.+
T Consensus 164 tYiDDnv~~~~-------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g 236 (539)
T PF03137_consen 164 TYIDDNVSKKN-------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICG 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecccccccc-------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999998855 58889999999999999999988865421 1 2888888888
Q ss_pred HHHHHHHHHHHhcCCceeec
Q 009231 211 VIMLLSALSFFLASPFYVKS 230 (539)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~ 230 (539)
...++..+-++.+.++.++.
T Consensus 237 ~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 237 ILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHcCCccCCCc
Confidence 87776666666555555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=102.34 Aligned_cols=144 Identities=9% Similarity=0.028 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHH-HHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWT-AATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~-~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.+..++..++..++++....+++.|+++ +|+++++.+.+..... +...++.+++|+++||+ ||||.+..++++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5555556677788899999999999986 9999999999888766 56778999999999997 9999999888887776
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
..+..+..+... + ...+..+.+.+....++.+++.+...+...+++.+..|+++ |++.+++
T Consensus 289 ~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-------~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGH----------H--DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF-------GATQMAL 349 (356)
T ss_pred HHHHHHHHhcCc----------c--cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc-------cHHHHHH
Confidence 665543210000 0 00000144566677788899999999999999999999944 8999999
Q ss_pred HHHHHH
Q 009231 178 YYVFVS 183 (539)
Q Consensus 178 ~~~~~~ 183 (539)
++...+
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 877654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-08 Score=99.33 Aligned_cols=167 Identities=13% Similarity=-0.015 Sum_probs=113.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccch---HHHHH-HHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRY---RMIGF-GCF 92 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk---~~~~~-~~~ 92 (539)
|.++.+....++....+|++..++|.|++ +.|++.. .+.......+... +..++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 55677777889999999999999999996 4688865 5555444444444 4457888885 543 33232 333
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.++...+.+.+. +....++...+.+++.....+...++.+|.+|+ +.|+
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------ELHG 315 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------hhcC
Confidence 3333333333222 222334444556666666667788999999999 4499
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
++.++.+...++|+..+|.+.+.+.. +....|.+.+...+++.+..+
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887763 666777777666665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=94.01 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..|.+.+..-+.++.+|.+..++|.++. +.|+|..++|++.+..++......+.+-++++|.-.+|+.....+..+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34667666666789999999999999986 78999999999999999999999999999999876888888888888888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
|...+.+.. . +...+. .+++|+|.|+.+|...+++.+..++.+ +-++..+
T Consensus 287 G~~G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~------~Aa~LSg 336 (395)
T COG2807 287 GLVGLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA------IAAALSG 336 (395)
T ss_pred HHHHHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH------HHHHHHH
Confidence 887776544 1 222233 588999999999999999999887754 3677778
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHH
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~ 218 (539)
+-+...++=+++||.+.|++.|..| |...+...+...++..+
T Consensus 337 maQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 337 MAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 8888888889999999999998774 87777665554444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=106.58 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=149.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhcc--chHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVG--RYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~G--rk~~~~~~~~~~ 94 (539)
+.++.......+..++++.-..+++.|.. .+|++..++..+.++..+...++.++.|+++|+. . ++.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 67788888889999999999999999977 9999999999999999999999999999999997 6 334555566666
Q ss_pred HHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHH
Q 009231 95 LLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSY 174 (539)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~ 174 (539)
.++...+.++. +++.++..-++.|++.|.+.......+.|..+.++ .+.+
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~-------l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK-------LSNA 425 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh-------cchH
Confidence 66665666555 67778888889999999988888888999999844 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcC
Q 009231 175 FSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 175 ~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~ 224 (539)
+++......++..+||.+.|++.+..+ |...|+.++...+++....++..
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999998887 99999999988887776655544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-08 Score=103.08 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+.++...++...+...... +..|..++.--++...+.+.....+...++.+++++++||+ |+|+.+..+.+...++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444444444433333 33444433222334444555566677778889999999997 99999998877665544
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
....+.. ..+.+.+++..++.+++.+...+...++++|..+.++...+++..+..++.+
T Consensus 309 ~~~~~~~---------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~ 367 (444)
T PRK09669 309 ALIFFIP---------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN 367 (444)
T ss_pred HHHHHhC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH
Confidence 3332211 1256667777888999999999999999999998544322224457788899
Q ss_pred HHHHHHHHHHHHHHhhhhcccccc
Q 009231 179 YVFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 179 ~~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
.+...+|.++|+.++|++.+..||
T Consensus 368 ~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 368 LFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999988776666
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-08 Score=104.93 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=101.9
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCC
Q 009231 46 REYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESA 125 (539)
Q Consensus 46 ~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (539)
+.++.+..... ....+....+.++.++++||+ |||+++.++.++.+++.++..+.. .
T Consensus 351 ~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~---------------- 407 (505)
T TIGR00898 351 GNLGGNIYLDL---FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V---------------- 407 (505)
T ss_pred cccCCChHHHH---HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C----------------
Confidence 34555543332 334566677888999999997 999999999988888877666533 1
Q ss_pred CccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhh
Q 009231 126 TWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVG 205 (539)
Q Consensus 126 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~ 205 (539)
...+...+..++.+++.+...+...++.+|.+|+ +.|+++.++.+....+|++++|.+.+ + ...++..+
T Consensus 408 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~ 476 (505)
T TIGR00898 408 --DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLP 476 (505)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhH
Confidence 0123334444555666666678888999999998 55999999999999999999999888 4 34566777
Q ss_pred hHHHHHHHHHHHHHHH
Q 009231 206 FGVPAVIMLLSALSFF 221 (539)
Q Consensus 206 f~i~~~~~l~~~~~~~ 221 (539)
+.+.+...+++.+..+
T Consensus 477 ~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 477 LVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666555444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-08 Score=103.58 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=120.7
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.+...++..++..++.+....+.+.|.+..++ +....+.+.....++..++.++.++++||+ |+|+++.+++++..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666667777777777666666644443334 566667777777788889999999999997 999999988887776
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.+........+ ..+.+.+++..++.+++.+...+...++++|..|.++-..++++.+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665554321011 11455666677788899999999999999999876532222244677888
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
+..+...+|..+|+.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988765555
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=95.65 Aligned_cols=143 Identities=8% Similarity=-0.008 Sum_probs=92.6
Q ss_pred hhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009231 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (539)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (539)
.+....+.+.|+++++|++..+.+.+.....++..++.++.|++.||+ |||+++.+++.+..++..+..+..
T Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~------- 290 (392)
T PRK10473 219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP------- 290 (392)
T ss_pred HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 334445567788889999999999999999999999999999999997 999999999988888877776544
Q ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
+....+....+.+.|.+...+.. ...+..|.+++ -+.+.+ ...++..+|+.+
T Consensus 291 ----------------~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~------~g~~~~----~~~~~~~~g~~~ 342 (392)
T PRK10473 291 ----------------SHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLR------AGVASS----TLGIAQVCGSSL 342 (392)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCccc------ccHHHH----HHHHHHHHHHHH
Confidence 22223333333333333333322 22333344221 233333 345666666767
Q ss_pred hhhhcccccchhhhHHHHH
Q 009231 193 IVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 193 ~~~l~~~~g~~~~f~i~~~ 211 (539)
++++.++.|+.....+.+.
T Consensus 343 ~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 343 WIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHhccchhHHHHHH
Confidence 7777766676554444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=98.01 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhccCC-hhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 22 IIANEAFERMATVGFTPNMILYLCREYNME-TTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
.+...+...+.++....+++.|+.+++|++ ..+.+.+.....+...++.++.|+++||+ |+|+..........++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 444556666678888999999999999999 89999999999999999999999999997 9988888887777766666
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
+..... ..+....+...++.|++.+...+...+++.|..|+ +.|+++.++.+.
T Consensus 290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~ 342 (352)
T PF07690_consen 290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------EYRGTAFGLFNS 342 (352)
T ss_dssp HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------CHHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 654331 01345566677789999999999999999999998 449999999999
Q ss_pred HHHHHHHHHH
Q 009231 181 FVSASSIVAV 190 (539)
Q Consensus 181 ~~~lg~~~g~ 190 (539)
..++|..+||
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.7e-07 Score=93.25 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=108.8
Q ss_pred HHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q 009231 27 AFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTI 106 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~ 106 (539)
.+....++....++|.|++ ++|++..+.++......++..++..+++++.||+ |+|+.+....+..+++...+.....
T Consensus 213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (401)
T PRK11043 213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL 290 (401)
T ss_pred HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677888875 5899999999988888888889999999999997 9999876666655555443332221
Q ss_pred cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 009231 107 LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASS 186 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 186 (539)
.+. .+....+++..+.+++.+...|...+...+..|+ + ++++.++++.....++
T Consensus 291 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~~~g~~~~~~~~~~ 344 (401)
T PRK11043 291 LSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A-------TGKAAALQNTLQLGLC 344 (401)
T ss_pred hcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c-------ChHHHHHHHHHHHHHH
Confidence 110 1344455566778888888888888887777653 2 7899999988888888
Q ss_pred HHHHHHhhhhcccccchhhh
Q 009231 187 IVAVTCIVYIQDNLGWKVGF 206 (539)
Q Consensus 187 ~~g~~i~~~l~~~~g~~~~f 206 (539)
..++.+.|.+.+.......+
T Consensus 345 ~~~~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 345 FLASLLVSALISTPLLTTGS 364 (401)
T ss_pred HHHHHHHHHccCCChhHHHH
Confidence 88888888887754444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-07 Score=92.42 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (539)
+..++..++...+.+....+.+.|+.+++|+++.+.+.+.....++..++.+++|+++||+ ||||++..+..+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3333444444555666666777888888999999999999999999999999999999997 999999988876544433
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
........+ .+.+...++..+.+.+.+...+.....+.|..|+ + ++++.+...
T Consensus 276 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~g~~~~~~~ 328 (377)
T PRK11102 276 WLVVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-M-------AGTASSLAG 328 (377)
T ss_pred HHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-c-------chHHHHHHH
Confidence 322221001 1333344444444555555555666666776552 2 677777655
Q ss_pred HHH-HHHHHHHHHHhh
Q 009231 180 VFV-SASSIVAVTCIV 194 (539)
Q Consensus 180 ~~~-~lg~~~g~~i~~ 194 (539)
... .+|..+++.+++
T Consensus 329 ~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 329 TLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 543 477777776544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=88.35 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=109.6
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCC
Q 009231 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (539)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (539)
.+++|++..|++.+.........+..++.|.++||+ ||||.-+..++++.+..+.-- ++
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~~------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-SS------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-cc-------------------
Confidence 368999999999999999999999999999999997 999999999888887765332 22
Q ss_pred CCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH-HHHHHHHHHHHHHhhhhcccccc-
Q 009231 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGW- 202 (539)
Q Consensus 125 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~~g~~i~~~l~~~~g~- 202 (539)
++..++++|++-|+++....++--+.......+.+-+ ++-++.-++... ..+.+-++.+..++-++.+..+.
T Consensus 120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~--~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP--QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 7888999999999999998887766554433222111 133455454433 22334444444455566665554
Q ss_pred -hhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 203 -KVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 203 -~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
..+|....++.+++.++.....++
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccc
Confidence 778988888777666665544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.1e-07 Score=92.62 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=134.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.+...++..++...+.-....+...|+++.-|.+....+.+.+...++=.....+.+++..|+ |.|++++++++.+++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3454555566677777777778999998755448888888887777777778888999999997 999999999999888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
=..+.+..++ |. +.......++..+.|+..|.+..+...++.+..|++ .|.++.+
T Consensus 286 R~~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~-------~~at~Q~ 340 (400)
T PF03825_consen 286 RWLLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE-------LRATAQG 340 (400)
T ss_pred HHHHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc-------chHHHHH
Confidence 7777776530 00 001112233456799999999999999999999994 4899999
Q ss_pred HHHHHH-HHHHHHHHHHhhhhcccccch------hhhHHHHHHHHHHHHHHHhc
Q 009231 177 WYYVFV-SASSIVAVTCIVYIQDNLGWK------VGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 177 ~~~~~~-~lg~~~g~~i~~~l~~~~g~~------~~f~i~~~~~l~~~~~~~~~ 223 (539)
++.... .+|.++|..++|++.+++|-+ ..|.+.++..++..++++..
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 988765 699999999999999887644 34455555555555444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.8e-07 Score=93.83 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=119.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccc-------hHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGR-------YRMIGF 89 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Gr-------k~~~~~ 89 (539)
+.+|.+....+++..+++.+..++|.|+.+.+|++..+.|++.+.-.+...+..+++|+++||. -+ +|-+.-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999997 33 222222
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccch
Q 009231 90 GCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKG 169 (539)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 169 (539)
+......+..+..++- ++. +| .+.....+.++..+.|+..+++ ..-..|..|.
T Consensus 337 ~i~~~~~ai~l~~l~~-~~~------~~--------~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~apq-------- 389 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAF-TSD------EH--------RLLAVILLTIAIGLSGFNISGF----YKNHQDIAPQ-------- 389 (466)
T ss_pred hHHHHHHHHHHHeeee-cCC------Cc--------chHHHHHHHHHHHHcccchhhh----Hhhhhhccch--------
Confidence 2222222222222211 111 10 0001111122222222222222 2212222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhccc---ccchhhhHHHHHHHHHHHHHHHhc
Q 009231 170 ALQSYFSWYYVFVSASSIVAVTCIVYIQDN---LGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 170 ~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
--+..+++.+...++++.++|.+.+.+.+. ..|+.+|++.+++.++..+.+.+.
