Citrus Sinensis ID: 009268
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| O23596 | 544 | Putative glycerol-3-phosp | yes | no | 0.973 | 0.963 | 0.687 | 0.0 | |
| Q9C5L3 | 523 | Putative glycerol-3-phosp | no | no | 0.912 | 0.938 | 0.578 | 1e-161 | |
| Q9SA71 | 510 | Putative glycerol-3-phosp | no | no | 0.864 | 0.911 | 0.563 | 1e-152 | |
| Q9SL56 | 493 | Putative glycerol-3-phosp | no | no | 0.875 | 0.955 | 0.539 | 1e-148 | |
| Q9SB41 | 504 | Putative glycerol-3-phosp | no | no | 0.856 | 0.914 | 0.535 | 1e-145 | |
| Q58CV5 | 491 | Sugar phosphate exchanger | no | no | 0.853 | 0.934 | 0.485 | 1e-119 | |
| Q9WU81 | 501 | Sugar phosphate exchanger | yes | no | 0.879 | 0.944 | 0.478 | 1e-118 | |
| Q7SY29 | 494 | Sugar phosphate exchanger | yes | no | 0.869 | 0.947 | 0.463 | 1e-115 | |
| Q8TED4 | 501 | Sugar phosphate exchanger | yes | no | 0.879 | 0.944 | 0.468 | 1e-115 | |
| P57057 | 533 | Glycerol-3-phosphate tran | no | no | 0.895 | 0.904 | 0.449 | 1e-108 |
| >sp|O23596|GLPT4_ARATH Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/556 (68%), Positives = 443/556 (79%), Gaps = 32/556 (5%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA NS R+TPPGI L+R++RG++WS T+RY IL ITFIAYACYHASRKPSSIVKSVL
Sbjct: 1 MAMNSK--RKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVL 58
Query: 61 CPDPLKGPKKK-------PWPIGEFFVRQEFVGLDRNV--STAKGWDPFNGTHGTSKLGE 111
PD P ++ PWP+G FV++E +D + +KGW+PFNG GTS+LGE
Sbjct: 59 HPDSSTKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGE 118
Query: 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIM 171
ID+AFLACYS+GM+VAGHLGD+LDLRLFLT GM+GSG FVGLFGMGYF +IHAF F+L+M
Sbjct: 119 IDVAFLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVM 178
Query: 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGW 231
QM AGLFQATGWPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL+YGWGW
Sbjct: 179 QMAAGLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGW 238
Query: 232 SFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVEN 291
SFI PG + +GG++VYLFLAAYPEDVGFP N +S + + ++ + +
Sbjct: 239 SFIAPGFVMSLGGVLVYLFLAAYPEDVGFPDINS---NSGKFIKRKRDVEEEEEEVEEDL 295
Query: 292 NSGIRYGSG----------SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341
+ + ++ SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYL
Sbjct: 296 GTDVEGDGEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYL 355
Query: 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLL 401
SQT IGGEY+SVKTAGNLSTLFDVGGI GGI+ GYISDK KARATTAA FMYAAIP+ML+
Sbjct: 356 SQTTIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLV 415
Query: 402 YRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDG 461
Y +YG VSQTVNI+LMMVAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDG
Sbjct: 416 YHSYGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDG 475
Query: 462 TGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTTNG 521
TGS GAALGPLLTGFLST GW AVF ML+VGAL AGLLL+RLVIAEI EK+ G
Sbjct: 476 TGSAGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKL--------G 527
Query: 522 WQNNEAPATQPLLRDR 537
+ + E PA++PLL DR
Sbjct: 528 YVDEEVPASEPLLTDR 543
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5L3|GLPT1_ARATH Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 296/512 (57%), Positives = 379/512 (74%), Gaps = 21/512 (4%)
Query: 8 VRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPD-PLK 66
+ + P GI + +I+G S + Y+ I+L++TF+AYA YHA+RK +SIVKS L P P
Sbjct: 11 MEKKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIVKSALDPQSPDT 70
Query: 67 GPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFV 126
G + +R F +V GW PFNG GT LGEID+AFLA Y+ GM+
Sbjct: 71 G-------LNSLLLR--FTSFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFLAVYAFGMYF 121
Query: 127 AGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186
AGHLGD ++LR+FLT GM+G+G+F LFG+GY+ +IH+F ++LIMQM+AGLFQ++GWPSV
Sbjct: 122 AGHLGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGLFQSSGWPSV 181
Query: 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGII 246
VAV+GNWF K+KRGLIMG+WNAHTSVGNI+GSL+AA++L YGWGWSF++PG IV+ G++
Sbjct: 182 VAVVGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPGVIIVVIGLV 241
Query: 247 VYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVG 306
Y FL PE+VG SSE++ N + + + ++ + +VG
Sbjct: 242 NYAFLPVSPENVGAERDEVLDSSSEKIGNSVNEPLLLSSSDSETDDK--------KRAVG 293
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
+A IPGV PFA CLFFAKLVAYTFLYWLPFY+S T I GEYLS +TAGNLST+FDVG
Sbjct: 294 FIEAWRIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFDVG 353
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
G+ GGI+AGYISD++ ARA TAA+FMY +IP++ YR+YG VS N LM + G+ VNG
Sbjct: 354 GVVGGIMAGYISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNG 413
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQG-WDAV 485
PYALITTAVSADLGTHSS++G+SRALATVTAIIDGTGSVGAA+GPLLTG++S++G W AV
Sbjct: 414 PYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWTAV 473
Query: 486 FIMLMVGALIAGLLLSRLVIAEITEKI--RRP 515
F MLM A +AGLLL+RLV+AE+ EKI RP
Sbjct: 474 FTMLMGAAFVAGLLLTRLVMAEVAEKIAESRP 505
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA71|GLPT3_ARATH Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/499 (56%), Positives = 354/499 (70%), Gaps = 34/499 (6%)
Query: 12 PPGILLIRKIR-GKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKK 70
PPGI + + R S Y+ ++ ++TFIAY +HA+RKP+SIVK L P
Sbjct: 16 PPGIHFLERFRRSGKLSFKQYQAMVFVLTFIAYIAFHATRKPNSIVKGTLSEQP------ 69
Query: 71 KPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHL 130
F G D+ GW PF+G GT+ LG+IDLAFL+ Y+VGMFVAGHL
Sbjct: 70 ----------TGHFKGADKG-----GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHL 114
Query: 131 GDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVI 190
GD LDLR FLT GMVG+G+ LFG+ ++ +IHAF ++L +Q +AG FQ+ GWP VVAV+
Sbjct: 115 GDRLDLRTFLTIGMVGTGVCTALFGVAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVL 174
Query: 191 GNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLF 250
GNWF K++RG+IMGVW+AHTS+GNI G+L+A +L +GWGWSF+ P I GI+VYLF
Sbjct: 175 GNWFDKKRRGVIMGVWSAHTSLGNIIGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLF 234
Query: 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSG-SRTSVGLFQ 309
L P V +ER ++ +S M+ G T E+ R +G R +VG
Sbjct: 235 LPVNPHAV----------EAERDGSEVDSTMRLGDTI-TESFLSSRTSTGFDRRAVGFLA 283
Query: 310 ACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIF 369
A IPGV PFAFCLFF KLV+YTFLYWLPFY+SQTEIGGE LS +T+GNLSTLFDVGG+
Sbjct: 284 AWKIPGVAPFAFCLFFTKLVSYTFLYWLPFYVSQTEIGGEQLSQETSGNLSTLFDVGGVV 343
Query: 370 GGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429
GGI+AGY SD+L RA TA F+Y IP++ LYR YG VS T+NI+LM VAGLFVNGPYA
Sbjct: 344 GGILAGYFSDQLDGRAITAGGFIYLTIPALFLYRIYGHVSMTINIILMFVAGLFVNGPYA 403
Query: 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIML 489
LITTAV+ADLGTH S++G++RALATVTAIIDGTGSVGAA+GP+LTG+++ WDAVF ML
Sbjct: 404 LITTAVAADLGTHKSLKGNARALATVTAIIDGTGSVGAAIGPVLTGYIAAISWDAVFYML 463
Query: 490 MVGALIAGLLLSRLVIAEI 508
M ALI+GLLL+ L+I E+
Sbjct: 464 MTAALISGLLLTTLIIEEV 482
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SL56|GLPT5_ARATH Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/497 (53%), Positives = 350/497 (70%), Gaps = 26/497 (5%)
Query: 13 PGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKP 72
P L + + T ++ ++L+ITF AYA +HASRKP SIVKSVL P L
Sbjct: 10 PAFSLFPNLNTPHKTFTFHQILVLIITFTAYASFHASRKPPSIVKSVLGPPSLNSS---- 65
Query: 73 WPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGD 132
S GW PFNGT GT +LGE+DLAFL+ Y++GM+ AGHLGD
Sbjct: 66 -------------------SIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGD 106
Query: 133 TLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGN 192
+DLR FL GM+GSGI +FG+GY++++H GFY+ +Q+V GLFQ+ GWP VV+V+GN
Sbjct: 107 RIDLRYFLVFGMMGSGILTLVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGN 166
Query: 193 WFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLA 252
W GK KRGLIMG+WN+HTSVGNI GS++A+SVLD+GWGWSF+LPG +++ G++V++FL
Sbjct: 167 WCGKEKRGLIMGLWNSHTSVGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLV 226
Query: 253 AYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL 312
P D+GF I L + E ++K + E + S ++G +A
Sbjct: 227 VSPNDLGFEELGKEIEIEMSLGENVEESLRKHEA---EGAVLLENVDDSSFAIGFLEAWR 283
Query: 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGI 372
+PGV P+AFCLFF+KLVAYTFLYWLP+YL T + G LS KTAG LST+FDVGG+ GGI
Sbjct: 284 LPGVAPYAFCLFFSKLVAYTFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGI 343
Query: 373 IAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALIT 432
AG+ISDK+KARA T+ TF+ +IP++++YR YGSVS +NIVLM ++GL VNGPYALIT
Sbjct: 344 SAGFISDKIKARALTSITFLALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALIT 403
Query: 433 TAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVG 492
TAV+ADLGT S++G+ RALATVTAIIDGTGSVGAALGPLL G++S++GW++VF ML+V
Sbjct: 404 TAVAADLGTQDSIKGNGRALATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVS 463
Query: 493 ALIAGLLLSRLVIAEIT 509
AGL L RL +EI
Sbjct: 464 IFFAGLFLVRLAKSEIN 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SB41|GLPT2_ARATH Putative glycerol-3-phosphate transporter 2 OS=Arabidopsis thaliana GN=At4g25220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/502 (53%), Positives = 355/502 (70%), Gaps = 41/502 (8%)
Query: 9 RQTPPGILLIRKI-RGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKG 67
P GI + K R S Y+ ++ ++TF+AY +HA+RKP+SIVK L ++G
Sbjct: 13 ETKPWGIQFLEKFKRSGRLSFKQYQALVFILTFVAYIAFHAARKPNSIVKGTLSASTIEG 72
Query: 68 PKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVA 127
GW PF+G GT+ LG+IDLAFL+ Y+VGMFVA
Sbjct: 73 ----------------------------GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVA 104
Query: 128 GHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187
GHLGD LDLR FLT GM+G+G+F LFG+ ++ + H+F ++L +Q++AGLFQ+ GWP +V
Sbjct: 105 GHLGDRLDLRTFLTIGMIGTGLFTALFGVAFWANFHSFYYFLAVQVMAGLFQSIGWPCIV 164
Query: 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIV 247
AV+GNWF K++RG+IMGVW+AHTS+GNI+GSL+A+ +L YGWGWSF+ P + GI+V
Sbjct: 165 AVLGNWFDKKRRGMIMGVWSAHTSLGNIAGSLIASGLLRYGWGWSFLGPAFLMTFLGIVV 224
Query: 248 YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSG-SRTSVG 306
YLFL P P +ER + +S M+ G T E+ R +G R +VG
Sbjct: 225 YLFLPVNP----------PTVEAERDGTEIDSTMRLGDTI-TESLLESRMSTGFDRKAVG 273
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
A IPGV PFAFCLFF KLV+YTFLYWLPFY+S IGGEYLS +T+GNLST+FDVG
Sbjct: 274 FMAAWKIPGVAPFAFCLFFTKLVSYTFLYWLPFYVSHNMIGGEYLSEETSGNLSTIFDVG 333
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
G+ GG++AGYISD+L RA TAA FMY AIP++ LYR +G +S T+N++LM +G+F+ G
Sbjct: 334 GVVGGVLAGYISDQLNGRAITAAGFMYLAIPALFLYRVFGHISLTINVILMFTSGVFIIG 393
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
P+ALITTAVSADLGTH S++G++RALATV+AIIDGTGSVGAA+GP+LTG++S WDAVF
Sbjct: 394 PFALITTAVSADLGTHKSLKGNARALATVSAIIDGTGSVGAAIGPVLTGYISAISWDAVF 453
Query: 487 IMLMVGALIAGLLLSRLVIAEI 508
MLM ALI+GLLL++L+IAE+
Sbjct: 454 YMLMTAALISGLLLTKLIIAEV 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q58CV5|SPX2_BOVIN Sugar phosphate exchanger 2 OS=Bos taurus GN=SLC37A2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/484 (48%), Positives = 313/484 (64%), Gaps = 25/484 (5%)
Query: 31 YRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPKKKPWPIGEFFVRQEFVGL 87
YR ILLITF+ Y CYH SRKP S+VKS L C + ++ P+
Sbjct: 11 YRAFILLITFLIYTCYHMSRKPISVVKSRLHHNCSEVIQ-------PVNSTH-------- 55
Query: 88 DRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGS 147
N +T W PF+ ++ LG +D AFL Y++GMF++G G+ L LR +LT GM+ S
Sbjct: 56 SLNDTTWCNWAPFDKSNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLTAGMLLS 115
Query: 148 GIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN 207
G+F LFG+GYF +IH +++++Q+ GL Q TGWP+VV+ +GNWFGK KRGLIMG+WN
Sbjct: 116 GLFTSLFGLGYFWNIHVLWYFVLVQIFNGLVQTTGWPAVVSCVGNWFGKGKRGLIMGIWN 175
Query: 208 AHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF--PYAND 265
+HTSVGNI GSLLA +D WG SF++PG + GII + FL YPEDV P +
Sbjct: 176 SHTSVGNILGSLLAGVWVDQQWGLSFVVPGVITAIMGIITFFFLIEYPEDVDCSPPQHHG 235
Query: 266 PIPSSERLPNDEESHMQKGKTAAVENN-SGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF 324
S+ P D + K +++E+ + + S +++ F A IPGV+ F+ CL
Sbjct: 236 NPEESQDQPEDPANGPSCNKESSLESAVTCSKEASAQPSAISFFGALRIPGVVEFSLCLL 295
Query: 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR 384
FAKLV+YTFLYWLP Y+S + + K AG+LSTLFDVGGI GGI+AG +SD + R
Sbjct: 296 FAKLVSYTFLYWLPLYISNV----VHFTAKEAGDLSTLFDVGGIIGGILAGLVSDYINGR 351
Query: 385 ATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSS 444
ATT + A P M LY G ++IV++++ G VNGPYALITTAVSADLGTH S
Sbjct: 352 ATTCCVMLILAAPMMFLYNHVGQRGIGISIVMLLICGALVNGPYALITTAVSADLGTHKS 411
Query: 445 VRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLV 504
++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF ML+ ++A LLL RLV
Sbjct: 412 LKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLCRLV 471
Query: 505 IAEI 508
EI
Sbjct: 472 YKEI 475
|
Bos taurus (taxid: 9913) |
| >sp|Q9WU81|SPX2_MOUSE Sugar phosphate exchanger 2 OS=Mus musculus GN=Slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/502 (47%), Positives = 314/502 (62%), Gaps = 29/502 (5%)
Query: 13 PGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPK 69
PG+ +R W +R ILL+TF+ YACYH SRKP SIVKS L C + ++
Sbjct: 7 PGVWFLRAFSRDSW----FRGFILLLTFLIYACYHMSRKPISIVKSRLHQNCSEMVR--- 59
Query: 70 KKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGH 129
P+ + D N +T W PF+ LG +D AFL Y++GMF++G
Sbjct: 60 ----PVNDTH--------DLNDTTWCSWSPFDKDDYKELLGAVDNAFLVAYAIGMFISGI 107
Query: 130 LGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189
G+ L LR +L+ GMV SG+F LFG+GYF +IH +++++Q+ GL Q TGWPSVV
Sbjct: 108 FGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSVVTC 167
Query: 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYL 249
+GNWFGK KRG IMG+WN+HTSVGNI GSL+A ++ WG SFI+PG + G+I +L
Sbjct: 168 VGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQHWGLSFIVPGIITAIMGVITFL 227
Query: 250 FLAAYPEDVGF--PYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSR-TSVG 306
FL YPEDV P +D + P D + + + V+ + G ++
Sbjct: 228 FLIEYPEDVDCTPPRHHDDPEKEQDNPEDPVNSPYSSRESNVDIAASSSKEQGPEPEAIS 287
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
A IPGVI F+ CL FAKLV+YTFLYWLP Y+ + S K AG+LSTLFDVG
Sbjct: 288 FLGALRIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNV----AHFSAKEAGDLSTLFDVG 343
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
GI GGI+AG ISD +RATT + A P M LY G T +IV++++ G+ VNG
Sbjct: 344 GIIGGIMAGLISDYTNSRATTCCIMLILAAPMMFLYNYIGQNGITSSIVMLIICGVLVNG 403
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTH S++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF
Sbjct: 404 PYALITTAVSADLGTHESLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVF 463
Query: 487 IMLMVGALIAGLLLSRLVIAEI 508
ML+ ++A LLL RLV EI
Sbjct: 464 YMLISADVLACLLLCRLVYKEI 485
|
Mus musculus (taxid: 10090) |
| >sp|Q7SY29|SPX2_DANRE Sugar phosphate exchanger 2 OS=Danio rerio GN=slc37a2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 237/511 (46%), Positives = 306/511 (59%), Gaps = 43/511 (8%)
Query: 8 VRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDP 64
++ PGI LI W YR+ IL +TF+ Y YH SRKP SIVKS L C +
Sbjct: 1 MKSLAPGIKLITSFSRDSW----YRFSILFLTFVFYTSYHLSRKPISIVKSQLHRNCSN- 55
Query: 65 LKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGM 124
V + + N T W PF+G + + G +D FL Y+VGM
Sbjct: 56 --------------VVHPANLNITDN-DTWCDWVPFDGKNYQNLFGVLDNCFLVAYAVGM 100
Query: 125 FVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184
F +G G+ L LR +L+TGM+ SG+F LFG+G++ IH+ +Y ++Q + GL Q TGWP
Sbjct: 101 FFSGIFGERLPLRYYLSTGMLLSGLFTALFGLGFYWQIHSLWYYCLVQALNGLVQTTGWP 160
Query: 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGG 244
+VVA +GNWFGK KRG IMGVWN+HTSVGNI GSL+A + WG SFI+PG I G
Sbjct: 161 AVVACVGNWFGKGKRGFIMGVWNSHTSVGNILGSLIAGVYVSSAWGLSFIVPGIIIASTG 220
Query: 245 IIVYLFLAAYPEDVGF--PYANDPIPSSERLPN---DEESHMQKGKTAA--VENNSGIRY 297
+I +LFL PEDV P ++ + L N +EE TA VE++S
Sbjct: 221 VICFLFLVERPEDVNCTAPQHHERVEEEPLLRNSSTNEEIFNSHTSTAVEPVEDHS---- 276
Query: 298 GSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAG 357
++ A IPGV+ F+ CL FAKLV+YTFLYWLP Y++ + K AG
Sbjct: 277 -----EAISFCGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANV----AHFDPKKAG 327
Query: 358 NLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLM 417
+LSTLFDVGGI GGI+AG +SD RA+T + A P + LY G + ++
Sbjct: 328 DLSTLFDVGGILGGIVAGLVSDYTGGRASTCCAMLIIAAPMLFLYNKIGQNGLPTTVGML 387
Query: 418 MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477
+ G VNGPYALITTAVSADLGTH +RG+SRAL+TVTAIIDGTGS+GAA+GPLL G +
Sbjct: 388 LWCGALVNGPYALITTAVSADLGTHECLRGNSRALSTVTAIIDGTGSIGAAVGPLLAGLI 447
Query: 478 STQGWDAVFIMLMVGALIAGLLLSRLVIAEI 508
S GW+ VF ML+ ++A LLLSRLV EI
Sbjct: 448 SPTGWNNVFYMLIAADVLACLLLSRLVYKEI 478
|
Danio rerio (taxid: 7955) |
| >sp|Q8TED4|SPX2_HUMAN Sugar phosphate exchanger 2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/502 (46%), Positives = 312/502 (62%), Gaps = 29/502 (5%)
Query: 13 PGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPK 69
PG+ R W +R +ILL+TF+ YACYH SRKP SIVKS L C + +K
Sbjct: 7 PGVWFFRAFSRDSW----FRGLILLLTFLIYACYHMSRKPISIVKSRLHQNCSEQIK--- 59
Query: 70 KKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGH 129
PI + N + W PF+ + LG +D AFL Y++GMF++G
Sbjct: 60 ----PINDTH--------SLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGV 107
Query: 130 LGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189
G+ L LR +L+ GM+ SG+F LFG+GYF +IH +++++Q+ GL Q TGWPSVV
Sbjct: 108 FGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTC 167
Query: 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYL 249
+GNWFGK KRG IMG+WN+HTSVGNI GSL+A ++ WG SFI+PG + G+I +L
Sbjct: 168 VGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVITFL 227
Query: 250 FLAAYPEDVGF--PYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSR-TSVG 306
FL +PEDV P + ++ P D + + + +E + G ++
Sbjct: 228 FLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAIS 287
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
F A IPGV+ F+ CL FAKLV+YTFLYWLP Y++ + S K AG+LSTLFDVG
Sbjct: 288 FFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANV----AHFSAKEAGDLSTLFDVG 343
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
GI GGI+AG +SD RATT + A P M LY G +IV++++ G VNG
Sbjct: 344 GIIGGIVAGLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGLVNG 403
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTH S++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF
Sbjct: 404 PYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVF 463
Query: 487 IMLMVGALIAGLLLSRLVIAEI 508
ML+ ++A LLL RLV EI
Sbjct: 464 YMLISADVLACLLLCRLVYKEI 485
|
Homo sapiens (taxid: 9606) |
| >sp|P57057|GLPT_HUMAN Glycerol-3-phosphate transporter OS=Homo sapiens GN=SLC37A1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 240/534 (44%), Positives = 316/534 (59%), Gaps = 52/534 (9%)
Query: 10 QTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPK 69
+ P GI I W YR I ++TF+ YA +H SRKP SIVK L
Sbjct: 3 RLPAGIRFIISFSRDQW----YRAFIFILTFLLYASFHLSRKPISIVKGEL--------H 50
Query: 70 KKPWPIGEFFVRQEFVGLDRNVSTAK-----------GWDPFNGTHGTSKLGEIDLAFLA 118
K E VR F +R +A GW PF+ + LG +D +FL
Sbjct: 51 KYCTAWDEADVR--FSSQNRKSGSAAPHQLPDNETDCGWAPFDKNNYQQLLGALDYSFLC 108
Query: 119 CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLF 178
Y+VGM+++G +G+ L +R +LT GM+ SG F LFG+GYF +IH+FGFY++ Q++ GL
Sbjct: 109 AYAVGMYLSGIIGERLPIRYYLTFGMLASGAFTALFGLGYFYNIHSFGFYVVTQVINGLV 168
Query: 179 QATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGA 238
Q TGWPSVV +GNWFGK +RGLIMGVWN+HTSVGNI GSL+A + WG SF++PGA
Sbjct: 169 QTTGWPSVVTCLGNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWGLSFVVPGA 228
Query: 239 SIVMGGIIVYLFLAAYPEDVGFP---------YAN---------DPIPSSERLPNDEESH 280
+ GI+ +LFL +P DV Y N + S + P D E
Sbjct: 229 IVAAMGIVCFLFLIEHPNDVRCSSTLVTHSKGYENGTNRLRLQKQILKSEKNKPLDPEMQ 288
Query: 281 ---MQKGKTAAVENNSGIRYGSGSR--TSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLY 335
+ GK + N+ I G G ++ A IPGVI F+ CL FAKLV+YTFL+
Sbjct: 289 CLLLSDGKGSIHPNHVVILPGDGGSGTAAISFTGALKIPGVIEFSLCLLFAKLVSYTFLF 348
Query: 336 WLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395
WLP Y++ ++L K AG LSTLFDVGGIFGGI+AG ISD+L+ RA+T + A
Sbjct: 349 WLPLYITNV----DHLDAKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLA 404
Query: 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATV 455
P++ ++ T + I +++++G V+GPY LITTAVSADLGTH S++G++ AL+TV
Sbjct: 405 APTLYIFSTVSKMGLEATIAMLLLSGALVSGPYTLITTAVSADLGTHKSLKGNAHALSTV 464
Query: 456 TAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEIT 509
TAIIDGTGSVGAALGPLL G LS GW VF MLM A L L RL+ E++
Sbjct: 465 TAIIDGTGSVGAALGPLLAGLLSPSGWSNVFYMLMFADACALLFLIRLIHKELS 518
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 359497147 | 525 | PREDICTED: putative glycerol-3-phosphate | 0.955 | 0.979 | 0.768 | 0.0 | |
| 296088906 | 507 | unnamed protein product [Vitis vinifera] | 0.938 | 0.996 | 0.743 | 0.0 | |
| 89257661 | 527 | transporter, putative [Brassica oleracea | 0.921 | 0.941 | 0.743 | 0.0 | |
| 255581978 | 521 | Glycerol-3-phosphate transporter, putati | 0.920 | 0.950 | 0.738 | 0.0 | |
| 89257580 | 539 | transporter, putative [Brassica oleracea | 0.933 | 0.931 | 0.735 | 0.0 | |
| 30684088 | 544 | MFS transporter, OPA family, solute carr | 0.973 | 0.963 | 0.687 | 0.0 | |
| 356513769 | 496 | PREDICTED: putative glycerol-3-phosphate | 0.895 | 0.971 | 0.718 | 0.0 | |
| 2245113 | 534 | glycerol-3-phosphate permease like prote | 0.942 | 0.949 | 0.702 | 0.0 | |
| 224138712 | 485 | predicted protein [Populus trichocarpa] | 0.862 | 0.956 | 0.738 | 0.0 | |
| 356565380 | 504 | PREDICTED: putative glycerol-3-phosphate | 0.910 | 0.972 | 0.710 | 0.0 |
| >gi|359497147|ref|XP_003635437.1| PREDICTED: putative glycerol-3-phosphate transporter 4-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/515 (76%), Positives = 441/515 (85%), Gaps = 1/515 (0%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA S+TVR TPPGILLI+ IRGK+W TYRY++LLITFIAYACYHASRKPSSIVKSV+
Sbjct: 1 MARRSETVRGTPPGILLIKSIRGKEWRQGTYRYVVLLITFIAYACYHASRKPSSIVKSVM 60
Query: 61 CPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACY 120
PDP K PWP+GE FV+++++ N + +GW PFNGT GTSKLGEID+AFLACY
Sbjct: 61 DPDPKMIIGKDPWPVGEIFVKEKWLDSGINRTRKEGWAPFNGTDGTSKLGEIDVAFLACY 120
Query: 121 SVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQA 180
S+GM+VAGHLGDTLDLRLFLT+GM+GSG FV LFGMGYF DIH F FYL+MQM+AGLFQA
Sbjct: 121 SLGMYVAGHLGDTLDLRLFLTSGMIGSGSFVVLFGMGYFWDIHVFWFYLLMQMIAGLFQA 180
Query: 181 TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASI 240
TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL+YGWGWSFILPG I
Sbjct: 181 TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFILPGFLI 240
Query: 241 VMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSG 300
++GGI+V+LFL AYPED+GFP + S DEE+ +++G + N R GS
Sbjct: 241 ILGGIMVFLFLPAYPEDIGFPCPHSSTSSVYTDSTDEEAQVERGNSEQRVTNVP-RNGSV 299
Query: 301 SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLS 360
SR SVGL QACLIPGVIPFA CLFFAKLVAYTFLYWLPFY+SQT IGGEY+SVK+AGNLS
Sbjct: 300 SRRSVGLVQACLIPGVIPFALCLFFAKLVAYTFLYWLPFYISQTAIGGEYMSVKSAGNLS 359
Query: 361 TLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVA 420
TLFDVGGI GGI AGYISDKL ARA AA+FMYAAIPSMLLYR YGS+SQT+NIVLMM A
Sbjct: 360 TLFDVGGIVGGIFAGYISDKLNARAIIAASFMYAAIPSMLLYRLYGSISQTLNIVLMMTA 419
Query: 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480
GLFVNGPYALITTAVSADLGTH S+RGDSRALATVTAIIDGTGSVGAALGPLLTGFLST+
Sbjct: 420 GLFVNGPYALITTAVSADLGTHKSLRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTK 479
Query: 481 GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRP 515
GW+AVF ML+ ALIAGLLLSRLV EITEK+ +P
Sbjct: 480 GWNAVFTMLIACALIAGLLLSRLVFDEITEKMCKP 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088906|emb|CBI38455.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/537 (74%), Positives = 441/537 (82%), Gaps = 32/537 (5%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA S+TVR TPPGILLI+ IRGK+W TYRY++LLITFIAYACYHASRKPSSIVKSV+
Sbjct: 1 MARRSETVRGTPPGILLIKSIRGKEWRQGTYRYVVLLITFIAYACYHASRKPSSIVKSVM 60
Query: 61 CPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACY 120
PDP K PWP GW PFNGT GTSKLGEID+AFLACY
Sbjct: 61 DPDPKMIIGKDPWP---------------------GWAPFNGTDGTSKLGEIDVAFLACY 99
Query: 121 SVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQA 180
S+GM+VAGHLGDTLDLRLFLT+GM+GSG FV LFGMGYF DIH F FYL+MQM+AGLFQA
Sbjct: 100 SLGMYVAGHLGDTLDLRLFLTSGMIGSGSFVVLFGMGYFWDIHVFWFYLLMQMIAGLFQA 159
Query: 181 TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASI 240
TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL+YGWGWSFILPG I
Sbjct: 160 TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFILPGFLI 219
Query: 241 VMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSG 300
++GGI+V+LFL AYPED+G Y + DEE+ +++G + N R GS
Sbjct: 220 ILGGIMVFLFLPAYPEDIGV-YTDS---------TDEEAQVERGNSEQRVTNVP-RNGSV 268
Query: 301 SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLS 360
SR SVGL QACLIPGVIPFA CLFFAKLVAYTFLYWLPFY+SQT IGGEY+SVK+AGNLS
Sbjct: 269 SRRSVGLVQACLIPGVIPFALCLFFAKLVAYTFLYWLPFYISQTAIGGEYMSVKSAGNLS 328
Query: 361 TLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVA 420
TLFDVGGI GGI AGYISDKL ARA AA+FMYAAIPSMLLYR YGS+SQT+NIVLMM A
Sbjct: 329 TLFDVGGIVGGIFAGYISDKLNARAIIAASFMYAAIPSMLLYRLYGSISQTLNIVLMMTA 388
Query: 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480
GLFVNGPYALITTAVSADLGTH S+RGDSRALATVTAIIDGTGSVGAALGPLLTGFLST+
Sbjct: 389 GLFVNGPYALITTAVSADLGTHKSLRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTK 448
Query: 481 GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTTNGWQNNEAPATQPLLRDR 537
GW+AVF ML+ ALIAGLLLSRLV EITEK+ +P ++ Q+ APA+QPLLRD+
Sbjct: 449 GWNAVFTMLIACALIAGLLLSRLVFDEITEKMCKPRPLSSEEQSFAAPASQPLLRDQ 505
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89257661|gb|ABD65148.1| transporter, putative [Brassica oleracea] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/514 (74%), Positives = 434/514 (84%), Gaps = 18/514 (3%)
Query: 9 RQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGP 68
R+TPPG+LL+R+IRG++WS T+RY+ILLITFIAYACYHASRKPSSIVKSVL P+P P
Sbjct: 7 RKTPPGVLLLRRIRGRNWSPKTFRYVILLITFIAYACYHASRKPSSIVKSVLHPEPSTKP 66
Query: 69 ------KKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSV 122
++PWP+G FV++E D N +KGW+PFNG GTS+LGEID+AFLACYS+
Sbjct: 67 PQAHIINERPWPLGNVFVKEE---TDAN-RESKGWEPFNGKGGTSRLGEIDVAFLACYSL 122
Query: 123 GMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATG 182
GM+VAGHLGDTLDLRLFLT GM+GSG FVGLFGMGYF ++HAF F+L+MQM AGLFQATG
Sbjct: 123 GMYVAGHLGDTLDLRLFLTWGMIGSGFFVGLFGMGYFWNVHAFWFFLVMQMAAGLFQATG 182
Query: 183 WPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVM 242
WPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL YGWGWSFI PG + +
Sbjct: 183 WPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLQYGWGWSFIAPGFVMSL 242
Query: 243 GGIIVYLFLAAYPEDVGFPYANDP----IPSSERLPNDEESHMQKGKTAAVENNSGIRYG 298
GG++VYLFLAAYPEDVGFP N I + + +EES + + SG RY
Sbjct: 243 GGVLVYLFLAAYPEDVGFPDINSNSGKFIKRNRDIEEEEESVVADVEREG--EGSGFRYE 300
Query: 299 SGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGN 358
+ + SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYLSQT IGGEY+SVKTAGN
Sbjct: 301 N--KRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTTIGGEYMSVKTAGN 358
Query: 359 LSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMM 418
LSTLFDVGGI GGI+AGYISDK KARATTAATFMYAAIP+ML+Y +YG VSQTVNIVLMM
Sbjct: 359 LSTLFDVGGIVGGILAGYISDKFKARATTAATFMYAAIPAMLVYHSYGGVSQTVNIVLMM 418
Query: 419 VAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478
VAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDGTGS GAALGPLLTGFLS
Sbjct: 419 VAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAALGPLLTGFLS 478
Query: 479 TQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKI 512
T GW+AVF ML+VGAL AGLLL+RLVIAEI EK+
Sbjct: 479 TLGWEAVFYMLVVGALCAGLLLTRLVIAEIREKL 512
|
Source: Brassica oleracea Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581978|ref|XP_002531787.1| Glycerol-3-phosphate transporter, putative [Ricinus communis] gi|223528580|gb|EEF30601.1| Glycerol-3-phosphate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/520 (73%), Positives = 435/520 (83%), Gaps = 25/520 (4%)
Query: 9 RQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGP 68
R+TPPGILLIR+IR AY YHASRKPSSIVKSVL P+P K
Sbjct: 8 RRTPPGILLIRRIR-------------------AYTTYHASRKPSSIVKSVLDPEPKKAS 48
Query: 69 KKK-PWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVA 127
PWPIG F+++EFV + R+ + KGW PFNG GTSKLGEID+AFLACYS+GM+VA
Sbjct: 49 GDGYPWPIGNVFIKEEFV-MGRHGN--KGWHPFNGPDGTSKLGEIDVAFLACYSLGMYVA 105
Query: 128 GHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187
GHLGDTLDLRLFLT+GM+GSGIFVGLFGMGYF +IH F FYL+MQM+AGLFQATGWPSVV
Sbjct: 106 GHLGDTLDLRLFLTSGMIGSGIFVGLFGMGYFWNIHVFWFYLLMQMLAGLFQATGWPSVV 165
Query: 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIV 247
AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPG IVMGGI+V
Sbjct: 166 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGGFIVMGGILV 225
Query: 248 YLFLAAYPEDVGFPYANDPIPSS-ERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVG 306
+LFLAAYPEDVGFP+ N ++ + +P+D E+ K +T ENN R GS R VG
Sbjct: 226 FLFLAAYPEDVGFPFINASTTATVDAVPSDMEAQTPK-QTTEQENNDIARSGSTFRKGVG 284
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
L +ACLIPGVIPFA CLFF+KLVAYTFLYWLPFYLSQTEIGGEY+SVK+AGNLSTLFDVG
Sbjct: 285 LLEACLIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTEIGGEYMSVKSAGNLSTLFDVG 344
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
GI GGI+AGYISDKL+ARA TA +FMYAAIP M LYR YGSVS+T+N++LMM+AGLF+NG
Sbjct: 345 GIVGGILAGYISDKLRARAITATSFMYAAIPCMYLYRQYGSVSKTMNVILMMIAGLFING 404
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTHSS+RGDSRALATVTAIIDGTGS+GAALGPL TGFLST GWDAVF
Sbjct: 405 PYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLFTGFLSTMGWDAVF 464
Query: 487 IMLMVGALIAGLLLSRLVIAEITEKIRRPVTTTNGWQNNE 526
+MLMVGAL+AGLLLSR V EI+EK + + +++G Q+NE
Sbjct: 465 MMLMVGALVAGLLLSRQVATEISEKTSKIMPSSSGLQSNE 504
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89257580|gb|ABD65069.1| transporter, putative [Brassica oleracea] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/515 (73%), Positives = 432/515 (83%), Gaps = 13/515 (2%)
Query: 9 RQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGP 68
R+TPPGILL+R++RG++WS T+RY ILLITFIAYACYHASRKPSSIVKSVL P+P P
Sbjct: 5 RKTPPGILLLRRVRGRNWSPKTFRYAILLITFIAYACYHASRKPSSIVKSVLHPEPSTKP 64
Query: 69 KK------KPWPIGEFFVRQEFVG-LDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYS 121
+ +PWP+G FV++E L R S KGW+PFNG GTS+LGEID+AFLACYS
Sbjct: 65 PQQEHINMRPWPLGNVFVKEEETDVLLRRGSANKGWEPFNGKGGTSRLGEIDVAFLACYS 124
Query: 122 VGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQAT 181
+GM+VAGHLGD+LDLRLFLT GM+GSG FVGLFGMGYF +IHAF F+L+MQM AGLFQAT
Sbjct: 125 IGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVMQMAAGLFQAT 184
Query: 182 GWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIV 241
GWPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL YGWGWSFI PG +
Sbjct: 185 GWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLQYGWGWSFIAPGLVMS 244
Query: 242 MGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSG- 300
+GG++VYLFLAAYPEDVGFP N S + + + + ++ + G GSG
Sbjct: 245 LGGVLVYLFLAAYPEDVGFPDINSN--SGKFIKSRRDIEEEEEVEEVDVEDEGESSGSGQ 302
Query: 301 ---SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAG 357
++ SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYLSQT IGGEY+SVKTAG
Sbjct: 303 GYENKRSVGLLQACMIPGVIPFAMCLFFSKLVAYTFLYWLPFYLSQTTIGGEYMSVKTAG 362
Query: 358 NLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLM 417
NLSTLFDVGGI GGI+AGYISDK KARATTAATFMYAAIP+ML+Y +YG VSQTVN+VLM
Sbjct: 363 NLSTLFDVGGIVGGILAGYISDKFKARATTAATFMYAAIPAMLVYHSYGGVSQTVNVVLM 422
Query: 418 MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477
MVAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDGTGS GAALGPLLTGFL
Sbjct: 423 MVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAALGPLLTGFL 482