T Consensus 390 ~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 390 HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 258889999999999999999999999842 379999999999888888766544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-05 Score=81.96 Aligned_cols=122 Identities=14% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 009231 351 LPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 430 (539)
Q Consensus 351 ~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~ 430 (539)
+++..|+.+| .++...+..|+....+-++..++.+ ++|..+|.-++.|+-.+..+
T Consensus 423 ~ffs~klI~k---iGHv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 423 YFFSFKLIEK---IGHVNVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALIW 477 (618)
T ss_pred HHHHHHHHHH---hcccceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHHH
Confidence 3344455555 7777889999999999999999987 88999999999999999999
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 009231 431 IGQTEFYYTELPKSMSSIASTLSGAG-LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509 (539)
Q Consensus 431 ~~~~~~~~~~~P~~~rg~~~gi~~~~-~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 509 (539)
.+.-+++...+|+++|.+++|+.... -++|-.+|+.+.+.+....+ ....|...++.+++.++
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997764 55777777777666554332 13446666555555544
Q ss_pred HHHH
Q 009231 510 YYLA 513 (539)
Q Consensus 510 ~~~~ 513 (539)
.+..
T Consensus 542 ~~~~ 545 (618)
T KOG3762|consen 542 LFIS 545 (618)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-06 Score=72.90 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=86.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
.++++.+..+..+.+++.+.....+ +.+.+....++.+++.+...+....++.+..|+
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 5566677778777777776665543 456666677889999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLAC 514 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~ 514 (539)
+.|++++++.+....+|..+++.+.+.+.+.. ++...|+..+.+.++..+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988765322 13455666666666665555443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-06 Score=85.42 Aligned_cols=170 Identities=9% Similarity=0.059 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhc-------------------cCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREY-------------------NMETTAATNIIFIWTAATNFLPIVGALLADSY 80 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-------------------g~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~ 80 (539)
+..-..-|.++++||+++-......+... ..+...---=..+.+++-.-+.++.+++.||+
T Consensus 329 lllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl 408 (528)
T KOG0253|consen 329 LLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL 408 (528)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh
Confidence 33344677899999998765444333211 01111111112334667778889999999996
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCC
Q 009231 81 VGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLD 160 (539)
Q Consensus 81 ~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~ 160 (539)
|||+++..+++++.+..+++..+. ..+ .....++.+|+.+. +...+++.|-.|.+|
T Consensus 409 -GRKkTMal~l~~f~iflfll~~c~------------------~rn-~~tvllf~arafis----g~fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 409 -GRKKTMALSLILFGIFLFLLTTCK------------------TRN-AYTVLLFTARAFIS----GAFQVAYVYTPEVYP 464 (528)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHhc------------------Ccc-hhHHHHHHHHHHHh----chheEEEEecCcccc
Confidence 999999999999998888777544 111 01223556676654 345677899999999
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHh
Q 009231 161 KGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 161 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
. ..|+.+.|......-+|+++.|.+. +....+-..+..+.+..++++.+...+
T Consensus 465 T-------avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 465 T-------AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred h-------hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHhee
Confidence 9 5699999999999999999999887 322334445555666666666655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.9e-07 Score=91.58 Aligned_cols=139 Identities=10% Similarity=0.070 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
.+......++....++++..+++.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+......+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 44444455555566778888999999999999999999999999999999999999999997 99998888877766666
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWY 178 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~ 178 (539)
.++.+... + ..+...+.+...+.+++.|...+...+++++..|+ + +++..++.
T Consensus 306 ~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-------~g~~~g~~ 358 (366)
T TIGR00886 306 FLVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A-------TGAVSGLV 358 (366)
T ss_pred HHHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h-------cccHHHHH
Confidence 55554220 0 00344444555556666676667777888887763 2 68888887
Q ss_pred HHHHHHH
Q 009231 179 YVFVSAS 185 (539)
Q Consensus 179 ~~~~~lg 185 (539)
+...++|
T Consensus 359 ~~~~~~g 365 (366)
T TIGR00886 359 GAIGNLG 365 (366)
T ss_pred HHhccCC
Confidence 7776665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=90.12 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=132.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.....+.+.++...++.-..+.+.-|.+-.+|.++............+..++.++...+++|+ |+|+++..+.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4455555577777777777777788888888999999998898888888888899999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+.++..+.. ..+....++..++.++|.+...+..+++++|..+.++-..++++-+..++
T Consensus 315 ~~~~~~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s 373 (467)
T COG2211 315 GYLLLYFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS 373 (467)
T ss_pred HHHHHHhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence 999888755 12677888888999999999999999999999877653222344566777
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG 201 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g 201 (539)
.+.+..-+|.+++..+.|++....|
T Consensus 374 ~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 374 GMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888999998888887765444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-05 Score=79.38 Aligned_cols=328 Identities=13% Similarity=0.040 Sum_probs=174.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHH
Q 009231 59 IFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG 138 (539)
Q Consensus 59 ~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (539)
..+-.....++.++++.+.|+. |.|..+.++...+..-.+.... .|.+.+++.-+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~------------------------~N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF------------------------PNSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh------------------------cchHHHHHHHH
Confidence 6667778888999999999996 9999999998876654433332 16778899999
Q ss_pred HHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc--------ccch-h-----
Q 009231 139 LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGWK-V----- 204 (539)
Q Consensus 139 l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------~g~~-~----- 204 (539)
+.|+|.+..+..--.++++..++++ +++-.++.....+.+.++|..+.-.+... .+.+ .
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~t-------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRET-------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVL 183 (461)
T ss_pred HhhhhHHheecccceehhhcCChhh-------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchh
Confidence 9999999999988899998887743 66666666666666666665433222111 1111 0
Q ss_pred --hhHH---HHHH---HHHHHHHHHhcCCceeecCCCCC--ChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccC
Q 009231 205 --GFGV---PAVI---MLLSALSFFLASPFYVKSKANTS--LLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLM 274 (539)
Q Consensus 205 --~f~i---~~~~---~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (539)
.|.+ .++. .+++.+.......+.....++.+ ...+..+......++++.... .
T Consensus 184 ~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L-----------------~ 246 (461)
T KOG3098|consen 184 FIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLL-----------------F 246 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHH-----------------H
Confidence 1111 1111 11111111111111111111111 222222222222221111000 0
Q ss_pred CCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHh
Q 009231 275 PSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLA 354 (539)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~ 354 (539)
+.-....+.+.+.. ..+- ......+..+ .+...+..++.+.+.+..-+.+.....+-
T Consensus 247 ~~f~~tG~~~Sf~~--------------~iyp-----t~i~ft~~~~----~n~~~~~ai~~~~~g~g~v~~g~~~~~l~ 303 (461)
T KOG3098|consen 247 PFFFYTGLETSFWI--------------SIYP-----TCISFTRKLG----SNTTYLIAIYSIGIGLGEVIGGLDFSILS 303 (461)
T ss_pred HHHHHHHHHHHHHH--------------hccc-----hhhhhhhhcc----CcchhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 00000000000000 0000 0000010110 22333445555544444444444444444
Q ss_pred hhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCcccc--ccchHHHHHHHHHHHHHHHHHHhh
Q 009231 355 SKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEG-ISDDLRAV--VQMSAMWQLPYLVLSGLAMAFNMI 431 (539)
Q Consensus 355 ~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~~~~~~~l~~~~~l~g~g~~~~~~ 431 (539)
+| .|+ ++....+.++..+-.+++++..... +++. +-.+++.. ...+.....+..++.|+++..++.
T Consensus 304 ~r-ir~---fg~~~~~~~~~~~~~~~~~li~l~~-------p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t 372 (461)
T KOG3098|consen 304 KR-IRG---FGRKPTVLIGIIIHLIGFLLIHLSF-------PNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNT 372 (461)
T ss_pred hh-hhh---cccCcchhHHHHHHHHHHHHHhccc-------cccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHH
Confidence 44 344 7888888888888877766654432 2222 11111111 122244455667899999999999
Q ss_pred hhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 432 GQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNA 470 (539)
Q Consensus 432 ~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~ 470 (539)
..+..+.... ++.|..+.+++-+-+.+++.++....+.
T Consensus 373 ~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 373 QRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999 4568899999999888888877666554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=89.69 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhh-ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCRE-YNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
..+..++..++-.....++..+++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++||++.++.....+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344444445555455556678899998653 255556666667777788899999999999997 999998888888777
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
..++..... +. .......+.+++.+.++|...+...+..+++. ...+..
T Consensus 312 ~~ll~~~~~-----------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~ 360 (410)
T TIGR00885 312 LCLGSIFAG-----------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAG 360 (410)
T ss_pred HHHHHHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHH
Confidence 766666533 21 23455677888888889999999999998733 222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc------cchhhhHHHHHHH
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNL------GWKVGFGVPAVIM 213 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~------g~~~~f~i~~~~~ 213 (539)
+. . .-+|+++.|.+.|++.|.. +.+..|+++.+..
T Consensus 361 l~-~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 361 LV-M-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HH-H-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence 22 2 3399999999999999854 5778888765543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-06 Score=84.74 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=99.7
Q ss_pred hhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009231 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (539)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (539)
........+.|+++.+|+++.+.+++.....++..++.++.+++.||+ |++... +.....++.+.........
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~---- 295 (394)
T PRK11652 223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG---- 295 (394)
T ss_pred HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc----
Confidence 333345567788888999999999998888888888899999999997 743332 2222222222221111000
Q ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
..+.+.+..+..+.++|.+...|...+...|..|+ + ++...++.+...++|..+++.+
T Consensus 296 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~-------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 296 --------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L-------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred --------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-------chHHHHHHHHHHHHHHHHHHHH
Confidence 01445667778889999999999999999888864 2 5788888888889999999999
Q ss_pred hhhhcccccch
Q 009231 193 IVYIQDNLGWK 203 (539)
Q Consensus 193 ~~~l~~~~g~~ 203 (539)
.+.+.....+.
T Consensus 354 ~~~~~~~~~~~ 364 (394)
T PRK11652 354 SAMLPQTGQFS 364 (394)
T ss_pred HHHccCCchHH
Confidence 98887654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=90.59 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhH----HHHHHHHHHHHHHhhHHHHHH----HHHhhccchHH--HH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTA----ATNIIFIWTAATNFLPIVGAL----LADSYVGRYRM--IG 88 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~i~~~~~~~~~i~~~~~G~----laDr~~Grk~~--~~ 88 (539)
+..+++..++....+....+.++.|.++..+.+... .+++.+...+...+.+++..+ +.||..+.+.. +.
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 344444555666777777777888887765554322 667777777777777766554 44441122333 37
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccc
Q 009231 89 FGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (539)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (539)
+|+++.+++....++...... .....+.+.++...++.++|+....|...+++.+..|+
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~------- 412 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ------- 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 788888888777765321100 00123778889999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 169 ~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
+.|+++++++.....+|..+++.+.....+..+|...|...+...++..++.++..|
T Consensus 413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 559999999999999999999988887777678888887777766665555554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-06 Score=86.43 Aligned_cols=185 Identities=12% Similarity=0.036 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 009231 19 LPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGM 98 (539)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 98 (539)
....+...+..+++-.-...+-...+-++-|++..++.+++........+..+++.++.||+ |||+.+++++..+.+..
T Consensus 271 ~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHH
Confidence 44444455555554333333344444567799999999999999999999999999999997 99999999999988888
Q ss_pred HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccC-ccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 99 VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGG-IRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
+++.....+.... ..+ -.+..+++.++..++.+. ..|...-+.+|.+|++. |..++++
T Consensus 350 ~~~~~~~~l~~~~-------------~~~-~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~-------R~aa~s~ 408 (485)
T KOG0569|consen 350 LLMSIALFLSNSF-------------GSW-LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA-------RSAAQSV 408 (485)
T ss_pred HHHHHHHHHHHHh-------------hhH-HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc-------hHHHHHH
Confidence 7777654222100 000 001223444443333332 36788899999999955 8999998
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
.+.+..+...+-...-..+.+..|- ..|.+..+...+..+..+...|+
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 8887777776666566666666664 55666655555555555554444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-07 Score=97.02 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=106.1
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 009231 350 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 429 (539)
Q Consensus 350 ~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~ 429 (539)
.+|+..-+.+| +++++++.+|..+..++.+..++.. ..|.+.+.-.+.|+||...
T Consensus 84 ~sPl~gyLadr---yNR~~v~~vG~~iW~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 84 ASPLFGYLADR---YNRKRVIAVGIFIWTLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHHHHHHHHhh---cCcceEEeeHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhh
Confidence 45555555555 7888899999999999999998886 6888888888999999999
Q ss_pred hhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 009231 430 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFL 509 (539)
Q Consensus 430 ~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~ 509 (539)
.|..+.++.+..|.++|+++++++++...+|+.+|-.....+.+.++ +..+.|+..+++.++..+
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---------------~Wr~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---------------WWRWAFRGSAVLGVIVGL 203 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---------------ceEEEEEeehHHHHHHHH
Confidence 99999999999999999999999999999999988777655544331 235678888888888887
Q ss_pred HHHHHhhhcc
Q 009231 510 YYLACCKAYG 519 (539)
Q Consensus 510 ~~~~~~~~~~ 519 (539)
+...+.++.+
T Consensus 204 L~~~f~~eP~ 213 (493)
T KOG1330|consen 204 LVFLFVREPE 213 (493)
T ss_pred HHHhhccCcc
Confidence 7776665543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-06 Score=88.72 Aligned_cols=160 Identities=8% Similarity=0.024 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 009231 20 PFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMV 99 (539)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 99 (539)
..++...++..++..........|.+-.+|. +...+.+...+.++..++.+++++++||+ |+|+++..+.....+...
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3333344444444443334444333333443 34455677778888889999999999997 999987765554444333
Q ss_pred HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH
Q 009231 100 LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY 179 (539)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~ 179 (539)
+..+.. . .+...+++..++.+++.+...+...++++|..+.++-..++++-+..++...
T Consensus 309 ~~~~~~---~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~ 367 (460)
T PRK11462 309 AMFFVP---M------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTL 367 (460)
T ss_pred HHHHhc---h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHH
Confidence 332211 1 1223344445567777777777778899998775431111122345567777
Q ss_pred HHHHHHHHHHHHHhhhhcccccc
Q 009231 180 VFVSASSIVAVTCIVYIQDNLGW 202 (539)
Q Consensus 180 ~~~~lg~~~g~~i~~~l~~~~g~ 202 (539)
+...+|.++|+.++|++.+..||
T Consensus 368 f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 368 FVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999988887654444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.4e-06 Score=85.97 Aligned_cols=178 Identities=10% Similarity=0.052 Sum_probs=136.2
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhc---cCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 93 (539)
|.+|...+........|+..-...+.|.+..+ +.++...|.+.+...+.-.+...+..++-+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 55665555444444455555556777776543 34556788888888888888999999999997 999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
.++=..++++++ +++.+.+...+.++-.+..-.+..-++++.+|+ +..++
T Consensus 299 ~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSAT 348 (412)
T ss_dssp HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHHH
T ss_pred HHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHHH
Confidence 888888888766 788899999999999999999999999999998 44567
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 174 YFSWY-YVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 174 ~~~~~-~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
.+.+. +....+|..+.+.+.|.+.|+.|++..|++.+.+.+...++.....+
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 77764 56778999999999999999999999998888776655555444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=85.12 Aligned_cols=170 Identities=15% Similarity=0.065 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++...+...+....++....++|.|+++.+|++..+.++.......+..++..+.+++.++. +++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 3455555556666777777778889999999999999999998777888888777777766554 555554444444444
Q ss_pred HHHHHHHhhc-cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 97 GMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 97 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
+..+...... .+. +....+++.++.++|.+...|+..+..- .+.+.+ ++++.
T Consensus 297 g~~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~------~G~a~ 349 (413)
T PRK15403 297 GLALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP------KGTVS 349 (413)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC------CcHHH
Confidence 4444433210 011 2333566778888998888888875332 222221 57777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLL 215 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~ 215 (539)
+++......+...++.+.+++..+ +-.+.|...+....+
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 777777788888888888888665 556666665554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.2e-06 Score=77.99 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=67.4
Q ss_pred HhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCC
Q 009231 43 YLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGC 122 (539)
Q Consensus 43 yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (539)
|+.+.+|+...++|.+.........++..+.|.++|+. ||||. ++.+.+...++..+---|
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKra----cvtycitYiLsCiTKhSp-------------- 122 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRA----CVTYCITYILSCITKHSP-------------- 122 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccc----eeeehHHHHHHHHhhcCC--------------
Confidence 55667899999999988888888888899999999997 99994 455566666666544111
Q ss_pred CCCCccchHHHHHHHHHHHhhccCccccchhh
Q 009231 123 ESATWSQLMPLYFAFGLMSLGSGGIRSSSLAF 154 (539)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 154 (539)
++..++++|++-|+.+...+.+--+.
T Consensus 123 ------qYkVLmVGR~LGGiaTsLLFSaFEsW 148 (454)
T KOG4332|consen 123 ------QYKVLMVGRVLGGIATSLLFSAFESW 148 (454)
T ss_pred ------ceEEEeehhhhhhHHHHHHHHHHHHH
Confidence 56779999999999988877665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=80.56 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
..+...++..+++++-=..+-+|=-+.+|+|..+..-+...+..+..++..+.|++..|..++|++..+++....++..+
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 33445566777888777888888888999999999999999999999999999999986669999999999999999888
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
..++... .+.+.+..+.+++|+|.|.+.....+...|..++++ -+...+.+..
T Consensus 292 ii~a~~~--------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~-------aG~~mG~WGa 344 (403)
T PF03209_consen 292 IILAGPL--------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR-------AGLFMGAWGA 344 (403)
T ss_pred HHHHHhc--------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc-------hhHHHHHHHH
Confidence 8877622 257889999999999999999999999999998854 6899999999
Q ss_pred HHHHHHHHHHHHhhhhcc----------cccchhhhHHHHHHHHHHHHHHH
Q 009231 181 FVSASSIVAVTCIVYIQD----------NLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~----------~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
...++..+|-.++|.+.| ..+|..+|.+-++..++++.+..
T Consensus 345 aQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 345 AQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887643 23577788877776666665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=76.81 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=114.6
Q ss_pred HHhhcchhhHHHHhhhhccCCh--hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccC
Q 009231 31 MATVGFTPNMILYLCREYNMET--TAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILP 108 (539)
Q Consensus 31 ~~~~~~~~~l~~yl~~~lg~s~--~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~ 108 (539)
.........++.+. .+++.+. .+.++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+++.+..+
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (338)
T COG0477 16 LDLGLLSPALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-- 91 (338)
T ss_pred HhcchHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence 34333334455444 4555555 5889999999999999999999999998 9999988888775666556655441
Q ss_pred CCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH-HHHHHHH
Q 009231 109 GAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV-FVSASSI 187 (539)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~ 187 (539)
.+.+.+++.|..+|++.+...+...+++.|.+|+ . +.|+...+.... ...+|..
T Consensus 92 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 146 (338)
T COG0477 92 -------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-----TERGLAVGLVTLGAGALGLA 146 (338)
T ss_pred -------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-----hHHHHHHHHHHHHHHHHHHH
Confidence 1467788889999999999999999999999987 2 237888888777 5788888
Q ss_pred HHHHHhhhhccc--ccchhhhHHHHHHH
Q 009231 188 VAVTCIVYIQDN--LGWKVGFGVPAVIM 213 (539)
Q Consensus 188 ~g~~i~~~l~~~--~g~~~~f~i~~~~~ 213 (539)
++|.+++.+... .+|+..|.+.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 147 LGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888777766543 57888666555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.8e-06 Score=83.54 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=109.5
Q ss_pred hHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHH
Q 009231 347 DRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAM 426 (539)
Q Consensus 347 ~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~ 426 (539)
+.++.|+.+.+.+| .+.+..|.+|+.++..+.+++++.+ +.+.++.+-.+.|+|.
T Consensus 119 qllvnp~~G~l~~~---iGy~ipm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 119 QLLVNPFFGNLIDR---IGYKIPMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGS 173 (464)
T ss_pred HHHhcccchhhHHH---hccccHHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhH
Confidence 33444555555554 6777789999999999999999987 7778889999999999
Q ss_pred HHHhhhhhhhhhccCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 009231 427 AFNMIGQTEFYYTELPKSM-SSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSM 505 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 505 (539)
.+.++...+++.+..|++. ||+++|+.....++|..+||.+.+++.+..| ++.-|.+++++++
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G----------------k~aPFlVL~~v~L 237 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG----------------KSAPFLVLAIVLL 237 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------------CcCcHHHHHHHHH
Confidence 9999999999999999876 6999999999999999999999998887664 3455999999999
Q ss_pred HHHHHHHHHhhhc
Q 009231 506 ANFLYYLACCKAY 518 (539)
Q Consensus 506 v~~~~~~~~~~~~ 518 (539)
+...+-++..+.+
T Consensus 238 ld~~L~l~vi~p~ 250 (464)
T KOG3764|consen 238 LDGALQLLVIEPT 250 (464)
T ss_pred HHHHHHHheeCcc
Confidence 9888777766543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-05 Score=73.76 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=102.5
Q ss_pred hhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009231 33 TVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKP 112 (539)
Q Consensus 33 ~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 112 (539)
.|..-.+ ..-+++.+|+|.+|...+-..-.++..++ ++.|.+.|++ |.+.++++|.+...+|..++.++.+-.
T Consensus 18 ~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~---- 90 (250)
T PF06813_consen 18 TYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR---- 90 (250)
T ss_pred ccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc----
Confidence 3434333 34567899999999999999999999875 8889999997 999999999999999998888765111
Q ss_pred CCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 113 PACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTC 192 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i 192 (539)
......+.+.+...+.+.+.+.+.++......+.||+ + |+.+.++.-....+++.+-..+
T Consensus 91 ------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~-------RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 91 ------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S-------RGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred ------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c-------cCceehhhhHHHHhHHHHHHHH
Confidence 1123566777766777777766666666666788885 2 7888888777777766665555
Q ss_pred hhhhccc
Q 009231 193 IVYIQDN 199 (539)
Q Consensus 193 ~~~l~~~ 199 (539)
-..+.+.
T Consensus 151 ~~~~f~~ 157 (250)
T PF06813_consen 151 YSAFFGD 157 (250)
T ss_pred HHHHcCC
Confidence 5444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6e-06 Score=86.33 Aligned_cols=174 Identities=7% Similarity=-0.013 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
+.+...++..+...-+.++|--+++ +++-.+.--|........+-.+.-++++++..|+ |+-+++..+++.+.+=.+.
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~ 452 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLY 452 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHH
Confidence 3445666666777677778877765 5665555556444445555566778899999996 9999999999999888888
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
.+... |.|+.+..-+++|+..+..+.+..+++++..|| +.|.++.++...
T Consensus 453 ~S~L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------~l~at~Q~l~~g 502 (618)
T KOG3762|consen 453 YSYLQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------GLRATAQGLLQG 502 (618)
T ss_pred HHHhc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------cchHHHHHHHHH
Confidence 88766 888888889999999999999999999999999 448888888766
Q ss_pred HH-HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 181 FV-SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 181 ~~-~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
.- .+|-.+|.+++|.+.+.+|-+..|.+.++.+++.++.+....+.
T Consensus 503 ~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 503 IFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred HhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55 69999999999999999999999999988887777766554443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=61.39 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTC 94 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 94 (539)
...++...+...+.++++.|++ +.|+|+.++|.+.++..+...+++++.|+++||+ ||+|.++....++
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 3455566677778899999987 5999999999999999999999999999999997 9988877765543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-05 Score=82.24 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=116.8
Q ss_pred HHHHHHHHhhcchhhHHHHhhh--hccCCh------hHHHHHHHHHHHHHHhhHHHH----HHHHHhhccchHHHHHHHH
Q 009231 25 NEAFERMATVGFTPNMILYLCR--EYNMET------TAATNIIFIWTAATNFLPIVG----ALLADSYVGRYRMIGFGCF 92 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~~~~i~~~~~~~~~i~~~~~----G~laDr~~Grk~~~~~~~~ 92 (539)
..++....||.+...++.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.+|++
T Consensus 280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~ 358 (500)
T PRK09584 280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMV 358 (500)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHH
Confidence 3445666777777777777653 111111 124555555665666666665 5556664 66788999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++.+.++.....+. . ...-+.+.+....+++++|+++..|...+++.+..|+ +.|+
T Consensus 359 l~~l~f~~l~~~~~~~~-------------~-~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg 417 (500)
T PRK09584 359 LCSGAFLVLPLGAKFAN-------------D-AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMG 417 (500)
T ss_pred HHHHHHHHHHHHHHhcC-------------C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHH
Confidence 99999888877652221 0 0112456688889999999999999999999999999 5599
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc----------ccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQ----------DNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~----------~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++++.+.....+|..++..+.+... ...++...|...+...++..++++...|
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777777777665554221 1123667777776655544444444333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=85.39 Aligned_cols=135 Identities=10% Similarity=-0.117 Sum_probs=106.6
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCcccccCCCC
Q 009231 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT-ILPGAKPPACDQLRNGCE 123 (539)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 123 (539)
++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++........ .....
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------- 345 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------- 345 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc-------------
Confidence 467999999999999999999999999999999996 999999999998888775543111 00000
Q ss_pred CCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 009231 124 SATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG 201 (539)
Q Consensus 124 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g 201 (539)
....+.+.+....++.+++.+....+...++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 346 -~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~-------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 346 -FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC-------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred -cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc-------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000122334455677888888888888999999999955 7999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-05 Score=81.15 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=115.8
Q ss_pred HHHHHHHhhcchhhHHHHhhhhccCCh----hHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH-------HHHHHHHH
Q 009231 26 EAFERMATVGFTPNMILYLCREYNMET----TAATNIIFIWTAATNFLPIVGALLADSYVGRYRM-------IGFGCFTC 94 (539)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~lg~s~----~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~-------~~~~~~~~ 94 (539)
..+....+......++.|.++..+.+. ....++.+...+...+..++.|++.||. |+|+. +.+|+++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444556666666788888875333221 1223444445566667788889999997 99973 77788887
Q ss_pred HHHHHHHHHhhc-cCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 95 LLGMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 95 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+++.+..+.... ... .....+.+.+....+++++|+++..|...+++.+..|+ +.++.
T Consensus 357 ~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~ 415 (489)
T PRK10207 357 SLGFLTAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGF 415 (489)
T ss_pred HHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHH
Confidence 777654432110 000 00012456677778899999999999999999999999 45899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc---------cc-cchhhhHHHHHHHHHHHHHHHh
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQD---------NL-GWKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~---------~~-g~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+++++....++|..+|..++..... .. .+.+.|...+...++..++++.
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877755421 01 2455666666555544444444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=67.46 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=111.7
Q ss_pred chhhHHHHhhhh-ccCChhHHHH-HHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 009231 36 FTPNMILYLCRE-YNMETTAATN-IIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPP 113 (539)
Q Consensus 36 ~~~~l~~yl~~~-lg~s~~~~~~-i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 113 (539)
.-+++..|+.+. .|++..|... +.-.++-......++...+.|.. |.|++++++.+...+...++-+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~-------- 92 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT-------- 92 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence 346899999987 9999999874 44556666777788899999986 999999999888777777777655
Q ss_pred CcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 009231 114 ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCI 193 (539)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~ 193 (539)
+...+-+.-+.-|++.+. ..+..+++-...|++ .-.++.+......-+|-.+|.+++
T Consensus 93 ---------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~-------~yq~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 93 ---------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKE-------HYQKVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred ---------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666777776665 455567777777663 356677777777777777777665
Q ss_pred hhhcc--cccchhhhHHHHHHHHHHHHHHHhc
Q 009231 194 VYIQD--NLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 194 ~~l~~--~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
-.+.. ..++...+++......+++++.++.