Query: 478 STQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKI 512
ST GW+AVF ML+VGAL AGLLL+RLVIAEI EK+
Sbjct: 483 STLGWEAVFYMLVVGALCAGLLLTRLVIAEIREKL 517
|
Source: Brassica oleracea Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684088|ref|NP_193488.2| MFS transporter, OPA family, solute carrier family 37 [Arabidopsis thaliana] gi|317376203|sp|O23596.2|GLPT4_ARATH RecName: Full=Putative glycerol-3-phosphate transporter 4; Short=G-3-P transporter 4; AltName: Full=Glycerol-3-phosphate permease 4; Short=AtG3Pp4; Short=G-3-P permease 4 gi|332658509|gb|AEE83909.1| MFS transporter, OPA family, solute carrier family 37 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/556 (68%), Positives = 443/556 (79%), Gaps = 32/556 (5%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA NS R+TPPGI L+R++RG++WS T+RY IL ITFIAYACYHASRKPSSIVKSVL
Sbjct: 1 MAMNSK--RKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVL 58
Query: 61 CPDPLKGPKKK-------PWPIGEFFVRQEFVGLDRNV--STAKGWDPFNGTHGTSKLGE 111
PD P ++ PWP+G FV++E +D + +KGW+PFNG GTS+LGE
Sbjct: 59 HPDSSTKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGE 118
Query: 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIM 171
ID+AFLACYS+GM+VAGHLGD+LDLRLFLT GM+GSG FVGLFGMGYF +IHAF F+L+M
Sbjct: 119 IDVAFLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVM 178
Query: 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGW 231
QM AGLFQATGWPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL+YGWGW
Sbjct: 179 QMAAGLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGW 238
Query: 232 SFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVEN 291
SFI PG + +GG++VYLFLAAYPEDVGFP N +S + + ++ + +
Sbjct: 239 SFIAPGFVMSLGGVLVYLFLAAYPEDVGFPDINS---NSGKFIKRKRDVEEEEEEVEEDL 295
Query: 292 NSGIRYGSG----------SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341
+ + ++ SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYL
Sbjct: 296 GTDVEGDGEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYL 355
Query: 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLL 401
SQT IGGEY+SVKTAGNLSTLFDVGGI GGI+ GYISDK KARATTAA FMYAAIP+ML+
Sbjct: 356 SQTTIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLV 415
Query: 402 YRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDG 461
Y +YG VSQTVNI+LMMVAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDG
Sbjct: 416 YHSYGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDG 475
Query: 462 TGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTTNG 521
TGS GAALGPLLTGFLST GW AVF ML+VGAL AGLLL+RLVIAEI EK+ G
Sbjct: 476 TGSAGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKL--------G 527
Query: 522 WQNNEAPATQPLLRDR 537
+ + E PA++PLL DR
Sbjct: 528 YVDEEVPASEPLLTDR 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513769|ref|XP_003525582.1| PREDICTED: putative glycerol-3-phosphate transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/525 (71%), Positives = 427/525 (81%), Gaps = 43/525 (8%)
Query: 12 PPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKK 71
PPGILLIR GK W+L T+RY++LL TF+AYACYHASRKP+ IVKSVLCP+
Sbjct: 13 PPGILLIR---GKQWNLQTHRYMVLLTTFVAYACYHASRKPTGIVKSVLCPE-------- 61
Query: 72 PWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLG 131
+ T++GW PFNG GTSKLGEID+AFLACYS+GM+VAGHLG
Sbjct: 62 ------------------HKGTSQGWSPFNGHDGTSKLGEIDVAFLACYSIGMYVAGHLG 103
Query: 132 DTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG 191
DTLDLRLFL TGMVGSGIFV LFGMGYF +IH+F FYL MQM+AG+FQATGWPSVVAVIG
Sbjct: 104 DTLDLRLFLATGMVGSGIFVSLFGMGYFWNIHSFLFYLSMQMIAGMFQATGWPSVVAVIG 163
Query: 192 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFL 251
NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL+YGWGWSF++PGA IV GG++VYLFL
Sbjct: 164 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFVVPGALIVGGGVVVYLFL 223
Query: 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQAC 311
A YPEDVGF S DEE+ + K V R GS +R SVGL +AC
Sbjct: 224 APYPEDVGF--------SCVHGGGDEEAQVNDEKGGGVPT----REGSVNRKSVGLVEAC 271
Query: 312 LIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGG 371
+IPGVIPFA CLFFAKLVAYTFLYWLPFYL+QTEIGG+Y+SVK+AGNLSTLFDVGGI GG
Sbjct: 272 MIPGVIPFALCLFFAKLVAYTFLYWLPFYLTQTEIGGKYISVKSAGNLSTLFDVGGIVGG 331
Query: 372 IIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALI 431
I+AGY+SDKL ARA TAA+FMYAAIPSMLLYR YGSVS NI LMMV GLFVNGPYALI
Sbjct: 332 ILAGYVSDKLNARAITAASFMYAAIPSMLLYRHYGSVSMNANIGLMMVTGLFVNGPYALI 391
Query: 432 TTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMV 491
TTAVSADLGTHSS++GDSRALATVTAIIDGTGSVGAALGPLLTGF+ST+GW+ VF+ML++
Sbjct: 392 TTAVSADLGTHSSLKGDSRALATVTAIIDGTGSVGAALGPLLTGFISTRGWNEVFMMLVL 451
Query: 492 GALIAGLLLSRLVIAEITEKIRRPVTTTNGWQNNEAPATQPLLRD 536
GA IAGLLLSRL+IAEI E+ +P+++ G QN EA A+QPLL +
Sbjct: 452 GAFIAGLLLSRLIIAEIAERSGKPLSS--GQQNPEATASQPLLEE 494
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2245113|emb|CAB10535.1| glycerol-3-phosphate permease like protein [Arabidopsis thaliana] gi|7268507|emb|CAB78758.1| glycerol-3-phosphate permease like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/531 (70%), Positives = 430/531 (80%), Gaps = 24/531 (4%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA NS R+TPPGI L+R++RG++WS T+RY IL ITFIAYACYHASRKPSSIVKSVL
Sbjct: 1 MAMNSK--RKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVL 58
Query: 61 CPDPLKGPKKK-------PWPIGEFFVRQEFVGLDRNV--STAKGWDPFNGTHGTSKLGE 111
PD P ++ PWP+G FV++E +D + +KGW+PFNG GTS+LGE
Sbjct: 59 HPDSSTKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGE 118
Query: 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIM 171
ID+AFLACYS+GM+VAGHLGD+LDLRLFLT GM+GSG FVGLFGMGYF +IHAF F+L+M
Sbjct: 119 IDVAFLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVM 178
Query: 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGW 231
QM AGLFQATGWPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL+YGWGW
Sbjct: 179 QMAAGLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGW 238
Query: 232 SFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVEN 291
SFI PG + +GG++VYLFLAAYPEDVGFP N +S + + ++ + +
Sbjct: 239 SFIAPGFVMSLGGVLVYLFLAAYPEDVGFPDINS---NSGKFIKRKRDVEEEEEEVEEDL 295
Query: 292 NSGIRYGSG----------SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341
+ + ++ SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYL
Sbjct: 296 GTDVEGDGEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYL 355
Query: 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLL 401
SQT IGGEY+SVKTAGNLSTLFDVGGI GGI+ GYISDK KARATTAA FMYAAIP+ML+
Sbjct: 356 SQTTIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLV 415
Query: 402 YRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDG 461
Y +YG VSQTVNI+LMMVAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDG
Sbjct: 416 YHSYGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDG 475
Query: 462 TGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKI 512
TGS GAALGPLLTGFLST GW AVF ML+VGAL AGLLL+RLVIAEI EK+
Sbjct: 476 TGSAGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKL 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138712|ref|XP_002326671.1| predicted protein [Populus trichocarpa] gi|222833993|gb|EEE72470.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/505 (73%), Positives = 418/505 (82%), Gaps = 41/505 (8%)
Query: 8 VRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKG 67
+R+ PPGI LIRKIRGKD SL T+RY++LL+TFIAY YHASRKPSSIVKS
Sbjct: 1 MRKIPPGIWLIRKIRGKDCSLKTHRYMVLLVTFIAYTSYHASRKPSSIVKS--------- 51
Query: 68 PKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVA 127
W+PFNG GT KLG ID+AFLACYS+GMF A
Sbjct: 52 -----------------------------WEPFNGKDGTEKLGLIDVAFLACYSLGMFGA 82
Query: 128 GHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187
GHLGDTLDLRLFLT+GM+GSGIFVGLFGMGYF +IH FGFYL+MQMVAGLFQATGWPSVV
Sbjct: 83 GHLGDTLDLRLFLTSGMIGSGIFVGLFGMGYFWNIHVFGFYLVMQMVAGLFQATGWPSVV 142
Query: 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIV 247
AVIGNWFGKRKRGLIMG+WNAHTSVGNI+GSL+AASVL+YGWGWSFI PG I + GI+V
Sbjct: 143 AVIGNWFGKRKRGLIMGIWNAHTSVGNITGSLIAASVLEYGWGWSFIAPGTFIAISGILV 202
Query: 248 YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSG-IRYGSGSRTSVG 306
+LFLAAYPED+GFP N P +E +P D E+ Q T VE S IR SG+R SVG
Sbjct: 203 FLFLAAYPEDIGFPCPNGPATRAEAVPCDVEAQTQNEGT--VEGKSAPIRDRSGARRSVG 260
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVG 366
L +ACLIPGVIPF+FCLFF+KLVAYTFLYWLPFYLSQTEIGGEY+SVK+AGNLSTLFDVG
Sbjct: 261 LLEACLIPGVIPFSFCLFFSKLVAYTFLYWLPFYLSQTEIGGEYMSVKSAGNLSTLFDVG 320
Query: 367 GIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
GI GGI+AG+ISDKL+ARA TAA+FMYAAIPSMLLYR YG++S+TVNIVLMM+AGLF+NG
Sbjct: 321 GIVGGILAGHISDKLRARAITAASFMYAAIPSMLLYRLYGNLSRTVNIVLMMIAGLFING 380
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTHSS+RGDSRALATVTAIIDGTGS+GAALGPLLTGFLST+GWD VF
Sbjct: 381 PYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLLTGFLSTKGWDTVF 440
Query: 487 IMLMVGALIAGLLLSRLVIAEITEK 511
+MLM+GALIAGLLLSR V+ EI EK
Sbjct: 441 VMLMLGALIAGLLLSRQVVVEINEK 465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565380|ref|XP_003550919.1| PREDICTED: putative glycerol-3-phosphate transporter 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/528 (71%), Positives = 428/528 (81%), Gaps = 38/528 (7%)
Query: 12 PPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKK 71
PPG+LLIR GK W+L TYRY++LL TFIAYACYHASRKP+ IVKSVLCP+
Sbjct: 13 PPGLLLIR---GKQWNLQTYRYMVLLTTFIAYACYHASRKPTGIVKSVLCPE-------- 61
Query: 72 PWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLG 131
+ T +GW PFNG GTSKLGEID+AFLACYS+GM+VAGHLG
Sbjct: 62 ------------------HKGTNQGWSPFNGHDGTSKLGEIDVAFLACYSMGMYVAGHLG 103
Query: 132 DTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG 191
D+LDLRLFLTTGMVGSGIFV LFGMGYF ++H+F FYL MQM+AG+FQATGWPSVVAVIG
Sbjct: 104 DSLDLRLFLTTGMVGSGIFVSLFGMGYFWNMHSFLFYLSMQMIAGMFQATGWPSVVAVIG 163
Query: 192 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFL 251
NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL+YGWGWSF++PG IV+GG++VYLFL
Sbjct: 164 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLEYGWGWSFVVPGVVIVLGGVLVYLFL 223
Query: 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSG--IRYGSGSRTSVGLFQ 309
A YPEDVGF + DEE+ + K R GS +R SVGL +
Sbjct: 224 APYPEDVGFSCVH-----GGGGGGDEEAQVNGVKKGGGGGGVAPPTREGSVNRKSVGLVE 278
Query: 310 ACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIF 369
AC+IPGVIPFA CLFFAKLVAYTFLYWLPFYL+QTEIGG+Y+SVK+AGNLS LFDVGGIF
Sbjct: 279 ACMIPGVIPFALCLFFAKLVAYTFLYWLPFYLTQTEIGGKYISVKSAGNLSALFDVGGIF 338
Query: 370 GGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429
GGI+AGY+SDKL ARA TAA+FMYAAIPSMLLYR YGSVS NI LMMV+GLFVNGPYA
Sbjct: 339 GGILAGYVSDKLNARAITAASFMYAAIPSMLLYRHYGSVSMNANIGLMMVSGLFVNGPYA 398
Query: 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIML 489
LITTAVSADLGTHSS++GDSRALATVTAIIDGTGSVGAALGPLLTGF+S++GWD VF+ML
Sbjct: 399 LITTAVSADLGTHSSLKGDSRALATVTAIIDGTGSVGAALGPLLTGFISSRGWDEVFMML 458
Query: 490 MVGALIAGLLLSRLVIAEITEKIRRPVTTTNGWQNNEAPATQPLLRDR 537
++GA IAGLLLSRL+IAEI E+ +P+++ G QN EA A+QPLL +R
Sbjct: 459 VLGAFIAGLLLSRLIIAEIAERSGKPLSS--GQQNPEATASQPLLEER 504
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TAIR|locus:2129176 | 544 | G3Pp4 "AT4G17550" [Arabidopsis | 0.979 | 0.968 | 0.688 | 4.8e-197 | |
| TAIR|locus:2099585 | 523 | G3Pp1 "AT3G47420" [Arabidopsis | 0.908 | 0.934 | 0.563 | 8.1e-147 | |
| TAIR|locus:2028125 | 510 | G3Pp3 "AT1G30560" [Arabidopsis | 0.747 | 0.788 | 0.596 | 1.7e-139 | |
| TAIR|locus:2056457 | 493 | G3Pp5 "AT2G13100" [Arabidopsis | 0.769 | 0.839 | 0.561 | 5.7e-139 | |
| TAIR|locus:2122664 | 504 | G3Pp2 "AT4G25220" [Arabidopsis | 0.758 | 0.809 | 0.574 | 3.5e-137 | |
| UNIPROTKB|E1BZ06 | 496 | SLC37A1 "Uncharacterized prote | 0.847 | 0.919 | 0.457 | 2.1e-113 | |
| UNIPROTKB|Q58CV5 | 491 | SLC37A2 "Sugar phosphate excha | 0.853 | 0.934 | 0.471 | 3.8e-110 | |
| RGD|1564160 | 501 | Slc37a2 "solute carrier family | 0.879 | 0.944 | 0.462 | 3.8e-110 | |
| UNIPROTKB|F1S792 | 497 | SLC37A2 "Uncharacterized prote | 0.871 | 0.943 | 0.460 | 6.1e-110 | |
| UNIPROTKB|E1B9Q0 | 533 | SLC37A1 "Uncharacterized prote | 0.451 | 0.455 | 0.464 | 1.3e-109 |
| TAIR|locus:2129176 G3Pp4 "AT4G17550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1908 (676.7 bits), Expect = 4.8e-197, P = 4.8e-197
Identities = 381/553 (68%), Positives = 437/553 (79%)
Query: 1 MAGNSDTVRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL 60
MA NS R+TPPGI L+R++RG++WS T+RY IL ITFIAYACYHASRKPSSIVKSVL
Sbjct: 1 MAMNSK--RKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVL 58
Query: 61 CPDPLKGPKKK-------PWPIGEFFVRQEFVGLDRNV--STAKGWDPFNGTHGTSKLGE 111
PD P ++ PWP+G FV++E +D + +KGW+PFNG GTS+LGE
Sbjct: 59 HPDSSTKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGE 118
Query: 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIM 171
ID+AFLACYS+GM+VAGHLGD+LDLRLFLT GM+GSG FVGLFGMGYF +IHAF F+L+M
Sbjct: 119 IDVAFLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVM 178
Query: 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGW 231
QM AGLFQATGWPSVVAV+GNWFGKRKRGLIMG+WNAHTSVGNI GSL+AA VL+YGWGW
Sbjct: 179 QMAAGLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGW 238
Query: 232 SFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND---PIPSSERLPNDEESHMQKGKTAA 288
SFI PG + +GG++VYLFLAAYPEDVGFP N +R +EE +++
Sbjct: 239 SFIAPGFVMSLGGVLVYLFLAAYPEDVGFPDINSNSGKFIKRKRDVEEEEEEVEEDLGTD 298
Query: 289 VENNSGIRYGSGS----RTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344
VE + GSGS + SVGL QAC+IPGVIPFA CLFF+KLVAYTFLYWLPFYLSQT
Sbjct: 299 VEGDGEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQT 358
Query: 345 EIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKLKARATTAATFMYAAIPSMLLYRT 404
IGGEY+SVKTAGNLSTLFDV SDK KARATTAA FMYAAIP+ML+Y +
Sbjct: 359 TIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLVYHS 418
Query: 405 YGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS 464
YG VSQTVNI+LMMVAGLFVNGPYALITTAVSADLGTH S++GDSRALATVTAIIDGTGS
Sbjct: 419 YGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGS 478
Query: 465 VGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTTNGWQN 524
GAALGPLLTGFLST GW AVF ML+VGAL AGLLL+RLVIAEI EK+ G+ +
Sbjct: 479 AGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKL--------GYVD 530
Query: 525 NEAPATQPLLRDR 537
E PA++PLL DR
Sbjct: 531 EEVPASEPLLTDR 543
|
|
| TAIR|locus:2099585 G3Pp1 "AT3G47420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
Identities = 285/506 (56%), Positives = 367/506 (72%)
Query: 8 VRQTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKG 67
+ + P GI + +I+G S + Y+ I+L++TF+AYA YHA+RK +SIVKS L DP +
Sbjct: 11 MEKKPIGIRFLERIKGSKLSYSAYQAIVLIVTFLAYASYHAARKTTSIVKSAL--DP-QS 67
Query: 68 PKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVA 127
P + +R F +V GW PFNG GT LGEID+AFLA Y+ GM+ A
Sbjct: 68 PDTG---LNSLLLR--FTSFGSSVKEEGGWAPFNGPDGTVLLGEIDVAFLAVYAFGMYFA 122
Query: 128 GHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187
GHLGD ++LR+FLT GM+G+G+F LFG+GY+ +IH+F ++LIMQM+AGLFQ++GWPSVV
Sbjct: 123 GHLGDRMNLRIFLTVGMIGTGLFTSLFGVGYWGNIHSFYYFLIMQMLAGLFQSSGWPSVV 182
Query: 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIV 247
AV+GNWF K+KRGLIMG+WNAHTSVGNI+GSL+AA++L YGWGWSF++PG IV+ G++
Sbjct: 183 AVVGNWFNKKKRGLIMGIWNAHTSVGNITGSLIAAAMLRYGWGWSFVVPGVIIVVIGLVN 242
Query: 248 YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGL 307
Y FL PE+VG SSE++ N + + + ++ + +VG
Sbjct: 243 YAFLPVSPENVGAERDEVLDSSSEKIGNSVNEPLLLSSSDSETDDK--------KRAVGF 294
Query: 308 FQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXX 367
+A IPGV PFA CLFFAKLVAYTFLYWLPFY+S T I GEYLS +TAGNLST+FDV
Sbjct: 295 IEAWRIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIEGEYLSDETAGNLSTMFDVGG 354
Query: 368 XXXXXXXXXXSDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGP 427
SD++ ARA TAA+FMY +IP++ YR+YG VS N LM + G+ VNGP
Sbjct: 355 VVGGIMAGYISDRIGARAITAASFMYCSIPALFFYRSYGHVSLLANASLMFLTGMLVNGP 414
Query: 428 YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQG-WDAVF 486
YALITTAVSADLGTHSS++G+SRALATVTAIIDGTGSVGAA+GPLLTG++S++G W AVF
Sbjct: 415 YALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAVGPLLTGYISSRGSWTAVF 474
Query: 487 IMLMVGALIAGLLLSRLVIAEITEKI 512
MLM A +AGLLL+RLV+AE+ EKI
Sbjct: 475 TMLMGAAFVAGLLLTRLVMAEVAEKI 500
|
|
| TAIR|locus:2028125 G3Pp3 "AT1G30560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1259 (448.2 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 247/414 (59%), Positives = 307/414 (74%)
Query: 96 GWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFG 155
GW PF+G GT+ LG+IDLAFL+ Y+VGMFVAGHLGD LDLR FLT GMVG+G+ LFG
Sbjct: 80 GWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMVGTGVCTALFG 139
Query: 156 MGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNI 215
+ ++ +IHAF ++L +Q +AG FQ+ GWP VVAV+GNWF K++RG+IMGVW+AHTS+GNI
Sbjct: 140 VAFWANIHAFYYFLAIQTLAGWFQSIGWPCVVAVLGNWFDKKRRGVIMGVWSAHTSLGNI 199
Query: 216 SGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275
G+L+A +L +GWGWSF+ P I GI+VYLFL P V +ER +
Sbjct: 200 IGTLIATGLLKFGWGWSFVGPALLITFLGIVVYLFLPVNPHAV----------EAERDGS 249
Query: 276 DEESHMQKGKTAAVENNSGIRYGSG-SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL 334
+ +S M+ G T E+ R +G R +VG A IPGV PFAFCLFF KLV+YTFL
Sbjct: 250 EVDSTMRLGDTIT-ESFLSSRTSTGFDRRAVGFLAAWKIPGVAPFAFCLFFTKLVSYTFL 308
Query: 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKLKARATTAATFMYA 394
YWLPFY+SQTEIGGE LS +T+GNLSTLFDV SD+L RA TA F+Y
Sbjct: 309 YWLPFYVSQTEIGGEQLSQETSGNLSTLFDVGGVVGGILAGYFSDQLDGRAITAGGFIYL 368
Query: 395 AIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALAT 454
IP++ LYR YG VS T+NI+LM VAGLFVNGPYALITTAV+ADLGTH S++G++RALAT
Sbjct: 369 TIPALFLYRIYGHVSMTINIILMFVAGLFVNGPYALITTAVAADLGTHKSLKGNARALAT 428
Query: 455 VTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEI 508
VTAIIDGTGSVGAA+GP+LTG+++ WDAVF MLM ALI+GLLL+ L+I E+
Sbjct: 429 VTAIIDGTGSVGAAIGPVLTGYIAAISWDAVFYMLMTAALISGLLLTTLIIEEV 482
|
|
| TAIR|locus:2056457 G3Pp5 "AT2G13100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
Identities = 234/417 (56%), Positives = 306/417 (73%)
Query: 92 STAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFV 151
S GW PFNGT GT +LGE+DLAFL+ Y++GM+ AGHLGD +DLR FL GM+GSGI
Sbjct: 66 SIDNGWAPFNGTQGTKRLGELDLAFLSSYALGMYFAGHLGDRIDLRYFLVFGMMGSGILT 125
Query: 152 GLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTS 211
+FG+GY++++H GFY+ +Q+V GLFQ+ GWP VV+V+GNW GK KRGLIMG+WN+HTS
Sbjct: 126 LVFGLGYWMNVHTLGFYMSVQIVCGLFQSIGWPCVVSVVGNWCGKEKRGLIMGLWNSHTS 185
Query: 212 VGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSE 271
VGNI GS++A+SVLD+GWGWSF+LPG +++ G++V++FL P D+GF I
Sbjct: 186 VGNILGSVIASSVLDFGWGWSFVLPGVLVLVSGVVVFMFLVVSPNDLGFEELGKEIEIEM 245
Query: 272 RLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAY 331
L + E ++K + + S ++G +A +PGV P+AFCLFF+KLVAY
Sbjct: 246 SLGENVEESLRKHEAEGAVLLENV---DDSSFAIGFLEAWRLPGVAPYAFCLFFSKLVAY 302
Query: 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKLKARATTAATF 391
TFLYWLP+YL T + G LS KTAG LST+FDV SDK+KARA T+ TF
Sbjct: 303 TFLYWLPYYLRHTAVAGVNLSHKTAGILSTVFDVGGVLGGISAGFISDKIKARALTSITF 362
Query: 392 MYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRA 451
+ +IP++++YR YGSVS +NIVLM ++GL VNGPYALITTAV+ADLGT S++G+ RA
Sbjct: 363 LALSIPALIMYRVYGSVSMFINIVLMFISGLLVNGPYALITTAVAADLGTQDSIKGNGRA 422
Query: 452 LATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEI 508
LATVTAIIDGTGSVGAALGPLL G++S++GW++VF ML+V AGL L RL +EI
Sbjct: 423 LATVTAIIDGTGSVGAALGPLLAGYISSRGWNSVFFMLIVSIFFAGLFLVRLAKSEI 479
|
|
| TAIR|locus:2122664 G3Pp2 "AT4G25220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1253 (446.1 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 242/421 (57%), Positives = 315/421 (74%)
Query: 90 NVSTAKG-WDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSG 148
+ ST +G W PF+G GT+ LG+IDLAFL+ Y+VGMFVAGHLGD LDLR FLT GM+G+G
Sbjct: 66 SASTIEGGWAPFDGPDGTALLGQIDLAFLSVYAVGMFVAGHLGDRLDLRTFLTIGMIGTG 125
Query: 149 IFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNA 208
+F LFG+ ++ + H+F ++L +Q++AGLFQ+ GWP +VAV+GNWF K++RG+IMGVW+A
Sbjct: 126 LFTALFGVAFWANFHSFYYFLAVQVMAGLFQSIGWPCIVAVLGNWFDKKRRGMIMGVWSA 185
Query: 209 HTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIP 268
HTS+GNI+GSL+A+ +L YGWGWSF+ P + GI+VYLFL P N P
Sbjct: 186 HTSLGNIAGSLIASGLLRYGWGWSFLGPAFLMTFLGIVVYLFL---P-------VNPPTV 235
Query: 269 SSERLPNDEESHMQKGKTAAVENNSGIRYGSG-SRTSVGLFQACLIPGVIPFAFCLFFAK 327
+ER + +S M+ G T E+ R +G R +VG A IPGV PFAFCLFF K
Sbjct: 236 EAERDGTEIDSTMRLGDTIT-ESLLESRMSTGFDRKAVGFMAAWKIPGVAPFAFCLFFTK 294
Query: 328 LVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKLKARATT 387
LV+YTFLYWLPFY+S IGGEYLS +T+GNLST+FDV SD+L RA T
Sbjct: 295 LVSYTFLYWLPFYVSHNMIGGEYLSEETSGNLSTIFDVGGVVGGVLAGYISDQLNGRAIT 354
Query: 388 AATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRG 447
AA FMY AIP++ LYR +G +S T+N++LM +G+F+ GP+ALITTAVSADLGTH S++G
Sbjct: 355 AAGFMYLAIPALFLYRVFGHISLTINVILMFTSGVFIIGPFALITTAVSADLGTHKSLKG 414
Query: 448 DSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAE 507
++RALATV+AIIDGTGSVGAA+GP+LTG++S WDAVF MLM ALI+GLLL++L+IAE
Sbjct: 415 NARALATVSAIIDGTGSVGAAIGPVLTGYISAISWDAVFYMLMTAALISGLLLTKLIIAE 474
Query: 508 I 508
+
Sbjct: 475 V 475
|
|
| UNIPROTKB|E1BZ06 SLC37A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 223/487 (45%), Positives = 296/487 (60%)
Query: 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRN 90
YR I +TF YA +H SRKP SIVK GE + R
Sbjct: 20 YRAFIFTLTFFLYASFHLSRKPISIVK------------------GELHKHCAAIQSVRK 61
Query: 91 VSTAK--GWDPFNGTHGTSKLGEIDLAFLACYSVGM-FVAGHLGDTLDLRLFLTTGMVGS 147
+S A GW+PF+ + LG +D +FL Y++GM F +G +G+ L +R +LT GM+ S
Sbjct: 62 LSNASQCGWEPFDKNNYKQLLGALDYSFLCAYAIGMYFSSGIIGERLPIRYYLTVGMLAS 121
Query: 148 GIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN 207
G+F +FG+GYF +IH FY++ Q+ GL Q TGWPSVV IGNWFGK +RGLIMG+WN
Sbjct: 122 GLFTAMFGLGYFCNIHNLWFYIMAQIANGLVQTTGWPSVVTCIGNWFGKGRRGLIMGIWN 181
Query: 208 AHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267
+HTSVGNI GSL+AA + WG SF++PG I + GI+ +LFL +P+D+ +
Sbjct: 182 SHTSVGNILGSLIAAYWVSTCWGLSFVMPGVIIAVMGIVCFLFLIEHPKDISCSCTPSSV 241
Query: 268 PSSERLPNDEESHMQK----GKTAAVENNSGIRYGSGSR-TSVGLFQACL-IPGVIPFAF 321
ERL + QK + EN+S + G G TS F L IPGVI F+
Sbjct: 242 NLKERLVLCASAVNQKFTVYQSSTNQENSSTVGTGEGRHGTSAISFLGALRIPGVIEFSL 301
Query: 322 CLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKL 381
CL FAKLV+YTFL+WLP Y++ E +L K AG+LSTLFDV SD+L
Sbjct: 302 CLLFAKLVSYTFLFWLPLYITNVE----HLDAKRAGDLSTLFDVGGIFGGILAGLISDRL 357
Query: 382 KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGT 441
+ RA+T + A P++ ++ T + +V+++++G VNGPYALITTAVSADLGT
Sbjct: 358 EKRASTCGMMLLLAAPTLYMFSTVSKMGLEATVVMLLISGALVNGPYALITTAVSADLGT 417
Query: 442 HSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLS 501
H S++G++RAL+TVTAIIDGTGSVGAALGPLL G +S GW+ VF MLMV A L L
Sbjct: 418 HKSLKGNARALSTVTAIIDGTGSVGAALGPLLAGLISPSGWNNVFYMLMVADGCALLFLL 477
Query: 502 RLVIAEI 508
L+ E+
Sbjct: 478 HLIQKEL 484
|
|
| UNIPROTKB|Q58CV5 SLC37A2 "Sugar phosphate exchanger 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 228/484 (47%), Positives = 304/484 (62%)
Query: 31 YRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPKKKPWPIGEFFVRQEFVGL 87
YR ILLITF+ Y CYH SRKP S+VKS L C + ++ P+
Sbjct: 11 YRAFILLITFLIYTCYHMSRKPISVVKSRLHHNCSEVIQ-------PVNSTH-------- 55
Query: 88 DRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGS 147
N +T W PF+ ++ LG +D AFL Y++GMF++G G+ L LR +LT GM+ S
Sbjct: 56 SLNDTTWCNWAPFDKSNYKELLGAVDNAFLVAYAIGMFISGIFGERLPLRYYLTAGMLLS 115
Query: 148 GIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN 207
G+F LFG+GYF +IH +++++Q+ GL Q TGWP+VV+ +GNWFGK KRGLIMG+WN
Sbjct: 116 GLFTSLFGLGYFWNIHVLWYFVLVQIFNGLVQTTGWPAVVSCVGNWFGKGKRGLIMGIWN 175
Query: 208 AHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF-PYANDP 266
+HTSVGNI GSLLA +D WG SF++PG + GII + FL YPEDV P +
Sbjct: 176 SHTSVGNILGSLLAGVWVDQQWGLSFVVPGVITAIMGIITFFFLIEYPEDVDCSPPQHHG 235
Query: 267 IPS-SERLPNDEESHMQKGKTAAVENN-SGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF 324
P S+ P D + K +++E+ + + S +++ F A IPGV+ F+ CL
Sbjct: 236 NPEESQDQPEDPANGPSCNKESSLESAVTCSKEASAQPSAISFFGALRIPGVVEFSLCLL 295
Query: 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVXXXXXXXXXXXXSDKLKAR 384
FAKLV+YTFLYWLP Y+S + + K AG+LSTLFDV SD + R
Sbjct: 296 FAKLVSYTFLYWLPLYISNVV----HFTAKEAGDLSTLFDVGGIIGGILAGLVSDYINGR 351
Query: 385 ATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSS 444
ATT + A P M LY G ++IV++++ G VNGPYALITTAVSADLGTH S
Sbjct: 352 ATTCCVMLILAAPMMFLYNHVGQRGIGISIVMLLICGALVNGPYALITTAVSADLGTHKS 411
Query: 445 VRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLV 504
++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF ML+ ++A LLL RLV
Sbjct: 412 LKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLIAADVLACLLLCRLV 471
Query: 505 IAEI 508
EI
Sbjct: 472 YKEI 475
|
|
| RGD|1564160 Slc37a2 "solute carrier family 37 (glycerol-3-phosphate transporter), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 232/502 (46%), Positives = 303/502 (60%)
Query: 13 PGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPK 69
PGI +R W +R ILL+TF+ Y CYH SRKP SI+KS L C D ++
Sbjct: 7 PGIWFLRAFSRDSW----FRGFILLLTFLIYVCYHMSRKPISIIKSRLHQNCSDIVR--- 59
Query: 70 KKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGH 129
PI + D N +T W PF+ LG +D AFL Y++GMF++G
Sbjct: 60 ----PINDTH--------DLNDTTWCSWSPFDKDDYKELLGAVDNAFLVAYAIGMFISGI 107
Query: 130 LGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189
G+ L LR +L+ GMV SG+F LFG+GYF +IH +++++Q+ GL Q TGWPSVV
Sbjct: 108 FGERLPLRYYLSAGMVLSGLFTSLFGLGYFWNIHMLWYFVLIQICNGLVQTTGWPSVVTC 167
Query: 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYL 249
+GNWFGK KRG IMG+WN+HTSVGNI GSL+A ++ WG SFI+PG + G+I +L
Sbjct: 168 VGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGVWVNQHWGLSFIVPGIITAVMGVITFL 227
Query: 250 FLAAYPEDVGF--PYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRT-SVG 306
FL YPEDV P +D + P D + + ++V+ + G ++
Sbjct: 228 FLIEYPEDVDCTPPQHHDDLEKERDNPEDPVNSPYSSRESSVDIAASSSKEQGPEPEAIS 287
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVX 366
A IPGVI F+ CL FAKLV+YTFLYWLP Y+ + S K AG+LSTLFDV
Sbjct: 288 FLGALKIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNVA----HFSAKEAGDLSTLFDVG 343
Query: 367 XXXXXXXXXXXSDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
SD RATT + A P M LY G T +IV++++ G+ VNG
Sbjct: 344 GIIGGIMAGLISDYTNGRATTCCVMLILAAPMMFLYNYIGQNGITSSIVMLIICGVLVNG 403
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTH S++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF
Sbjct: 404 PYALITTAVSADLGTHESLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVF 463
Query: 487 IMLMVGALIAGLLLSRLVIAEI 508
ML+ ++A LLL RLV EI
Sbjct: 464 YMLISADILACLLLCRLVYKEI 485
|
|
| UNIPROTKB|F1S792 SLC37A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 231/502 (46%), Positives = 309/502 (61%)
Query: 13 PGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLKGPK 69
PG+ +R W +R ILLITF Y CYH SRKP S+VKS L C ++ P
Sbjct: 7 PGVWFLRAFSRDSW----FRGFILLITFFIYTCYHMSRKPISVVKSRLHHNCSGIIQ-PT 61
Query: 70 KKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGH 129
I N +T W PF+ ++ LG +D AFL Y++GMF++G
Sbjct: 62 NNTHSI--------------NDTTWCNWAPFDQSNYKELLGAVDNAFLVAYAIGMFISGI 107
Query: 130 LGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189
G+ L LR +L+ GM+ SG+F LFG+GYF +IH +++++Q+ GL Q TGWPSVVA
Sbjct: 108 FGERLPLRYYLSAGMLLSGLFTALFGLGYFWNIHVLWYFVLVQICNGLAQTTGWPSVVAC 167
Query: 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYL 249
+GNWFGK KRGLIMG+WN+HTSVGNI GSL+A +D WG SFI+PG + G+I +
Sbjct: 168 VGNWFGKGKRGLIMGIWNSHTSVGNILGSLIAGIWVDEQWGLSFIVPGIITAIMGLITFF 227
Query: 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGS--GSR-TSVG 306
FL YPEDV + S + E+SH + +++E S + Y G++ ++
Sbjct: 228 FLIEYPEDVDCTPPQHHVESEDSQDLPEDSH--SNRDSSLE--SAVTYSKEPGAQPAAIS 283
Query: 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVX 366
F A IPGVI F+ CL FAKLV+YTFLYWLP Y+ + + K AG+LSTLFDV
Sbjct: 284 FFGALRIPGVIEFSLCLLFAKLVSYTFLYWLPLYIFNVV----HFTAKEAGDLSTLFDVG 339
Query: 367 XXXXXXXXXXXSDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNG 426
SD RATT + A P M LY + G +++IV+++++G VNG
Sbjct: 340 GIIGGILAGLISDYTNGRATTCCVMLILAAPMMFLYNSIGQRGISISIVMLIISGALVNG 399
Query: 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVF 486
PYALITTAVSADLGTH S++G+++AL+TVTAIIDGTGS+GAALGPLL G +S GW+ VF
Sbjct: 400 PYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVF 459
Query: 487 IMLMVGALIAGLLLSRLVIAEI 508
ML+ ++A LLL RLV E+
Sbjct: 460 YMLISADILACLLLCRLVYKEV 481
|
|
| UNIPROTKB|E1B9Q0 SLC37A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 117/252 (46%), Positives = 155/252 (61%)
Query: 10 QTPPGILLIRKIRGKDWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVL---CPDPLK 66
Q PPGI I W YR I ++TF+ YA +H SRKP SIVK L C
Sbjct: 3 QLPPGIRFIISFSRDQW----YRAFIFILTFLLYASFHLSRKPISIVKGELHSYCTASND 58
Query: 67 GPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFV 126
G K + R + T GW PF+ + LG +D +FL Y++GM++
Sbjct: 59 G--KVGFSSQSQKARDALAHQLPDNGTDCGWAPFDQDNYQQLLGALDYSFLCAYAIGMYL 116
Query: 127 AGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186
+G +G+ L +R +LT GM+ SG F LFG+GYF +IH+FGFY+I Q++ GL Q TGWPSV
Sbjct: 117 SGIIGERLPIRCYLTFGMLASGAFTALFGVGYFYNIHSFGFYVITQIINGLVQTTGWPSV 176
Query: 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGII 246
V +GNWFGK +RGLIMGVWN+HTSVGNI GSL+A + WG SFI+PGA + GI+
Sbjct: 177 VTCLGNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAIVAAMGIL 236
Query: 247 VYLFLAAYPEDV 258
+LFL +P+D+
Sbjct: 237 CFLFLIEHPKDI 248
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SY29 | SPX2_DANRE | No assigned EC number | 0.4637 | 0.8698 | 0.9473 | yes | no |
| Q5M7K3 | SPX2_XENTR | No assigned EC number | 0.4510 | 0.8810 | 0.9498 | yes | no |
| Q8TED4 | SPX2_HUMAN | No assigned EC number | 0.4681 | 0.8791 | 0.9441 | yes | no |
| Q9WU81 | SPX2_MOUSE | No assigned EC number | 0.4780 | 0.8791 | 0.9441 | yes | no |
| O23596 | GLPT4_ARATH | No assigned EC number | 0.6870 | 0.9739 | 0.9632 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 7e-48 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-37 | |
| TIGR00712 | 438 | TIGR00712, glpT, glycerol-3-phosphate transporter | 2e-25 | |
| PRK09556 | 467 | PRK09556, uhpT, sugar phosphate antiporter; Review | 4e-24 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-22 | |
| PRK11663 | 434 | PRK11663, PRK11663, regulatory protein UhpC; Provi | 3e-18 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-17 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-15 | |
| PRK11273 | 452 | PRK11273, glpT, sn-glycerol-3-phosphate transporte | 2e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-12 | |
| TIGR02332 | 412 | TIGR02332, HpaX, 4-hydroxyphenylacetate permease | 1e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 8e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 7e-48
Identities = 130/501 (25%), Positives = 201/501 (40%), Gaps = 97/501 (19%)
Query: 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRN 90
+R I L FI YA ++ +RK ++ L E GL +
Sbjct: 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPAL---------------------IEDGGLSK- 63
Query: 91 VSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIF 150
++LG + AF Y V FV G L D + R F+ G++ S I
Sbjct: 64 ----------------TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIV 107
Query: 151 VGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN-AH 209
LFG + + ++ ++ G FQ GWP I +WF +++RG +WN +H
Sbjct: 108 NILFGFS-----PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH 162
Query: 210 TSVGNISGSLLAASVL------DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP-- 261
NI G+L L GW +F PG ++ +I+ L P+ G P
Sbjct: 163 ----NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI 218
Query: 262 --YANDPIPSS-ERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIP 318
Y DP+ E N+ + Q ++N +
Sbjct: 219 EEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKN----------------------KLIWL 256
Query: 319 FAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYIS 378