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 55543 4567777777776666666654443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=81.98 Aligned_cols=166 Identities=14% Similarity=0.045 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGFGCFT 93 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~~~~~~~~ 93 (539)
+.++...+..++....-|++..++|.|+.+..|+|..+++.+...+.++..++.++.|+++||. ..+|..+...+.+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567777889999999999999999999987789999999999999999999999999999993 2666666555554
Q ss_pred HHHHH-HHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 94 CLLGM-VLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 94 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+.. ..+.... +......+......+.+...++...-..+...++. +|-
T Consensus 353 ~~~~g~~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~------k~~ 403 (495)
T KOG2533|consen 353 YAIIGAISLLAAA-----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT------KAL 403 (495)
T ss_pred HHHHHHHHHHhhc-----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH------HhH
Confidence 44333 3333222 11222222222333333444555555555554432 245
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhcccccchhhhHHHHH
Q 009231 173 SYFSWYYVFVSAS-SIVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 173 ~~~~~~~~~~~lg-~~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
+..+.+..+.+.+ .+.+++..+.....++|...|.....
T Consensus 404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 5555555555444 44444444555666788888854443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=75.00 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=140.0
Q ss_pred CCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhh-ccCChh-----H-----HHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 009231 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-YNMETT-----A-----ATNIIFIWTAATNFLPIVGALLADSYVG 82 (539)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~-----~-----~~~i~~~~~~~~~i~~~~~G~laDr~~G 82 (539)
+-+|.++.++..+++.-++++.+..+.+.|+.++ +|-++. + ..+....+.+...+..++--++.+|+ |
T Consensus 255 ~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-g 333 (477)
T TIGR01301 255 YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-G 333 (477)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 3457788899999999999999999999999864 443221 1 22333444555556666777888886 9
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCC
Q 009231 83 R-YRMIGFGCFTCLLGMVLLWSTTILPGAKPP-ACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLD 160 (539)
Q Consensus 83 r-k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~ 160 (539)
+ |++..++.++.++++....+..+.+.-..+ ...|. -..++....+..++...+.|+..+.......+++++..+
T Consensus 334 ~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 334 AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGE---SLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc---ccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 5 677788888888887777654422110000 00000 000111123566677788999999999999999999999
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccccc--chhhhHHHHHHHHHHHHHHHhcCCce
Q 009231 161 KGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLG--WKVGFGVPAVIMLLSALSFFLASPFY 227 (539)
Q Consensus 161 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--~~~~f~i~~~~~l~~~~~~~~~~~~~ 227 (539)
+++ +..|..+|+++.++.+..++..+..|.+.+.+| -.+.+.+.++..+++.+..+...|+.
T Consensus 411 ~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 411 NLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred ccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 643 336999999999999999999987777554443 56688888888888888777766653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0007 Score=71.28 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 009231 350 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFN 429 (539)
Q Consensus 350 ~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~ 429 (539)
...+.+| ++.++.+.++++...+..++..+.. +...+...-++.|++|+..
T Consensus 82 ~GlLaDr-------lG~K~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 82 VFLLTDY-------LRYKPVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHHHHH-------hCchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 4445666 6667789999999999988888876 6778888899999999999
Q ss_pred hhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009231 430 MIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAV 471 (539)
Q Consensus 430 ~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i 471 (539)
. +.+.++++.+|++.|++++|+++....+|.++++.+.+.+
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999998883
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00063 Score=72.94 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCch
Q 009231 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 444 (539)
Q Consensus 365 ~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 444 (539)
++++.+.+|.++++++.+.+...+ .+...+.....+..+|.+...+...++..+..|++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 666788999999998876654322 11122333444556777777777788888999875
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 445 --MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 445 --~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
.|+++.+++....++|+.++|.+.+.+.+.. ++...|.+.++..+++++.++...+.
T Consensus 133 ~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 133 DPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred CccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7999999999999999999999998876432 24566777666556666655543333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=76.89 Aligned_cols=163 Identities=10% Similarity=0.021 Sum_probs=118.0
Q ss_pred cccccccCCCCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChh---HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 009231 3 TEPLLINKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETT---AATNIIFIWTAATNFLPIVGALLADS 79 (539)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~i~~~~~~~~~i~~~~~G~laDr 79 (539)
++|+++.+..++ .|.+...++..++....||.+..+-|......++-+.. +.+++.....++..++.++.|.+..+
T Consensus 297 ~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ 375 (599)
T PF06609_consen 297 KDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK 375 (599)
T ss_pred CCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 578888776665 36666666788888888999888888887777766653 57788888888888899999999987
Q ss_pred hccchH-HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhccc
Q 009231 80 YVGRYR-MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQ 158 (539)
Q Consensus 80 ~~Grk~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~ 158 (539)
. +|-| .++++..+++++..+++... | .|....+...++.|+|.|...........-.
T Consensus 376 i-r~~Kw~li~~~~~~ta~~Gama~~~--~-------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~ 433 (599)
T PF06609_consen 376 I-RHIKWQLIFGSVLMTAFCGAMAAVR--P-------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLI 433 (599)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHcc--C-------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEee
Confidence 5 7755 45677767666555554332 1 1333344556678888888776666666666
Q ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
.|+ +..+.+.++......+|+.+|..+-.-
T Consensus 434 ~p~-------~~ig~a~gL~~s~R~~GGsIg~aIy~~ 463 (599)
T PF06609_consen 434 VPD-------EDIGTATGLTGSIRSIGGSIGYAIYNA 463 (599)
T ss_pred eCc-------hHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666 348999999999999999888876543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=71.59 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=111.5
Q ss_pred chhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 009231 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (539)
+..+++.|+.+..|++..++....+.+..+..++..++-++-.|+ -..|++.+..+...+-.+..++.+
T Consensus 255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~---------- 323 (422)
T COG0738 255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG---------- 323 (422)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 347899999988999999999999999999999999999999897 777777666655444444444444
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
+ ..-+.+..+.|+..+.++|...+...+.+|++.+ .+++ .-...-+|+++-|.+-|+
T Consensus 324 -------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts------~~s~---~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 324 -------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS------VGSG---LLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred -------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc------ccce---eeeeheecchHHHHHHHH
Confidence 2 2334456789999999999999999999995442 3332 222456889999999999
Q ss_pred hcccccchhhhHHHHHHHHHHH
Q 009231 196 IQDNLGWKVGFGVPAVIMLLSA 217 (539)
Q Consensus 196 l~~~~g~~~~f~i~~~~~l~~~ 217 (539)
+.|+.|-...+......+.+..
T Consensus 381 i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 381 IADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 9999998777764444444333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.041 Score=57.97 Aligned_cols=181 Identities=10% Similarity=-0.017 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 009231 24 ANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (539)
+.-++.+.+-=+...-.+.|+.+-+.=+.--.+..-..-.+...++.+..|...||. -|.|++..+++..-++..+.+.
T Consensus 9 ~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~~s~~ 87 (432)
T PF06963_consen 9 LSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVAASCA 87 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHHHHHH
Confidence 334444433333444566666655443444444444556677778888899999997 9999999888776555443332
Q ss_pred h----hccCCCCCCCcccccCCCCCC-CccchHHHHHHH-HHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH
Q 009231 104 T----TILPGAKPPACDQLRNGCESA-TWSQLMPLYFAF-GLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW 177 (539)
Q Consensus 104 ~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~ 177 (539)
. -..+. ... +......+++.. ++-.+..-.......+.=-|+...=.+ +..+.+.+..+.
T Consensus 88 ~~~~l~~~~~-------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~-~~~~~La~~NA~ 153 (432)
T PF06963_consen 88 LFLLLLSYPS-------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAG-GDPGALARMNAT 153 (432)
T ss_pred HHHHHHhCCc-------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcC-CChhhHHHHHHH
Confidence 1 10010 000 000111112211 111122111222222222333221110 011456777766
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHH
Q 009231 178 YYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALS 219 (539)
Q Consensus 178 ~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~ 219 (539)
..-.=-+--++||++.|.+.+..+......+.+..-+++...
T Consensus 154 mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 154 MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 666667889999999999988888887777666666666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=70.78 Aligned_cols=184 Identities=15% Similarity=0.091 Sum_probs=101.1
Q ss_pred CcchhHHHHHHHHHHH-HHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH
Q 009231 15 GLRTLPFIIANEAFER-MATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT 93 (539)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 93 (539)
.+|+....+....+.+ .++..+..+.+.. -+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 3454544444444444 4445555555555 4566766543 4444556666777777889999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 94 CLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+.++.++++.......... ..........+....+.......+..|....+.+|.+|. +.|+.
T Consensus 369 m~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYP----------NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhccCC----------CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHhh
Confidence 9999988886542111000 000000111122222223333333456666788999999 55788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
+.++......+...+-........+..++...|...+....+...
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 777755544433332221222222222234556655555554444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.3e-07 Score=94.90 Aligned_cols=183 Identities=14% Similarity=0.165 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
+....+....+..+..+....+...++.+..|.+.. -.......+...++.+++.++.||+ |||++++.+....++.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444444444444555566777777 2222334455667777788999997 9999999998888777
Q ss_pred HHHHH-HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhcc-CccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 98 MVLLW-STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSG-GIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 98 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
...++ .....+. ...+.+.. .++...+...+.+ +..+....+.+|.+|.+ .|.++.
T Consensus 330 ~~~~~~~~~~~~~--------------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~-------~R~~~~ 387 (451)
T PF00083_consen 330 SLILGIIFFLGVS--------------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTK-------VRSTGI 387 (451)
T ss_pred ccccccccccccc--------------cccccccc-cceeeeecccccccccccccccccccccccc-------cccccc
Confidence 76665 1110000 00000111 1222222222222 34566778889999994 489999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
++.+....+++.+++.+...+.+..+-...|.+.+...++..+..+...|
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 99999999999999988888877766445566666655555554444333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=71.31 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
++++..+.+|.++..++.++.++.. ++ ....+.+.+.+..++.|+|++..++.....+.+..|
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~---------~~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp- 150 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTF---------QE-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP- 150 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHh---------cc-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence 6777899999999999998888763 00 011257777778889999999999988888888887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
+.||+++|+.....++|+.+.+.+...+.. .+...+|++++++.++..++.+...+.
T Consensus 151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 679999999999999999865554443321 013455666776666665555555443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=78.96 Aligned_cols=112 Identities=10% Similarity=-0.037 Sum_probs=80.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhcCCCCCc--------------cccc--cchHHH
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIA-------------INEGISDDL--------------RAVV--QMSAMW 414 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~-------------~~~g~~~~~--------------~~~~--~~~~~~ 414 (539)
.++++.+.+|.++++++.++.+..+....... .++..+.+. .+.. ...+..
T Consensus 95 ~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (633)
T TIGR00805 95 LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLL 174 (633)
T ss_pred cCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehh
Confidence 55567899999999999888876642211000 001111100 0000 112445
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009231 415 QLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDIT 475 (539)
Q Consensus 415 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~ 475 (539)
++..-++.|+|++...+....++.+.+|++.|+++.|+++....+|..+|+.+.+.+.+..
T Consensus 175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 6678899999999999999999999999999999999999999999999999988876543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.076 Score=56.65 Aligned_cols=170 Identities=8% Similarity=-0.037 Sum_probs=102.6
Q ss_pred CCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccC-----ChhHHHHHHHHHHHHHHhh-HHHHHHHHHhhccchHHH
Q 009231 14 GGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNM-----ETTAATNIIFIWTAATNFL-PIVGALLADSYVGRYRMI 87 (539)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----s~~~~~~i~~~~~~~~~i~-~~~~G~laDr~~Grk~~~ 87 (539)
..+|.+.....+.|+-.++|+..- -+++.+.. +.+...++.....+...+. .++-+++++|+ +|+|++
T Consensus 4 ~E~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf 77 (472)
T TIGR00769 4 HELKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALF 77 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhH
Confidence 445667776667777766665333 34666665 3356777777665555544 78899999997 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--CCC--CCcccccCCCCC-CCc----cchHHHHHHHHHHHhhccCccc-cchhhhcc
Q 009231 88 GFGCFTCLLGMVLLWSTTILPG--AKP--PACDQLRNGCES-ATW----SQLMPLYFAFGLMSLGSGGIRS-SSLAFGAE 157 (539)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~~~~~~~~~~-~~~----~~~~~~~~~~~l~g~g~g~~~~-~~~~~i~~ 157 (539)
.+....+..-..+.++.- .|. ... +.||+.-.+.+. ..+ .+.|...+..+...+-.....+ .-+++..|
T Consensus 78 ~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 78 YTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988887777766666542 121 000 112222110000 000 0112111222222222222333 55788999
Q ss_pred cCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009231 158 QLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (539)
Q Consensus 158 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~ 197 (539)
.++.++ -.|.++.++.+.|+|..+|+.+..++.
T Consensus 157 i~t~~q-------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 157 ITTIDE-------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred cCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999844 688999999999999999999888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00018 Score=74.26 Aligned_cols=179 Identities=17% Similarity=0.087 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHH--------HHHHHHHHHHh-hHHHHHHHHHhhccchHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATN--------IIFIWTAATNF-LPIVGALLADSYVGRYRMI 87 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------i~~~~~~~~~i-~~~~~G~laDr~~Grk~~~ 87 (539)
+..+-.+..-|.--++||+...+...-++ .+|+.+.+... ...+...+.++ +.+++.++.|+. |||+.-
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 44444455666677888888877776654 55555443333 22233333333 666778899996 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHH-HHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 88 GFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFA-FGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
+.|.+++++..+.++..-+ | ..+ ...+++. -+.+-++.-+-.......-+|.+|.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~----------~------~~~---~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa----- 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN----------Q------LEN---TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA----- 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc----------c------ccc---cCceeehHHHHHHHHhcCCCceeEEeehhhchH-----
Confidence 9999999888777774331 0 111 1112222 1222233333344445566899998
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-----cccchhhhHHHHHHHHHHHHHHHhc
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-----NLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~-----~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
+.|+.+.++...+.-+|+++|.....++.+ ..+.+.+|++.+...++..+..++.
T Consensus 438 --rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 438 --RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred --HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 779999999999999999999999999988 7789999999999888877766554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=52.04 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=62.4
Q ss_pred HHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 009231 29 ERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTT 105 (539)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~ 105 (539)
.|++| +.+.+.++++.++|.++++++.+...+++.++.+...++.++. .+++.+..+++...+....+++..
T Consensus 7 gRFay----TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 7 GRFAY----TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHH----HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555 4455567889999999999999999999999999999999985 889999999999999988888765
|
Note that many members are hypothetical proteins. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00095 Score=67.52 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=84.2
Q ss_pred HHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHH
Q 009231 345 LYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGL 424 (539)
Q Consensus 345 l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~ 424 (539)
+.+.+..|+++++.++ .+++..+.+|.+..++++++++... +...++.+-++.|+
T Consensus 79 ilQ~~sS~~~G~~SD~---yGRkpvll~c~~~va~s~ll~~~S~----------------------~F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 79 ILQFISSPLWGCLSDR---YGRKPVLLACLIGVALSYLLWALSR----------------------NFAAFVLARFLGGI 133 (451)
T ss_pred HHHHHhhhhhhhhhhh---hCchHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhh
Confidence 3455567778887777 8888999999999999999888775 55555655778888
Q ss_pred HHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 425 AMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 425 g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
.-+-..+ ..+++.+.++++.|+.+++..++..++|-++||.+.+.+..
T Consensus 134 ~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 FKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 7666555 56788899999999999999999999999999999887654
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00017 Score=74.38 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhh---ccchHHHHH-HHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSY---VGRYRMIGF-GCF 92 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~---~Grk~~~~~-~~~ 92 (539)
+.+..+....+.-.+++-.=..++++|++ ++|.+..-.+.+-.+.-+...+.+|+.|..+||. +||||-++. +..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44555555666677777777788999975 8999999999998888999999999999999986 688886554 445
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
..+++..+...+.++.... |||-++ ...+.....++++.-+.=+.....+...-++++|...++++ ++|
T Consensus 111 ~i~~~l~Lig~aaDig~~l---gd~~~~---~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~~- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLL---GDNERK---PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KTR- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhHHh---cCCccc---ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hhc-
Confidence 6777777777776555422 333221 11222445566777777777777888999999999887663 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYI 196 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l 196 (539)
+.+++.....+|..+|+..+++.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 89999999999999999887754
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.064 Score=55.72 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHH
Q 009231 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (539)
Q Consensus 56 ~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (539)
+.+..+-.+-..+.-+..-+..+|+ ..+.=+.++.++.++|+++.+++. +.+.-++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~ 117 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLL 117 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHH
Confidence 3455555555666666777888886 765556666778888888888765 6777889
Q ss_pred HHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc-cccchhhhHHHHHHHH
Q 009231 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD-NLGWKVGFGVPAVIML 214 (539)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~-~~g~~~~f~i~~~~~l 214 (539)
+..+.+++.|.--..-.++. ..+++ ...+.+..+...++++|+..=..+.+ ..+.|..+.+..++.+
T Consensus 118 Gv~las~ssg~GE~tfL~lt-~~y~~-----------~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~ 185 (402)
T PF02487_consen 118 GVVLASLSSGLGEVTFLSLT-HFYGK-----------SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPA 185 (402)
T ss_pred HHHHHhhhhhhhHHHHHHHH-HhcCc-----------cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 99999999998877777764 35554 12344444555666666654333433 2344666766665554
Q ss_pred HHHHHHHh
Q 009231 215 LSALSFFL 222 (539)
Q Consensus 215 ~~~~~~~~ 222 (539)
+-.+.++.
T Consensus 186 ~~~~~~f~ 193 (402)
T PF02487_consen 186 IFLLSYFF 193 (402)
T ss_pred HHHHHHHH
Confidence 44444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0078 Score=64.07 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=107.9
Q ss_pred hHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHH-HHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 009231 39 NMILYLCREYNMETTAATNIIFIWTAATNFLPIVGA-LLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQ 117 (539)
Q Consensus 39 ~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G-~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 117 (539)
.++.|+...++++..+.+...+..+....++.++.. .+.-. +|-|+++..|++...+.....++++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------ 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------ 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence 447788889999999999999999999999998887 66666 5999999999999999999999888
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009231 118 LRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQ 197 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~ 197 (539)
+.|+.+....+.++. +...|+..++++.+.++++ +++.+++......+...++|.+-+.+.
T Consensus 330 -----------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e-------~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 330 -----------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE-------QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred -----------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc-------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 667777776655444 5668999999999998855 899999999999999999998877653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.04 Score=49.58 Aligned_cols=108 Identities=9% Similarity=0.136 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHH
Q 009231 56 TNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYF 135 (539)
Q Consensus 56 ~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (539)
-.-.++......+..+++..+.++. |.|+.+.+|.+.+.+-..... -. +.+.++.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~~-----------------------~~~~l~~ 94 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-YP-----------------------NSYTLYP 94 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-hh-----------------------hHHHHHH
Confidence 3344455666677778888889986 999999999887764332222 11 5677889
Q ss_pred HHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 136 AFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 136 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
+-++.|+|.+..+++.-.++.+..++ +.|++-.+++....+.+.++|.++.-.
T Consensus 95 ~s~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 95 ASALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766 447777888777777777777755433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=59.38 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=97.1
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
+++.++++..-+....||+..+.+-.-+ ..-|++...+|.+.....+++.++..++|.++||.-.-|+++++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 4455555555555556665555554333 245788889999999999999999999999999973445556665555555
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+...+.... +.. ...+.++..-.+.|++..+..|...-+..|..=|..+ +...|
T Consensus 345 ~~~~l~~~t-~~~------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsG 398 (480)
T KOG2563|consen 345 GTLMLLTCT-LFL------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSG 398 (480)
T ss_pred HHHHHHHhh-ccC------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccce
Confidence 532222222 111 1334455556677788788888888887776544332 33445
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccc
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLG 201 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g 201 (539)
+.....++-+.+=..+-+...+..+
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccC
Confidence 5555555555555555566655554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.059 Score=58.62 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=95.0
Q ss_pred HHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHH
Q 009231 340 TIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYL 419 (539)
Q Consensus 340 i~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 419 (539)
.+...++..+..++.++ ++++..+.+++++..++-+..++.. +.+.+++.-
T Consensus 128 ~~G~~vG~~i~g~lsD~-------~GRk~~~~~~~~~~~i~~~~~a~a~----------------------~~~~~~~~R 178 (521)
T KOG0255|consen 128 FLGVLVGSLIFGPLSDR-------FGRKPVLLVSLLLFIIFGILTAFAP----------------------NYWMFLIFR 178 (521)
T ss_pred HHHHHHHHhhheehHhh-------cccHHHHHHHHHHHHHHHHHHHHhC----------------------cHHHHHHHH
Confidence 33444444456677777 4555688888888888887777765 788888888
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHH
Q 009231 420 VLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWL 499 (539)
Q Consensus 420 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 499 (539)
++.|++..........+..|..+++.|+.+..+ ......++.+++.....+.+ + +.+.++.
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~----------Wr~~~~~ 239 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------D----------WRWLFWI 239 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------h----------HHHHHHH
Confidence 999999999999999999999999999999999 77788888888887776552 2 3677777
Q ss_pred HHHHHHHHHHH
Q 009231 500 LTALSMANFLY 510 (539)
Q Consensus 500 ~~~~~~v~~~~ 510 (539)
......+.++.
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77766666555
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=59.39 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCch---
Q 009231 368 LRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS--- 444 (539)
Q Consensus 368 ~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 444 (539)
+.+.+|.++..+|.+++.... ... ......+...+.+.+.+.++|.+..=|....+..++.+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~-----------~~~--~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSA-----------IPP--SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHH-----------TSS--SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHH-----------hcc--hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 357788899999988866554 000 0011234566788888999999999999999999988776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009231 445 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 521 (539)
Q Consensus 445 ~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 521 (539)
.|..+...+....++|..++..+.+.+.+.. ++...|++.++..+++++.++...++++..
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 4666778888999999999988877766433 356778888888888888877766665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0081 Score=63.16 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=96.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
++.++.+.+|.+++++|.++++..+ ..+...+.+.+.++++|.++.=|....+..+..|+
T Consensus 89 LG~~~tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 89 LGTRRTIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 6667889999999999999887652 02455677788888999999999999999988766
Q ss_pred h--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009231 444 S--MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPF 521 (539)
Q Consensus 444 ~--~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 521 (539)
+ .|-.+.+++....++|+.++|.+.+.+.... +++..|.+.++-...+++.++...|+.+..
T Consensus 149 ~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 149 DDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred CCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 3 2555788888889999999999999876433 256778888888888888888777666543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.074 Score=51.82 Aligned_cols=93 Identities=10% Similarity=0.083 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
.+++..+.+|.....+|+....... ++ ...+.+.|.+.....+.+.+....+.+...-..+..|+
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~---------~~------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAV---------SG------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH---------hC------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 6777888999999999988776554 11 01224566666666677778887777777777788986
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
.||++.|+.-...++++.+-..+...+.
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 6999999999999999887766655443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.013 Score=64.72 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=98.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh------hc------------CCC---CCccc----ccc-chHH
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARR----SIAI------NE------------GIS---DDLRA----VVQ-MSAM 413 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~----~~~~------~~------------g~~---~~~~~----~~~-~~~~ 413 (539)
..+.+++.+|+++++++.++.++.+...+ +... +. +.. .+++. ... ..+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 45557899999999999999887753311 1110 00 000 00111 111 1344
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC---------CCCCC
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGG---------NGGWI 484 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~---------~~~~~ 484 (539)
.++.+.++.|+|+.-.+|....++.+.+.++....+.|+..++..+|-++|-.+.+...+..-+.+ ...|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 577888999999999999999999999999999999999999999999999888887765543321 12222
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009231 485 PSNINKGHYDYYYWLLTALSMANFLYYLACCKAYG 519 (539)
Q Consensus 485 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 519 (539)
|.++.-|.+.+.+.++..+.++++=|+.+
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 12333355556666666665555444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.065 Score=56.87 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=93.6
Q ss_pred HHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHH
Q 009231 343 IGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLS 422 (539)
Q Consensus 343 ~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~ 422 (539)
..+...+..|....+..|. .+.++-+.+|.++++++-++-...+.. ++-..+++..+.++.
T Consensus 80 ~slg~~i~~liF~~Ws~k~--~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~~~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 80 SSLGHAIFSLIFGIWSNKT--GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------PNGVKYLMLVARILT 140 (488)
T ss_pred HHHHHHhcchhhccccccc--CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------ccchHHHHHHHHHHc
Confidence 3344444455555555553 455677999999999997776444310 112677888899999
Q ss_pred HHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHH
Q 009231 423 GLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTA 502 (539)
Q Consensus 423 g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 502 (539)
|+|.+-.... =.++....-.+.|-++++..+....+|.++||.+...+......+ . .+.++ ....-|...-|+.+.
T Consensus 141 Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G-~-~i~~~-~~~n~YTap~w~m~i 216 (488)
T KOG2325|consen 141 GVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG-F-MILPG-LIFNMYTAPAWLMAI 216 (488)
T ss_pred CcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc-e-EEcCc-ceEEecchHHHHHHH
Confidence 9986554443 234444444556777788777777888888887766554332211 1 12221 111124445566677
Q ss_pred HHHHHHHHHHHHhhhccc
Q 009231 503 LSMANFLYYLACCKAYGP 520 (539)
Q Consensus 503 ~~~v~~~~~~~~~~~~~~ 520 (539)
+.++.+++..+..+|..+
T Consensus 217 ~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 217 LWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHHHhheeeccc
Confidence 777777777777766543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.5 Score=44.93 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 412 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 412 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
....+..+.+.+......+.+..++..+.+|++.-|++|.+.|+..++|+.-=..+...+.+
T Consensus 369 ~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 369 YILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 33455567777777777888889999999999999999999999999988765555555543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0015 Score=71.11 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=3.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h--------hcCCC----------------CCccccccchHHHH
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIA----I--------NEGIS----------------DDLRAVVQMSAMWQ 415 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~----~--------~~g~~----------------~~~~~~~~~~~~~l 415 (539)
.++.+++.+|.++++++.++++.-+-...... . ++.++ +.+++........+
T Consensus 65 ~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 144 (539)
T PF03137_consen 65 GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVF 144 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHH
Confidence 45567899999999999998875543211110 0 00111 00011122235567
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009231 416 LPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDI 474 (539)
Q Consensus 416 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~ 474 (539)
+++.++.|+|..-.++...+++.+.++++..+.+.|+...+..+|-.+|-.+.+...+.
T Consensus 145 ~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 145 ILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp -------SSS-------------------------------------------------
T ss_pred HHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999988887766543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.49 Score=51.46 Aligned_cols=161 Identities=9% Similarity=-0.080 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHH-HHHHHHHHHHH-HHH
Q 009231 25 NEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-FGCFTCLLGMV-LLW 102 (539)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-~~~~~~~~~~~-l~~ 102 (539)
..++..++--+.-....-.+...+|-+..+.+.+++++..+..++..++|+++++. -|+...+ ++..+....+. ++.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333334455555667899999999999999999999999999887553 3332211 11111111111 111
Q ss_pred HhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHH
Q 009231 103 STTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFV 182 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~ 182 (539)
... +. .......++...++.++..|+..|....+..+...+ +-++..+-.|...