A F +V Y W P YLS+ + S+ A +LF+V G+ G ++AG++S
Sbjct: 257 LALANVFVYVVRYGINDWGPLYLSEV----KGFSLVKANWAISLFEVAGLPGTLLAGWLS 312
Query: 379 DKLKA--RATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS 436
DKL R A FM S++LY + S ++ +L+ + G + GP LI A
Sbjct: 313 DKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAA- 371
Query: 437 ADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLS-TQGWDAVFIMLMVGAL 494
A+ +A T T + + GAAL L G+++ T GWD FI+L + AL
Sbjct: 372 AEFVP-------KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAAL 424
Query: 495 IAGLLLSRLVIAEITEKIRRP 515
+A LLL + AE +
Sbjct: 425 LAILLLLPVWNAEERKIRDEK 445
|
Length = 448 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-37
Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 40/385 (10%)
Query: 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG 166
+ LG + +F Y + FV G + D + R+FL G++ I FG L +
Sbjct: 30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV---- 85
Query: 167 FYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASV- 224
+ + G+FQ GWP + WF + +RG + WN +H G + L+ +
Sbjct: 86 -MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144
Query: 225 LDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKG 284
Y W W FI+PG ++ +I +L L P+ G +P +E +PN+E +
Sbjct: 145 ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCG-------LPPAEEMPNEEPDGDAEK 197
Query: 285 KTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344
K + ++ + L L + + F +V L W P YL+Q
Sbjct: 198 KEEEL-----------TKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQE 246
Query: 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLY 402
+ S + A TL+++GG+ G ++AG++SDKL R A FM I S+L+Y
Sbjct: 247 ----KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302
Query: 403 RTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT 462
+ + ++++ + G V GP LI G +S +A T +
Sbjct: 303 WLNPAANPLMDLICLFALGFLVYGPQMLI--------GVIASELAPKKAAGTAAGFVGFF 354
Query: 463 GSVGAALGPLLTGFL-STQGWDAVF 486
+G L L G+L GW F
Sbjct: 355 AYLGGILAGLPLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 102/449 (22%), Positives = 183/449 (40%), Gaps = 58/449 (12%)
Query: 75 IGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK--LGEIDLAFLACYSVGMFVAGHLGD 132
+G FF + + +N + A P+ G SK LG A Y F+ G + D
Sbjct: 30 LGIFFGYAAYYLVRKNFALAM---PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD 86
Query: 133 TLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGN 192
+ R+FL G++ S + L G + + ++ + G FQ GWP + +
Sbjct: 87 RSNPRVFLPAGLILSAAVMLLMGFVPWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH 145
Query: 193 WFGKRKRGLIMGVWN-AHTSVGNISGSL-LAASVLDYGWGWSFILPGASIVMGGIIVYLF 250
W+ + +RG I+ +WN AH G I L L W + P ++ + +
Sbjct: 146 WWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAM 205
Query: 251 LAAYPEDVGFP----YANDPIPSSERLPNDEESHMQKGKTAA------VENNSGIRYGSG 300
+ P+ G P Y ND P+D ++ TA V N + Y
Sbjct: 206 MRDTPQSCGLPPIEEYRND-------YPDDYNEKAEQELTAKEIFMQYVLPNKLLWY--- 255
Query: 301 SRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLS 360
A F L+ Y L W P YL + ++ ++ +
Sbjct: 256 ------------------IAIANVFVYLLRYGVLDWSPTYLKEV----KHFALDKSSWAY 293
Query: 361 TLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMM 418
L++ GI G ++ G++SDK+ R T FM ++++Y + + V+++ M+
Sbjct: 294 FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI 353
Query: 419 VAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478
V G + GP LI + +L + G + + + G+ + A +G + F
Sbjct: 354 VIGFLIYGPVMLIGLH-ALELAPKKAA-GTAAGFTGLFGYLGGSVAASAIVGYTVDFF-- 409
Query: 479 TQGWDAVFIMLMVGALIAGLLLSRLVIAE 507
GWD F++++ G+++A +LL ++I E
Sbjct: 410 --GWDGGFMVMIGGSILAVILLIVVMIGE 436
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438 |
| >gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 110/435 (25%), Positives = 173/435 (39%), Gaps = 65/435 (14%)
Query: 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAF 165
T++LG I L F Y VG + G+ D + + FL ++ S I + FG +
Sbjct: 63 TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSL 122
Query: 166 GFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLA---A 222
G + + ++G FQ+TG P + I W +RKRG +G WN ++G +A A
Sbjct: 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182
Query: 223 SVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI--PSSERLPNDEES 279
+ D FI P ++ G I + + PE++G+ A + P SE E +
Sbjct: 183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETEST 242
Query: 280 HMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLY---- 335
M K + +F ++ + + C A FLY
Sbjct: 243 DMTKWQ---------------------IFVEYVLKNPVIWLLC------FANIFLYIVRI 275
Query: 336 ----WLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATF 391
W P Y Q E+G S + A N TLF++G + G ++ G++SD R A
Sbjct: 276 GIDNWSPVYAFQ-ELG---FSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI 331
Query: 392 MYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALI------------TTAVSADL 439
A I L + + S+ + + + G V GP LI +
Sbjct: 332 ALALIIFTLGVYQHAT-SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIK 390
Query: 440 GTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLL 499
GT + + GDS A + I D T + G LT GW F L + A+ L
Sbjct: 391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT------GWAGTFAALDIAAIGCICL 444
Query: 500 LSRLVIAEITEKIRR 514
++ + + E KIRR
Sbjct: 445 MAIVAVME-ERKIRR 458
|
Length = 467 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 9e-22
Identities = 70/358 (19%), Positives = 129/358 (36%), Gaps = 52/358 (14%)
Query: 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174
AF Y++ +AG L D R L G++ + + L + L+++++
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF-----ASSLWLLLVLRVL 94
Query: 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSF 233
GL +P+ A+I +WF +RG +G+ +A +G G LL + +GW +F
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 234 ILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNS 293
++ ++ ++ L L P + P + P+
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAP----------------------- 191
Query: 294 GIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSV 353
V ++ L V+ L + L +LP Y LS
Sbjct: 192 ----------LVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLG-----LSA 236
Query: 354 KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVN 413
AG L L + G G ++ G +SD+L R + + ++ L + S
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 414 IVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGP 471
+V +++ G + + VS T + + + GS+G ALGP
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEER--------GTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-18
Identities = 104/411 (25%), Positives = 169/411 (41%), Gaps = 65/411 (15%)
Query: 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG 166
S +G + F Y V FV+G + D + R F+ G++ +GI LFG L AF
Sbjct: 58 SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL--WAFA 115
Query: 167 FYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASVL 225
++ ++ FQ GWP ++ W+ + +RG +WN AH G + ++ A L
Sbjct: 116 ---LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172
Query: 226 DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP----YANDPIPSSERLPNDEESHM 281
YGW + ++ G ++ G+ + L P+ +G P + +D + E +
Sbjct: 173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL---------ELAQQ 223
Query: 282 QKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341
Q+G G+ V L P + +F +V W Y+
Sbjct: 224 QEGA--------GLSRKEILTKYV-----LLNPYIWLLSFSYVLVYVVRAAINDWGNLYM 270
Query: 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATF---MYAAI 396
S+T + + TA + ++F++GG G ++AG+ SDKL R F + ++
Sbjct: 271 SET----LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV 326
Query: 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVT 456
S+ L V Q G FV GP LI A A +H G +
Sbjct: 327 GSLWLMPFASYVMQA---ACFFTIGFFVFGPQMLIGMA--AAECSHKEAAGAA------- 374
Query: 457 AIIDGTGSVG--AALGPLLTGF-----LSTQGWDAVFIMLMVGALIAGLLL 500
TG VG A LG L+G+ L W F+++ + A I+ LLL
Sbjct: 375 -----TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420
|
Length = 434 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 88/403 (21%), Positives = 158/403 (39%), Gaps = 53/403 (13%)
Query: 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174
AF Y VG F G L D R L +V G+F GL + A+ I++++
Sbjct: 37 AFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAF---AGAYVSLYILRVL 91
Query: 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSF 233
G +A +P ++ ++ +WF +R + ++N+ +G I G L +L + W W+F
Sbjct: 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF 151
Query: 234 ILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNS 293
I+ G ++ G++ F+ P+ + + + + Q+GK +
Sbjct: 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE-----KYIVVGGLLAEQQGKGPSTPKKY 206
Query: 294 GIRYGSGSRTSVGLF--QACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYL 351
I+ R GL Q + G+ FL W P YL Q L
Sbjct: 207 QIKELLKDRRVWGLALGQFLVNIGL--------------GFFLTWFPTYLVQERG----L 248
Query: 352 SVKTAGNLSTLFDVGGIFGGIIAGYISDKLK--------ARATTAATFMYAAIPSMLLYR 403
S+ AG +++L + G G I+ G +SD L AR T + ++
Sbjct: 249 SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA--- 305
Query: 404 TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG 463
V+ + ++ G F G A+ +S + +I+ G
Sbjct: 306 -TNYVNIPYAALALVALGFFGLGAGAIGWALISDNA--------PGNIAGLTGGLINSLG 356
Query: 464 SVGAALGPLLTGFL--STQGWDAVFIMLMVGALIAGLLLSRLV 504
++G +GP++ G + +T + +++ ALI L LV
Sbjct: 357 NLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLLV 399
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 93/374 (24%), Positives = 156/374 (41%), Gaps = 29/374 (7%)
Query: 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAF 165
+LG + A L + G G L D + R L ++ +F L ++
Sbjct: 51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLL--CALATNVTQL 108
Query: 166 GFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225
+ +AGL P++ A++ + KR RG +G+ +G G LA ++
Sbjct: 109 LIL---RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165
Query: 226 -DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKG 284
+GW F + G + ++ +++ FL PE + F + P + +
Sbjct: 166 PVFGWRSLFYVGGIAPLLLLLLLMRFL---PESIDFLVSKRPETVRRIVNAIAPQMQAEA 222
Query: 285 KTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLY-WLPFYLSQ 343
++A E + LFQ + L+F LV FL WLP + +
Sbjct: 223 QSALPEQKATQGTKRSVFK--ALFQGKTARIT-VLLWLLYFMLLVGVYFLTNWLPKLMVE 279
Query: 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR 403
G S+ A LF+ GG+ G II G+++D+L R TA + A+ ++L+
Sbjct: 280 L--GF---SLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-VTALLLLLGAVFAVLVGS 333
Query: 404 TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG 463
T S T+ ++L +AG FVNG + + A+ A RA AI G G
Sbjct: 334 TLFSP--TLLLLLGAIAGFFVNGGQSGL-YALMALF-----YPTAIRATGVGWAI--GIG 383
Query: 464 SVGAALGPLLTGFL 477
+GA +GP+L G+L
Sbjct: 384 RLGAIIGPILAGYL 397
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 92/411 (22%), Positives = 172/411 (41%), Gaps = 63/411 (15%)
Query: 120 YSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLD--IHAFGFYLIMQMVAGL 177
Y F+ G + D + R+FL G++ + + G F+ + ++ + G
Sbjct: 76 YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG---FVPWATSSIAVMFVLLFLCGW 132
Query: 178 FQATGWPSVVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASVLDYG-WGWSFIL 235
FQ GWP + +W+ +++RG I+ VWN AH G + L + + W + +
Sbjct: 133 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192
Query: 236 PGASIVMGGIIVYLFLAAYPEDVGFP----YANDPIPSSERLPND-EESHMQKGKTAAVE 290
P + ++ + + + P+ G P Y ND P+D E H Q+
Sbjct: 193 PAFAAILVALFAFAMMRDTPQSCGLPPIEEYKND-------YPDDYNEKHEQE------- 238
Query: 291 NNSGIRYGSGSRTSVGLFQACLIPGVIPF--AFCLFFAKLVAYTFLYWLPFYLSQTEIGG 348
T+ +F ++P + + A F L+ Y L W P YL +
Sbjct: 239 -----------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV---- 283
Query: 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLYRTYG 406
++ ++ + L++ GI G ++ G++SDK+ R T FM + ++Y
Sbjct: 284 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP 343
Query: 407 SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI------ID 460
+ + TV++ M+V G + GP LI G H+ +A T +
Sbjct: 344 AGNPTVDMACMIVIGFLIYGPVMLI--------GLHALELAPKKAAGTAAGFTGLFGYLG 395
Query: 461 GTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVIAEITEK 511
G+ + A +G + F GWD F++++ G+++A +LL ++I E
Sbjct: 396 GSVAASAIVGYTVDFF----GWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442
|
Length = 452 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174
AF Y++G +AG+L D R L G++ + L + L+ + +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----SSLWLLLVGRFL 96
Query: 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSF 233
GL +P+ A+I WF ++RG +G+++A +G + G LL + + GW W F
Sbjct: 97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 234 ILPGASIVMGGIIVYLFL 251
++ ++ +++ L
Sbjct: 157 LILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 312 LIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGG 371
L+ ++ A F Y L +LP YL + LS AG L +LF +GGI G
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL----GLSAAEAGLLLSLFGLGGILGA 228
Query: 372 IIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALI 431
++ G +SD+L R + A +LL S+ + +V +++ G + + +
Sbjct: 229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL--ALLLVALLLLGFGLGFAFPAL 286
Query: 432 TTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL-STQGWDAVFIMLM 490
T S A T + + + GS+G ALGPLL G L T G+ VF++L
Sbjct: 287 LTLASELAPPE--------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338
Query: 491 VGALIAGLLLSRLV 504
AL+A LLL L
Sbjct: 339 ALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 73/319 (22%), Positives = 123/319 (38%), Gaps = 38/319 (11%)
Query: 170 IMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY-- 227
+++++ G+ +A P ++ + WF R ++ V G +L+ +L
Sbjct: 101 LLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160
Query: 228 -----GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQ 282
GW W F+L G V+ G++ + +L P+ + D E + ND+ + Q
Sbjct: 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQ 220
Query: 283 KGKT---AAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPF 339
AA+ S +R P ++ + F W P
Sbjct: 221 PEGAFAHAAMPQRSMLR-------------EIFTPAIMLYTLAYFCLTNTLSAINIWTPQ 267
Query: 340 YLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARAT-TAATFMYAAIPS 398
L G + + G L+ + IFG I SD+LK R TA +++AA
Sbjct: 268 ILQSFNQGSSNIMI---GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW 324
Query: 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI 458
+L T ++ Q + I+ M G F T S L +A A A+
Sbjct: 325 LLASATDHNLIQLLGII-MASMGSFSAMAIFWTTPDQSISL----------QARAIAIAV 373
Query: 459 IDGTGSVGAALGPLLTGFL 477
I+ TG++G+AL P L G L
Sbjct: 374 INATGNIGSALSPFLIGIL 392
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 322 CLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL 381
FF +V Y L WLP L G+ LS AG + F++GG G ++ G + D+L
Sbjct: 228 SYFFTLIVLYFLLNWLPSLL-----VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL 282
Query: 382 KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMV----AGLFVNGP----YALITT 433
+ R +YA I + L +++ + M++ AGLFV G YAL
Sbjct: 283 RPRRVVL--LIYAGILASLA-----ALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPL 335
Query: 434 AVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIML---- 489
VRG A G +G+ GPLL G L G V ++
Sbjct: 336 FYPT------QVRGTGVGAAVA------VGRLGSMAGPLLAGQLLALGRSTVGVIGASIP 383
Query: 490 --MVGALIAGLLLSR 502
+V AL A LL+SR
Sbjct: 384 VILVAALAALLLVSR 398
|
Length = 406 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 12/190 (6%)
Query: 323 LFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLK 382
LF A +A L L +S G L T F +G +AG +SD+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 383 ARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTH 442
R + A+ +LL +VL ++ GL + ++
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLL---LVLRVLQGLGGGALFPAAAALIAD----- 112
Query: 443 SSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501
+ R A ++ +GAALGPLL G L++ GW A F++L + AL+A +L +
Sbjct: 113 -WFPPEERGRAL--GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169
Query: 502 RLVIAEITEK 511
L+ E
Sbjct: 170 LLLPRPPPES 179
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 116 FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVA 175
L+ + +G + LG L RL ++ G+ + G+ + L+ ++
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLL 275
Query: 176 GLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSFI 234
G +P+++ + RG G++N S+G G LLA +LD G+G F+
Sbjct: 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL 335
Query: 235 LPGASIVMGGIIVYLF 250
+ A ++ +++ L
Sbjct: 336 ILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 2/137 (1%)
Query: 116 FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVA 175
LA Y++G + L L R ++ L + L + I + +
Sbjct: 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLI-IARFLQ 61
Query: 176 GLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY-GWGWSFI 234
G A + A+I + + +RG+ +G+ +A ++G + G L + + GW F+
Sbjct: 62 GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121
Query: 235 LPGASIVMGGIIVYLFL 251
+ I++ L
Sbjct: 122 FLAILALAAFILLAFLL 138
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 351 LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410
LS AG + + F +G G ++AGY+SD+ R + A+ S+LL + S
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF---ASSL 87
Query: 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALG 470
+ +V + GL Y ++ + + +GA LG
Sbjct: 88 WLLLVGRFLLGLGGGALYPAAAALIAE--------WFPPKERGRALGLFSAGFGLGALLG 139
Query: 471 PLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLV 504
PLL G L+ GW +F++L + L+ LLL L+
Sbjct: 140 PLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 75/393 (19%), Positives = 138/393 (35%), Gaps = 71/393 (18%)
Query: 121 SVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQA 180
++ G L D R + M+ I G+ + + + L++ ++ GL A
Sbjct: 63 ALLRLPYGFLTDRFGGRKWTILSMLLLLIPC--LGLAFAVTYPSTWQLLVIGLLLGLAGA 120
Query: 181 TGWPSVVAVIGNWFGKRKRGLIMGVW---NAHTSVGNISGSLLAASVLDYGWGWSFILPG 237
+ + + +F K K+GL +G+ N +V + L+A + W +
Sbjct: 121 S-FAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV 179
Query: 238 ASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRY 297
++ + ++ +L + PE +P+ K ++
Sbjct: 180 VALAIAAVLAWLGMNDVPEHR--ASVKPQLPAQL-------------KAVFSNKDT---- 220
Query: 298 GSGSRTSVGLFQACLIPGVIPFAFCLF----FAKLVAYTFLYWLPFYLSQTEIGGEYLSV 353
+ L F V ++ +LP YL T+ G LS
Sbjct: 221 ---------------------WLLSLLYFATFGGFVGFSA--YLPMYL-VTQFG---LSP 253
Query: 354 KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVN 413
TAG ++ LF + G + G++SD++ R T A F+ A+ + LL S+ T
Sbjct: 254 VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALL-----SLFLTGF 308
Query: 414 IVLMMVAGLFVNGPYALITTAVSADLGTHSSVRG----DSRALATVTAIIDGTGSVGAAL 469
+ V A LG S + + VT I+ G +G
Sbjct: 309 GHGGSFVVFVA----VFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFF 364
Query: 470 GPLLTGFL--STQGWDAVFIMLMVGALIAGLLL 500
PL G T + F++L+ L+A +L
Sbjct: 365 LPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397
|
Length = 417 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 58/337 (17%), Positives = 106/337 (31%), Gaps = 68/337 (20%)
Query: 169 LIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY- 227
+ + G+F + ++ KRG + + ++ + G L +
Sbjct: 109 ALAGLAHGVFWSIAAALAARLVP----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 228 GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTA 287
GW +F+ I + ++ L L LP E S
Sbjct: 165 GWRATFLA----IAVLALLALLLLWK------------------LLPPSEISG------- 195
Query: 288 AVENNSGIRYGSGSRTSVGLFQACLIPGVIP---FAFCLFFAKLVAYTFLYWLPFYLSQT 344
S L + PGV+ F YT++ PF S
Sbjct: 196 -----------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIR--PFLESVA 242
Query: 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT 404
+S+ + F + G G ++ G ++D+ RA AA + A L T
Sbjct: 243 GFSVSAVSL-----VLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLAL---T 294
Query: 405 YGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS 464
+ S + + L+ + G + + T ++ A ++ +
Sbjct: 295 FTGASPALALALLFLWGFAFSPALQGLQTRLARLAP---------DAADLAGSLNVAAFN 345
Query: 465 VGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLL 500
+G ALG L G + G+ A + L+A LL
Sbjct: 346 LGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.91 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.9 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.9 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.83 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.78 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.75 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.75 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.72 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.6 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.55 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.5 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.5 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.48 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.48 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.48 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.47 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.47 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.46 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.45 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.43 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.42 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.42 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.39 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.39 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.38 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.38 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.38 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.38 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.37 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.37 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.37 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.36 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.36 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.35 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.34 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.34 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.31 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.31 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.31 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.31 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.29 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.28 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.28 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.28 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.28 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.27 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.24 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.24 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.23 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.23 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.22 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.21 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.21 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.18 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.18 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.15 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.15 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.14 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.14 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.12 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.11 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.11 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.09 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.08 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.05 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.05 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.04 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.0 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.99 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.99 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.98 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.97 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.89 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.88 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.86 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.84 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.8 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.77 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.75 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.69 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.69 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.59 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.58 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.58 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.57 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.53 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.49 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.48 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.43 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.43 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.43 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.4 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.34 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.33 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.32 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.3 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 98.29 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.28 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.25 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.22 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.2 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.15 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 98.05 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.91 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.86 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.78 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.76 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.69 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.65 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.65 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.64 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.62 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.45 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.34 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.14 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.1 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.09 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.93 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.72 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.29 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.72 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.65 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.64 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.41 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.95 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.64 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.01 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.53 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.8 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.38 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 91.37 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.31 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.06 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 84.11 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 82.86 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 80.61 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=356.50 Aligned_cols=411 Identities=29% Similarity=0.491 Sum_probs=351.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCC
Q 009268 25 DWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTH 104 (538)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 104 (538)
++..+++|+.++..++++|...|+.|.+++.+.|.+.++ .++|
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------------------------------~~ls------ 62 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------------------------------GGLS------ 62 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------------------------------cCCC------
Confidence 456788999999999999999999999999999999988 6788
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 105 GTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 105 ~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.+|+|++.+.+++.|.++..+.|.++||.+.|+.+.+++++.++.+++++++ ++++.+.++.++.|..+|..+|
T Consensus 63 -k~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----~s~~~~~~l~~lng~fQg~Gwp 136 (448)
T COG2271 63 -KTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----PSLFLFAVLWVLNGWFQGMGWP 136 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHH--HHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLA--ASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP 261 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~--~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 261 (538)
++...+..|++++|||+..++++.+.++|..+.|++. +++. +++||..|++.++++++++++.++..+|+|+....+
T Consensus 137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP 216 (448)
T COG2271 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP 216 (448)
T ss_pred HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 9999999999999999999999999999999998887 6666 579999999999999999999999999999987765
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccCcccccCC-CCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009268 262 YANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGS-GSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFY 340 (538)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
+-++...+..+..+ + +++. + ......-.+.+++||.+|.++++.++.+..-+++..|.|.|
T Consensus 217 ~ie~~~~d~~e~~~-~------~~~~-----------~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~Y 278 (448)
T COG2271 217 PIEEYRGDPLEIYE-E------EKEN-----------EGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLY 278 (448)
T ss_pred CHHHhhcCchhhhh-h------hccC-----------CCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 43322222111100 0 0000 0 01122234567899999999999999999999999999999
Q ss_pred hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 009268 341 LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMM 418 (538)
Q Consensus 341 l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (538)
+.|. .|+|..+++...+.+-+++++|.+++||++||+ |||....+.+.+....+++.+...+..+.+...++++
T Consensus 279 L~e~----k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~ 354 (448)
T COG2271 279 LSEV----KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLF 354 (448)
T ss_pred HHHh----cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 9999 799999999999999999999999999999997 6777776666666665666655555556788888999
Q ss_pred HHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHH
Q 009268 419 VAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIA 496 (538)
Q Consensus 419 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~ 496 (538)
.+|+...+.+-.......+..| ++..|++.|+...++++ |.+.+....|++.|. ||...|++..+.++++
T Consensus 355 ~iGf~IyGPqmLiGl~a~e~~p--------K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~ 426 (448)
T COG2271 355 IIGFLIYGPQMLIGLAAAEFVP--------KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA 426 (448)
T ss_pred HHHHHHhhHHHHHHHHHhcccc--------HhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence 9999999988666556555555 59999999999999999 999999999999999 9999999998888888
Q ss_pred HHHHHHHhhhhh
Q 009268 497 GLLLSRLVIAEI 508 (538)
Q Consensus 497 ~~~~~~~~~~~~ 508 (538)
.++.....+.+.