T Consensus 101 ~~~--~~----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~--------~~g~~~g~ly~~n 154 (521)
T PRK03612 101 AAF--AF----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ--------HLGHNVATVLAAD 154 (521)
T ss_pred HHH--HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------chhhhhhhhHhHH
Confidence 111 00 000111223334456677777777766665543221 1345567777788
Q ss_pred HHHHHHHHHHhhhhc-ccccchhhhHHHHHH
Q 009231 183 SASSIVAVTCIVYIQ-DNLGWKVGFGVPAVI 212 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~-~~~g~~~~f~i~~~~ 212 (539)
.+|+++|.++.+++. ...|-....++.+.+
T Consensus 155 tlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 155 YLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999998888764 466754444444443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.36 Score=43.39 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
.+.+..+.+|.+...+-.... +. .+.+.+++.-++.|+|.+..+++.-.++.+...+
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~-~~----------------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASF-FY----------------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-Hh----------------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 556677778777776533332 22 1466778888999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNAV 471 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~i 471 (539)
+.|++..|++....+.+..+|..+.-.+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888775443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.38 Score=53.68 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
+++.+.+.++.++..++..++++.. .. ..............+.+.++|.+..-|...++..+..++
T Consensus 51 lG~~~tIl~~~ii~~lG~~llai~a-----------~~---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 51 LGKFKTILYLSIVYVVGHALLSFGA-----------IP---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc-----------Cc---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 5566778888888888887776542 00 000011122345567788889999999999999988765
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009231 444 S---MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520 (539)
Q Consensus 444 ~---~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 520 (539)
+ .|-....++....++|+.+++.+.+.+.+..+.-+ ....+...|.+.+++.++++++++...+++++
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---------~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~ 187 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG---------CQDCYPLAFGVPAILMILALIVFMAGSKMYKK 187 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------cCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4 36667888888899999999888887653221000 00124667888888888888887776665543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.4 Score=46.62 Aligned_cols=137 Identities=12% Similarity=0.010 Sum_probs=106.3
Q ss_pred chhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 009231 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (539)
.-..+..|+... |+++...|..-+...+....+..+..++.+|+ |..|.-++++........++..+-+.|...
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~---- 350 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP---- 350 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 346788898766 99999999999999999999999999999997 999999999988877766666555444300
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIV 194 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~ 194 (539)
+ +..+...++.+.++.=+|-=++--+.+-++.|..|+ ++|+...++.....++.-.+...++-
T Consensus 351 --~-------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 --F-------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred --c-------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 112344556666666667667778888889999988 45999999999999999888885543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.49 Score=50.27 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=73.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---C
Q 009231 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTE---L 441 (539)
Q Consensus 365 ~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~---~ 441 (539)
+++.-+.+|.++.+++.+.++... ....+.......+++..+|..+..........|. -
T Consensus 57 rr~~Y~~i~~~~~~~~~~~~~~~~------------------~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~ 118 (433)
T PF03092_consen 57 RRKPYMIIGWLLGAVSALVLALLP------------------ASESSAAIAVVLLFLASFGYAFADVAADALVVELARRE 118 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcc------------------cccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Confidence 344556777777766666555543 0112333344455667777777777777666654 4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 442 PKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 442 P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
|.+ +|..++.....+.+|+.++..+.|...+..+ +...|.+.+.+.++..+..+...++
T Consensus 119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 555 8899999999999999999988877654321 2334555565656665555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.4 Score=45.00 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=86.2
Q ss_pred HHHHHhhcchhhHHHHhhhhccCChhHHHHHHHH-HHHHHHhhHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHh
Q 009231 28 FERMATVGFTPNMILYLCREYNMETTAATNIIFI-WTAATNFLPIVGALLADSY--VGRYRMIGFGCFTCLLGMVLLWST 104 (539)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~-~~~~~~i~~~~~G~laDr~--~Grk~~~~~~~~~~~~~~~l~~~~ 104 (539)
+++..+.++.+....+ ++.++.+....-.+.+. ...+..++.+..+.+++|. +||++++.++..+..++.++.-++
T Consensus 254 ~~~Sf~~~iypt~i~f-t~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~ 332 (461)
T KOG3098|consen 254 LETSFWISIYPTCISF-TRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS 332 (461)
T ss_pred HHHHHHHhccchhhhh-hhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc
Confidence 3444444444444433 33444444433333222 3333444455556666443 499999999999998888777654
Q ss_pred hccCCCCCCCccccc----CCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 105 TILPGAKPPACDQLR----NGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
. | .|.| .......+.+.....+.-.+.|++-+..++....++++.+|+ + |..+++++..
T Consensus 333 ~--p-------~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~-------~~~~fsi~kf 395 (461)
T KOG3098|consen 333 F--P-------NDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD-D-------RAQAFSLFKF 395 (461)
T ss_pred c--c-------ccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-c-------hHHHHHHHHH
Confidence 4 2 1221 011122222444555666789999999999999999999954 2 6777777666
Q ss_pred HHHHHHHHHHH
Q 009231 181 FVSASSIVAVT 191 (539)
Q Consensus 181 ~~~lg~~~g~~ 191 (539)
-..++..++..
T Consensus 396 yq~~~s~v~~f 406 (461)
T KOG3098|consen 396 YQSVASCVAFF 406 (461)
T ss_pred HHHHHHHHHhh
Confidence 66666655443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.22 E-value=16 Score=38.00 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 009231 411 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLI 467 (539)
Q Consensus 411 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l 467 (539)
+.++.+....++|+..+-...-...++.+.+|++.+-.+..+..+.-..|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455666667888888888888888888889999988888888887777777777665
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.83 E-value=12 Score=39.27 Aligned_cols=86 Identities=15% Similarity=0.095 Sum_probs=66.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
.+.+..++.+.+...+...++.+.+ +.+++-..-+++|++... -.+.+++++..+|+
T Consensus 68 l~Ykpviil~~~~~i~t~~lll~~~----------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~ 124 (412)
T PF01770_consen 68 LRYKPVIILQALSYIITWLLLLFGT----------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK 124 (412)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHC----------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH
Confidence 4445577777777777777766665 677777788888887765 66788999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNAVD 472 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~i~ 472 (539)
++--++++......-+|..++..+...+.
T Consensus 125 ~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 125 EHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98889998888888888888877766654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.7 Score=42.69 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCC
Q 009231 411 SAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINK 490 (539)
Q Consensus 411 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~ 490 (539)
.+|+.-..+++...-..+..+....-+......+.-|...|++.+..-+-.. .++-++.+..+.+ ++-....
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQs---ilT~iVvd~~g~~-----L~ir~Q~ 396 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQS---ILTLIVVDDRGLG-----LDIRTQF 396 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHH---hheEEEEcccccC-----CCcceeE
Confidence 5777777788887776666666666666777788899999999985444333 3333344322211 1000111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhh
Q 009231 491 GHYDYYYWLLTALSMANFLYYLACCK 516 (539)
Q Consensus 491 ~~~~~~f~~~~~~~~v~~~~~~~~~~ 516 (539)
--|..+|.+++.+.+++....+...+
T Consensus 397 ~~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 397 VVYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred EEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 23556788888888888766554333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.38 E-value=24 Score=38.10 Aligned_cols=172 Identities=10% Similarity=0.023 Sum_probs=92.4
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhc---cCChhHHHHHHHHHHH-HHHhhHHHHHHHHHhhccchHHHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREY---NMETTAATNIIFIWTA-ATNFLPIVGALLADSYVGRYRMIG 88 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~i~~~~~~-~~~i~~~~~G~laDr~~Grk~~~~ 88 (539)
+..++.++.+.++.++-.+.|. +.--+.+.+ ..+++....+.....+ ++.+...+-.+++|++ +|.+++.
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 4445566665555555544432 111112222 2356666666654444 4556677889999997 9999998
Q ss_pred HHHHHHHHHHHHHHHhhccCC--CCCCC--ccccc-CCCCCCCc----cchHHHHHHHHHHHhhccCccc-cchhhhccc
Q 009231 89 FGCFTCLLGMVLLWSTTILPG--AKPPA--CDQLR-NGCESATW----SQLMPLYFAFGLMSLGSGGIRS-SSLAFGAEQ 158 (539)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~--~~~~~--~~~~~-~~~~~~~~----~~~~~~~~~~~l~g~g~g~~~~-~~~~~i~~~ 158 (539)
+.+..+..-..+.++.- .|. ...|. ||+.- ...+...+ .+.|...+..+..-+-.....+ .-+.+..|.
T Consensus 94 ~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877776666666543 221 11111 22110 00000000 0111111111111111111111 236778888
Q ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009231 159 LDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQD 198 (539)
Q Consensus 159 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~ 198 (539)
++. ++-.|.++.++.+.|+|.+++..+..++.+
T Consensus 173 tt~-------~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 173 TTV-------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 447889999999999999999988887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.18 E-value=3.4 Score=40.43 Aligned_cols=140 Identities=10% Similarity=0.076 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCcccccCCCCCCCccchH
Q 009231 55 ATNIIFIWTAATNFLPIVGALLADSYVGRY--RMIGFGCFTCLLGMVLLWSTTI-LPGAKPPACDQLRNGCESATWSQLM 131 (539)
Q Consensus 55 ~~~i~~~~~~~~~i~~~~~G~laDr~~Grk--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (539)
-|.+.+.+.++..++.-+..++..|- ..| ..+.+..++......+..+..+ -|. ..++.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~-----------------kes~~ 345 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS-----------------KESPS 345 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC-----------------cCCch
Confidence 46777778777777776666666653 222 3455555555544444433331 121 12445
Q ss_pred HHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHH
Q 009231 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 132 ~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
.-+++..++-.+.|.++|+.+-+=.+..|+ +.|+..++++..-.|+-.-++-...-.=....+-|..|.++..
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPE-------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPE-------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCH-------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 567888888899999999999999999988 4489999998888777654433211111112356678888887
Q ss_pred HHHHHHHH
Q 009231 212 IMLLSALS 219 (539)
Q Consensus 212 ~~l~~~~~ 219 (539)
...++.+.
T Consensus 419 ~~~~a~i~ 426 (454)
T KOG4332|consen 419 FLFVASIL 426 (454)
T ss_pred HHHHHHHH
Confidence 76665544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=86.08 E-value=9.8 Score=39.77 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc
Q 009231 364 LSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK 443 (539)
Q Consensus 364 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 443 (539)
.+...++.+...++++++++.++.+ +.+.-++..++.+++.++--.....+. +..|+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~ 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc
Confidence 6667788888889999998887654 344444555555555544444444443 23443
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009231 444 SMSSIASTLSGAGLSAANLVASLIMNA 470 (539)
Q Consensus 444 ~~rg~~~gi~~~~~~ig~~lg~~l~~~ 470 (539)
...+-|....+.++.+|+..-..