T Consensus 427 ~lll~~~~~~~~ 438 (448)
T COG2271 427 ILLLLPVWNAEE 438 (448)
T ss_pred HHHHHHHHhhcc
Confidence 877776655433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=345.01 Aligned_cols=411 Identities=23% Similarity=0.309 Sum_probs=312.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCC
Q 009268 25 DWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTH 104 (538)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 104 (538)
++...++.|.++.+++++++..+.+|.+++++.|.+.+| +|++
T Consensus 20 ~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------------------------------~~~s------ 62 (467)
T PRK09556 20 RKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------------------------------YGLS------ 62 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------------------------------cCCC------
Confidence 345667788899999999999999999999999999987 7888
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 105 GTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 105 ~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++++++++.++......++++.+++.|+++|++.+...|
T Consensus 63 -~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 141 (467)
T PRK09556 63 -TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGP 141 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999998888887777666541000118999999999999999999999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-h---CchHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-Y---GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF 260 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~---gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 260 (538)
...+++++|+|+++|++++|+...+.++|.+++++++.++.+ + +||..|.+.+++.++.+++.+++.+++|++...
T Consensus 142 ~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~ 221 (467)
T PRK09556 142 CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW 221 (467)
T ss_pred HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCC
Confidence 999999999999999999999999999999999988876653 2 699999998888888777777777777654332
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccc-hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009268 261 PYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVG-LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPF 339 (538)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
...++...+ .. ..+. ...+. ++...... .++.+++|.+|...+..++.....++...|+|.
T Consensus 222 ~~~~~~~~~---~~---~~~~-~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 283 (467)
T PRK09556 222 GKAEEIFGE---PI---SEED-KETES-----------TDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPV 283 (467)
T ss_pred CChhhcccC---cc---chhh-hcccc-----------ccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211100000 00 0000 00000 00000011 123688999999999888888888889999999
Q ss_pred HhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 009268 340 YLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMV 419 (538)
Q Consensus 340 ~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (538)
|+++. +|++..+++...+...++.+++.++.|+++||+++|+..........+...++.. ....+.+...+..++
T Consensus 284 yl~~~----~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 284 YAFQE----LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-QHATSEYMYLASLFA 358 (467)
T ss_pred HHHHc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 99987 7999999999999999999999999999999999888765544333332222221 112344444455666
Q ss_pred HHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhc------------c-CchHH
Q 009268 420 AGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLST------------Q-GWDAV 485 (538)
Q Consensus 420 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~------------~-g~~~~ 485 (538)
.|++..+..........+.+|+ +.+|++.|+.+...++ |++++|.+.|.+.| . +|+..
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~--------~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~ 430 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPK--------KAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT 430 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcch--------hhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH
Confidence 6765444443334555667765 8899999999999997 77999999999999 4 89999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 009268 486 FIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~ 504 (538)
|++..++.+++.++.+.+.
T Consensus 431 f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 431 FAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9988888888776666554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=331.84 Aligned_cols=402 Identities=24% Similarity=0.426 Sum_probs=301.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.+++|+.++...+++++..++++..++...|.+.++ +|++ ..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~ 58 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLAD-------------------------------LGLS-------RS 58 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-------------------------------cCCC-------HH
Confidence 445677788888899999999999999999999887 7888 89
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++++++++++ ++++.+++.|++.|++.|...+...
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~g~~~~~~~ 133 (434)
T PRK11663 59 DIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----SSLWAFALLWVLNAFFQGWGWPVCA 133 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDP 266 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 266 (538)
+++.+++|+++|++++++.+.+.++|..+++++++++. ++|||+.|++.+++.++.+++.++.++|+|++...+...+.
T Consensus 134 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 213 (434)
T PRK11663 134 KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW 213 (434)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc
Confidence 99999999999999999999999999999999988887 57999999998887776656666677877654321111100
Q ss_pred CCCCCCCCCccccccccccccccccCcccccCCCCccccch-hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 267 IPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGL-FQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345 (538)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (538)
..+.++. ..+ .+. ...+....+ ...+++|.+|.+.+..++....+..+.+|+|.|+.+.
T Consensus 214 ~~~~~~~----~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 273 (434)
T PRK11663 214 RHDALEL----AQQ----QEG-----------AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET- 273 (434)
T ss_pred ccccccc----chh----ccc-----------cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0000000 000 000 000000111 1356788888888888887788888889999999777
Q ss_pred cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 346 IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTA-ATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 346 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
+|++..+++...+...+++++++++.|+++||+ ++|+... .......+....+.. ....+........+..|+
T Consensus 274 ---~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 349 (434)
T PRK11663 274 ---LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL-MPFASYVMQAACFFTIGF 349 (434)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHH
Confidence 699999999999999999999999999999998 3333322 211111111111111 112233333333444454
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.............+..++ +.+|++.|+.++..++|+.++|.+.|++.|. ||+.+|+..+++.+++.+..+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 350 FVFGPQMLIGMAAAECSHK--------EAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHhhHHHHHHHHHHhcccH--------hhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 4333233333444555554 8899999999999999999999999999998 999999998888887766555
Q ss_pred HHh
Q 009268 502 RLV 504 (538)
Q Consensus 502 ~~~ 504 (538)
...
T Consensus 422 ~~~ 424 (434)
T PRK11663 422 PFL 424 (434)
T ss_pred HHH
Confidence 443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=305.62 Aligned_cols=376 Identities=18% Similarity=0.216 Sum_probs=321.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchh
Q 009268 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLG 110 (538)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g 110 (538)
..|..++.+.++.|..........-++|++.+| +++| ..+.|
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-------------------------------l~vs-------~~~aG 51 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAAD-------------------------------LGVS-------EGAAG 51 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-------------------------------cCCC-------HHHHH
Confidence 345556666777777777788888899999988 8888 99999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhh
Q 009268 111 EIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVI 190 (538)
Q Consensus 111 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 190 (538)
++.|.|.+++.++.|+...+.||+.||++++..+.++.+++++++++ +||+.++++|++.|+..|.+++...++.
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-----p~f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-----PSFAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 009268 191 GNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPS 269 (538)
Q Consensus 191 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 269 (538)
++..|+++|++++++...+..++.++|.+++.++. .+|||.+|++.++++++..+..+..+| |++...
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~--------- 195 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISG--------- 195 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCC---------
Confidence 99999999999999999999999999999999999 589999999999999998888888888 222111
Q ss_pred CCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 009268 270 SERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGE 349 (538)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (538)
..+....+..+++|+|+++...+..++.....+..++|+..++++. .
T Consensus 196 -----------------------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v----~ 242 (394)
T COG2814 196 -----------------------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV----A 242 (394)
T ss_pred -----------------------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc----c
Confidence 1111223357889999999999999999999999999999999999 7
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchh
Q 009268 350 YLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429 (538)
Q Consensus 350 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (538)
|++....+++...+++++++|+.++|++.|| +.|+.+.....+..+..+.+... ..+.+......++.|+.......
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~~~~~~~~~~~~~wg~a~~~~~~ 319 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT--GASPALALALLFLWGFAFSPALQ 319 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999 88888777767666665555443 34555666666667877766666
Q ss_pred hHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
.......+..| +.+..+.+++....++|..+|..++|.+.|. |+....+..+.+.+++.++.+...+
T Consensus 320 ~~~~~~a~~~p---------~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 320 GLQTRLARLAP---------DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHhcccCC---------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65555555322 6778999999999999999999999999999 9999999988888887777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=323.15 Aligned_cols=397 Identities=19% Similarity=0.290 Sum_probs=291.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccch
Q 009268 30 TYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKL 109 (538)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 109 (538)
+.+|.++.+++++++++++|+.+++.+.|.+.+| +|++ ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------------------------------~~~s-------~~~~ 45 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKD-------------------------------LGLS-------ATMF 45 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------------------------------cCCC-------HHHH
Confidence 4578889999999999999999999999998887 8888 9999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhh
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 189 (538)
|++.+++.+++.+++++.|+++||+|||+++..+.+++++++++++++ +|++.+++.|+++|++.+...+....+
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~ 120 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----TGPESLYLLRILVGIAEAGFLPGILLY 120 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred hhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-------hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009268 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-------YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262 (538)
Q Consensus 190 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 262 (538)
+.|++|+++|+++++++..+..+|.++++++++++.. .|||+.|++.+++.++..++.++++||+|++.+...
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~ 200 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD 200 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC
Confidence 9999999999999999999999999999999988763 599999999988888777777788888886532111
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
+++ ++...+..+....+.+..++. . . +........+++++ +|.+|...+..++.....+.+.+|+|.|++
T Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~-~---~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 270 (412)
T TIGR02332 201 EED-KKALKEMIDNDQLTLEQPEGA-F---A----HAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQ 270 (412)
T ss_pred HHH-HHHHHHHHHhccccccccccc-c---c----cccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000000000000000000 0 0 00000011233333 577888888888888888899999999998
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTA-ATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAG 421 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 421 (538)
+.. .|++..+++.+.....++.+++.++.|+++||+++|+... ....+..+. .++... ..+.........+.+
T Consensus 271 ~~~---~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~ 344 (412)
T TIGR02332 271 SFN---QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG-WLLASA--TDHNLIQLLGIIMAS 344 (412)
T ss_pred hcC---CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH-HHHHHh--cCCHHHHHHHHHHHH
Confidence 741 3678888999999999999999999999999998776533 332233222 222221 112222222222222
Q ss_pred HhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHH
Q 009268 422 LFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGA 493 (538)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~ 493 (538)
++.....+.......+..++ +.++++.|+.++..++|++++|.+.|.+.|. +|+.++++.+++.
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~--------~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 345 MGSFSAMAIFWTTPDQSISL--------QARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHhhhhhhHHHhhcccccch--------HHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 22222222222222333443 8899999999999999999999999999997 5998888666544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=319.93 Aligned_cols=414 Identities=21% Similarity=0.406 Sum_probs=299.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
..++++|.++..+++.+...+.++..++...|.+.++ |++ .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~--------------------------------g~s-------~ 62 (452)
T PRK11273 22 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ--------------------------------GFS-------R 62 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc--------------------------------CCC-------H
Confidence 3466778888888888999999998888888887643 555 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
++.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.++++++.. ...+++.+++.|++.|++.+...+..
T Consensus 63 ~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~gi~~g~~~~~~ 141 (452)
T PRK11273 63 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW-ATSSIAVMFVLLFLCGWFQGMGWPPC 141 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHHHHHhccchHH
Confidence 89999999999999999999999999999999999999999999988887510 01378889999999999999998888
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHh-HHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNI-SGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
...+.+++|+++|+++++++..+.++|.. .+|+++..+. ..|||+.|++.+++.++..++.++++||+|++...+.++
T Consensus 142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (452)
T PRK11273 142 GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIE 221 (452)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChh
Confidence 88999999999999999999999999875 4555443333 459999999998888777677777888876543221111
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccc-hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVG-LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQ 343 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (538)
+...+ .. +... ..+. +.+..... ....+++|.+|...+..++.....+....++|.|+++
T Consensus 222 ~~~~~----~~--~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~ 282 (452)
T PRK11273 222 EYKND----YP--DDYN--EKHE-----------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 282 (452)
T ss_pred hhhhc----cc--cccc--cccC-----------CCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0000 0000 00000111 1236788999988888888888888889999999998
Q ss_pred cccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHHH-HHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 009268 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAA-TFMYAAIPSMLLYRTYGSVSQTVNIVLMMVA 420 (538)
Q Consensus 344 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (538)
. +|++..+++.+..+..++.+++.++.|+++||+ +||+...+ ...+..+...++.. ....+.+...+..++.
T Consensus 283 ~----~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 357 (452)
T PRK11273 283 V----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL-NPAGNPTVDMACMIVI 357 (452)
T ss_pred h----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH-hcccChHHHHHHHHHH
Confidence 7 689988999988888999999999999999999 44433222 22222222222211 1122333333444555
Q ss_pred HHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHH-hHHHHHHhhcc-CchHHHHHHHHHHHHHHH
Q 009268 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAAL-GPLLTGFLSTQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 421 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
|.+.............+..|+ +.+|+++|+.+...++|+.+ +|.+.|.+.|. ||+..|++++++.+++++
T Consensus 358 g~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 358 GFLIYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HHHHHhHHHHHHHHHHHHcCh--------hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 554433333334455677775 88999999999999998765 79999999999 999999988888888877
Q ss_pred HHHHHhhhhhhhhh
Q 009268 499 LLSRLVIAEITEKI 512 (538)
Q Consensus 499 ~~~~~~~~~~~~~~ 512 (538)
....+.+.|+|++.
T Consensus 430 ~~~~~~~~~~~~~~ 443 (452)
T PRK11273 430 LLIVVMIGEKRHHE 443 (452)
T ss_pred HHHHHhccccchHH
Confidence 77766665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=308.82 Aligned_cols=340 Identities=16% Similarity=0.133 Sum_probs=274.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ ..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.++++++++++ +|++.+++.|++
T Consensus 39 ~~~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~ 106 (390)
T PRK03545 39 FHMQ-------TAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTVLLISRIG 106 (390)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 7888 9999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
+|++.+...+...+++.|++|+++|++++|+...+.++|..+||++++.+. ++|||+.|++.+++.++..++.+..+|+
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999888999999999999999999999999999999999999999887 5799999999998887765555555554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
.+++.+ ....+.++.+|+|.++...+..++.....+..
T Consensus 187 ~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (390)
T PRK03545 187 LPSEHS------------------------------------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTA 224 (390)
T ss_pred CCCCCc------------------------------------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 322100 00112456788888877666666666666666
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVN 413 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (538)
..+++.|+++. +|++..+++.+.+...++.++++++.|++.||+++|+.. .+..+..+....+... ..+.+..
T Consensus 225 ~~~~~~~l~~~----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--~~~~~~~ 297 (390)
T PRK03545 225 YSYIEPFVQQV----AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--ANSEWHL 297 (390)
T ss_pred HHHHHHHHHHh----cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--hchHHHH
Confidence 77888888887 699999999999999999999999999999999887644 3333333333332221 2345555
Q ss_pred HHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHH
Q 009268 414 IVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVG 492 (538)
Q Consensus 414 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~ 492 (538)
.+..++.|++.....+.....+.+..+ +.+++++|+++...++|..+||.+.|.+.|. +++..|+..+++
T Consensus 298 ~~~~~l~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~ 368 (390)
T PRK03545 298 SVLSIFWGIAIMCIGLAMQVKVLKLAP---------DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL 368 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhCC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 666777788766655555566555433 5678999999999999999999999999998 999999998888
Q ss_pred HHHHHHHHHHHh
Q 009268 493 ALIAGLLLSRLV 504 (538)
Q Consensus 493 ~~~~~~~~~~~~ 504 (538)
.+++.++.....
T Consensus 369 ~~~~~~~~~~~~ 380 (390)
T PRK03545 369 ALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHc
Confidence 888777665543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=317.62 Aligned_cols=424 Identities=18% Similarity=0.188 Sum_probs=306.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
...+.||.+..++++++.++|.||.+++.+.+.+.++.+ .++.+++..+. ........+++++ .
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~s-------~ 75 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKEN--STDLACLSAEN-------ELDNIKNPNFKWS-------G 75 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCC--CCCcccccccc-------ccccccCCCCCCC-------H
Confidence 456789999999999999999999999999998876421 11112221111 0111223357787 9
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++.++. ..+++.+++.|+++|++.+...+..
T Consensus 76 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~~~G~~~~~~~~~~ 152 (465)
T TIGR00894 76 ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---GGGIALVVFCRVIQGLAQGSVSPAT 152 (465)
T ss_pred HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---HcCchHHHHHHHHHHHhcccchhhH
Confidence 9999999999999999999999999999999999999999999988875530 1468889999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-H-hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-D-YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
..+++||+|+++|++++++...+..+|.++++++++.+. . .|||+.|++.+++.++..++.+.+.+|+|+..+...++
T Consensus 153 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 232 (465)
T TIGR00894 153 HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKF 232 (465)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHH
Confidence 999999999999999999999999999999999999887 4 39999999999988877666666666666432211000
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+++.. +...+++. .+.+...++++.+++|.+|...+..++.....+.+.+|+|.|+++.
T Consensus 233 -----~~~~i-----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 291 (465)
T TIGR00894 233 -----EKKYI-----NSSLQGQK-----------GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV 291 (465)
T ss_pred -----HHHHH-----Hhhccccc-----------CCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00000000 0111233578899999999999999999999999999999999988
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHhhccCchHHHHHHH
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATT--------AATFMYAAIPSMLLYRTYGSVSQTVNIVL 416 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (538)
+|++..++++..++..++.+++.++.|+++||+++|+.. ..+.........++.......+....+++
T Consensus 292 ----~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T TIGR00894 292 ----LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII 367 (465)
T ss_pred ----hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 799999999999999999999999999999998654321 11111111111111111112233333334
Q ss_pred HHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc----CchHHHHHHHHH
Q 009268 417 MMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ----GWDAVFIMLMVG 492 (538)
Q Consensus 417 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----g~~~~~~~~~~~ 492 (538)
+.+.+.+.+...+..... ..+..+ +.+|.+.|+.++.+.+++.++|.+.|.+.+. +|..+|.+.+++
T Consensus 368 ~~l~~~~~~~~~~~~~~~-~~~~~~--------~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~ 438 (465)
T TIGR00894 368 LTLANAVSSGPLAGVLIN-SLDLAP--------RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV 438 (465)
T ss_pred HHHHHHHhhhhhhhhhhc-hhhcCh--------hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence 444444443333333222 233333 6899999999999999999999999998875 377888888877
Q ss_pred HHHHHHHHHHH
Q 009268 493 ALIAGLLLSRL 503 (538)
Q Consensus 493 ~~~~~~~~~~~ 503 (538)
.+++.++....
T Consensus 439 ~~i~~i~~~~~ 449 (465)
T TIGR00894 439 NILCVIFYLIF 449 (465)
T ss_pred HHHHHHHeeee
Confidence 77776655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=309.48 Aligned_cols=384 Identities=19% Similarity=0.249 Sum_probs=301.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
+..+++|.++..++...+.++++....+...|.+.++ +|++ +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~s-------~ 49 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------------------------------FGLD-------V 49 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------H
Confidence 3445899999999999999999999999999999877 7888 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+..
T Consensus 50 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~ 124 (406)
T PRK11551 50 AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA-----WDFPSLLVARLLTGVGLGGALPNL 124 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
.+++.|++|+++|++++++...+..+|..+++.+++.+. ..+||+.|++.+++.++..++...++||+|++...+.++
T Consensus 125 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 203 (406)
T PRK11551 125 IALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG- 203 (406)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc-
Confidence 999999999999999999999999999999999887776 578999999988776666555666678765432211000
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (538)
+ .++.......+..+.+..+...+..++.....+....|+|.|+++.
T Consensus 204 ---~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 250 (406)
T PRK11551 204 ---K-----------------------------QRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ- 250 (406)
T ss_pred ---h-----------------------------hhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 0 0000000000111122233344445555556677788899999886
Q ss_pred cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhc
Q 009268 346 IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVN 425 (538)
Q Consensus 346 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 425 (538)
|+++.+.+...+...++.++++++.|++.||+++|+.+........+..+.+.. ..+.+...+..++.|++..
T Consensus 251 ----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~ 323 (406)
T PRK11551 251 ----GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA---APSFAGMLLAGFAAGLFVV 323 (406)
T ss_pred ----CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998877655544444333322 2344455556667777777
Q ss_pred cchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHH
Q 009268 426 GPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+..+.......+.+|+ +.++++.|+.+....+|..++|.+.|.+.+. ++...++....+.+++.++.+.
T Consensus 324 ~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 324 GGQSVLYALAPLFYPT--------QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hHHHHHHHHHHHHcch--------hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888886 8899999999999999999999999999987 5555666555555555544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=328.72 Aligned_cols=422 Identities=16% Similarity=0.167 Sum_probs=309.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
..++++|.++++++++.+...++...++.++|.+.++ +|++ .
T Consensus 160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------------------------------~gls-------~ 201 (742)
T TIGR01299 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------------------------------LCIP-------D 201 (742)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------H
Confidence 3467889999999999999999999999999998876 7777 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
.+.+++.+++.++.+++++++|+++||+|||+++++++++.+++.++++++ ++++.++++|++.|++.|+..+..
T Consensus 202 ~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa-----~s~~~llv~R~l~G~g~g~~~p~~ 276 (742)
T TIGR01299 202 SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV-----QGYGFFLFCRLLSGFGIGGAIPIV 276 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-H-------------hCchHHHHHHHHHHHHHHHHHHhhhc
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-D-------------YGWGWSFILPGASIVMGGIIVYLFLA 252 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~-------------~gwr~~f~~~~~~~~~~~~~~~~~~~ 252 (538)
.+++.|++|+++|++.++++..++.+|.++++.++..+. . .+||+.|++.+++.++ .++..+++|
T Consensus 277 ~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lP 355 (742)
T TIGR01299 277 FSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMP 355 (742)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH-HHHHHHHcC
Confidence 999999999999999999999999999999998876665 2 2589998887776555 467778899
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcccc------c---------cccccccccccC-c--ccccC---CCC----ccccch
Q 009268 253 AYPEDVGFPYANDPIPSSERLPNDEES------H---------MQKGKTAAVENN-S--GIRYG---SGS----RTSVGL 307 (538)
Q Consensus 253 ~~p~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~-~--~~~~~---~~~----~~~~~~ 307 (538)
|+|++...+++.++..+..++....+. . ......+..+.. . ....+ ..+ ..+..+
T Consensus 356 ESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (742)
T TIGR01299 356 ESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNF 435 (742)
T ss_pred CCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHH
Confidence 999986554433222211111110000 0 000000000000 0 00000 000 000123
Q ss_pred hhhhccC---chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-----------------CcCCCc--------------
Q 009268 308 FQACLIP---GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIG-----------------GEYLSV-------------- 353 (538)
Q Consensus 308 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~g~~~-------------- 353 (538)
+.+++.+ +.+.+.+.+++..+.+|++..|+|.++.+.... .++++.
T Consensus 436 ~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (742)
T TIGR01299 436 LRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDK 515 (742)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccch
Confidence 4444432 346677788888899999999999876541000 000000
Q ss_pred -------------------------------------------------------------------------------c
Q 009268 354 -------------------------------------------------------------------------------K 354 (538)
Q Consensus 354 -------------------------------------------------------------------------------~ 354 (538)
.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 595 (742)
T TIGR01299 516 FIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAY 595 (742)
T ss_pred hhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHH
Confidence 0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHH
Q 009268 355 TAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTA 434 (538)
Q Consensus 355 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 434 (538)
.......+..++.+++.++.|+++||+|||+++..+.++.+++++++... .+....+++.++.|++.++.++....+
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233456678889999999999999999999888877777766555432 233444555567777777788888889
Q ss_pred HHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHH
Q 009268 435 VSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+++.+|+ +.|++++|+.++...+|++++|++.|.+.+.+....|++.+++.++++++.+++
T Consensus 673 ~aEl~Pt--------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 673 TVELYPS--------DKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999886 889999999999999999999999998887766677777777777766655544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=305.13 Aligned_cols=383 Identities=14% Similarity=0.066 Sum_probs=270.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
++++++..+...+++++++++|+..++.+.|.+.+++..+ +.+ ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~----------------------------~~~-------~~ 60 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPS----------------------------GNT-------TT 60 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------------------CCc-------hH
Confidence 3445666777888899999999999999999998873210 222 33
Q ss_pred chh---hHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHHH
Q 009268 108 KLG---EIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG--------FYLIMQMVAG 176 (538)
Q Consensus 108 ~~g---~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~--------~l~~~r~l~G 176 (538)
+.+ .+.+..+++..++++++|+++||+|||+++..+.+++++++++++++ +++. .++++|+++|
T Consensus 61 ~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~G 135 (432)
T PRK10406 61 QLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL-----PGYETIGTWAPALLLLARLFQG 135 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHH
Confidence 333 34455555666999999999999999999999999999999999998 6653 6999999999
Q ss_pred hhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHHHHHH
Q 009268 177 LFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMGGIIV 247 (538)
Q Consensus 177 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~ 247 (538)
++.|+.++...++++|++|+++|+++.++...+...|.++++.+...+. ++|||++|++.+++.++. +..
T Consensus 136 ~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~ 214 (432)
T PRK10406 136 LSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWL 214 (432)
T ss_pred hhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999888888888887665543 479999999877766553 333
Q ss_pred HhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHH-H
Q 009268 248 YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFF-A 326 (538)
Q Consensus 248 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 326 (538)
...+||+++++.. +. ++..++++++++|+.+...+..++ .
T Consensus 215 ~~~~~e~~~~~~~--------------------------------------~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 255 (432)
T PRK10406 215 RRQLDETSQQETR--------------------------------------AL-KEAGSLKGLWRNRRAFIMVLGFTAAG 255 (432)
T ss_pred HhcCCCCchHHHh--------------------------------------hh-cccccHHHHHhhHHHHHHHHHHHHHH
Confidence 3334443321100 00 001235677888887776665554 3
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hc
Q 009268 327 KLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR-TY 405 (538)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~ 405 (538)
...++.+.+|+|.|+++. +|++..+++...+...++..++.++.|+++||++||+.+.....+.++..+.+.. ..
T Consensus 256 ~~~~~~~~~~lp~~l~~~----~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNT----AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999887 6999888888888888888888999999999999998876655543333222221 11
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhccC-ch
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLSTQG-WD 483 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~g-~~ 483 (538)
...+......+..+.++..+...+......++.+|+ +.|+++.|+.+...++ .+...|.+.+.+.+.+ +.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~--------~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~ 403 (432)
T PRK10406 332 NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA--------QVRALGVGLSYAVANALFGGSAEYVALSLKSIGMET 403 (432)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCc
Confidence 112222222222222222223334455667788886 8899999999988765 3555778777654444 66
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (538)
..+++.+++.+++.+..++
T Consensus 404 ~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 404 AFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=306.29 Aligned_cols=397 Identities=16% Similarity=0.154 Sum_probs=298.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
+...++|.++..+++....++.++..++...|.+.++ +|++ .
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------------~g~s-------~ 53 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQI-------------------------------FQAT-------Y 53 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHH-------------------------------hCcc-------h
Confidence 4456789999999999888888888899999999887 7888 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHH-HHHHHHhhhccCchh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLI-MQMVAGLFQATGWPS 185 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~-~r~l~G~~~g~~~~~ 185 (538)
++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++ ++++.+++ .|++.|++.+...+.
T Consensus 54 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~l~G~~~~~~~~~ 128 (455)
T TIGR00892 54 SETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-----SNVIELYLTAGFITGLGLAFNFQP 128 (455)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999998 88988865 578999999887777
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
..+++.++++ ++|++++++...+..+|..++|++++.+. .+|||++|++.+++.++..+..++..++.+.....+ .+
T Consensus 129 ~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~ 206 (455)
T TIGR00892 129 SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSK-SK 206 (455)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccc-cc
Confidence 8888999996 69999999999999999999999988877 579999999999887765444444333222111000 00
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+ ++ .............+. . ..+..+....+++++|.++...+..++.....+....++|.|+++.
T Consensus 207 ~--~~---~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 271 (455)
T TIGR00892 207 S--KE---GLPPDGSTKKLSKKS-----T-----AEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK 271 (455)
T ss_pred c--cc---cCCCCCccccccccc-----h-----hhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHc
Confidence 0 00 000000000000000 0 0000111113577889998888888888888888888999999876
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHHHHHHH--HHHHHHHHHhhccCchHHHHHHHHHHH
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMY--AAIPSMLLYRTYGSVSQTVNIVLMMVA 420 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (538)
|++..+++.+.++.+++.++++++.|++.||. ++++........ ..+..++... ..+.+..++..++.
T Consensus 272 -----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~~~i~~~~~ 343 (455)
T TIGR00892 272 -----GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL---AGDYTGLVIYCIFF 343 (455)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH---hchHHHHHHHHHHH
Confidence 89999999999999999999999999999973 333333322222 2222222111 23555666677788
Q ss_pred HHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHH
Q 009268 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 421 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~ 498 (538)
|++.+...+...+.+.+.+++ +.++++.|+++...++|.+++|.+.|.+.|. +|+..|++.+++.+++.+
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGA--------QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhH--------HHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 888888888888888888875 7889999999999999999999999999987 599999888877766555
Q ss_pred H
Q 009268 499 L 499 (538)
Q Consensus 499 ~ 499 (538)
.
T Consensus 416 ~ 416 (455)
T TIGR00892 416 F 416 (455)
T ss_pred H
Confidence 3
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.55 Aligned_cols=389 Identities=15% Similarity=0.113 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc--chh
Q 009268 33 YIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS--KLG 110 (538)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~--~~g 110 (538)
+.++....++++.+++|...++.+.|.+.+++ +.+. + +. ..+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~-------------------------------~~~~-~----~~~~~~~ 58 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVF-------------------------------FPGA-D----PSVQMIA 58 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------------CCCC-C----cHHHHHH
Confidence 45667778899999999999999999988773 2220 0 11 122
Q ss_pred h--HHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHH--------HHHHHHHHHhhhc
Q 009268 111 E--IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGF--------YLIMQMVAGLFQA 180 (538)
Q Consensus 111 ~--~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~--------l~~~r~l~G~~~g 180 (538)
. +.++.++++.+++++.|+++||+|||+++.++.+++++++++++++ +|++. ++++|+++|++.|
T Consensus 59 ~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~-----~~~~~~g~~a~~~l~~~R~l~G~g~g 133 (490)
T PRK10642 59 ALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI-----PSYATIGIWAPILLLLCKMAQGFSVG 133 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 2 2578889999999999999999999999999999999999999998 88864 8999999999999
Q ss_pred cCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHHHHHHHhhh
Q 009268 181 TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMGGIIVYLFL 251 (538)
Q Consensus 181 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~ 251 (538)
+.++...++++|++|+++|+++.++...+..+|..+|+.+...+. ++|||+.|++.+++.++ +++....+
T Consensus 134 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~ 212 (490)
T PRK10642 134 GEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHAL 212 (490)
T ss_pred hhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcC
Confidence 999999999999999999999999999988888888876654432 47999999997765554 45555667
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhcc-CchHHH-HHHHHHHHHH
Q 009268 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLI-PGVIPF-AFCLFFAKLV 329 (538)
Q Consensus 252 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 329 (538)
||+|++....++.++..+ +. ..+.+..++++++++ ++.+.. ....++....
T Consensus 213 ~esp~~~~~~~~~~~~~~----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (490)
T PRK10642 213 EETPAFQQHVDKLEQGDR----------------EG-----------LQDGPKVSFKEIATKHWRSLLTCIGLVIATNVT 265 (490)
T ss_pred CCChhHHHHHHhhhhhcc----------------cc-----------ccccccCCHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 887764321100000000 00 000011223444442 222222 2233445677
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCch
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
++.+..|+|.|+++. +|++..+.++......++.+++.++.|+++||+|||+.+..+.....+..+.+.......+
T Consensus 266 ~~~~~~~~p~~l~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 266 YYMLLTYMPSYLSHN----LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888889999999877 6898888888878888899999999999999999999877666544433322222111233
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHH
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFI 487 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~ 487 (538)
....++..++.|++.+...+......++.+|+ +.||++.|+.+....+++.++|.+.+++.+. ++...++
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~--------~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~ 413 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPT--------HIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAY 413 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 44444445556665555556666777777776 8899999987666778889999999998876 4555555
Q ss_pred HHHHHHHHHHHHHHH
Q 009268 488 MLMVGALIAGLLLSR 502 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~ 502 (538)
+..+..+++.+..++
T Consensus 414 ~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 414 YLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=297.10 Aligned_cols=369 Identities=13% Similarity=0.161 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhh
Q 009268 32 RYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGE 111 (538)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~ 111 (538)
.|.+...++++.+..... ..++++.|.+.+| +|+| ..+.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~-------------------------------~~~s-------~~~~g~ 48 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQA-------------------------------SGMS-------FSVAAL 48 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHH-------------------------------hCCC-------HHHHHH
Confidence 344444444443333222 6778889999887 8888 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhh
Q 009268 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG 191 (538)
Q Consensus 112 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 191 (538)
+.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++ ++++.+++.|+++|++.+...+....++.
T Consensus 49 ~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-----~~~~~ll~~r~l~Gig~~~~~~~~~~~~~ 123 (393)
T PRK09705 49 LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-----PQSALLLSSALLGGVGIGIIQAVMPSVIK 123 (393)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----cchHHHHHHHHHHHhHHHHHhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCCCCCCC
Q 009268 192 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLA-AYPEDVGFPYANDPIP 268 (538)
Q Consensus 192 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~ 268 (538)
+++| ++|+++++++..+...|..+|+.+++++.+ .+||+.+.+.++..++. ++.++... +.|+..+
T Consensus 124 ~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 192 (393)
T PRK09705 124 RRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA-LFAWWWQSAREVASSH--------- 192 (393)
T ss_pred HHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccc---------
Confidence 9997 789999999999999999999999988774 38999988766655443 22222221 1111000
Q ss_pred CCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 009268 269 SSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGG 348 (538)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (538)
+ ++ ...++.+++|+.|...+..++....++...+|+|.|+++.
T Consensus 193 ~-----------------------------~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~---- 235 (393)
T PRK09705 193 K-----------------------------TT----TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI---- 235 (393)
T ss_pred C-----------------------------CC----cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 0 00 0112345677777777777777788888999999999875
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
|++..+++...++..++.++++++.+++.||+++|+....+..+..++..++... + .+.... ..++.|++.+..+
T Consensus 236 -g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~--~~~l~g~g~g~~~ 310 (393)
T PRK09705 236 -GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-P-LQLPVL--WAMVCGLGLGGAF 310 (393)
T ss_pred -CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-c-chHHHH--HHHHHHHhccchH
Confidence 9999999999999999999999999999999999988877766655554443322 1 222222 2345577777777
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
+.......+..++ .+.+|+.+|+.+.+.++++.++|.+.|++.|. +|...|++.+++.++..++.+.+.
T Consensus 311 ~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 311 PLCLLLALDHSVQ-------PAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 7666666666543 36789999999999999999999999999998 588888887777776655554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=311.98 Aligned_cols=391 Identities=18% Similarity=0.157 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhh
Q 009268 32 RYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGE 111 (538)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~ 111 (538)
+|.++..++++++....|.+.++.++|.+.+| +|.+ .++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------------------------------l~~s-------~~~~~~ 45 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------------------------------LGAS-------GNELLW 45 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------HhHHHH
Confidence 57788999999999999999999999999988 6777 889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhh
Q 009268 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG 191 (538)
Q Consensus 112 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 191 (538)
+.+.|.+++.++++++|+++||+|||++++.+.+++++++++++++ +|++.++++|+++|+|.+...+.....+.
T Consensus 46 ~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-----~~~~~li~~r~l~G~g~~~~~~~~~~~l~ 120 (495)
T PRK14995 46 IIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-----PTASWLIATRALLAIGAAMIVPATLAGIR 120 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 99999999999999999998888888887
Q ss_pred ccc-ccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 009268 192 NWF-GKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPS 269 (538)
Q Consensus 192 ~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 269 (538)
+++ |+++|++++|+......+|..+||++++++. ++|||+.|++...+.++..++..+.+|+++++...+.+ ...
T Consensus 121 ~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d---~~g 197 (495)
T PRK14995 121 ATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLN---LGH 197 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC---hHh
Confidence 776 6789999999999999999999999999998 57999999998887777666666677765432111000 000
Q ss_pred CCCC-------CCcccccccccccc--ccc--------cCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHH
Q 009268 270 SERL-------PNDEESHMQKGKTA--AVE--------NNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYT 332 (538)
Q Consensus 270 ~~~~-------~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
.... .............. ... .......+...+++.-..+++|+|.++...+..++.....++
T Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 277 (495)
T PRK14995 198 ALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVG 277 (495)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHH
Confidence 0000 00000000000000 000 000000001111222235788999988888888888888888
Q ss_pred HHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHH
Q 009268 333 FLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTV 412 (538)
Q Consensus 333 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (538)
...++|.|+++. +|+++.++|....+..++..++.++.|++.||+++|+.+..+..+..++.+++.......+.+.
T Consensus 278 ~~~~~~~~lq~v----~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 353 (495)
T PRK14995 278 FELLMAQELQFV----HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQ 353 (495)
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 889999999998 7999999999999999999999999999999999988877776666555544433222334444
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.....++.|++.+...+.......+.+|+ +.++.+.++.++..++|+.+|+.+.|.+.+.
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPP--------EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCH--------HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888788888887775 8889999999999999999999999998764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=305.06 Aligned_cols=391 Identities=17% Similarity=0.171 Sum_probs=276.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
++.++..+......++..+.+...+++..|.+.++ +|++ .++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------------------~gls-------~~~ 72 (476)
T PLN00028 31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDN-------------------------------LNLT-------KSD 72 (476)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------cCCC-------HHH
Confidence 33345555566666777777777778888888877 7888 899
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+.. +....
T Consensus 73 ~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~-~~~~~ 146 (476)
T PLN00028 73 IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATGFIAVRFFIGFSLATF-VSCQY 146 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHhh-HHHHH
Confidence 9999999999999999999999999999999999999999999999998 89999999999999998765 44567
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH----H------hCchHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL----D------YGWGWSFILPGASIVMGGIIVYLFLAAYPEDV 258 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~----~------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 258 (538)
++++++|+++|++++++.....++|..+++.+.+.+. + .|||+.|++.+++.++.+++.+++.++.|+..
T Consensus 147 ~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~ 226 (476)
T PLN00028 147 WMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN 226 (476)
T ss_pred HHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc
Confidence 8899999999999999998888888877766555442 1 48999999999988877655555444433211
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 009268 259 GFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLP 338 (538)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
.. +..+ + .+. ++.+....+++.++++++|.+.+..++.....+.+..++|
T Consensus 227 ~~-----~~~~---~---------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 227 YR-----ELKK---S---------GTM-------------PKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIA 276 (476)
T ss_pred hh-----hHHh---c---------Ccc-------------ccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 0000 0 000 0001112345667889988887777766666777888999
Q ss_pred HHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHhhccCchHHHHH
Q 009268 339 FYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARA----TTAATFMYAAIPSMLLYRTYGSVSQTVNI 414 (538)
Q Consensus 339 ~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
.|+.+. +|++..+++.+.+...++.++++++.|+++||+++|+ ..........+..+.........+.+...
T Consensus 277 ~~l~~~----~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 352 (476)
T PLN00028 277 EYFYDR----FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI 352 (476)
T ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 999887 6999999999999999999999999999999998752 11111111111111111111122334334
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHH
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGA 493 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~ 493 (538)
+.+++.+++.+...+.......+ +.+ +.+|++.|+.+..+++|+.++|.+.+ ..+. +|+.+|++.+++.
T Consensus 353 ~~~~l~~~~~~~~~~~~~~~~~~-~~~--------~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 353 VVMILFSIFVQAACGATFGIVPF-VSR--------RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMI 422 (476)
T ss_pred HHHHHHHHHHHHhhhhhcccCcc-cCh--------hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHH
Confidence 44455555544444433333332 332 67899999998888888888887755 2223 6999999998888
Q ss_pred HHHHHHHHHHhhhh
Q 009268 494 LIAGLLLSRLVIAE 507 (538)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (538)
+++.++.++...++
T Consensus 423 ~i~~~~~~~~~~~~ 436 (476)
T PLN00028 423 IACTLPVAFIHFPQ 436 (476)
T ss_pred HHHHHHHHheeccc
Confidence 88877776664333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=303.09 Aligned_cols=388 Identities=23% Similarity=0.362 Sum_probs=297.9
Q ss_pred HHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHHHHH
Q 009268 42 AYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYS 121 (538)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~~ 121 (538)
+++.++.|+..++...|.+.++ +|++ ..+.|++.+++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~~~~~~~~~~~~~ 43 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQED-------------------------------LGLS-------AAQYGYVFSAFSWGYV 43 (399)
T ss_pred eehHHHHHHHhhhHhHHHHHHh-------------------------------hCCC-------hhhHHHHHHHHHHHHH
Confidence 3567788888999999998877 7888 8999999999999999
Q ss_pred HHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccch
Q 009268 122 VGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGL 201 (538)
Q Consensus 122 ~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 201 (538)
++.++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++
T Consensus 44 ~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 118 (399)
T TIGR00893 44 VGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118 (399)
T ss_pred HHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccc
Q 009268 202 IMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESH 280 (538)
Q Consensus 202 ~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (538)
++++......+|..+++.+++.+. +.+||+.|++.+++.++..++.++..||+|++.....++++.....+ ..
T Consensus 119 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 192 (399)
T TIGR00893 119 AVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGG------LL 192 (399)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchh------hc
Confidence 999999999999999999998776 67999999998888877666666666665543221111100000000 00
Q ss_pred cccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhh
Q 009268 281 MQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLS 360 (538)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~ 360 (538)
.+...+ ++.+.+....++.+++|+++...+..++.......+..+.|.|+++. +|.+..+++.+.
T Consensus 193 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 257 (399)
T TIGR00893 193 AEQQGK-----------GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE----RGLSILEAGFMA 257 (399)
T ss_pred cccccc-----------cccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----hcccHHHhhHHH
Confidence 000000 01222334567788899999988888988889999999999999887 699999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhHHHH--HHHHHH--HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHH
Q 009268 361 TLFDVGGIFGGIIAGYISDKLKARAT--TAATFM--YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS 436 (538)
Q Consensus 361 ~~~~~~~~~~~~~~g~l~dr~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 436 (538)
+...++.+++.++.|++.||+++|+. ...... ...+...+........+.....+.....+.+..+..+.......
T Consensus 258 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (399)
T TIGR00893 258 SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALIS 337 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 99999999999999999999999862 111111 11111111111111112222233333344444446788888888
Q ss_pred hhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C-chHHHHHHHHHHHHHHHHHH
Q 009268 437 ADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G-WDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.+|+ +.++++.|+.+.+..+|+.++|.+.|.+.|. + |+..|.+.+++.+++.+..+
T Consensus 338 ~~~~~--------~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 338 DNAPG--------NIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhcCh--------hHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 88886 8899999999999999999999999999998 6 99999888887777665554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=292.60 Aligned_cols=390 Identities=14% Similarity=0.053 Sum_probs=299.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccC-CCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCP-DPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
++-.++.+.+..+++.+.+.....++++.+.+.+ + +|+| .+
T Consensus 29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~-------------------------------~~ls-------~~ 70 (462)
T PRK15034 29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIG-------------------------------FNFT-------TD 70 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------------------cCCC-------HH
Confidence 3445678888999999999999999999888865 4 8888 99
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
|.+++.+++.+++.++.++.|++.||+|.|+++.++.++.++.+++++++.....++++.+++.|++.|++ +..++...
T Consensus 71 q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~ 149 (462)
T PRK15034 71 QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSM 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHH
Confidence 99999999999999999999999999999999999999999999998874111126899999999999998 77889999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHHHHH
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-------------------DYGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------------------~~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
..+++|+|+++||+++|+.....++|..++++++..+. ..+||.++++..++.++.+++.+
T Consensus 150 ~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~ 229 (462)
T PRK15034 150 GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAW 229 (462)
T ss_pred HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777777776655544322 12377888887777777666666
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKL 328 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+++++.++. +....+.++.+|+|+.|.+++.+++.+.
T Consensus 230 ~~~~~~~~~-------------------------------------------~~~~~~~~~vlk~~~~Wllslly~~tFG 266 (462)
T PRK15034 230 SGMNDIASS-------------------------------------------RASIADQLPVLQRLHLWLLSLLYLATFG 266 (462)
T ss_pred HhCCCcccc-------------------------------------------ccCHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 665443321 0112335678999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC-
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGS- 407 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~- 407 (538)
.+.++..++|.|+++. + +............+...+.++++|+++||+|+++.+..+.+...+....+....+.
T Consensus 267 ~fvg~s~~lp~~~~~~----~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~ 340 (462)
T PRK15034 267 SFIGFSAGFAMLAKTQ----F--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT 340 (462)
T ss_pred HHHHHHHHHHHHHHHH----c--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999886 3 33333223334567788889999999999999999888887666655443333322
Q ss_pred --chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCC-------------CcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 408 --VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGT-------------HSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 408 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
.+.+...+..+...++.+......+-.++..++. ++.....+++.|.+.|+..+.+.+|+.+-|.
T Consensus 341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~ 420 (462)
T PRK15034 341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ 420 (462)
T ss_pred cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence 2444444444444555566666666666666652 1111112246899999999999999999999
Q ss_pred HHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 473 LTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 473 ~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
+.|...+. ++...|+.+.+..++|.++.++.+.+
T Consensus 421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998877 79999999999999998888877653
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=294.87 Aligned_cols=379 Identities=18% Similarity=0.201 Sum_probs=296.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccch
Q 009268 30 TYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKL 109 (538)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 109 (538)
.+||++....++++++...+...++...|.+.++ +|++ .++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~-------------------------------~~~s-------~~~~ 44 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEY-------------------------------FNLP-------VSSM 44 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------------------------------hCCC-------HHHH
Confidence 3466677777888889988889999999999877 7888 8999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhh
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 189 (538)
+++.+.+.+++.++++++|++.||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...++
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~ 119 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----HSLALFSIAMFVLGVVSGITMSIGTFL 119 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHhhHhhccchhHH
Confidence 999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred hhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 190 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
+.|++|+++|+++++.......+|..++|.+.+.+. ..|||+.|++.+++.++..++.+ ..+.|+..+.+ +
T Consensus 120 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~--~~~~p~~~~~~----~- 192 (394)
T PRK03699 120 ITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL--FSEFPALGKHA----P- 192 (394)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH--hcCCccccccC----c-
Confidence 999999999999999999999999999998888765 36999999998887766533322 22323211000 0
Q ss_pred CCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIG 347 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (538)
++ . ++ . .++ ..++.++...+..++....++.+..|+|.|+++.
T Consensus 193 ~~---------~-------------------~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--- 235 (394)
T PRK03699 193 KA---------D-------------------KP-V----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK--- 235 (394)
T ss_pred cc---------c-------------------Cc-c----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 00 0 00 0 001 1135566677777777777888899999999887
Q ss_pred CcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccc
Q 009268 348 GEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGP 427 (538)
Q Consensus 348 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 427 (538)
+|+++.+++.+.+...++.++++++.|++.||+++|+.+.....+..+...++.. ..+.+...+..++.|++.+..
T Consensus 236 -~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~ 311 (394)
T PRK03699 236 -FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN---TDDPSHLLYAILGLGFFSSAI 311 (394)
T ss_pred -cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999998877666555443333322 233444455566778777777
Q ss_pred hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 428 YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
++...+...+..+ +.++...|......++|..++|.+.|++.|. |++..++..+++.+++.+......+-
T Consensus 312 ~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 312 YTTIITLGSQQTK---------VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHHHHHHHHcc---------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7776666655544 3345678888889999999999999999998 99999988888887776665555444
Q ss_pred hh
Q 009268 507 EI 508 (538)
Q Consensus 507 ~~ 508 (538)
++
T Consensus 383 ~~ 384 (394)
T PRK03699 383 SK 384 (394)
T ss_pred HH
Confidence 43
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=300.49 Aligned_cols=410 Identities=21% Similarity=0.411 Sum_probs=296.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++.+|.++...++.+...+.++..+....|.+.+ +|++ .+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------------------~g~s-------~~ 61 (438)
T TIGR00712 21 YKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE--------------------------------QGFS-------KG 61 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH--------------------------------cCCC-------Hh
Confidence 34457888888888999999999998888887763 4666 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.|++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++.... .++++.+.+.|++.|++.+..++...
T Consensus 62 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~ 140 (438)
T TIGR00712 62 ELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-TSSIAIMFVLLFLNGWFQGMGWPPCG 140 (438)
T ss_pred HhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999999999999999999999999999999999999998887764100 14678888999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
..+.|++|+++|++++++.+.+.++|..+++.+.+... ..+||+.|++.+++.++..++.++++||+|++...+..++
T Consensus 141 ~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 220 (438)
T TIGR00712 141 RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEE 220 (438)
T ss_pred HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchh
Confidence 99999999999999999999999999999987766543 4689999999998888876777777887765432111000
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (538)
.+.+ ..+ . ..++.+. +.+.+....+..++++.+|...+..++.....++..+++|.|+++.
T Consensus 221 ~~~~----~~~--~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 281 (438)
T TIGR00712 221 YRND----YPD--D-YNEKAEQ-----------ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV- 281 (438)
T ss_pred cccc----ccc--c-ccccccc-----------ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-
Confidence 0000 000 0 0000000 0000001112467889999888888887788888899999999987
Q ss_pred cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHhhccCchHHHHHHHHHHHHHh
Q 009268 346 IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA--IPSMLLYRTYGSVSQTVNIVLMMVAGLF 423 (538)
Q Consensus 346 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 423 (538)
+|+++.++++...+..+++++++++.|++.||+++++....+..... +..++........+.+......++.|++
T Consensus 282 ---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 358 (438)
T TIGR00712 282 ---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFL 358 (438)
T ss_pred ---cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999964432222222211 1111211111122333333344455554
Q ss_pred hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHH-HHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 424 VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGA-ALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
..+..........+..++ +.+|++.|+.+...++++ .++|.+.|.+.|. ||..++++..++.+++.+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 359 IYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred HccHHHHHHHHHHHhcCh--------hheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 333222223345566664 788999999999988875 6899999999998 999999988888877777766
Q ss_pred HHhhhh
Q 009268 502 RLVIAE 507 (538)
Q Consensus 502 ~~~~~~ 507 (538)
+..++|
T Consensus 431 ~~~~~~ 436 (438)
T TIGR00712 431 VVMIGE 436 (438)
T ss_pred HHHhhc
Confidence 655443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=291.80 Aligned_cols=337 Identities=17% Similarity=0.125 Sum_probs=254.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ +.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+..... ++++.+++.|++
T Consensus 21 ~~~s-------~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~R~l 88 (368)
T TIGR00903 21 IDVS-------KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP-----FNYEWLLACQLL 88 (368)
T ss_pred hCcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 8888 9999999999999999999999999999999988776655555544333333 689999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
+|++.+. .+.....++|++|+++|++++++...+..+|.++++++++++. ++|||+.|++.++++++..++.++.+||
T Consensus 89 ~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 89 AALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999986 4566667799999999999999999999999999999999887 6799999999999888877778888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
+|++.... .+ . ++...++++++++|.+|.+.+..++....++++
T Consensus 168 ~p~~~~~~------~~-----------------------------~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T TIGR00903 168 LPFQAAEG------FG-----------------------------F-KDAVKEFGALAGRKDLWIIGAILGFGVALFDNL 211 (368)
T ss_pred CCCCCCCC------cc-----------------------------h-HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence 76542110 00 0 000113568899999999999999999999999
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH---HHHHH-HHHHHHHHHHHHHhhccCch
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR---ATTAA-TFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 409 (538)
.+|+|.|+++. |++.. .+.......+.+.++ .++++||..|| +.... ...+.++....+. . ..+
T Consensus 212 ~~wlp~~L~~~-----g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~-~--~~~ 279 (368)
T TIGR00903 212 AIWLEAALRPA-----GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALA-F--ELN 279 (368)
T ss_pred HHHHHHHHHHC-----CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH-H--ccc
Confidence 99999999876 77754 566655555555544 47788877543 33222 2222222222221 1 122
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHH
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIML 489 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~ 489 (538)
....+.+..+.+++....++....+.++.+|+ +.||++.|+.+..+++++.++|.+.+.+.. +....|.+.
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~ 350 (368)
T TIGR00903 280 RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK--------ELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFL 350 (368)
T ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch--------hhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 33334455566676777777777888888886 889999999999999999999999887774 677778888
Q ss_pred HHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLS 501 (538)
Q Consensus 490 ~~~~~~~~~~~~ 501 (538)
++..+++.+...
T Consensus 351 ~~~~~i~~~~~~ 362 (368)
T TIGR00903 351 AILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHH
Confidence 777777666653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=288.85 Aligned_cols=332 Identities=14% Similarity=0.147 Sum_probs=259.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ +++.|+..+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|++
T Consensus 50 ~g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l 117 (394)
T PRK10213 50 LGIS-------EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----NSFSLLLIGRAC 117 (394)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHHHHHHHHHH
Confidence 7888 9999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
+|++.+...+...+++.|++|+++|++++++...+.++|..+||++++++. .+|||+.|++.+++.++..+......||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999988 5799999999887766543333333444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
.+++.+ +.....++.+++|.++...+..++.....+..
T Consensus 198 ~~~~~~------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T PRK10213 198 LPGEPS------------------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAF 235 (394)
T ss_pred CCcccc------------------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 321100 00112356778888887766666666666666
Q ss_pred HHHH-HHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHH
Q 009268 334 LYWL-PFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTV 412 (538)
Q Consensus 334 ~~~~-~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (538)
.+++ |.|.++ +|+++.+.+.+....+++.++++++.+++.||.++ +.......+.....+++... ..+.+.
T Consensus 236 ~~~~~p~~~~~-----~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~--~~~~~~ 307 (394)
T PRK10213 236 FTYIRPVYMNL-----AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW--GSDKIV 307 (394)
T ss_pred HHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 6676 555544 49999999999999999999999999999999544 43333333333322222221 234455
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHH
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMV 491 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~ 491 (538)
.....++.|++.+...+...+.+.+..+ +..+.+.++.....++|..+||.+.|.+.|. |+...+...++
T Consensus 308 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~ 378 (394)
T PRK10213 308 ATGVAIIWGLTFALVPVGWSTWITRSLA---------DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGT 378 (394)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 5566777888888878878878887775 3345667777788899999999999999998 88887777666
Q ss_pred HHHHHH
Q 009268 492 GALIAG 497 (538)
Q Consensus 492 ~~~~~~ 497 (538)
+.++..
T Consensus 379 ~~~~~~ 384 (394)
T PRK10213 379 LMLLTA 384 (394)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=294.23 Aligned_cols=371 Identities=19% Similarity=0.270 Sum_probs=290.3
Q ss_pred cccCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Q 009268 92 STAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIM 171 (538)
Q Consensus 92 ~~~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~ 171 (538)
..+++|+ ..+.|++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++.+++. ..+++.+++.
T Consensus 65 ~~~~~ws-------~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa---~~~~~~~~~~ 134 (466)
T KOG2532|consen 65 AGEYDWS-------STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA---SIGFYLLLVL 134 (466)
T ss_pred CceecCC-------HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH---HhcchhhHHH
Confidence 5568888 99999999999999999999999999999999999999999999999999872 2456688999
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-H-hCchHHHHHHHHHHHHHHHHHHh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-D-YGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~-~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
|++||++.|..+|+...+.++|.|++||++..++..++..+|.+++.+++|++. . +||+.+|++.++++++..+++++
T Consensus 135 R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 3 79999999999999999888888
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLV 329 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
+..|+|.+++...++|. +. +.+. +..+. .+++...+++++++++.+|.+.+..++.++.
T Consensus 215 ~~~d~P~~h~~is~~El-~~----I~~~-----k~~~~-----------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~ 273 (466)
T KOG2532|consen 215 FYSDSPSKHPNISEKEL-KY----IEKG-----KSEAH-----------VKKKPPVPYKAILTSPPVWAIWISAFGGNWG 273 (466)
T ss_pred HhcCCcccCCCCCHHHH-HH----HHhc-----ccccc-----------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence 88888877543211100 00 0000 00000 1122577899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH--------HHHHH-HHHHHHHHHHH
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR--------ATTAA-TFMYAAIPSML 400 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--------~~~~~-~~~~~~~~~~~ 400 (538)
.+.+..++|.|+++. +|++..+.|++.++..+.+.+..+++|.++||+.+| |.+-. +....++.++.
T Consensus 274 ~~~l~~y~PtY~~~V----L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~ 349 (466)
T KOG2532|consen 274 FYLLLTYLPTYLKEV----LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLV 349 (466)
T ss_pred HHHHHHHhhHHHHHH----hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHe
Confidence 999999999999999 899999999999999999999999999999998652 22222 22222222222
Q ss_pred HHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh-c
Q 009268 401 LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS-T 479 (538)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~-~ 479 (538)
+ .+....+.+. .+.++....+..+...........+..+ +..+..+|+.+.+..+.+.++|.+.|.+. +
T Consensus 350 l-~~~~~~~~~~-a~~~l~~~~~~~g~~~~Gf~~~~~~~ap--------q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~ 419 (466)
T KOG2532|consen 350 L-AFTSDEHRLL-AVILLTIAIGLSGFNISGFYKNHQDIAP--------QHAGFVMGIINFVGALAGFIAPLLVGIIVTD 419 (466)
T ss_pred e-eecCCCcchH-HHHHHHHHHHHcccchhhhHhhhhhccc--------hHHHHHHHHHHHHHHHHHHHHHHheeeEeCC
Confidence 2 2222222222 2223333333334333333333333233 88899999999999999999999999998 4
Q ss_pred c---CchHHHHHHHHHHHHHHHHHHHHhhhh
Q 009268 480 Q---GWDAVFIMLMVGALIAGLLLSRLVIAE 507 (538)
Q Consensus 480 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (538)
. .|+.+|.+.+++.+++.+++.++...+
T Consensus 420 ~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e 450 (466)
T KOG2532|consen 420 NTREEWRIVFLIAAGILIVGNIIFLFFGSGE 450 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence 3 899999999999999887776664433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=296.66 Aligned_cols=367 Identities=16% Similarity=0.135 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHH
Q 009268 38 ITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFL 117 (538)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~ 117 (538)
..++.....+..+..+++..|.+.++ +|++ .++.|++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~s-------~~~~g~~~s~~~ 48 (377)
T TIGR00890 7 VGTVIMCFTSGYVYTWTLLAPPLGRY-------------------------------FGVG-------VTAVAIWFTLLL 48 (377)
T ss_pred HHHHHHHHHhhHHhhhhhHHHHHHHH-------------------------------hCCC-------HHHHHHHHHHHH
Confidence 33444444455577788899999887 7888 999999999999
Q ss_pred HHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccC
Q 009268 118 ACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKR 197 (538)
Q Consensus 118 l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 197 (538)
+++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+..++.....+.+++| +
T Consensus 49 ~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 122 (377)
T TIGR00890 49 IGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA-----DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D 122 (377)
T ss_pred HHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence 9999999999999999999999999999999999999998 999999999999999999888888888999997 5
Q ss_pred ccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCc
Q 009268 198 KRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPND 276 (538)
Q Consensus 198 ~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 276 (538)
+|++++++...+.++|..+++++.+.+. ..|||+.|++.+++.++..++.++++++++++...+ + +
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~------- 189 (377)
T TIGR00890 123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT-N-----I------- 189 (377)
T ss_pred ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc-C-----c-------
Confidence 8999999999999999887655555444 679999999999888887666666665544321110 0 0
Q ss_pred cccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchh
Q 009268 277 EESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTA 356 (538)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~ 356 (538)
+.+.+....++.+++|.++...+..++..........+.+.|.++. |.+..+.
T Consensus 190 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 242 (377)
T TIGR00890 190 ----------------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSL-----GLSDGFL 242 (377)
T ss_pred ----------------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-----CCCHHHH
Confidence 0000111245677888888777777766666666667777787665 8888888
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHH
Q 009268 357 GNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS 436 (538)
Q Consensus 357 g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 436 (538)
+.+.+...++.++++++.|++.||++||+.+..+.....++.+++... ...+........++.|++.+...+.......
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 321 (377)
T TIGR00890 243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-PMLNDVLFLATVALVFFTWGGTISLFPSLVS 321 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhccchhccHHHHH
Confidence 999999999999999999999999999998877776666655444332 1122223334455667777766666777777
Q ss_pred hhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 437 ADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
+.+++ +.++++.|+.+....+|..++|.+.|.+.+. ||+..|.+.+++.+++.
T Consensus 322 ~~~~~--------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 322 DIFGP--------ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhhh--------hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 87775 7899999999999999999999999999988 99999988777666543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=296.84 Aligned_cols=378 Identities=14% Similarity=0.129 Sum_probs=277.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
+++++..++.++++++.+.+++...+...|.+.++ +|++ +.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------------~~~s-------~~~ 54 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKAD-------------------------------LGLT-------DME 54 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------------------hCCC-------HHH
Confidence 35677778888899999999999999999998877 7888 889
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.+++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+..++....
T Consensus 55 ~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~ 129 (426)
T PRK12307 55 GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----SGVIMLTLSRFIVGMGMAGEYACAST 129 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
++.|++|+++|++++++...+..+|.++++.+.+.+. .+|||+.|++..+..++ .+......||++++.+.+.+
T Consensus 130 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~---- 204 (426)
T PRK12307 130 YAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLS---- 204 (426)
T ss_pred HHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhh----
Confidence 9999999999999999999999999999998888776 57999999885433222 12211122322211100000
Q ss_pred CCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCL---FFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 344 (538)
.+ . +..+. ..+.....+++.+++|.++...... +......+.+..++|.|+++.
T Consensus 205 ~~---------~---~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T PRK12307 205 GK---------G---KHSQS-----------AWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE 261 (426)
T ss_pred cc---------c---ccccc-----------chhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 0 00000 0001122456778888776543332 222233345677899999886
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhh
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFV 424 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 424 (538)
|+++.+.+.+.+...++.++++++.|++.||+++|+....+..+..+..+.+... ...+........+..++..
T Consensus 262 -----g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 335 (426)
T PRK12307 262 -----GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQDNYLLLGACLFGLMATN 335 (426)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999988877766655544333322 1222222222222222222
Q ss_pred ccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHH
Q 009268 425 NGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMV 491 (538)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~ 491 (538)
.+..+.....+.+.+|+ +.+|++.|+.+....+++.++|.+.|++.+. ++....++...