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~ 165 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLG 165 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHH
Confidence 34677777788888888766543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=85.81 E-value=55 Score=35.17 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=37.5
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 431 IGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDD 473 (539)
Q Consensus 431 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~ 473 (539)
-..+.++-+....++..+..++.....++|..+|+.+...+.+
T Consensus 148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888899999999999999999999999999998877653
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.31 E-value=29 Score=33.02 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccCCc-hhhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 009231 412 AMWQLPYLVLSGLAMAFNMIGQTEFYYTELPK-SMSSIASTLSGA-GLSAANLVASLIMNAVD 472 (539)
Q Consensus 412 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~-~~~ig~~lg~~l~~~i~ 472 (539)
.+.++......|++.+...+....++.+..|+ +.|+...+.... ...+|..+++.+.+.+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555568899999999999999999998 788999998888 57778888886655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 539 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 4e-77
Identities = 80/542 (14%), Positives = 168/542 (30%), Gaps = 87/542 (16%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREY------NMETTAATNIIFIWTAATNFLP 70
R +P+IIA+EA ER + G + +L + A ++ + F P
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 71 IVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130
++G +AD + G+Y I + +G L + +
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFL----------------------AIFEHSV 109
Query: 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAV 190
Y L++LGSGGI+ +F +Q D+ + + ++ A F +Y ++ S A
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA----FDMFYFTINFGSFFAS 165
Query: 191 TCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250
+ + N G V FG+P V+M ++ + F+L Y+ G V+ ++
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225
Query: 251 RRTKLPTQ----ATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNS 306
+ A + + + L A + +
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285
Query: 307 LCTV--------------------------EQASSM----DRHVTPNFEIPSGSFNIFAI 336
+Q +S +
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNP 345
Query: 337 LTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAI 396
L + + I + + P ++ K + +MG G+ + S ++
Sbjct: 346 LLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM----- 397
Query: 397 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAG 456
+S WQ+ L EF Y++ PK+M +
Sbjct: 398 --------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449
Query: 457 LSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCK 516
++ NL L +V T + + ++ + +++ ++ + + +
Sbjct: 450 VTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYAR 504
Query: 517 AY 518
+Y
Sbjct: 505 SY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 33/218 (15%)
Query: 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYN-----METTAATNIIFIWTAATNFLPI 71
L + E +ER + G ++ Y+ + + A +I+ I+ +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 72 VGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLM 131
+G +AD +G + +G +LG ++L A
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVL-----------------------ALPFGAS 109
Query: 132 PLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVT 191
L+ + L+ +G+G ++ + D+ D + G FS + ++ + +A
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-----FSIFVFGINLGAFIAPL 164
Query: 192 CIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVK 229
+ Q+ G+ V F + A+ M + L ++ +
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 48/332 (14%), Positives = 98/332 (29%), Gaps = 97/332 (29%)
Query: 221 FLASPFYVKSKANTSLLPGLTQVLVASFKNRR-------TKLPTQATEEMYHHGKGSMRL 273
FL SP + + P + + ++R K + + + L
Sbjct: 93 FLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 274 MPSENLRFLN------KACMA-----KHPEQDLTPD-------GRASNPNSLCTVEQASS 315
P++N+ ++ K +A + Q ++P ++ +E
Sbjct: 148 RPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQK 204
Query: 316 MDRHVTPNF-EIPSGSFNIF-------AILTLTIWIGLYDRAVLPL----------ASKI 357
+ + PN+ S NI A L + Y+ +L L A +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 358 KGKPCQLSLKLRMGIGLLFST--ASMTAWAIVEAARRSIAINE---GISDD-----LRAV 407
C++ L +T +T + A I+++ ++ D L
Sbjct: 265 S---CKI----------LLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 408 VQMSAMWQLPYLVLSGLAMAFNMIG--------QTEFY-YTELPKSMSSIASTLSGAGLS 458
+ LP VL+ ++I + + + K + I S+L L
Sbjct: 311 LDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLE 367
Query: 459 AANLVASLIMNAV--DDITKRGGNGGWIPSNI 488
A +V IP+ +
Sbjct: 368 PAEYRKMFDRLSVFPPSA--------HIPTIL 391
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 539 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.15 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.78 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.13 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=265.41 Aligned_cols=433 Identities=16% Similarity=0.175 Sum_probs=283.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhh-----ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHh-hccchH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRYR 85 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr-~~Grk~ 85 (539)
.+.++|..+.+....+++++++|++.++++.|++++ +|+|..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345667888888899999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCC
Q 009231 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (539)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~ 165 (539)
++..+.++.+++.++++++. +.+.++++|+++|+|.+...|+..++++|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999999888655 67789999999999999999999999999999865
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecC---C-CCCChhhHH
Q 009231 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---A-NTSLLPGLT 241 (539)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 241 (539)
+.|+.++++++...++|..+||.+++++.++.||++.|++.++..+++.+..+...++..+++ + ++.+..+..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 447889999999999999999999999999999999999988777666665544433322111 1 111112211
Q ss_pred HHHHH--------------HHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccc
Q 009231 242 QVLVA--------------SFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSL 307 (539)
Q Consensus 242 ~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (539)
+.... .......... +........ .. .....+... ...........+......+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSLP--AYINLLTIV----AI--AIPVFYFAW--MISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCTT--HHHHHHHHH----HH--HHHHHHHHH--HC------------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccc--cchhhhhHH----HH--HHHHHHHHH--HhhcccccHHHHHHHHHHHHH
Confidence 11100 0001000000 000000000 00 000000000 000000000000000000000
Q ss_pred h---------hHh----hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHH
Q 009231 308 C---------TVE----QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGL 374 (539)
Q Consensus 308 ~---------~~~----q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~ 374 (539)
+ ..+ .........+.. ....+.....+.+..++..++. ..+.+|+++|+ ......+..|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~l~~r~~~r~--~~~~~~~~~~~ 361 (491)
T 4aps_A 289 FIAAVLFWAIEEQGSVVLATFAAERVDSS-WFPVSWFQSLNPLFIMLYTPFF----AWLWTAWKKNQ--PSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHSCCCS-SSCSGGGTTHHHHHHHHHHHHH----HHHHHHTTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhccC-ccCHHHHhccchHHHHHHHHHH----HHHHHHHhccC--CCchHHHHHHH
Confidence 0 000 000111111100 0334555666666666666653 44567777664 55677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHH
Q 009231 375 LFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG 454 (539)
Q Consensus 375 ~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~ 454 (539)
.+.+++++++...... .+ ...+.+.+++.+.+++.+++++...|..++++.+.+|++.||+++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 362 MFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp HHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988877665410 00 0123456677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009231 455 AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520 (539)
Q Consensus 455 ~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 520 (539)
...++|+.+++.+.+.+.+. ++...|+..+++.+++.++.+...++.++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997765431 23566777788888777777766655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=265.24 Aligned_cols=454 Identities=18% Similarity=0.280 Sum_probs=271.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhcc------CChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~ 86 (539)
++++|.++.+.+..++.++++|++.++++.|+++++| +|..+++++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4445677888889999999999999999999999999 9999999999999999999999999999994499999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
+.++.++..++.++++++. .+.+.++++|+++|++.+...|+..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999988887643 1567788999999999999999999999999998653
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHH
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (539)
+++...+++++...++|..+||.+++++.++.||++.|++.++..+++.+..+...++.+++++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 223556666999999999999999999998899999999988877766666555444433222222111111111111
Q ss_pred HHhhccCCCCC--------------------CC-------------------chhh--hccC-CCCcccCCCcchhhhhh
Q 009231 247 SFKNRRTKLPT--------------------QA-------------------TEEM--YHHG-KGSMRLMPSENLRFLNK 284 (539)
Q Consensus 247 ~~~~~~~~~~~--------------------~~-------------------~~~~--~~~~-~~~~~~~~~~~~~~~~~ 284 (539)
..++++...+. +. .+.+ .+.. +........+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (524)
T 2xut_A 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRI 301 (524)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHH
T ss_pred HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHH
Confidence 11111100000 00 0000 0000 00000000000000000
Q ss_pred hhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCC
Q 009231 285 ACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 364 (539)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~ 364 (539)
....... . . -......+......+....+... + .+.+.....+.+..++..++.+++..+..+|.+++ .
T Consensus 302 ~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 370 (524)
T 2xut_A 302 LVLFALV-T-P--FWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L 370 (524)
T ss_dssp HHHHTTS-H-H--HHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred HHHHHHH-H-H--HHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence 0000000 0 0 00000000000001111122110 0 12334445555555666666666555555665444 5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCch
Q 009231 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 444 (539)
Q Consensus 365 ~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 444 (539)
+..+.+.+|+++.+++++++...+.. . +...+.+.+++++.+++.+++++...+..++++.+.+|++
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLM----------M---DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTT----------T---TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH----------h---cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 66777888888888887776554200 0 0001235667778889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 009231 445 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 522 (539)
Q Consensus 445 ~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 522 (539)
+||+++|++++..++|+.+|+.+.+.+.+..+ .+|.++ +.+ .....|++.+++.+++.++++...+++++++
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999988764321 122210 000 0122377777888888877777666655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=232.95 Aligned_cols=390 Identities=9% Similarity=-0.005 Sum_probs=251.0
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|+.+.......++..+..+...+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3445555556677777777666776655 5567 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----hhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 96 LGMVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 96 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++.+++++ +. +.+.++++|+++|++.+...++..++++|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 65 677899999999999999999999999999998 459
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhh
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (539)
++++++.+...++|.+++|.+++++.+..| |++.|++.++..++..++.+...++.+++.+..+. .+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 221 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------- 221 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh-----------
Confidence 999999999999999999999999888888 99999999887766655544444432221110000 00
Q ss_pred ccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-------------hhhhcc
Q 009231 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------------QASSMD 317 (539)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------q~~~~~ 317 (539)
.+.. ..+ ..+..+ ..+...++. ..+... ..+..|..+... ......
T Consensus 222 ~~~~----~~~-~~~~~~-~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 222 YKND----YPD-DYNEKA-EQELTAKQI---FMQYVL------------PNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp TCCC-------------------CCTHH---HHHHTS------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred hccc----ccc-cchhhh-hcccccccc---hHHHHH------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 000000 000000000 000000 000001110000 111111
Q ss_pred CCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 009231 318 RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAI 396 (539)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~-i~~~~~~~~~~~~~~~~~ 396 (539)
...+ .+......+... ..+...+...+...+.+|+.+ +++..+.++..+.+ ++++.+....
T Consensus 281 ~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------- 342 (451)
T 1pw4_A 281 EVKH----FALDKSSWAYFL-YEYAGIPGTLLCGWMSDKVFR-----GNRGATGVFFMTLVTIATIVYWMNP-------- 342 (451)
T ss_dssp TBSC----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HhcC----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHhc--------
Confidence 1111 222211111111 111112222223444455310 44556666655555 5544443221
Q ss_pred hcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q 009231 397 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDIT 475 (539)
Q Consensus 397 ~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g~~lg~~l~~~i~~~~ 475 (539)
+.+.+.+....++.|++.....+....++.+..|++.||+++|+++...++ |..+++.+.+.+.+..
T Consensus 343 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 343 ------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 124555666677888888888888889999999999999999999999999 9999999999877543
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 476 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
++...|++.+++.+++.+..+...++
T Consensus 411 ----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 411 ----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24677888888888777776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-23 Score=217.54 Aligned_cols=357 Identities=13% Similarity=0.060 Sum_probs=231.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
.+++++.+..+....++..+..+...+.++. +.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~ 98 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL 98 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence 3444555666666677777776655555554 6789999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHH---HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccc
Q 009231 92 FTCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (539)
Q Consensus 92 ~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (539)
++.+++.+++ +.+. +.+.++++|++.|+|.+...++..++++|.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------ 149 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------ 149 (438)
T ss_dssp HHHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------
T ss_pred HHHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------
Confidence 9999999988 5444 7888999999999999999999999999999984
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cccc-------------------------chhhhHHHHHHHHHHHHHHHh
Q 009231 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 169 ~~r~~~~~~~~~~~~lg~~~g~~i~~~l~-~~~g-------------------------~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+|++++++.+...++|..++|.+++++. +..+ |++.|++.+...++..+..+.
T Consensus 150 -~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 150 -SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999987 5554 999998777665554444433
Q ss_pred c-CCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCC
Q 009231 223 A-SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301 (539)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (539)
. .|+.+++++++++..+..+.+....++ ......-.......
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~----------- 271 (438)
T 3o7q_A 229 TKFPALQSDNHSDAKQGSFSASLSRLARI--------------------------RHWRWAVLAQFCYV----------- 271 (438)
T ss_dssp CCCCCCTTTCCCCSSTTSHHHHHHHHTTC--------------------------SHHHHHHHHHHHHH-----------
T ss_pred HcCCcccccccccccccchhhhHHHHHhC--------------------------hHHHHHHHHHHHHH-----------
Confidence 2 222111111111111111111111100 00000000000000
Q ss_pred CCCccchhHhhhhh-ccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 009231 302 SNPNSLCTVEQASS-MDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 380 (539)
Q Consensus 302 ~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~ 380 (539)
............. .....+ .+.......... ..+...+...+...+.+| .++++.+..+.++.+++
T Consensus 272 -~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~r-------~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 272 -GAQTACWSYLIRYAVEEIPG----MTAGFAANYLTG-TMVCFFIGRFTGTWLISR-------FAPHKVLAAYALIAMAL 338 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHSTT----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhccCC----cchhHHHHHHHH-HHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHH
Confidence 0000000000111 111111 122111111111 111111222223344444 66667888888888777
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHH
Q 009231 381 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 460 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig 460 (539)
.+...+.+ +.+ ....+++.+++.+...|..+.+..+..|++ +++++++.. ...+|
T Consensus 339 ~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 339 CLISAFAG----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHCC----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHHcC----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 76655442 222 334457788888888999999989999987 999999887 67799
Q ss_pred HHHHHHHHHHhhhhh
Q 009231 461 NLVASLIMNAVDDIT 475 (539)
Q Consensus 461 ~~lg~~l~~~i~~~~ 475 (539)
+.+++.+.+.+.+..
T Consensus 394 ~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=221.27 Aligned_cols=407 Identities=12% Similarity=0.032 Sum_probs=227.2
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccch
Q 009231 51 ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (539)
Q Consensus 51 s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (539)
+..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++........+ .......-..+.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhH
Confidence 446778999999999999999999999997 99999999999999999999864311100000 000000012378
Q ss_pred HHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc--------ccc
Q 009231 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGW 202 (539)
Q Consensus 131 ~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------~g~ 202 (539)
+.++++|+++|+|.|+..+..+++++|..|+ ++|++..++.+....+|..+++.++..+... ..|
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999 5599999999999999999999877665432 346
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhh
Q 009231 203 KVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL 282 (539)
Q Consensus 203 ~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (539)
++.+.+..+..++..+.. ...|+.+.--..+.+.++..+.+.....+..... ......+..+..++. . . + .
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-~--~-~ 270 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ---AVQEIKHSLDHGRKT-G-G--R-L 270 (491)
T ss_dssp HHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-T-T--H-H
T ss_pred HHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH---HHHHHHHHHHhhhhh-h-h--H-H
Confidence 666665554444333322 2222221110011222222333322211110000 000000000000000 0 0 0 0
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCccch---hHhhh----------hhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHH
Q 009231 283 NKACMAKHPEQDLTPDGRASNPNSLC---TVEQA----------SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRA 349 (539)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~q~----------~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~ 349 (539)
.. . ......... ..+|. .......+ ... ...........+...+...+
T Consensus 271 ---~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 271 ---LM-F----------GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----AST-DIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp ---HH-S----------CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----CCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HH-h----------cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----CCc-cchhhHHHHHHHHHHHHHHH
Confidence 00 0 000000000 00000 00000000 000 00111111111112222223
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHH-HHH
Q 009231 350 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA-MAF 428 (539)
Q Consensus 350 ~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g-~~~ 428 (539)
...+.+|+ ++++.+..+...++++.+.++.... .....+..+...++...+ ...