T Consensus 336 ~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 336 VGVGGLVPKFLYDYFPL--------EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred ccHhHHHHHHHHHhCcH--------HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33344555667777775 8899999999999999999999999999988 76554443333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=295.95 Aligned_cols=388 Identities=16% Similarity=0.213 Sum_probs=287.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++++|+.+..++++++.+++++...+.+.|.+.++ +|++ ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------------------~~~s-------~~ 47 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGE-------------------------------FGLT-------TV 47 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------hh
Confidence 467889999999999999999999999999999877 7888 89
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.|++.+++.++..+++++.|+++||+|||++++.+.++.++++++++++ ++++.+++.|++.|++.+...+...
T Consensus 48 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~ 122 (405)
T TIGR00891 48 DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA-----PGYITMFIARLVIGIGMGGEYGSSA 122 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hC--chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YG--WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~g--wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
+++.|++|+++|++++++...+..+|.++++.+++.+.+ .+ ||+.|++.++..++ .++....+||++++.+.+.++
T Consensus 123 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 201 (405)
T TIGR00891 123 AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGK 201 (405)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhh
Confidence 999999999999999999999999999999999888773 45 99999886655444 344455566654322111000
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPG--VIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
++..+ ...+.. ..++.... ..+......++..+.+. +....+...+.+........++|.|+.
T Consensus 202 ~~~~~---~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (405)
T TIGR00891 202 ALVRT---MVDILY-----GGEHRIAN-------IVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLK 266 (405)
T ss_pred hhhhh---HHHHHh-----ccchhhhh-------hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 00000 000000 00000000 00000000111111111 222233333444455566778899998
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
+. +|++..+++.+.+...++.++++++.|++.||+++|+.+..+.....+..+.+... ..+.+...+..++.++
T Consensus 267 ~~----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 340 (405)
T TIGR00891 267 AD----LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GANVAVLGLGLFFQQM 340 (405)
T ss_pred HH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHH
Confidence 87 69999999999999999999999999999999999998877665543333222221 2344444444456666
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C-chHHHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G-WDAVFIM 488 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~~ 488 (538)
+.....+.....+.+..|+ +.+|+++|+.+.+.++|+.++|.+.|.+.|. | |+.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPT--------DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHccchhhHHHHHhhhCCc--------chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 6666677777888888775 8899999999999999999999999999998 6 7766554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=290.15 Aligned_cols=385 Identities=14% Similarity=0.153 Sum_probs=274.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceecc-ccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 30 TYRYIILLITFIAYACYHASRKPSSIVKSV-LCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
.+++.++...+++++++++|...++.+.|. +.+++- -+++ +.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----------------------------~~~~-------~~- 60 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFF-----------------------------PQVS-------PA- 60 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------CCCC-------cH-
Confidence 455677888889999999999999988764 333310 0233 33
Q ss_pred hhhHH-----HHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHH
Q 009268 109 LGEID-----LAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG--------FYLIMQMVA 175 (538)
Q Consensus 109 ~g~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~--------~l~~~r~l~ 175 (538)
.+++. ++.+++..+++++.|+++||+|||++++.+.+++++++++++++ ++++ .++++|+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~R~l~ 135 (438)
T PRK09952 61 MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL-----PSFSTIGWWAPVLLVTLRAIQ 135 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 35543 35566778999999999999999999999999999999999998 8876 588999999
Q ss_pred HhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHHHHH
Q 009268 176 GLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMGGII 246 (538)
Q Consensus 176 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~ 246 (538)
|++.|..++....++.|++|+++|++..+....+..+|.+++..+...+. ++|||+.|++.+++.++ .+.
T Consensus 136 G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~ 214 (438)
T PRK09952 136 GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALW 214 (438)
T ss_pred HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999877766554 36999999987776544 233
Q ss_pred HHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHH-HHHH
Q 009268 247 VYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAF-CLFF 325 (538)
Q Consensus 247 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 325 (538)
.....||+|++...+.+.+ +.+.+....+.++++|+.+...+ ..++
T Consensus 215 l~~~~~es~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 261 (438)
T PRK09952 215 VRNGMEESAEFEQQQHEQA---------------------------------AAKKRIPVIEALLRHPGAFLKIIALRLC 261 (438)
T ss_pred HHHhCCCChhHHHHHhhcc---------------------------------cccccCCHHHHHHHchHHHHHHHHHHHH
Confidence 3334455543221100000 00000001123556666665544 4455
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
..+..+....|.|.|+++. +|++......+....++..+++.++.|+++||++||+.+..+..+..+....+....
T Consensus 262 ~~~~~~~~~~~~~~y~~~~----~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 337 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQN----LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL 337 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888999999877 688877655555566777788889999999999999987766555444332222211
Q ss_pred -cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHh-HHHHHHhHHHHHHhhcc---
Q 009268 406 -GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG-SVGAALGPLLTGFLSTQ--- 480 (538)
Q Consensus 406 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~~~~~g~l~~~--- 480 (538)
.....+..+...++.+++.+...+....++.+.+|. +.|+++.|+.+... .+++.++|.+.+++.+.
T Consensus 338 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--------~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~ 409 (438)
T PRK09952 338 EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA--------SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGG 409 (438)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--------chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 122233333344555666666667777888888886 78888888866554 48999999999999884
Q ss_pred CchHHHHHHHHHHHHHHHHHHH
Q 009268 481 GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 481 g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+|...+...+++.+++.+..+.
T Consensus 410 ~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 410 SWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777776665543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=272.79 Aligned_cols=384 Identities=19% Similarity=0.194 Sum_probs=325.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
++.+++.+.+..+++.++++....++++.+.+.++ +|+| +.|
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~-------------------------------~~LS-------~~q 50 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSD-------------------------------FGLS-------EGQ 50 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------------------------cCCC-------HHH
Confidence 34456677888889999999999999999999866 8999 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.+++.++..+...+..++.|.+.||+|.|++..++.++..+.++..+++.. .+++|++++.+.+.|++ |+.+.....
T Consensus 51 ~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~--~~~~~~ll~~gll~G~~-GasFav~m~ 127 (417)
T COG2223 51 KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT--YPSTWQLLVIGLLLGLA-GASFAVGMP 127 (417)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc--CCchHHHHHHHHHHhcc-cceehcccc
Confidence 999999999999999999999999999999999999999999999998822 24457999999999997 677788899
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC---chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG---WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
.++.|||++++|.++|+.. ..++|..+..+++..+. ..| ||.+..+..+..++..++.++.+.|.|+.....
T Consensus 128 ~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~--- 203 (417)
T COG2223 128 NASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV--- 203 (417)
T ss_pred cccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc---
Confidence 9999999999999999999 89999999888888877 567 999999988888888888889888887652221
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccc-cchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTS-VGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQ 343 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (538)
++.. .+++.++++|+.|.+++.++.....+.++..++|.|+++
T Consensus 204 ------------------------------------~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~ 247 (417)
T COG2223 204 ------------------------------------KPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT 247 (417)
T ss_pred ------------------------------------cccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 446778889999999999999999999999999999999
Q ss_pred cccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC----chHHHHHHHHHH
Q 009268 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGS----VSQTVNIVLMMV 419 (538)
Q Consensus 344 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 419 (538)
+ ||.++.++|.....+.+.+.+.++++|+++||+|.+|.+...+..++++..++...... .+........+.
T Consensus 248 ~----fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 248 Q----FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred h----cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 9 89999999999999999999999999999999999999888888888877776553311 334455555556
Q ss_pred HHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHH
Q 009268 420 AGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 420 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~ 497 (538)
.+++.+......+..++..++ ++.|.+.|+..+++.+|+..-|...|...+. .+...|+++..+.+++.
T Consensus 324 l~~~~G~GnGsvfk~Ip~if~---------~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~ 394 (417)
T COG2223 324 LFVFAGLGNGSVFKMIPVIFP---------KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL 394 (417)
T ss_pred HHHHhccCcchheeechHHHH---------hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 666666666667777766665 6779999999999999999999999999998 59999999999998888
Q ss_pred HHHHHHhhh
Q 009268 498 LLLSRLVIA 506 (538)
Q Consensus 498 ~~~~~~~~~ 506 (538)
++....+.+
T Consensus 395 v~~~~~y~r 403 (417)
T COG2223 395 VLTWALYAR 403 (417)
T ss_pred HHHHHHHHh
Confidence 777666543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=303.42 Aligned_cols=427 Identities=15% Similarity=0.102 Sum_probs=288.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCC
Q 009268 26 WSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHG 105 (538)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 105 (538)
.+..++++.++.++.++.+...+|...++.+.|.+..+...+ +...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~--------------------------~~~~~------- 54 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHG--------------------------KGPLP------- 54 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------cccch-------
Confidence 556778888888999999999999999999888776431000 01223
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchh------HHHHHHHHHHHHhhh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHA------FGFYLIMQMVAGLFQ 179 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~------~~~l~~~r~l~G~~~ 179 (538)
..+.+++.+.+.+++.++++++|+++||+|||+++.++.++..++.++++++ ++ ++.+++.|+++|++.
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS-----PGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-----cCcccchHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999999999999999999999998886 44 789999999999999
Q ss_pred ccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH------------------------HhCchHHHHH
Q 009268 180 ATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL------------------------DYGWGWSFIL 235 (538)
Q Consensus 180 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~------------------------~~gwr~~f~~ 235 (538)
|...+....+++|++|+++|++++++.+....+|.++++.++..+. +++||+.|.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 9999999999999999999999999999999999999998876553 1479999988
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCC-CCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhcc-
Q 009268 236 PGASIVMGGIIVYLFLAAYPEDVGFPYANDP-IPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLI- 313 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (538)
.++.+++. ++..+++||+|++...++++++ ..+...+..+.+.+ + +.++..+.++ +.+....++++++++
T Consensus 210 ~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 281 (502)
T TIGR00887 210 GAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE-A-EPDEVEKAST-----AVEVPKASWSDFFTHF 281 (502)
T ss_pred HHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc-c-Ccccccchhc-----cccchhhhHHHHHHHH
Confidence 77766654 5566788999998544333221 11100000000000 0 0000000000 000011235555542
Q ss_pred --Cch----HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhh------------hhhhhhhhhhhHHHHHH
Q 009268 314 --PGV----IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGN------------LSTLFDVGGIFGGIIAG 375 (538)
Q Consensus 314 --~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~g 375 (538)
++. +......+...+.+++...+.|.++++. |++...++. ......++.+++.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 356 (502)
T TIGR00887 282 FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI-----GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-----cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1122333444556677778889999876 776543221 12334456777889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHH
Q 009268 376 YISDKLKARATTAATFMYAAIPSMLLYRTYGS-VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALAT 454 (538)
Q Consensus 376 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 454 (538)
+++||+|||+.+..+..+..++.+++...... ..........+...++..+..+....+..|.+|+ +.|++
T Consensus 357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~--------~~R~~ 428 (502)
T TIGR00887 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT--------RYRST 428 (502)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch--------hHHHH
Confidence 99999999998887776666555444332111 1111111111111222233445555666777776 89999
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHhhcc-----------CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 009268 455 VTAIIDGTGSVGAALGPLLTGFLSTQ-----------GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIR 513 (538)
Q Consensus 455 ~~g~~~~~~~~g~~i~~~~~g~l~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (538)
+.|+.+.+..++++++|.+.+.+.+. ++...|++.+++.+++.++. ++. +|++++..
T Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~l-pEt~~~~l 496 (502)
T TIGR00887 429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLI-PETKGKSL 496 (502)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEe-ccCCCCCH
Confidence 99999999999999999999999873 34556777777777665544 333 45555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=293.01 Aligned_cols=372 Identities=26% Similarity=0.483 Sum_probs=285.2
Q ss_pred HHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHHHH
Q 009268 41 IAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACY 120 (538)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~ 120 (538)
++++.++.++..++...|.+.++ +|++ ..+.|++.+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~g~~~~~~~~~~ 43 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEE-------------------------------IGLS-------KTDLGLLLSSFSIAY 43 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHH-------------------------------hCCC-------HhHHHHHHHHHHHHH
Confidence 45778889999999999999877 7888 899999999999999
Q ss_pred HHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccc
Q 009268 121 SVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRG 200 (538)
Q Consensus 121 ~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 200 (538)
.+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+
T Consensus 44 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~ 118 (379)
T TIGR00881 44 GISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118 (379)
T ss_pred HhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe
Confidence 9999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhHhHHH-HHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q 009268 201 LIMGVWNAHTSVGNISGS-LLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEE 278 (538)
Q Consensus 201 ~~~~~~~~~~~~g~~ig~-~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 278 (538)
+++++...+..+|..+++ .+++.+. ..+||+.|++.+++.++..++.+++.||+|+....++.+++..++. +
T Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 192 (379)
T TIGR00881 119 TWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEP---D--- 192 (379)
T ss_pred eeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCccccc---c---
Confidence 999999999999999999 4665555 5799999999888887776777777777655432211111100000 0
Q ss_pred cccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhh
Q 009268 279 SHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGN 358 (538)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~ 358 (538)
.+. +.+++ +.+......++.+++|.++.+.+..++.......+..+.|.|+.+. +|+++.+++.
T Consensus 193 ~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~ 256 (379)
T TIGR00881 193 GDA-EKKEE-----------ELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQE----KGFSKEKASW 256 (379)
T ss_pred ccc-ccccc-----------cccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHH
Confidence 000 00000 1111223346678899999888888888888888999999999887 6999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhHHHH-HH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHH
Q 009268 359 LSTLFDVGGIFGGIIAGYISDKLKARAT-TA-ATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS 436 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 436 (538)
..+...++.++++++.+++.||..+++. .. ..........+.........+.+...+..++.|+...+..+.......
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIAS 336 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999998743332 22 211111122222222111233444455556667665555555666777
Q ss_pred hhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHH
Q 009268 437 ADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAV 485 (538)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~ 485 (538)
+.+|+ +.+|++.|+.+....+|+.++|.+.|.+.|. ||+..
T Consensus 337 ~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 337 ELAPK--------KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HhcCc--------chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 77775 8899999999999999999999999999998 87654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.98 Aligned_cols=366 Identities=13% Similarity=0.124 Sum_probs=274.1
Q ss_pred HHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHH
Q 009268 39 TFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLA 118 (538)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l 118 (538)
..+..+.....+......+|.+.+| +|++ .++.|++.+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------~g~s-------~~~~g~~~s~~~~ 49 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHD-------------------------------VGIS-------IPAAGHMISYYAL 49 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHH-------------------------------cCCC-------HHHHhHHHHHHHH
Confidence 3344444555555666678888877 7888 8899999999999
Q ss_pred HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCc
Q 009268 119 CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRK 198 (538)
Q Consensus 119 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 198 (538)
++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+....++.|++++++
T Consensus 50 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 50 GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 999999999999999999999999999999999999998 999999999999999999888888899999999999
Q ss_pred cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q 009268 199 RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDE 277 (538)
Q Consensus 199 r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
|++++++...+..+|..+||++++++. .+|||+.|++.+++.++..+..++.+||.++..+.
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~----------------- 187 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG----------------- 187 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-----------------
Confidence 999999999999999999999998887 57999999999887777655555566654321000
Q ss_pred ccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhh
Q 009268 278 ESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAG 357 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g 357 (538)
+. ....+.++++..+...+..++.....+....+++.|+.+. +|+++.+.+
T Consensus 188 ---------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~ 238 (382)
T PRK10091 188 ---------------------GL----REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI----SGFSETSMT 238 (382)
T ss_pred ---------------------CH----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHH
Confidence 00 0012445667677665555555555555566777788776 699999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHh
Q 009268 358 NLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSA 437 (538)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 437 (538)
++.+...++.++++++.+++.||+++|+....+..+..++.+++.... ++.+...+..++.+++..+..++......+
T Consensus 239 ~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (382)
T PRK10091 239 FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG--GMKTASLIFAFICCAGLFALSAPLQILLLQ 316 (382)
T ss_pred HHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999888877766655544433221 223333444444455444444433333333
Q ss_pred hcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 438 DLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 438 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
..++ .+.++.+ ..+....+|.++||.+.|.+.|. +|+..+...+++.++.........
T Consensus 317 ~~~~-------~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 317 NAKG-------GELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred hCCc-------chHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 3322 2444543 34667889999999999999995 899888887766666555544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=285.58 Aligned_cols=360 Identities=13% Similarity=0.005 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
++..+.....+.+..+..++....+.+..|.+.++ +|++ ..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~s-------~~~ 49 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------------------------------FNAG-------AEW 49 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------------------------------hCCC-------HHH
Confidence 45666777777888888888888888888888777 7787 889
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.++..+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~ 124 (406)
T PRK15402 50 VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----QSIEQFTLLRFLQGIGLCFIGAVGYA 124 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHhHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 89999999999999999988889999
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
.+.|++|+++|.+++++......+|..+||.+++.+. +.+||+.|++.+++.++..+..++..||++++...+
T Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 198 (406)
T PRK15402 125 AIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK------ 198 (406)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc------
Confidence 9999999999999999999888899999999998887 479999999988887776555555555543211000
Q ss_pred CCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIG 347 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (538)
. ..++...+.++++++|+++...+..++..........+.|.|+.+.
T Consensus 199 -~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--- 245 (406)
T PRK15402 199 -L-----------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG--- 245 (406)
T ss_pred -c-----------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---
Confidence 0 0001122346778899988877777777666667777789998877
Q ss_pred CcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHhhc
Q 009268 348 GEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY--GSVSQTVNIVLMMVAGLFVN 425 (538)
Q Consensus 348 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~ 425 (538)
+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++.... ...+.++..+..++.|++.+
T Consensus 246 -~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 324 (406)
T PRK15402 246 -EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIG 324 (406)
T ss_pred -hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 699999999888878888999999999999999999988777665555444443321 12234445556667777766
Q ss_pred cchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 426 GPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
...+....... ..++ +.+|++.++.+....++..+|+.+.+.+.+.
T Consensus 325 ~~~~~~~~~~~-~~~~--------~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 325 LANAGLYRLTL-FSSD--------VSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHhhhHHHHHh-hhcc--------ccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 65555444432 2222 6789999999999999999999999999888
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=288.51 Aligned_cols=359 Identities=11% Similarity=0.051 Sum_probs=252.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchh
Q 009268 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLG 110 (538)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g 110 (538)
.|++.....+++.+.+++|+..++++.|.+.+| ++++ ..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------------------------------~~~~-------~~~~~ 53 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKT-------------------------------FFPA-------GNEFA 53 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------CCchH
Confidence 455678889999999999999999999999988 6666 55544
Q ss_pred hH-HHHH-----HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHHHHHH
Q 009268 111 EI-DLAF-----LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG--------FYLIMQMVAG 176 (538)
Q Consensus 111 ~~-~s~~-----~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~--------~l~~~r~l~G 176 (538)
.+ .+.. .++..+++++.|+++||+|||++++.+.+++++++++++++ ++++ .+++.|+++|
T Consensus 54 ~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~l~~~R~l~G 128 (434)
T PRK15075 54 SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFV-----PGYATIGLAAPLLVLLGRLLQG 128 (434)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 33 3322 23334788999999999999999999999999999999998 7876 4689999999
Q ss_pred hhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHHHHHH
Q 009268 177 LFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMGGIIV 247 (538)
Q Consensus 177 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~ 247 (538)
++.+...+....+++|++|+++|++++++...+..+|..+++.+++.+. ++|||++|++..+.. + .
T Consensus 129 ~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~----~ 203 (434)
T PRK15075 129 FSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-P----F 203 (434)
T ss_pred ccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-H----H
Confidence 9999999999999999999999999999999999898888888877652 479999999754332 1 1
Q ss_pred HhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH-HHHHHHH
Q 009268 248 YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF-AFCLFFA 326 (538)
Q Consensus 248 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 326 (538)
.++.++.+++.....+ .+ ++.+....++...++++.+.. .+..++.
T Consensus 204 ~~~~~~~~~e~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (434)
T PRK15075 204 IFLIRRSLEETEEFLA----RK-----------------------------HRPSMREIFRSLAANWRIVLAGMLMVAMT 250 (434)
T ss_pred HHHHHHhcCCCHHHHH----hh-----------------------------hccccccHHHHHHHhHHHHHHHHHHHHHH
Confidence 1222222211000000 00 000000112233444444433 2333445
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-Hhhc
Q 009268 327 KLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLL-YRTY 405 (538)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~ 405 (538)
...++....|.|.|+++. +|++..++++...+..++.+++.++.|+++||++||+....+.....+..... ....
T Consensus 251 ~~~~~~~~~~~p~~l~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTV----LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777889999999987 69999999988888899999999999999999999988776544433222211 1111
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhH-HHHHHhHHHHHHhhcc-Cc
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS-VGAALGPLLTGFLSTQ-GW 482 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~-g~ 482 (538)
...+.........+.+++.+...+.......+.+|+ +.|+++.|+.+.+.. +++.++|.+.|.+.|. ++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~--------~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 327 AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA--------EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC--------CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 122222222333444555555555556677788776 778898998655555 4688899999999997 64
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=291.42 Aligned_cols=391 Identities=12% Similarity=0.098 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHH
Q 009268 36 LLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLA 115 (538)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~ 115 (538)
+..++++++....+...++...|.+.++ +|++ ..+.|++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------------------~g~s-------~~~~~~~~~~ 53 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQS-------------------------------LGES-------PLHMHMVIVS 53 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------------------hCcC-------HHHHHHHHHH
Confidence 3445567777778877888888988877 7888 8899999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccc
Q 009268 116 FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFG 195 (538)
Q Consensus 116 ~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 195 (538)
+.++..++.+++|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|
T Consensus 54 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~ 128 (471)
T PRK10504 54 YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVP 128 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998888 899999999999999999999999999999999
Q ss_pred cCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC-------
Q 009268 196 KRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI------- 267 (538)
Q Consensus 196 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------- 267 (538)
+++|++++++.....++|..+||.+++.+. +.|||+.|++..++..+..++.....|+.+..... .+....
T Consensus 129 ~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~ 207 (471)
T PRK10504 129 REQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGM 207 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHH
Confidence 999999999999999999999999999887 57999999998877666555555544443221110 000000
Q ss_pred ------CCCCCCCCccccccccc-cccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009268 268 ------PSSERLPNDEESHMQKG-KTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFY 340 (538)
Q Consensus 268 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
....+............ .-..........+++...++....+++|||.++...+..++..........+.|.|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (471)
T PRK10504 208 ATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVF 287 (471)
T ss_pred HHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 00000000000000001111112357899999888888888877777777888999
Q ss_pred hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 009268 341 LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVA 420 (538)
Q Consensus 341 l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (538)
++.. +|.++.++++......++.+++.++.+++.||+++|+.+..+..+..+...++.......+.+......++.
T Consensus 288 ~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (471)
T PRK10504 288 LQIG----LGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQ 363 (471)
T ss_pred HHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 9876 699999999999988888888899999999999999998877776666555544322222333333445566
Q ss_pred HHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-Cc
Q 009268 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GW 482 (538)
Q Consensus 421 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 482 (538)
|++.+..++.......+.+++ +.+|.++|+.++...+|..+|+.+.|.+.+. ++
T Consensus 364 g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 364 GMVNSTRFSSMNTLTLKDLPD--------NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCH--------HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777777787787775 7889999999999999999999999999886 55
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=294.14 Aligned_cols=405 Identities=15% Similarity=0.181 Sum_probs=277.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
++++|..+..++++++.+.++....+...|.+.++ +|++ ..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------------~~~s-------~~~ 56 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE-------------------------------FGLT-------TVQ 56 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------HHH
Confidence 45678888899999999999999999999998877 7888 889
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|++.|++.+...+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~ 131 (496)
T PRK03893 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----PGYWTLFIARLVIGMGMAGEYGSSAT 131 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
++.|++|+++|++++++...+..+|..++|.+++.+. +++||+.|++.++. ++..+.....+||.+++...+++ .
T Consensus 132 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~---~ 207 (496)
T PRK03893 132 YVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFALWLRKNLPEAEDWKEKHAG---K 207 (496)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHhCCCchhhhhhccc---c
Confidence 9999999999999999999999999999999998887 57999999874433 33223333334443322111000 0
Q ss_pred CCCCCCCCccccccccccccccccCc------ccccCCCCccccch-----------------hhh--hccCchHHHHHH
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNS------GIRYGSGSRTSVGL-----------------FQA--CLIPGVIPFAFC 322 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~ 322 (538)
.+ ..+..+.....+........ .............+ .+. .+.+......+.
T Consensus 208 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (496)
T PRK03893 208 AP----VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVV 283 (496)
T ss_pred cc----chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 00 00000000000000000000 00000000000000 000 000001111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009268 323 LFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLY 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 402 (538)
.+......+....++|.|+++. +|++..+++.+.+...++.+++.++.|++.||+++|+.+..+..+..+..+.+.
T Consensus 284 ~~~~~~~~~~~~~~lp~~l~~~----~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 359 (496)
T PRK03893 284 VLFAFLYSWPIQALLPTYLKTD----LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF 359 (496)
T ss_pred HHHHHhccchHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 1111112223567899999766 599999999999999999999999999999999999887766655444433332
Q ss_pred hhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C
Q 009268 403 RTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G 481 (538)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g 481 (538)
. ....+.+......++.++...+..+.....+.+.+|+ +.+|+++|+.+....+|+.++|.+.|.+.|. |
T Consensus 360 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 360 A-IGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT--------EQRAAGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred h-ccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH--------HHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 2 1222333333333333333334455666677777775 7899999999999999999999999999998 8
Q ss_pred chHHHHHHHHHHHHHH
Q 009268 482 WDAVFIMLMVGALIAG 497 (538)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (538)
+...+...+++..+..
T Consensus 431 ~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 431 LGTALASLSFSLTFVV 446 (496)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8887766555444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=286.45 Aligned_cols=388 Identities=32% Similarity=0.493 Sum_probs=279.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccce-eccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIV-KSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.|..+.++..++..++..+.|+.+++.. +..+.+| .++. ..
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed-------------------------------l~~~-------~~ 81 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED-------------------------------LKLV-------GN 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc-------------------------------cchh-------hh
Confidence 3445566666777777777777665543 2222233 4555 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.|.+.++++++++++.+++|.+.||++..+.+....+++++..++.+.. +|++.+++.|++.|+.+++.+|...
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----~s~~~~ialr~llGl~es~~wP~~~ 156 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----HSFPGLIALRFLLGLFESGGWPGVV 156 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhcccchHHH
Confidence 99999999999999999999999999999999999999999998888887 9999999999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-------DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF 260 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 260 (538)
.+++.||.++||+..++++.+..++|.++|++++..+. ..||||.|++.++++++.+++.++++|+.|.+...
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f 236 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF 236 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc
Confidence 99999999999999999999999999999999998853 35899999999999999999999999999986532
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009268 261 PYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFY 340 (538)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
..+++ +....++.+.. .... ..++.++..+++.+++|++|...++.++.....+++.+|+|.|
T Consensus 237 l~~~e------k~~~~~~~~~~-~~~~----------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~ 299 (495)
T KOG2533|consen 237 LTDEE------KELVVERLRES-PSGG----------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLY 299 (495)
T ss_pred cchHH------HHHHHHHHHhc-cCCC----------cccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHH
Confidence 21111 00000000000 0000 0112466778999999999999999999999999999999999
Q ss_pred hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHH
Q 009268 341 LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK----LKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVL 416 (538)
Q Consensus 341 l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (538)
+.+. .|++..++..+..+..++++++.+++|+++|| ..+|........+..+......... .........
T Consensus 300 l~~~----~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~ 373 (495)
T KOG2533|consen 300 LKSN----GGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGA 373 (495)
T ss_pred HHcC----CCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHH
Confidence 9995 58999999999999999999999999999999 5555555555555444443332221 222222332
Q ss_pred HHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH-HHhhcc-CchHHHHHH
Q 009268 417 MMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT-GFLSTQ-GWDAVFIML 489 (538)
Q Consensus 417 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~-g~l~~~-g~~~~~~~~ 489 (538)
......+.....+......+....++ .+.. +..+........++.++|.+. +..... ++...|...
T Consensus 374 ~~~~~~~~~~~~~~~~~w~s~~~~g~------~k~~-~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 374 FLIGPYGLIATAIIALSWTSANLAGN------TKAL-TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHhcchhhHHHHHHHHhhccccccch------HHhH-HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 33333334444555555555555442 2333 334444444555555555443 333332 666677433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=297.56 Aligned_cols=422 Identities=12% Similarity=0.033 Sum_probs=280.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
.++...+++...++.+...+|...++...|.+.+++... ...+++++ ..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~-------~~~ 56 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP-----------------------QNLSESAA-------NSL 56 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhccc-----------------------ccccccCC-------hhH
Confidence 345666677777888899999999998888887664221 12225666 889
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccc-------ccchhHHHHHHHHHHHHhhhcc
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYF-------LDIHAFGFYLIMQMVAGLFQAT 181 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~-------~~~~~~~~l~~~r~l~G~~~g~ 181 (538)
.|++.+.+.++..++++++|+++||+|||++++++.++++++.++++++.. .+.++++.+++.|+++|++.|.
T Consensus 57 ~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (479)
T PRK10077 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL 136 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH
Confidence 999999999999999999999999999999999999999998888776310 0113467789999999999999
Q ss_pred CchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHHHHHHHhhhc
Q 009268 182 GWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMGGIIVYLFLA 252 (538)
Q Consensus 182 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~~~~~~~~~~ 252 (538)
..+...++++|++|+++|++++++.+.+..+|.++++.+++.+. ++|||+.|++.+++.++. ++..+++|
T Consensus 137 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~l~ 215 (479)
T PRK10077 137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF-LMLLYFVP 215 (479)
T ss_pred HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH-HHHHHcCC
Confidence 99999999999999999999999999999999999988776553 368999999988877765 44566788
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH---HHHHHHHHHH
Q 009268 253 AYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF---AFCLFFAKLV 329 (538)
Q Consensus 253 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 329 (538)
|+|++...+++.++..+..++........ ...++.... .. .++.+ .+..+........ ....+.....
T Consensus 216 ~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (479)
T PRK10077 216 ETPRYLMSRGKQEQAEGILRKIMGNTLAT-QALQEIKHS---LD--HGRKT---GGKLLMFGVGVIVIGVMLSVFQQFVG 286 (479)
T ss_pred CCcHHHHHcCCHHHHHHHHHHHcCChhHH-HHHHHHHHH---HH--Hhhhh---hhhhcchhHHHHHHHHHHHHHHHHhC
Confidence 88765322111111000000000000000 000000000 00 00000 0011110000000 0111111122
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-Cc
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYG-SV 408 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 408 (538)
.+...++.|.+..+. |++....++.....++..+++.++.++++||+|||+.+..+..+.+++.+++..... ..
T Consensus 287 ~~~~~~~~p~i~~~~-----g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 287 INVVLYYAPEIFKTL-----GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred hhHHHHHHHHHHHHc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 334455677777765 888777777777788889999999999999999999988888877776655543221 11
Q ss_pred hHHHHHHHHHHHHHhhccc-hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh------cc-
Q 009268 409 SQTVNIVLMMVAGLFVNGP-YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS------TQ- 480 (538)
Q Consensus 409 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~------~~- 480 (538)
.........++++.+.+.. .+.....+.+.+|+ +.|+++.|+.+....++..+++.+.+.+. +.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 362 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh--------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 1122223333444444332 35567778888775 88999999999999999999987776554 34
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 009268 481 GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 481 g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
++...|++.+++.++++++.+++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhc
Confidence 67778887777666665554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=292.92 Aligned_cols=391 Identities=15% Similarity=0.176 Sum_probs=299.2
Q ss_pred HHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHH
Q 009268 35 ILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDL 114 (538)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s 114 (538)
++..++++.+...++....+...|.+.++ +|.+ ..+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------------------~g~s-------~~~~~~~~~ 44 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD-------------------------------LGSS-------LSQVQWVIT 44 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------cCCC-------hhhhhHHHH
Confidence 45667778888889999999999999887 7777 889999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccc
Q 009268 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWF 194 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 194 (538)
.+.++..++.++.|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++
T Consensus 45 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~ 119 (485)
T TIGR00711 45 SYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119 (485)
T ss_pred HHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC-------
Q 009268 195 GKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDP------- 266 (538)
Q Consensus 195 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------- 266 (538)
|+++|++++++......+|..+||.+++++. ++|||+.|++.+++.++..++.++..|++++....+.+...
T Consensus 120 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~ 199 (485)
T TIGR00711 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVG 199 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999887 57999999998888777666666666654322111000000
Q ss_pred --------CCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 009268 267 --------IPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLP 338 (538)
Q Consensus 267 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
....+.........................++..++++....+.+++|.++...+..++..+..+....++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 279 (485)
T TIGR00711 200 LGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLP 279 (485)
T ss_pred HHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000000000000000000111112234678899998888888888888888999999
Q ss_pred HHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hccCchHHHHHHHH
Q 009268 339 FYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR-TYGSVSQTVNIVLM 417 (538)
Q Consensus 339 ~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 417 (538)
.|+++. +|+++.++++...+..++.++++++.|++.||+++|+.+..+..+..++..++.. .....+.+......