T Consensus 332 ~~~l~dr~-------Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 332 AIMTVDKF-------GRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh-------cCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHHHhH
Confidence 44556664 4446777777777777766655430 111122222222222222 233
Q ss_pred HhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 009231 429 NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 508 (539)
Q Consensus 429 ~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 508 (539)
..|..+.+..|..|++.|++++|+.+..+++++.+++.+.+.+.+....... .+....|++.+++++++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~----------~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH----------FHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH----------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHH
Confidence 4466677888999999999999999999999999999998876542210000 012356788899999999
Q ss_pred HHHHHHhhhcccCCCCc-CccCCCCC
Q 009231 509 LYYLACCKAYGPFKGRV-GTAFDDKD 533 (539)
Q Consensus 509 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 533 (539)
++.+++.+|+|+++.|| ++.+++++
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHheecCCCCCCHHHHHHHhCCCC
Confidence 99999999999999988 55555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=204.57 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
.+....++..+......+.++.+ .+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34456666777777677777765 678999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
.++++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHHH
Confidence 98877 78889999999999999999999999999999844 8999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
..++|..++|.+++++.++.+|++.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999988776655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=205.09 Aligned_cols=390 Identities=11% Similarity=0.013 Sum_probs=217.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..+......++..+++....++++.|+++++|+|+.++|++.+.+.++..++++++|+++||+ ||||++++++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5566666666777777888889999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 97 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+.... .++... ...+..++.+.+++.+...+...+...+..++.. ++++.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 33221 221100 0012334445555555444444444444443311 23566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
.++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++.++ ++++++. .+.
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~ 203 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS-SATVANA-------------VGA 203 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-SSCSSSS-------------SSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc-ccccccc-------------ccc
Confidence 6677777789999999999999876 589999987766543333322222111100 0000000 000
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-hhhhccCCCCCCeeecCcc--
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-QASSMDRHVTPNFEIPSGS-- 330 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~~~~~~~~~~~~-- 330 (539)
.......+... ..........+ ...... ....+. ...+ .........+ ........
T Consensus 204 ~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g 262 (417)
T 2cfq_A 204 NHSAFSLKLAL-------ELFRQPKLWFL--SLYVIG----------VSCTYD-VFDQQFANFFTSFFA-TGEQGTRVFG 262 (417)
T ss_dssp CCCCCCHHHHH-------HHTTCHHHHHH--HHHHHH----------HHHHHH-HHHHHHHHHHHHTSS-SHHHHTHHHH
T ss_pred ccccccHHHHH-------HHhcCCchhhH--HHHHHH----------HHHHHH-HHHHHHHHHHHHHHh-ccCCChhHHH
Confidence 00000000000 00000000000 000000 000000 0000 0001111110 00000111
Q ss_pred -hhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 009231 331 -FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 409 (539)
Q Consensus 331 -~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 409 (539)
...++.+. ..+......++.+| .++++.+..+.++.+++++...+.+
T Consensus 263 ~~~~~~~~~----~~~~~~~~g~l~dr-------~g~~~~l~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T 2cfq_A 263 YVTTMGELL----NASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH-------hcHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 11111111 11222233444555 4555677777777777655543321
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 009231 410 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 488 (539)
Q Consensus 410 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~ 488 (539)
+.+.++...++.+++.....+....+..+..|++.||+++++ ++..+++|+.++|.+.|.+.+..
T Consensus 311 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~------------- 376 (417)
T 2cfq_A 311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------------- 376 (417)
T ss_dssp -SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------------
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------------
Confidence 344455555666777777777778889999999999999999 58889999999999998776432
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009231 489 NKGHYDYYYWLLTALSMANFLYYLACCKAYG 519 (539)
Q Consensus 489 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 519 (539)
++...|.+.+++.+++.++.+...++++
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 2456677778787877776665454433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=136.33 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=149.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhc--cchHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~--Grk~~~~~~~~~~ 94 (539)
|.++..++..++..+.++++..+++.|+++.+|++..+++++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 556677778888889999999999999998899999999999999999999999999999999 6 8999888887766
Q ss_pred H-HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 95 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
. ++.++..+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5544444321 11456677777888998888888889999999998 45999
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhc
Q 009231 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 174 ~~~~~~~~~~l-g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
++++.+...++ |..++|.+.|++.++.||+..|++.++..+++.+..+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999888777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=128.25 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=137.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHH-hhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|.++..++..++....++++..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 556666667777888888889999999 8888899999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.++..+.. +... .+..++.+++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776544 3333 3344788899999999999999999886 2 45556
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~ 218 (539)
++.. ...+|..++|.+.|++.++.| ++..|++.++..++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999988 99999987665444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=129.62 Aligned_cols=168 Identities=8% Similarity=0.022 Sum_probs=126.7
Q ss_pred HHHHHHhhcchhhHHHHhhhhccC---ChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 009231 27 AFERMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (539)
+.....++.....++.|+.+.++. +..+.+...+...++..++.++.|+++||+ |||+++..+.++.+++.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556688888766653 345567777777778888999999999997 9999999888887777655553
Q ss_pred hhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH-HHHHH
Q 009231 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFV 182 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 182 (539)
.. +.+.+++...+.+++.+...+...++++|.+|+ +.|++++++ ++...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 32 445566666667777776677778899999998 568999888 47777
Q ss_pred HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
.+|..++|.++|++.++.|+...|.+.++..+++.++.+...+
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999988889999998888877777666554333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=121.95 Aligned_cols=186 Identities=10% Similarity=0.001 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHH-----HHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGCF 92 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-----~~~~ 92 (539)
......+..++....++.....++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555566667777888888999999998999878888888889999999999999999997 9986654 6766
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++..++........ .....+.+.+.+..++.+++.+...|...+++.|.+|++. |+
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------NS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------SS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------HH
Confidence 66666655554321000 0011245667777888999999999999999999999954 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
++.++++...++|..++|.+.+++.+ .++...|.+.+...+++.++.+...++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888865 467778888877777666666555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-08 Score=102.28 Aligned_cols=181 Identities=9% Similarity=0.055 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333333344444443333334444556678888888888888888889999999999999997 9999999999888888
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHH--HHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG--LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
.+.++....... .....++... ..+++ ....|....+.+|.+|. +.|+++.
T Consensus 356 ~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt-------~~R~~~~ 408 (491)
T 4gc0_A 356 MFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPN-------AIRGKAL 408 (491)
T ss_dssp HHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCT-------TTHHHHH
T ss_pred HHHHHHHHhccc-------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCH-------hHHHHHH
Confidence 777665431111 1122222222 22222 23456778899999999 4599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------cccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~------~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
++.+...++++.+++.+.+.+.+ ..++...|++.+.+.+++.+..++..|+
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999887776643 2456667888888777777766665554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-09 Score=110.44 Aligned_cols=163 Identities=8% Similarity=-0.033 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH-HH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~-~~ 95 (539)
|.++...+..++...++++...+++.|+++++|+++.+++.+.....++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3455666677778888888999999999988999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHH--HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 96 LGMV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 96 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
.+.. ...... ..+.+.+++..++.+++.+...|...+++.|..| ++ |++
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGT 326 (375)
T ss_dssp TSSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHH
T ss_pred HHHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cch
Confidence 2222 111111 0145556677888999999999999999999987 33 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
+.++.+...++|..++|.+.+.+.+..+|...+.+.+.
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999887788877766433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-05 Score=83.05 Aligned_cols=122 Identities=16% Similarity=0.002 Sum_probs=91.6
Q ss_pred HHhhhhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 009231 352 PLASKIKGKPCQL-SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 430 (539)
Q Consensus 352 ~l~~k~~~~~~~~-~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~ 430 (539)
++.+++.+| . ++++.+.++.++.+++.+...+.. .+.+.++...++.|++.+...
T Consensus 72 ~~~G~l~dr---~~g~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 72 LLGGWIADR---FFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp HHHHHHHTT---SSCSHHHHHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccc
Confidence 334455555 6 777889999999888877765431 146667777889999999999
Q ss_pred hhhhhhhhccCCchhhhHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009231 431 IGQTEFYYTELPKSMSSIASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 507 (539)
Q Consensus 431 ~~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~ 507 (539)
|....++.+..|++.|++++++ ++...++|..+|+.+.+.+.+.. ++...|++.+++.+++
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------GAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHHHH
Confidence 9999999999999999887777 88888999999998877665322 2466777777776666
Q ss_pred HHHHHH
Q 009231 508 FLYYLA 513 (539)
Q Consensus 508 ~~~~~~ 513 (539)
.+.++.
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 539 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.27 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.22 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.9e-25 Score=229.84 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=137.9
Q ss_pred chhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 009231 36 FTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPAC 115 (539)
Q Consensus 36 ~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (539)
....+.++++ ++|+|.+|.|++.+++.++..++.+++|+++||+ |||+++.+++++.+++.++++++.....
T Consensus 43 ~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------ 114 (447)
T d1pw4a_ 43 NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------ 114 (447)
T ss_dssp SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------
T ss_pred HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh------
Confidence 3455666776 6899999999999999999999999999999997 9999999999999999988886542222
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 116 DQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVY 195 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~ 195 (539)
+.+.+++.|++.|++.|...++..++++|.+|+ ++|++++++.+.+.++|..++|.+++.
T Consensus 115 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 115 -------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp -------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhh
Confidence 567799999999999999999999999999998 459999999999999999999988887
Q ss_pred hccc-ccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 196 IQDN-LGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 196 l~~~-~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
+... .+|++.|++.+...++..++.+...++
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 6654 479999999887766665555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.9e-24 Score=215.98 Aligned_cols=398 Identities=11% Similarity=0.040 Sum_probs=240.7
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..|.+....++..+++....++++.|+++++|+|.++.|++.+++.++..++.++.|+++||+ ||||+++++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677777788888888888889999999999999999999999999999999999999999997 999999999999888
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
+..+.....+.+. .....++.+.+.+.+.+...+.......+..++++ +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH-----HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh-----hhhHHHHH
Confidence 8888776551111 11223344444444444444444443333333322 33555666
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCC
Q 009231 177 WYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLP 256 (539)
Q Consensus 177 ~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (539)
........+..++|.+++.+.+. +|+..+........+..+..+...++.+..++++++. ......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 207 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV-------------GANHSA 207 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH-------------HSCCCC
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh-------------hhhccc
Confidence 77777889999999988888764 4555555555444444444443333322211111000 000000
Q ss_pred CCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh---hhhhccCCCCCCeeecCcchhh
Q 009231 257 TQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE---QASSMDRHVTPNFEIPSGSFNI 333 (539)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---q~~~~~~~~~~~~~~~~~~~~~ 333 (539)
. ......+ ................ ........ ......... .......
T Consensus 208 ~-~~~~~~~-------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 258 (417)
T d1pv7a_ 208 F-SLKLALE-------LFRQPKLWFLSLYVIG---------------VSCTYDVFDQQFANFFTSFF------ATGEQGT 258 (417)
T ss_dssp C-CHHHHHH-------HTTSSHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHTTSS------SCHHHHH
T ss_pred c-ccccccc-------ccccccccchhhhhHH---------------HHHHHHhhhccccccccccc------cccccch
Confidence 0 0000000 0000000000000000 00000000 000011110 0000111
Q ss_pred hhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHH
Q 009231 334 FAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAM 413 (539)
Q Consensus 334 ~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 413 (539)
...........+.......+.+++.+| .++++.+.++..+.+++.+...+.+ +.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 313 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINR---IGGKNALLLAGTIMSVRIIGSSFAT----------------------SAL 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHTCC----------------------CHH
T ss_pred hhhcccccccccccccchhhhhhhhcc---cccccchhhhHHHHHHhhhcccccc----------------------ccc
Confidence 111111111112222233344444444 6777788888888888877766553 566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcc
Q 009231 414 WQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLS-GAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGH 492 (539)
Q Consensus 414 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 492 (539)
.+....++.+++.+...+....++.+.+|++.||+++|+. ++...+|..+++.+.|.+.+..+
T Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g---------------- 377 (417)
T d1pv7a_ 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG---------------- 377 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
Confidence 7777788899999999999999999999999999999985 56778999999999998876553
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 009231 493 YDYYYWLLTALSMANFLYYLACCKAYGPFKG 523 (539)
Q Consensus 493 ~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~ 523 (539)
+...|++.+++.++..++.++..++.++...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 378 FQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 4667888888888887777777766655444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.2e-11 Score=124.03 Aligned_cols=179 Identities=16% Similarity=0.081 Sum_probs=139.7
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|.++......++.....++...+++.|+.+.+|++..+.+.......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 5566677778888888899999999999999999999999999999999999999999999997 887655444443333
Q ss_pred HHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHH
Q 009231 97 GMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFS 176 (539)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~ 176 (539)
...........+ ..+.+...+..++.|++.+...+...++..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 322222211011 12566677777788888888888889999999998 45899999
Q ss_pred HHHHHHHH-HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHH
Q 009231 177 WYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFF 221 (539)
Q Consensus 177 ~~~~~~~l-g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~ 221 (539)
+.+...++ |..++|.+.|++.+++||+..|++.+...+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99888887 5677899999999999999999887776665555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=7.7e-12 Score=124.83 Aligned_cols=149 Identities=8% Similarity=0.021 Sum_probs=126.3
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCC
Q 009231 45 CREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCES 124 (539)
Q Consensus 45 ~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (539)
.++.+.+....+.......++..++..+.+++.||+ |||+++.++.++..++.++..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------- 310 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------- 310 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------------
Confidence 344566777888888888999999999999999997 999999999999888888877654
Q ss_pred CCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHH-HHHHHHHHHHHHHhhhhcccccch
Q 009231 125 ATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYY-VFVSASSIVAVTCIVYIQDNLGWK 203 (539)
Q Consensus 125 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~~g~~i~~~l~~~~g~~ 203 (539)
+.+.+++..++.+++.+...+...+++.|.+|+ +.|++.++..+ ....+|..++|.+.|++.++.|++
T Consensus 311 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 311 ----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 677788888899999999999999999999999 45899999765 456799999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcC
Q 009231 204 VGFGVPAVIMLLSALSFFLAS 224 (539)
Q Consensus 204 ~~f~i~~~~~l~~~~~~~~~~ 224 (539)
..|++.+...++..++.++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999998887776666554443
|