T Consensus 280 ~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (485)
T TIGR00711 280 LYLQQV----LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ 355 (485)
T ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999998 7999999999999999999999999999999999999888777766666555542 22233445555567
Q ss_pred HHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 418 MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 418 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
++.|++.+..++.......+.+|+ +.+|++.|+.++.+.+|+.+|+.+.|.+.+.
T Consensus 356 ~l~g~g~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTTIALSGLPP--------HKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888877777777777777775 8899999999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=278.66 Aligned_cols=367 Identities=13% Similarity=0.010 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 37 LITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
..+.+..+...+......+.+|.+.++ ++.+ .++.++..+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~~-------------------------------~~~~-------~~~~~~~~s~~ 60 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVRD-------------------------------FNAD-------VSLAPASVSLY 60 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHH-------------------------------hCCC-------HHHHHHHHHHH
Confidence 344445555666777778888888776 6777 88999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGK 196 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 196 (538)
.++++++++++|+++||+|||++++.+.+++++++++++++ ++++.++++|+++|++.+...+...+++.|++|+
T Consensus 61 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~ 135 (413)
T PRK15403 61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ 135 (413)
T ss_pred HHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999998 9999999999999999887777778889999999
Q ss_pred CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 009268 197 RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 275 (538)
++|++++++......+|..+||++++.+. ++|||+.|++.+++.++..+..++.+||+++..+. ..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~-------~~------ 202 (413)
T PRK15403 136 TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV-------PF------ 202 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC-------CC------
Confidence 99999999999999999999999999887 46999999999888777655555566765431100 00
Q ss_pred ccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch
Q 009268 276 DEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT 355 (538)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 355 (538)
..+....++++++++|.++...+..++.....+.+..+.|.++++. +|+++.+
T Consensus 203 -----------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----~g~s~~~ 255 (413)
T PRK15403 203 -----------------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA----GGMTTSQ 255 (413)
T ss_pred -----------------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh----cCCCHHH
Confidence 0001123456788999999888888888888888888899999998 7999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHhhccchhhHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT--YGSVSQTVNIVLMMVAGLFVNGPYALITT 433 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 433 (538)
.++.......+.++++.+.+++.+|..+++.......+..++..++... ....+.+..++..++++++.+...+....
T Consensus 256 ~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~ 335 (413)
T PRK15403 256 FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR 335 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999888888888888888877654434333222222222222221110 11223333345556667766666665554
Q ss_pred HHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHH
Q 009268 434 AVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALI 495 (538)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~ 495 (538)
..- .+. ...+|++.++.+.....+..+++...|++.+.+-...|...+++..+
T Consensus 336 ~al--~~~-------~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 336 FTL--FSN-------NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV 388 (413)
T ss_pred HHh--ccC-------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 321 111 13468999999999999999999999998887666666655555444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=276.61 Aligned_cols=338 Identities=14% Similarity=0.130 Sum_probs=252.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccc---cchhHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFL---DIHAFGFYLIM 171 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~---~~~~~~~l~~~ 171 (538)
+|++ +.+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+++.++... ...+++.+++.
T Consensus 46 ~g~s-------~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (399)
T PRK05122 46 LGFS-------AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG 118 (399)
T ss_pred cCcc-------HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence 7788 8999999999999999999999999999999999999999888877766553110 01257789999
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+. ++|||+.+++.+++.++. . +.
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~-~---~~ 194 (399)
T PRK05122 119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG-L---LL 194 (399)
T ss_pred HHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-H---HH
Confidence 999999999999999999999999999999999999999999999999998887 579999988766654432 1 12
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
.++.|+....+ + + +.+.++.++ +++.......+..+.+
T Consensus 195 ~~~~~~~~~~~-------~-----------------------------~----~~~~~~~~~--~~~~~~~~~~~~~~~~ 232 (399)
T PRK05122 195 ARPRPAVPPVK-------G-----------------------------E----RLPFRRVLG--RVWPYGMGLALASIGF 232 (399)
T ss_pred HhcCCCCCCCC-------c-----------------------------c----chhHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22222111000 0 0 001122222 1222223333444556
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
.....++|.|+.+. |++ +.+...+...++.++++++.|++.||+++|+.+..+..+..+..+++.. ..+.
T Consensus 233 ~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 302 (399)
T PRK05122 233 GTIATFITLYYAAR-----GWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL---APSP 302 (399)
T ss_pred HHHHHHHHHHHHHc-----ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---hccH
Confidence 66777888888775 553 4566667788888999999999999999998877766665555444433 2344
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
+..++..++.|++.+..++.......+..++ +.+|++.|+++....+|..+++.+.|.+.+. ||+..+++.
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPP--------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5555666778888877777766777777765 8899999999999999999999999999988 999999988
Q ss_pred HHHHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLSRL 503 (538)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (538)
+++.+++.++...+
T Consensus 375 ~~~~~~~~~~~~~~ 388 (399)
T PRK05122 375 ALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHh
Confidence 88777766555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=275.49 Aligned_cols=344 Identities=15% Similarity=0.099 Sum_probs=269.7
Q ss_pred HHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHHHHHHH
Q 009268 44 ACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVG 123 (538)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~ 123 (538)
+..........+..|.+.++ +|++ .++.|++.+.+.++..++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-------------------------------~g~s-------~~~~g~~~~~~~~~~~~~ 56 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-------------------------------LSTP-------ASIVQMTLTLYLLGFAAG 56 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-------------------------------hCCC-------HHHHHHHHHHHHHHHHHH
Confidence 44445556666777888776 7777 899999999999999999
Q ss_pred HhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccchhh
Q 009268 124 MFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIM 203 (538)
Q Consensus 124 ~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 203 (538)
++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++
T Consensus 57 ~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (385)
T TIGR00710 57 QLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIY 131 (385)
T ss_pred HHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 009268 204 GVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQ 282 (538)
Q Consensus 204 ~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (538)
++.+....+|..+|+.+++.+. +++||+.|++.+++.++..+..++..||+++..+. +
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------------- 190 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR--------I------------- 190 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc--------C-------------
Confidence 9999999999999999999887 57999999998887777656655556554322110 0
Q ss_pred cccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhh
Q 009268 283 KGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTL 362 (538)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~ 362 (538)
+.+......++.+++|+++...+...+.....+....+.|.++++. +|+++.+.+.+...
T Consensus 191 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~ 250 (385)
T TIGR00710 191 ----------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI----MGVSPSVFGLLFAL 250 (385)
T ss_pred ----------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH----cCCCHHHHHHHHHH
Confidence 0011122346778889888887777777777778888889999877 69999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcC
Q 009268 363 FDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY--GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLG 440 (538)
Q Consensus 363 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 440 (538)
..++.++++++.|++.||+++|+....+..+..+..+++.... ............++.|++.+...+.......+..+
T Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 330 (385)
T TIGR00710 251 NIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP 330 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999888777666555444443211 11223333444556777777666666666665543
Q ss_pred CCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 441 THSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 441 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
+.++++.++.+.....++.+.+.+.+.+.+.
T Consensus 331 ---------~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 331 ---------HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred ---------ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5578999999988887666666666755444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=296.66 Aligned_cols=424 Identities=13% Similarity=0.049 Sum_probs=277.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchh
Q 009268 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLG 110 (538)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g 110 (538)
..+...+++.++.+...++....+...+.+..+.+.+.+ .+-+.+ ..+.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~-------~~~~~ 74 (481)
T TIGR00879 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSA-----------------------NSDSYS-------SSLWG 74 (481)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCc-----------------------ccCCCC-------hhHHH
Confidence 334444455556666777778888888877765321100 001233 78999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhh
Q 009268 111 EIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVI 190 (538)
Q Consensus 111 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 190 (538)
++.+++.++..++++++|+++||+|||++++++.++.+++.+++.+. ....+++.+++.|+++|++.+...+...+++
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i 152 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AFALSVEMLIVGRVLLGIGVGIASALVPMYL 152 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999888554 1114567899999999999999999999999
Q ss_pred hcccccCccchhhHHHHHHHhhhHhHHHHHH---HHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 009268 191 GNWFGKRKRGLIMGVWNAHTSVGNISGSLLA---ASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDP 266 (538)
Q Consensus 191 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~---~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 266 (538)
+|++|+++|++++++.+.+..+|..++++++ .... ..+||+.|++.++..++ .++..+++||+|+....+.+.++
T Consensus 153 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 231 (481)
T TIGR00879 153 SEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEE 231 (481)
T ss_pred HccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHH
Confidence 9999999999999999999999999999988 4443 46999999996665554 45556677887643211111100
Q ss_pred CCCCCCCC---CccccccccccccccccCcccccCCCCccccchhhhhcc------CchHHHHHHHHHHHHHHHHHHHHH
Q 009268 267 IPSSERLP---NDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLI------PGVIPFAFCLFFAKLVAYTFLYWL 337 (538)
Q Consensus 267 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
..+..++. ...+....+. ......... . +.+.....+.+.++. +.++...+..+...........+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (481)
T TIGR00879 232 ARKSLARLRGTSGEDKELLDE-LELIDIKRS-I--EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYS 307 (481)
T ss_pred HHHHHHHHhCCCCCcHHHHHH-HHHHHHHHH-H--HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHH
Confidence 00000000 0000000000 000000000 0 000000112222221 222223333333333334456677
Q ss_pred HHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hccCch-----H
Q 009268 338 PFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR--TYGSVS-----Q 410 (538)
Q Consensus 338 ~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~ 410 (538)
|.++++. |++..+++.......++.+++.++.|++.||+++|+.+..+..+..++.+++.. .....+ .
T Consensus 308 ~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 308 PTIFENA-----GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHHHHc-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 7777765 888888888999999999999999999999999999888776666655544431 111111 2
Q ss_pred HHHHHHHHHHHHhhc-cchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVN-GPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~ 488 (538)
........+.+.+.+ +..+.......+.+|+ +.++++.|+.++..++|++++|.+.+.+.+. +|...|++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~ 454 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL--------SLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIF 454 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehh
Confidence 222222223333322 2334444555666665 7899999999999999999999999999887 89988888
Q ss_pred HHHHHHHHHHHHHHHh
Q 009268 489 LMVGALIAGLLLSRLV 504 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~~ 504 (538)
.+++.+++.++.+++.
T Consensus 455 ~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 455 FGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHHHHHHHHHHHheec
Confidence 8888777766665443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=270.88 Aligned_cols=339 Identities=16% Similarity=0.145 Sum_probs=259.3
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHH-HHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTT-GMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ +.+.|++.+.+.+...+.+++.|+++||+||||.++. +.++..++.++++++ ++++.+++.|+
T Consensus 28 ~g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~ 95 (375)
T TIGR00899 28 VRAR-------PAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-----RNYFLLLVLGV 95 (375)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHH
Confidence 7888 8999999999999999999999999999999987654 566667777888888 89999999999
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchh--hHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLI--MGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++||++++++. .+|||+.|++.+++.++..++.+++
T Consensus 96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 99988888888888999999887777654 57888889999999999999887 5799999999988877766666666
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
+||.|++...+ + ...+.++.+++|+++...+..++.....
T Consensus 176 ~~~~~~~~~~~-------~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T TIGR00899 176 LPSYPRGAPGA-------L---------------------------------TRLEVRGLLASRDTRLLFVACTLMWGCN 215 (375)
T ss_pred CCCcccCcccc-------c---------------------------------CcchhhhhhcCcchHHHHHHHHHHHHHH
Confidence 77765432110 0 0001223556677766655555555555
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
.....++|.|+++. +|.++.+.+.+.....+..+++.++.|++.||+++|+.+..+.....+....+.. .++.
T Consensus 216 ~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 288 (375)
T TIGR00899 216 ILYIINMPLLIIHE----LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA---DNSL 288 (375)
T ss_pred HHHHhhhHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56677889998877 6999999998888777778888999999999999998877665544333222222 2344
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
+......++.|++.+...+.......+..| ++++++.|+.+...++|..++|.+.|.+.+. +|+..|++.
T Consensus 289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~ 359 (375)
T TIGR00899 289 WALLMLQLLNAIFIGILAGIGMLYFQDLMP---------GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFA 359 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 444555566677766666666666666554 4457999999999999999999999999988 999999988
Q ss_pred HHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLS 501 (538)
Q Consensus 490 ~~~~~~~~~~~~ 501 (538)
+++.+++.++..
T Consensus 360 ~~~~~~~~~~~~ 371 (375)
T TIGR00899 360 IVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHh
Confidence 887777666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=278.36 Aligned_cols=347 Identities=22% Similarity=0.348 Sum_probs=274.8
Q ss_pred HHHHHHHHHhcCCccceec-cccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHH
Q 009268 40 FIAYACYHASRKPSSIVKS-VLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLA 118 (538)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l 118 (538)
+++.+..........+..| .+.++ +|++ ..+.|++.+++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~s-------~~~~~~~~~~~~~ 43 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEE-------------------------------LGLS-------PSQIGLLFSAFFL 43 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCC-------------------------------STTT-------SHCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc-------------------------------cCCC-------HHHHHHHHHHHHH
Confidence 3455556666666777777 67766 7888 9999999999999
Q ss_pred HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCc
Q 009268 119 CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRK 198 (538)
Q Consensus 119 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 198 (538)
+..+++++.|+++||+|||++++.+.++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++
T Consensus 44 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 118 (352)
T PF07690_consen 44 GSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE 118 (352)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC
T ss_pred HHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHHHHhhhccccccccccccccccccccccchhhh
Confidence 999999999999999999999999999999997777776 778899999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q 009268 199 RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDE 277 (538)
Q Consensus 199 r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
|++++++......+|.++||.+++.+. ++|||+.|++.+++.++..++..+++++++++...+.++++..
T Consensus 119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--------- 189 (352)
T PF07690_consen 119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESES--------- 189 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----------
T ss_pred hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccccc---------
Confidence 999999999999999999999999988 6799999999999888876654555655544333221110000
Q ss_pred ccccccccccccccCcccccCCCCcccc-chhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCC-cch
Q 009268 278 ESHMQKGKTAAVENNSGIRYGSGSRTSV-GLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLS-VKT 355 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~-~~~ 355 (538)
+.++... .++.++++|.+|...+..++..+.......++|.|+.+. +|++ ..+
T Consensus 190 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~ 244 (352)
T PF07690_consen 190 ---------------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV----LGFSGPSQ 244 (352)
T ss_dssp ----------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHCCTHHH
T ss_pred ---------------------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc----cCCCHHHH
Confidence 0111112 256777888787566666666677888999999997777 6999 789
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAV 435 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 435 (538)
.+.+.....+.+++++++.|++.||+++++..........+..+.+.......+..+.....++.|++.+...+.....+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 324 (352)
T PF07690_consen 245 AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLI 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987776666665555555544322223455666677788998888899999999
Q ss_pred HhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhH
Q 009268 436 SADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGP 471 (538)
Q Consensus 436 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 471 (538)
.+..|+ +.+|++.|+.+...++++.++|
T Consensus 325 ~~~~~~--------~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 325 QELVPP--------EYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HCCCHT--------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCH--------HHHHHHHHHHHHHHHHHHHHCC
Confidence 998886 8899999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=272.29 Aligned_cols=349 Identities=15% Similarity=0.143 Sum_probs=259.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFG---MGYFLDIHAFGFYLIM 171 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~---~a~~~~~~~~~~l~~~ 171 (538)
+|++ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++. +. .++++.+++.
T Consensus 43 ~g~s-------~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 111 (402)
T TIGR00897 43 LGLS-------PQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG----HANYPLILLF 111 (402)
T ss_pred hCCC-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----CccHHHHHHH
Confidence 6777 89999999999999999999999999999999999999999988876553 22 1578899999
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhH-hHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGN-ISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
|+++|++.+...+...+.+.+++|+++|++++|+...+.++|. +++|++++++. .+||+..++......++..++.++
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888888889999999999999999999999997 57899888777 578776666544433333333444
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLV 329 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
+.++.+++...+ ++ + +.++....++.++++|.++...+..++....
T Consensus 192 ~~~~~~~~~~~~------~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
T TIGR00897 192 SNKDIFTPQHMQ------TR-E---------------------------KFSELGKAATILFTNPNVLLGGMVRIINTIG 237 (402)
T ss_pred ccCCCCCccccc------CC-c---------------------------chhhHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 444432211000 00 0 0000112245678899999888888888888
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhh--cc
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAA-TFMYAAIPSMLLYRT--YG 406 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~~~~~~--~~ 406 (538)
.+.+.++.|.|+++. |++..+.+.+.....++.++++++.|+++||+++|+.... ......+....+... ..
T Consensus 238 ~~~~~~~~p~~~~~~-----g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 312 (402)
T TIGR00897 238 LFGFAVFLPMFVAEL-----GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF 312 (402)
T ss_pred HHHHHHHHHHHHHHc-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888999999998765 9999999998888999999999999999999998876542 222222222222211 11
Q ss_pred CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHH
Q 009268 407 SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAV 485 (538)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~ 485 (538)
..+.+...+..++.|++.+...+ ...... +.++ +.+|++.|+.+....+++.++|.+.|.+.|. |+...
T Consensus 313 ~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~-~~~~--------~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~ 382 (402)
T TIGR00897 313 GHSFAVALIIAIALGIFLAGYVP-LAAVFP-TLAP--------KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGV 382 (402)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-HHHHHH-hhCc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 23444455566677776665433 333433 3443 6789999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009268 486 FIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~ 503 (538)
+++.+++.+++.++..+.
T Consensus 383 ~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 383 VWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999888888777766654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=270.24 Aligned_cols=357 Identities=16% Similarity=0.167 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHH
Q 009268 36 LLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLA 115 (538)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~ 115 (538)
+..++++.+.........++.+|.+.++ +|+| ..++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-------------------------------~~~s-------~~~~G~~~s~ 49 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQ-------------------------------EHLP-------TWQVGVVSSS 49 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH-------------------------------cCCC-------HHHHHHHHHH
Confidence 3344566666777778888899998877 7777 8999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccc
Q 009268 116 FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFG 195 (538)
Q Consensus 116 ~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 195 (538)
+.+++.+++++.|+++||+|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+.+.+..+
T Consensus 50 ~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 124 (381)
T PRK03633 50 YFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-----VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGT 124 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999998 999999999999999999988888888888999
Q ss_pred cCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 009268 196 KRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275 (538)
Q Consensus 196 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 275 (538)
+++|++++++...+.++|..+||.+++.+.+..++...+..+...... +.. .+.+.+++..+ +
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~---------~------ 187 (381)
T PRK03633 125 SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAI-LPL-LFTRILNQQAE---------N------ 187 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH-HHH-HHhcccCCCCC---------C------
Confidence 899999999999999999999999999887433333333333222221 111 22222111000 0
Q ss_pred ccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch
Q 009268 276 DEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT 355 (538)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 355 (538)
+ +..+.++.+++|.++......+.....+.....++|.|+++. |.++..
T Consensus 188 -----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----g~s~~~ 236 (381)
T PRK03633 188 -----------------------H---DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-----GMSDAS 236 (381)
T ss_pred -----------------------C---CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHH
Confidence 0 011235567788777655445555555666777899999876 899999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAV 435 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 435 (538)
++.+.+...++.+++++..|++.||+++|+.+..+..+..++.+.+.. .........+.|++....++.....+
T Consensus 237 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~p~~~~~~ 310 (381)
T PRK03633 237 IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS------QAAMAPALFILGAAGFTLYPVAMAWA 310 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999998877766665554433321 11222334455655556677777777
Q ss_pred HhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 436 SADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 436 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
.+..++ +.++.+.+..+...++|+.++|.+.|.+.|. ++...|.+.+.+.++..
T Consensus 311 ~~~~~~--------~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 311 CEKVEH--------HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HccCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 777664 5667778888888899999999999999998 88888888777766544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=273.42 Aligned_cols=370 Identities=14% Similarity=0.107 Sum_probs=277.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++..+..+..+++.++...+++...+...|.++++ +|++ +.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-------------------------------~~~s-------~~ 61 (438)
T PRK10133 20 QSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA-------------------------------FTLT-------NF 61 (438)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hCCC-------HH
Confidence 334455556666777777788888888999998776 7888 99
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHH---hccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLF---GMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++ .++ ++++.+++.|+++|+|.|...+
T Consensus 62 ~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a-----~~~~~ll~~r~l~G~g~g~~~~ 136 (438)
T PRK10133 62 QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLET 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999886 456 8999999999999999999999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--H-------------------------hCchHHHHHHH
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--D-------------------------YGWGWSFILPG 237 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~-------------------------~gwr~~f~~~~ 237 (538)
..+.++.|+.++++|.+.+++.+..+.+|..+|+.+++.+. . .+||++|+...
T Consensus 137 ~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~ 216 (438)
T PRK10133 137 AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIV 216 (438)
T ss_pred hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877777777899999999999999998876543 0 25666776544
Q ss_pred HHHHHHHHHH-HhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCch
Q 009268 238 ASIVMGGIIV-YLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGV 316 (538)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
.+..+..++. ....||.+.+.. .++ +..+.....++++++|.+
T Consensus 217 ~v~~~~~~~~~~~~~p~~~~~~~-------~~~-----------------------------~~~~~~~~~~~ll~~~~~ 260 (438)
T PRK10133 217 AIVLLVALLIMLTKFPALQSDNH-------SDA-----------------------------KQGSFSASLSRLARIRHW 260 (438)
T ss_pred HHHHHHHHHHHHhcCCCCCcccc-------ccc-----------------------------cccchhhhHHHHHhCchH
Confidence 3333222222 222222111000 000 000111234577889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYL-SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+...+..++.....++...|.+.|+ ++. +|+++.+++.......++.++++++.+++.||+++|+.+..+..+..
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~ 336 (438)
T PRK10133 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 8777777777777887888999886 555 69999999999999999999999999999999999998877765555
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
+..++... .+ +. .......+.|++.+..+|...+...+..+ +..+++.++.. +..+|+.++|.+.|
T Consensus 337 ~~~~~~~~-~~--~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~---------~~~~~as~l~~-~~~~g~~~~~~i~G 402 (438)
T PRK10133 337 ALCLISAF-AG--GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLG---------QDTKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_pred HHHHHHHH-cC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccc---------hhhccchhHHh-HHhccchHHHHHHH
Confidence 44333322 21 22 23455677899999999999999888876 33466777775 45578999999999
Q ss_pred Hhhcc-C-chHHHHHHHHHHH
Q 009268 476 FLSTQ-G-WDAVFIMLMVGAL 494 (538)
Q Consensus 476 ~l~~~-g-~~~~~~~~~~~~~ 494 (538)
.+.|. | .+..|++...+.+
T Consensus 403 ~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 403 FVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHhccchHHHHHHHHHHHH
Confidence 99888 6 6777765444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=272.10 Aligned_cols=336 Identities=14% Similarity=0.198 Sum_probs=256.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++.++ ++++.+++.|++.|++.+ ..+....
T Consensus 56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~~ 129 (408)
T PRK09874 56 SGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----QNIWQFLILRALLGLLGG-FVPNANA 129 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhhh-hHHhHHH
Confidence 5899999999999999999999999999999999999999999988887 899999999999999865 5677888
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
++.+++|+++|++++++......+|..++|.+++.+. .++||+.|++.+++.++..+..++++||+++..+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 203 (408)
T PRK09874 130 LIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK------ 203 (408)
T ss_pred HHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch------
Confidence 8999999999999999999999999999999999887 579999999998887776666666666643211100
Q ss_pred CCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHH-HHHHHHHHHHHHHHHHHHHHhhhccc
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFA-FCLFFAKLVAYTFLYWLPFYLSQTEI 346 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (538)
.+.+..+..+.+++|+++... ...+...........+++.|..+.
T Consensus 204 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (408)
T PRK09874 204 --------------------------------EMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVREL-- 249 (408)
T ss_pred --------------------------------hhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000001123445666665433 333344444455667788888775
Q ss_pred CCcCCCc---chhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHh
Q 009268 347 GGEYLSV---KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLF 423 (538)
Q Consensus 347 ~~~g~~~---~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 423 (538)
.+... ...+.+....+++.+++.+..|++.||+++|+.+..+.....+..+.+.. ..+.+...+..++.|++
T Consensus 250 --~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~ 324 (408)
T PRK09874 250 --AGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSF---VQTPLQLGILRFLLGAA 324 (408)
T ss_pred --hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHhh
Confidence 22221 12455666677888889999999999999999888776655544443332 13445555666778888
Q ss_pred hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 424 VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
.+...+...+.+.+..++ +.+|+.+|+.+....+|..++|.+.|.+.+. +|+..|++.+++.+++.++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 325 DGALLPAVQTLLVYNSSN--------QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hHhhHHHHHHHHHHhCCc--------ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 888788777777776664 7789999999999999999999999999988 9999999988888877666544
Q ss_pred H
Q 009268 503 L 503 (538)
Q Consensus 503 ~ 503 (538)
.
T Consensus 397 ~ 397 (408)
T PRK09874 397 S 397 (408)
T ss_pred H
Confidence 3
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=271.04 Aligned_cols=376 Identities=19% Similarity=0.225 Sum_probs=280.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
...+..++.++++++..+.+++|+..+.-..+.++.. ||++ +
T Consensus 26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------------------------------fni~-------~ 67 (493)
T KOG1330|consen 26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------------------------------FNIS-------D 67 (493)
T ss_pred cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------------------------------cCCC-------c
Confidence 4556677888999999999999999998888888766 7888 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
+..|++.+.+.+.+++.+|+.|+++||+.||+++.+|..+++++.++++++ ..||+++++|.+.|+|.+...|++
T Consensus 68 s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-----~~Fwq~~l~R~~vGiGeAs~~~ia 142 (493)
T KOG1330|consen 68 SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-----NHFWQVLLCRGFVGIGEASYSPIA 142 (493)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccchhhhcccc
Confidence 899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
+++++|.+|.++|++++++++.+..+|..+|.+.+..+.. +.|||.|++.++++++++++.+++.+|+++....+.+.
T Consensus 143 ~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 143 PSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred hhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 9999999999999999999999999999999999888873 45999999999999999999999998876542221111
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+.... +......++.+.+.++|.+....+......+....+..|.|.++...
T Consensus 223 ~~~~~----------------------------~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~ 274 (493)
T KOG1330|consen 223 ENKMV----------------------------KPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYS 274 (493)
T ss_pred CCcCC----------------------------CCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHH
Confidence 00000 01223344556667777776666666666666666666666655433
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH-------HH---HHHHHHHHHHHHHHHHhhccCchHHHHH
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR-------AT---TAATFMYAAIPSMLLYRTYGSVSQTVNI 414 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
..- .|++..+..++..+...++.+|.+++|.++||+.++ +. ........++.++.+...... ......
T Consensus 275 ~~~-~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-~s~~~~ 352 (493)
T KOG1330|consen 275 YEL-IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-SSMIFG 352 (493)
T ss_pred HHH-hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-HHHHHH
Confidence 100 256666677778888899999999999999996442 11 111112222222222222222 333334
Q ss_pred HHHHHHHHhhcc-chhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhcc--Cch
Q 009268 415 VLMMVAGLFVNG-PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLSTQ--GWD 483 (538)
Q Consensus 415 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~--g~~ 483 (538)
+.++++|..... ..+.......+.+++ +.|.++.++...+..+ |..-+|++.|.+.|. +|+
T Consensus 353 ~il~~~g~~~~~~~~a~n~~i~l~vV~p--------~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 353 LILFLVGETISWFNWATNNPIFLEVVPP--------SRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHHHHHHHHhcccccccceeeEecCc--------ccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 444555554433 334444455566665 7888999988877765 555556699999998 666
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=276.23 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=260.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+.......++++.+++.|++.|++.+...++
T Consensus 51 ~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 130 (417)
T PRK10489 51 TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTA 130 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999998888777766554210001267899999999999998888899
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
..+++.|++|+++|+++.++.....++|..+||.+++.+. ..+|++.|++.++..++. ++..+.+|+.+++...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~--- 206 (417)
T PRK10489 131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALPPPPQPR--- 206 (417)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCCCCCccc---
Confidence 9999999999999999999999999999999999999887 578999999877766554 34445555543211000
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
++ ..++....++..+++|.++...+..++.. .......++|.|+++.
T Consensus 207 ---~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~ 253 (417)
T PRK10489 207 ---EH-----------------------------PLRSLLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEV 253 (417)
T ss_pred ---cc-----------------------------chHHHHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhc
Confidence 00 00001122345667777665555444433 2456777899999996
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhh
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFV 424 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 424 (538)
+|.++...+++.+...++.+++.++.+++.||.++++.+..+..+..+..+++.. .++.+...+..++.|++.
T Consensus 254 ----~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~ 326 (417)
T PRK10489 254 ----WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL---MPMWILAVLCLALFGYLS 326 (417)
T ss_pred ----cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999877666666665555444433322 234455556667777776
Q ss_pred ccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 425 NGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+...+...+.+.+..|+ +.||+++|+.+...++|..++|.+.|.+.|. ++...+...+++.++..++....
T Consensus 327 ~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 327 AISSLLQYTLLQTQTPD--------EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHhhCCH--------HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 66556666777777775 8899999999999999999999999999998 88888877776666655554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=279.62 Aligned_cols=382 Identities=23% Similarity=0.334 Sum_probs=282.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++++|..+...++.++....+....+...|.+.++ +|++ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-------~~ 52 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAE-------------------------------WGLD-------PV 52 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc-------------------------------cCCC-------HH
Confidence 345677777777888888888888888888888877 6777 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.|++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++.|++.+...+...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~ 127 (398)
T TIGR00895 53 QLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----TNVTQLLILRFLAGLGLGGLMPNLN 127 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHhcccccchhhHH
Confidence 99999999999999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDP 266 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 266 (538)
+++.|++|+++|++++++...+..+|..+++.+++++. ..|||+.|++.+++.++..++.+.++||+++....+. +++
T Consensus 128 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 206 (398)
T TIGR00895 128 ALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PET 206 (398)
T ss_pred HHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC-HHH
Confidence 99999999999999999999999999999999998887 5799999999877777666666777777654322110 000
Q ss_pred CCCCCCCCCccccccccccccccccCcccccCCCCccccchhh-hhcc---CchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 267 IPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQ-ACLI---PGVIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
..+..++... ....+.+...+.. +..++......+ .++. +..+...+..++.....+....+.|.+..
T Consensus 207 ~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (398)
T TIGR00895 207 VRRIVNAIAP---QMQAEAQSALPEQ-----KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV 278 (398)
T ss_pred HHHHHHHHHH---hcccccccccccc-----ccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000000000 000011111112 2222 23344444555666667777888896655
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
+. |++..+++...+...++.+++.++.+++.||+++|+.. ....+..+...++... ..+.+......++.|+
T Consensus 279 ~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~ 350 (398)
T TIGR00895 279 EL-----GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTA-LLLLLGAVFAVLVGST--LFSPTLLLLLGAIAGF 350 (398)
T ss_pred Hc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHH
Confidence 54 89999999999999999999999999999999988443 3333333333333221 2344555667778888
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
+.+...+.....+.+.+|+ +.+|++.|+.+.+..+|..++|.+.|.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 351 FVNGGQSGLYALMALFYPT--------AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 8888888888888888875 8899999999999999999999999875
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=289.17 Aligned_cols=380 Identities=15% Similarity=0.145 Sum_probs=268.3
Q ss_pred ccccCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 009268 91 VSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLI 170 (538)
Q Consensus 91 ~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~ 170 (538)
...+++++.-+ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++++++ ++++.+++
T Consensus 115 i~~e~~l~c~~----~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~ 185 (505)
T TIGR00898 115 IVTEWDLVCED----AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----PNYTVFLV 185 (505)
T ss_pred EEEEecceech----HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----ccHHHHHH
Confidence 34446765211 5678999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+ ||+.|++.+++.++.. +..++
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--wr~~~~~~~i~~~~~~-~~~~~ 262 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD--WRWLQLAVSLPTFLFF-LLSWF 262 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999999999998877655 9999999988877654 44477
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
+||+|++...+++.++..+..++..+.+..... ++...... ..+...+.++...++++++|.++...+......+..
T Consensus 263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (505)
T TIGR00898 263 VPESPRWLISQGRIEEALKILQRIAKINGKKLP--AEVLSLSL-EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT 339 (505)
T ss_pred cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCC--HHHHhhhh-hhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH
Confidence 899887654333222111100000000000000 00000000 000001112345678889988877666655544443
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
......++.++.+. +.+.. ......++..+++.++.+++.||+|||+.+.....+.+++.+++... .....
T Consensus 340 ~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-~~~~~ 410 (505)
T TIGR00898 340 AFSYYGLVLDLGNL-----GGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-PVDLY 410 (505)
T ss_pred HHHHHHHhcccccc-----CCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-CCCch
Confidence 33333334444333 44432 33345567788899999999999999999888877766665555442 22222
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLM 490 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~ 490 (538)
+......++.+++.+..++..+.+..+.+|+ +.|+++.|+.+++..+|++++|.+.+ +.+.++...+.+.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~ 481 (505)
T TIGR00898 411 FLRTALAVLGKFGITSAFQMVYLYTAELYPT--------VVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFG 481 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccH--------HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHH
Confidence 3444455566666667778888888888886 88999999999999999999999988 55446667777777
Q ss_pred HHHHHHHHHHHHH
Q 009268 491 VGALIAGLLLSRL 503 (538)
Q Consensus 491 ~~~~~~~~~~~~~ 503 (538)
++.+++.++.+++
T Consensus 482 ~~~~~~~~~~~~l 494 (505)
T TIGR00898 482 GLALLAGILTLFL 494 (505)
T ss_pred HHHHHHHHHHHcC
Confidence 7777766655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=272.20 Aligned_cols=329 Identities=15% Similarity=0.129 Sum_probs=259.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.|++.+++.++..++++++|+++||+|||++++.+.++.+++.++.+++...+..+++.+++.|+++|++.+...+.
T Consensus 33 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999988888888871000119999999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
..+++.|++|+++|++++++.+....+|.++||++++++. ..|||+.|++.++..++..+..+ ..+++++....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--- 188 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV-SVRIPELAASEI--- 188 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcccccCCCccc---
Confidence 9999999999999999999999999999999999999887 57999999988776655433333 222211110000
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL-YWLPFYLSQ 343 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 343 (538)
++ ..+ + ..++.....+..+++|.++...+..++......... .+.|.|.++
T Consensus 189 ---~~----~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T TIGR00900 189 ---QA----LSN--A-------------------VLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK 240 (365)
T ss_pred ---cc----cch--h-------------------HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 00 000 0 000112234567888888888777777777776666 788999988
Q ss_pred cccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHh
Q 009268 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLF 423 (538)
Q Consensus 344 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 423 (538)
. +|.+..+.+.+.....++.+++.++.+++.||.++|+....+..+..+....+... .. +.+...+..++.|++
T Consensus 241 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~ 314 (365)
T TIGR00900 241 Y----LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-PP-NFPLFLVLWFAIGVG 314 (365)
T ss_pred H----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-ch-hHHHHHHHHHHHHHH
Confidence 6 69999999999999999999999999999999999988776655555544443332 11 355666777888888
Q ss_pred hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 424 VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.+...+.....+.+.+|+ +.+|++.|+.+...+++..++|.+.|.+.|.
T Consensus 315 ~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 315 YGPINVPQGTLLQRRVPA--------ELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886 8899999999999999999999999998874
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=266.98 Aligned_cols=337 Identities=15% Similarity=0.113 Sum_probs=253.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ ..+.|++.+.+.++..+.++++|+++||+|||++++.+.++.+++.+++.++ ++++.+++.|++
T Consensus 41 ~g~s-------~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l 108 (400)
T PRK11646 41 LGWA-------AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLLWLSCIL 108 (400)
T ss_pred hCCc-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHH
Confidence 6888 9999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccC
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAY 254 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 254 (538)
+|++.+...+...+++.|++|+++|++++++.....++|..+||.+++++.++|||+.|++.+++.++..++..+..||.
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 109 SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999888899999999999999999999999999999999999999999888999999998877766555545555432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHH
Q 009268 255 PEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL 334 (538)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
++.. ..++...++++.+++|+++...+..+..........
T Consensus 189 ~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (400)
T PRK11646 189 KLST----------------------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVM 228 (400)
T ss_pred cccc----------------------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 1100 000011234677888887766555554444444456
Q ss_pred HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHH
Q 009268 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD-KLKARATTAATFMYAAIPSMLLYRTYGSVSQTVN 413 (538)
Q Consensus 335 ~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (538)
.++|.|+++. +.++.+.+.+.+...++.+.+....+++.| |++.++.+..+..+..++..++.. .++.+..
T Consensus 229 ~~~p~~~~~~-----~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~ 300 (400)
T PRK11646 229 LMLPIMVNDI-----AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGM---VSNLQQL 300 (400)
T ss_pred HhhhhhHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---hhhHHHH
Confidence 7889999887 447778888887777766655555566555 455555555555555444433322 1334444
Q ss_pred HHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccC-----chHHHHH
Q 009268 414 IVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQG-----WDAVFIM 488 (538)
Q Consensus 414 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g-----~~~~~~~ 488 (538)
.+..++.+.+.+...+...+.+.+..|+ +.+|+++|+.+....+|..+||.+.|.+.|.+ ....++.
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~ 372 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADA--------RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMM 372 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCc--------ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHH
Confidence 4445556666666667777778777775 88999999999999999999999999999872 3455555
Q ss_pred HHHHHHHHHHH
Q 009268 489 LMVGALIAGLL 499 (538)
Q Consensus 489 ~~~~~~~~~~~ 499 (538)
.+++.+++.+.
T Consensus 373 ~~~~~~~~~~~ 383 (400)
T PRK11646 373 LGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=266.76 Aligned_cols=338 Identities=12% Similarity=0.129 Sum_probs=248.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFG---MGYFLDIHAFGFYLIM 171 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~---~a~~~~~~~~~~l~~~ 171 (538)
+|+| ..+.|++.+.+.+++.++++++|+++||+||||+++.+.++..++.+... +......++++.+++.
T Consensus 46 lg~s-------~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 118 (392)
T PRK12382 46 LGFG-------NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVG 118 (392)
T ss_pred cCCc-------HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 7888 99999999999999999999999999999999999999887776654332 2100012588999999
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
|+++|++.+...+...+++.|++|+++|++++++.+.+...|..+||++++++. .+|||+.+.+..++.++. +.+
T Consensus 119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~----~~~ 194 (392)
T PRK12382 119 RLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA----WAF 194 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH----HHH
Confidence 999999999888988999999999999999999999999999999999999887 579998877654443322 222
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
.++.|+.+..+ + ++ .+.++.++ .++...+..++.....
T Consensus 195 ~~~~~~~~~~~-------~-----------------------------~~----~~~~~~~~--~~~~~~~~~~l~~~~~ 232 (392)
T PRK12382 195 NGTVRKVPAHA-------G-----------------------------ER----PSLWSVVG--LIWKPGLGLALQGVGF 232 (392)
T ss_pred HHhccCCCCCc-------c-----------------------------cC----chHHHHHH--HHHHhHHHHHHHHHHH
Confidence 23222211000 0 00 00111111 1111122223334455
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
.....+.|.|+++. +++. .+.......++.++++++.|++.||+++|+.+..+..+..+..+++.. ..+.
T Consensus 233 ~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 302 (392)
T PRK12382 233 AVIGTFVSLYFASK-----GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL---APTA 302 (392)
T ss_pred hHHHHHHHHHHHhc-----CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH---cccH
Confidence 56677888888776 5543 456666777888899999999999999998888777666665544333 2344
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
+...+..++.|++.+...+.......+..++ +.+|++.|+.+....+|..++|.+.|.+.|. ||+..|.+.
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~ 374 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPS--------QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAG 374 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 5555566777877777777777777777775 8899999999999999999999999999998 999999998
Q ss_pred HHHHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLSRL 503 (538)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (538)
+++.+++.++.+..
T Consensus 375 ~~~~~~~~~~~~~~ 388 (392)
T PRK12382 375 AISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHhh
Confidence 88887776665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=267.84 Aligned_cols=346 Identities=11% Similarity=-0.017 Sum_probs=258.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++++++++++ .+. ++.|+++|++.+...|+
T Consensus 37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----~~~---~~~r~l~G~~~a~~~pa 108 (393)
T PRK11195 37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----IHP---LLAYGLVGIGAAAYSPA 108 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999998888776 553 78899999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
..+++.|++|+++|++++++.+....+|.++||.+++++.++.|+..+.+.+...++. ++..+.+||++.+.+..+
T Consensus 109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~--- 184 (393)
T PRK11195 109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS--- 184 (393)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC---
Confidence 9999999999999999999999999999999999999998767888887766554433 444566666543211100
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (538)
.+ . .. ..+......+.++++|.+.......++.+.........+|.|+++.
T Consensus 185 --~~------~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (393)
T PRK11195 185 --WN------P-IA-------------------LLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA- 235 (393)
T ss_pred --CC------H-HH-------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00 0 00 0000011235667788776555554444555556666778888887
Q ss_pred cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhc
Q 009268 346 IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVN 425 (538)
Q Consensus 346 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 425 (538)
+|.++.+.|++.+...++.++++++.+++.||.++++.+..+. +.++....+.. ..+.+...+..++.|++.+
T Consensus 236 ---lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 236 ---LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMAL---QHSLLPAYPLLILIGALGG 308 (393)
T ss_pred ---cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHH---HhHHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999999999999988877666553 22222222221 2344445566667888877
Q ss_pred cchhhHHHHHHhhcCCCcccccccch-hHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHh
Q 009268 426 GPYALITTAVSADLGTHSSVRGDSRA-LATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
...++..+.+++. ++ .+. +|++.++.+...+++..++..+.+.+...+.+..+++.+...+++..+.+.++
T Consensus 309 ~~~~~~~~~~q~~-~~-------~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 309 FFVVPMNALLQHR-GH-------VLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred hhhhhHHHHHHhh-Cc-------ccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777654 33 133 79999999999999999999999977655878777777777776666665554
Q ss_pred hhh
Q 009268 505 IAE 507 (538)
Q Consensus 505 ~~~ 507 (538)
.++
T Consensus 381 ~~~ 383 (393)
T PRK11195 381 WHR 383 (393)
T ss_pred HHH
Confidence 433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=266.40 Aligned_cols=319 Identities=14% Similarity=0.081 Sum_probs=248.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ +++.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++
T Consensus 36 ~~~s-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l 103 (401)
T PRK11043 36 LQTS-------ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----ESAAQLLVLRFV 103 (401)
T ss_pred HCCC-------HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHH
Confidence 7788 8999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
+|++.+...+...+++.|+++++++++..+.......+|..++|.+++++. ++|||+.|++.+++.++..++.+ .+++
T Consensus 104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 182 (401)
T PRK11043 104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKP 182 (401)
T ss_pred HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 999988888888899999999999999999999999999999999999887 57999999998887777544433 3443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
++++.+ ++++..++++.+++|+++...+........++.+
T Consensus 183 ~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (401)
T PRK11043 183 SKKARK----------------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAW 222 (401)
T ss_pred CCCccc----------------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence 321100 0001123567788888776666655566666777
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hccCchHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR--TYGSVSQT 411 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 411 (538)
..+.|.++++. |+++.+.++......++.++++++.+++.||+++|+..........+..+.+.. .....+.+
T Consensus 223 ~~~~p~~~~~~-----g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (401)
T PRK11043 223 LTGSPFILEQM-----GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLV 297 (401)
T ss_pred HHHhHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence 88899988765 899999998888888899999999999999999888665544443333322211 11123344
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.......+.|++.+..++.......+..+ +.+|++.|+.+.....++..++.+.|.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 298 PLLIPFCVMAAANGAIYPIVVAQALRPFP---------QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCc---------ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 44445566677777777776666555443 5689999999999999999999999998876
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=263.50 Aligned_cols=351 Identities=13% Similarity=0.080 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHH
Q 009268 35 ILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDL 114 (538)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s 114 (538)
.+.+..+......+......+.+|.+.++ +|++ +.+.+++.+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~-------------------------------~~~s-------~~~~~~~~~ 50 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARD-------------------------------LNVR-------EGAVQAVMA 50 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHH-------------------------------hCCC-------HHHHHHHHH
Confidence 33344444445555556666777888776 7778 899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccc
Q 009268 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWF 194 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 194 (538)
.+.+++.++++++|+++||+|||+++..+.++..++.+++.++ ++++.+++.|++.|++.+...+....++.|++
T Consensus 51 ~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 125 (394)
T PRK11652 51 AYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----HSLTVLIAASAIQGLGTGVGGVMARTLPRDLY 125 (394)
T ss_pred HHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999888 89999999999999999888888888999999
Q ss_pred ccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCC
Q 009268 195 GKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERL 273 (538)
Q Consensus 195 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 273 (538)
++++|++++++...+..+|..++|.+++.+. ..|||+.|++.+++.++..++..++.||+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 192 (394)
T PRK11652 126 EGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR------------- 192 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc-------------
Confidence 9999999999999999999999999999887 47999999998887776655555666664322100
Q ss_pred CCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCc
Q 009268 274 PNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSV 353 (538)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~ 353 (538)
+++....+++.+++|+++...+..+........+..+.+.++++. +|+++
T Consensus 193 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~ 242 (394)
T PRK11652 193 --------------------------RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV----LGLSS 242 (394)
T ss_pred --------------------------hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH----cCCCH
Confidence 000122345677888877666665555555666667778888887 69999
Q ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHH
Q 009268 354 KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITT 433 (538)
Q Consensus 354 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 433 (538)
.+.+++.....++.++++++.+++.||.+++........................+.+......++.+++.+..++...+
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (394)
T PRK11652 243 MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATS 322 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999988443332222222222222211111223444555566777777777788877
Q ss_pred HHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 434 AVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
...+..+ +.+|++.++.+....+|+.+++.+.+.+.+.
T Consensus 323 ~~~~~~~---------~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 323 GAMEPFP---------YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHhhcc---------ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7776654 5678999999999999999999999988765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=264.01 Aligned_cols=327 Identities=13% Similarity=0.094 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|.+ ..+.+++.+.+.++..+++++.|+++||+|||+.++.+.++.+++.+++.++ ++++.+++.|++
T Consensus 33 ~~~s-------~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l 100 (392)
T PRK10473 33 LNAS-------EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-----ETSSLFLAGRFL 100 (392)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHH
Confidence 6777 8899999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
+|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+. ..|||+.|++.+++.++..++.++.+||
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999989999999999999999999999999999999999999998876 5799999999988887776666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
+++.... + +.......++.+++|+++...+...+.......+
T Consensus 181 ~~~~~~~--------~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
T PRK10473 181 TRPARAP--------A------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTF 222 (392)
T ss_pred CCCcccC--------C------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 5322100 0 0001112345677777766555555444445556
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVN 413 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (538)
..+.|.++++. +|+++.+.+.+.+...++.+++.++.+++.||+++|+....+..+..++.+++... ...+..
T Consensus 223 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 295 (392)
T PRK10473 223 VNTSPVLLMEQ----MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS---PSHAVS 295 (392)
T ss_pred HHhCHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 66778888777 69999999999999999999999999999999999998887777666655554432 122222
Q ss_pred HHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHH
Q 009268 414 IVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMV 491 (538)
Q Consensus 414 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~ 491 (538)
.....+.+.+.+..++.... .+..+. .+..|.+.++ ..++..+++.+.+++.+. ++.......+.
T Consensus 296 ~~~~~l~~~g~~~~~~~~~~--~~~~~~-------~~~~g~~~~~----~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 296 LFGITLICAGFSVGFGVAMS--QALGPF-------SLRAGVASST----LGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHH--HHhccC-------cccccHHHHH----HHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 23233333333333322222 222222 1223444444 445666666666666665 66544444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=261.48 Aligned_cols=345 Identities=13% Similarity=0.119 Sum_probs=250.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ +.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|++
T Consensus 21 ~~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l 88 (377)
T PRK11102 21 FGVS-------AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQLIYMRFL 88 (377)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHH
Confidence 7788 8999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+. ..+||+.|++.+++.++..++..+.+||
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE 168 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999887 4799999999888877766666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHH
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTF 333 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
+++..+.+ +. +.++...+.++.+++|.++...+..++.....+.+
T Consensus 169 ~~~~~~~~------~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T PRK11102 169 TLPKERRQ------PF-----------------------------HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF 213 (377)
T ss_pred cCcccccC------CC-----------------------------ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 53221100 00 00011123456788888887777777766667777
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-ccCchHHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT-YGSVSQTV 412 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 412 (538)
..+.|.++.+. +|+++.+.+.+.....++.++++++.+++.||+++|+.+..+..+..+..+.+... ....+.+.
T Consensus 214 ~~~~~~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T PRK11102 214 LTAGPFVYIEL----NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWA 289 (377)
T ss_pred HHcCHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77888888877 69999999999999999999999999999999999998887766544433332221 11122333
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhH-HHHHHhHHHHHHhhccCchHHHHHHHH
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS-VGAALGPLLTGFLSTQGWDAVFIMLMV 491 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~i~~~~~g~l~~~g~~~~~~~~~~ 491 (538)
..+...+.+.+.+.........+.+..| +.+|++.++.+.... +|..+++.+.+. .+.++...+...++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~ 359 (377)
T PRK11102 290 LVVGVAAFVGCVSMISSNAMAVILDEFP---------HMAGTASSLAGTLRFGIGAIVGALLSLA-PFTSAWPMVWSMAF 359 (377)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcccc---------ccchHHHHHHHHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHH
Confidence 2333333333333333333344444332 667888888776643 566666655433 22233333334444
Q ss_pred HHHHHHHHH
Q 009268 492 GALIAGLLL 500 (538)
Q Consensus 492 ~~~~~~~~~ 500 (538)
+.+++.++.
T Consensus 360 ~~~~~~~~~ 368 (377)
T PRK11102 360 CSILSILFY 368 (377)
T ss_pred HHHHHHHHH
Confidence 444433333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=263.76 Aligned_cols=346 Identities=14% Similarity=0.083 Sum_probs=251.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhc-----CChhh-HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTL-----DLRLF-LTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQ 179 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~ 179 (538)
.+++|.+ +.....+ ++.+++|+++||+ ||||. +..+.++.+++.+.+++. .+.++++.+.+.+++.|++.
T Consensus 46 ~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~--~~~~~l~~l~~~~~l~~~~~ 121 (491)
T PRK11010 46 LKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL--EPGTQLRWLAALAVVIAFCS 121 (491)
T ss_pred HHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHH
Confidence 7778876 3444444 5899999999999 99985 667777777777777664 22257889999999999999
Q ss_pred ccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009268 180 ATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPED 257 (538)
Q Consensus 180 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 257 (538)
+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ +|||..|++.+++.++. .+..++.||+++.
T Consensus 122 a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~-~l~~~~~~e~~~~ 200 (491)
T PRK11010 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPC-IIATLLAPEPTDT 200 (491)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH-HHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999888886 49999999988877665 3333446664321
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Q 009268 258 VGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWL 337 (538)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.+. ++ . ..+....++++.+++++.|...+..++..........+.
T Consensus 201 ~~~-------~~---~-------------------------~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~ 245 (491)
T PRK11010 201 IPV-------PK---T-------------------------LEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLT 245 (491)
T ss_pred ccc-------cc---c-------------------------hhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00 0 000011235567777777776666666666666777788
Q ss_pred HHHhhhcccCCcCCCcchhhhhhh-hhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hccCchHHHHHH
Q 009268 338 PFYLSQTEIGGEYLSVKTAGNLST-LFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR-TYGSVSQTVNIV 415 (538)
Q Consensus 338 ~~~l~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 415 (538)
+.|+.+. +|++..+.+.+.. ...++.+++.++.|+++||+++|+.+.++..+.++..+.+.. .....+.+....
T Consensus 246 ~~~l~~~----~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~ 321 (491)
T PRK11010 246 TTFLIRG----VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA 321 (491)
T ss_pred HHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 8888776 6999999999874 556799999999999999999988776655544443322211 111223333333
Q ss_pred HHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHH
Q 009268 416 LMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGAL 494 (538)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~ 494 (538)
..++..++.+...+...+...+..+. +..++..|+.+....+|..+++.+.|.+.|. ||+..|.+.+++.+
T Consensus 322 ~~~l~~~~~g~~~~~~~a~~~~l~~~--------~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 322 AVFFENLCGGMGTAAFVALLMTLCNK--------SFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 33443333333344455666666664 6678999999999999999999999999998 99999988888888
Q ss_pred HHHHHHHHH
Q 009268 495 IAGLLLSRL 503 (538)
Q Consensus 495 ~~~~~~~~~ 503 (538)
++.++....
T Consensus 394 ~~l~~~~~~ 402 (491)
T PRK11010 394 PGLLLLLVC 402 (491)
T ss_pred HHHHHHHHH
Confidence 876666554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=264.82 Aligned_cols=417 Identities=18% Similarity=0.205 Sum_probs=318.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
...+.|.+++..+++.+..+.....++++.+.++++ ++-+ .+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~-------------------------------f~~s-------~~ 81 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDY-------------------------------FGSS-------SS 81 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHH-------------------------------hCCC-------cc
Confidence 678899999999999999999999999999999887 5555 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHH-HHHHhhhccCchhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQ-MVAGLFQATGWPSV 186 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r-~l~G~~~g~~~~~~ 186 (538)
+++|+.++......+..|+.+.+.||+|.|.+.+.|.++.+++.++.+|+ +++|++++.. ++.|+|.|+.+...
T Consensus 82 ~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~-----~~i~~l~lt~gvi~G~G~~~~~~pa 156 (509)
T KOG2504|consen 82 QIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA-----TSLWQLYLTFGVIGGLGLGLIYLPA 156 (509)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhccchhhhcch
Confidence 89999999999999999999999999999999999999999999999999 9998877765 67899999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
..++..||+ |+|+.++|+..++.++|..+-|++.-++. .+|||+.+++.+.+.+-..+......|..+...+...++.
T Consensus 157 iviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~ 235 (509)
T KOG2504|consen 157 VVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDL 235 (509)
T ss_pred hhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhh
Confidence 999999986 59999999999999999988877776666 7899999999999887665555554443333211100000
Q ss_pred CCCCCCCCCCc--------cccccccc-cccccccCcccccCCC--Cccccc---hhhhhccCchHHHHHHHHHHHHHHH
Q 009268 266 PIPSSERLPND--------EESHMQKG-KTAAVENNSGIRYGSG--SRTSVG---LFQACLIPGVIPFAFCLFFAKLVAY 331 (538)
Q Consensus 266 ~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
+......+... .+...... ........+...++.. ..+... ..+++++|.++.+.+...+..+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~ 315 (509)
T KOG2504|consen 236 RNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFN 315 (509)
T ss_pred ccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHH
Confidence 00000000000 00000000 0000000000000000 111111 2588999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhhccCch
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTA--ATFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 409 (538)
....++|.|..+. |++..+++.+.++.++..++++++.|+++|+...++... ++.++.++..+... ...+
T Consensus 316 ~p~~~l~~~~~~~-----g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p---~~~~ 387 (509)
T KOG2504|consen 316 VPFVYLPSYAKSL-----GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP---FATT 387 (509)
T ss_pred HHHHHHHHHHhhc-----CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH---Hhcc
Confidence 9999999999976 999999999999999999999999999999987444333 33333333332222 2356
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHH
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFI 487 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~ 487 (538)
.+..+....++|++.+.........+.+.++. +....+.|+...+..++..+||++.|.+.|. +|...|+
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~--------~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGL--------EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--------hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 67778888899999888877777788888886 7788999999999999999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009268 488 MLMVGALIAGLLLSRLV 504 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~~~ 504 (538)
..+++.+++..+.++..
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 99999999887776665
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=262.44 Aligned_cols=346 Identities=18% Similarity=0.225 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhcCCccceecc-ccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 38 ITFIAYACYHASRKPSSIVKSV-LCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
..+++++..+.....+++..|. +.++ +|++ ..+.+++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~s-------~~~~~~~~~~~ 46 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDD-------------------------------LGLS-------TAQLGNLVAVP 46 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHH-------------------------------hCCC-------HHHhhHhhHHH
Confidence 4566677777777888888885 7766 7888 89999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHhhhccCchhhhhhhhcccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIH-AFGFYLIMQMVAGLFQATGWPSVVAVIGNWFG 195 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 195 (538)
.+++.++++++|+++||+|||+.++++.++.+++.++++++ + +++.+++.|+++|++.+ ..+....+++|++|
T Consensus 47 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 120 (366)
T TIGR00886 47 VLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-----VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFP 120 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998 8 99999999999999865 45667899999999
Q ss_pred cCccchhhHHHHHHHhhhHhHHHHHHHHHHH-----------hCchHHH-HHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 009268 196 KRKRGLIMGVWNAHTSVGNISGSLLAASVLD-----------YGWGWSF-ILPGASIVMGGIIVYLFLAAYPEDVGFPYA 263 (538)
Q Consensus 196 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-----------~gwr~~f-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 263 (538)
+++|++++++.....++|..+++.+++.+.. .+||+.| +..+++..+..++.+...+|.|+..+.+.+
T Consensus 121 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T TIGR00886 121 KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGK 200 (366)
T ss_pred HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchh
Confidence 9999999999998888888888777766552 2899999 444655555555555566665542211000
Q ss_pred CCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 264 NDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQ 343 (538)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (538)
. ..+ . . . .. ..+......++.+++|+++...+..++.....+.+..+.|.|+++
T Consensus 201 ~--~~~---~---~-~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T TIGR00886 201 L--SFK---G---A-R------WS-----------VGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKD 254 (366)
T ss_pred c--ccc---c---c-c------cc-----------ccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0 0 0 00 000011135677888998888888777777788889999999998
Q ss_pred cccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc-hHHHHHHHHHHHHH
Q 009268 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV-SQTVNIVLMMVAGL 422 (538)
Q Consensus 344 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 422 (538)
. +|+++.+++.+.....+.+++++++.|++.||+++|+....+......+..++....... +.+.......+.++
T Consensus 255 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
T TIGR00886 255 Q----FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF 330 (366)
T ss_pred H----cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 8 799999999999999999999999999999999998877666655555444443322211 44444444455555
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG 466 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (538)
+.+...+.......+..+ +.+|+++|+.+.+.++|
T Consensus 331 ~~g~~~~~~~~~~~~~~~---------~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR---------RATGAVSGLVGAIGNLG 365 (366)
T ss_pred Hhccccchhhhcchhhch---------hhcccHHHHHHHhccCC
Confidence 555555656666555543 67899999998887765
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=252.86 Aligned_cols=343 Identities=29% Similarity=0.478 Sum_probs=296.7
Q ss_pred HHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHH
Q 009268 39 TFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLA 118 (538)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l 118 (538)
+.+..+....+....+...|.+.++ +|.+ ..+.+++.+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-------~~~~~~~~~~~~~ 45 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED-------------------------------LGLS-------ASQAGLIVSAFSL 45 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH-------------------------------cCCC-------HHHHHHHHHHHHH
Confidence 4455666777777788888888766 5666 8899999999999
Q ss_pred HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCc
Q 009268 119 CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRK 198 (538)
Q Consensus 119 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 198 (538)
+..+++++.|+++||+|||+.+..+.++..++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++
T Consensus 46 ~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 120 (352)
T cd06174 46 GYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-----SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120 (352)
T ss_pred HHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q 009268 199 RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDE 277 (538)
Q Consensus 199 r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 277 (538)
|++.+++......+|..++|.+++.+. ..+||+.|++.+++.++..+...+ .+
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------- 174 (352)
T cd06174 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL------------------------- 174 (352)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH-------------------------
Confidence 999999999999999999999999888 467999999988877765444332 22
Q ss_pred ccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhh
Q 009268 278 ESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAG 357 (538)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g 357 (538)
|+++...+..++..........+.|.+..+. +|.+..+.+
T Consensus 175 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 214 (352)
T cd06174 175 ------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV----LGLSAAEAG 214 (352)
T ss_pred ------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----cCCCHHHHH
Confidence 3456677777888888888999999999987 689999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHH
Q 009268 358 NLSTLFDVGGIFGGIIAGYISDKLKARA-TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS 436 (538)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 436 (538)
.......++.+++.++.+++.||+++|+ .+..+..+..++.+.+.. ..+.+...+..++.|++.+...+.......
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 291 (352)
T cd06174 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL---APSLALLLVALLLLGFGLGFAFPALLTLAS 291 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 9999999999999999999999999998 777777776666555543 234566677788889999999999999999
Q ss_pred hhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 437 ADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 437 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+..|+ +.+++..|+.+...+++..++|.+.|.+.|. +|+..+++.+++.+++.++..
T Consensus 292 ~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 292 ELAPP--------EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred hhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 98885 8899999999999999999999999999987 999999988888887766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=258.27 Aligned_cols=340 Identities=12% Similarity=0.026 Sum_probs=260.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ ..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++ ++++.+++.|++
T Consensus 38 ~g~s-------~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 105 (395)
T PRK10054 38 YSLS-------VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVTLVVLFFAL 105 (395)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHH
Confidence 7888 9999999999999999999999999999999999999999999999999888 899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccC
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAY 254 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 254 (538)
.|.+.+...+...++..|.+|+++|++++++.....++|.++||++++++.+++||..|++.+++.++..++..+.+|++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 106 INCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888888888999999999999999999999999999999999999998888999999998877766545555556544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHH
Q 009268 255 PEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL 334 (538)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
+++.+.+ + + +..+.++.+++|+++...+..++..+....+.
T Consensus 186 ~~~~~~~-------~-----------------------------~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 226 (395)
T PRK10054 186 EKAIATE-------T-----------------------------G---SVWSPSVLLQDKALLWFTCSGFLASFVSGAFA 226 (395)
T ss_pred ccccccc-------h-----------------------------h---hhhhhhhhccCceehHHHHHHHHHHHHHHHhh
Confidence 3211000 0 0 00112567888998888777777766666666
Q ss_pred HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHH
Q 009268 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNI 414 (538)
Q Consensus 335 ~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
.+.+.|+.... +.+.+....+.+.....+..+......|++.||.++|+.+..+..+..+....+... ..+.+...
T Consensus 227 ~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 302 (395)
T PRK10054 227 SCISQYVMVVA--DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--GNSLLLWG 302 (395)
T ss_pred hhHHHHHHHhc--ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--chHHHHHH
Confidence 67777765430 135666777888888877777888889999999999988777766555554444321 23444445
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHH
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGA 493 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~ 493 (538)
+...+.+++.....+.....+.+..|+ +.++++++..+ ...+|..+||.+.|.+.|. ++...|++.+.+.
T Consensus 303 ~~~~~~~~g~~~~~p~~~~~~~~~~p~--------~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~ 373 (395)
T PRK10054 303 MSAAVFTVGEIIYAPGEYMLIDHIAPP--------GMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI 373 (395)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCc--------ccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 556677777666566666677676665 66788888655 6678999999999999999 8888877665555
Q ss_pred HHHHH
Q 009268 494 LIAGL 498 (538)
Q Consensus 494 ~~~~~ 498 (538)
++..+
T Consensus 374 ~~~~~ 378 (395)
T PRK10054 374 VAAWL 378 (395)
T ss_pred HHHHH
Confidence 54433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=261.74 Aligned_cols=334 Identities=18% Similarity=0.202 Sum_probs=247.4
Q ss_pred ccchhhHHHH-----HHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHH--------HHHHHH
Q 009268 106 TSKLGEIDLA-----FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG--------FYLIMQ 172 (538)
Q Consensus 106 ~~~~g~~~s~-----~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~--------~l~~~r 172 (538)
+.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.++++++ ++++ .+++.|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~r 103 (394)
T TIGR00883 29 DPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-----PSYATIGIWAPILLLLAR 103 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-----CChhhhHHHHHHHHHHHH
Confidence 4455554432 334445789999999999999999999999999999999998 7764 588999
Q ss_pred HHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH---------HhCchHHHHHHHHHHHHH
Q 009268 173 MVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL---------DYGWGWSFILPGASIVMG 243 (538)
Q Consensus 173 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~---------~~gwr~~f~~~~~~~~~~ 243 (538)
+++|++.+...+...+++.|++++++|++.+++...+..+|.+++++++..+. .++||+.|++.+++.++.
T Consensus 104 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG 183 (394)
T ss_pred HHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876653 368999999877665543
Q ss_pred HHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCc--hHHHHH
Q 009268 244 GIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPG--VIPFAF 321 (538)
Q Consensus 244 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 321 (538)
.......+|+++....+. ++++...+.++.+++++ ++...+
T Consensus 184 -~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T TIGR00883 184 -LYLRRNLEETPVFEKAQE------------------------------------KHKKKRGPIRETLTKHRKPFLLGLG 226 (394)
T ss_pred -HHHHHhcCCChhHHHHHh------------------------------------ccccccCCHHHHHHhchHHHHHHHH
Confidence 333344455433211100 00011123455666655 666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-H
Q 009268 322 CLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM-L 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~-~ 400 (538)
..++.....+....++|.|+++. +|.+..+.+.+.....++.+++.++.|++.||+++|+.+.....+..+... .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (394)
T TIGR00883 227 LVIATTTTFYLITTYLPTYLTQT----LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 77777777888889999999777 689999999999999999999999999999999999877655544443332 2
Q ss_pred HHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHH-HhHhHHHHHHhHHHHHHhhc
Q 009268 401 LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAII-DGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~ 479 (538)
+.......+.+......++.|++.+...+.....+.+.+|+ +.|+++.|+. +....+|..++|.+.|.+.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--------EVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--------cceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 22222223455555566777777777888888888888886 6778888874 45556788899999999999
Q ss_pred c-C-chHHHHHHHHHH
Q 009268 480 Q-G-WDAVFIMLMVGA 493 (538)
Q Consensus 480 ~-g-~~~~~~~~~~~~ 493 (538)
. + |...++...++.
T Consensus 375 ~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 375 MTGDWYAIGYYLAALA 390 (394)
T ss_pred HcCcchhHHHHHHHHH
Confidence 8 5 666655544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-30 Score=251.95 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=271.3
Q ss_pred HHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHHHH
Q 009268 41 IAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACY 120 (538)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~ 120 (538)
+.++..+.......+.+|.+.++ +|++ .+++|++.+.+.+..
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~-------------------------------~g~s-------~~~ig~~~s~~~~~~ 52 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKG-------------------------------IGLG-------EEMIGLLIGAALIAR 52 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------------cCCC-------HHHHHHHHHHHHHHH
Confidence 44555555545556667777766 7888 999999999999999
Q ss_pred HHHHhhhhhhhhhcCChhhH----HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccccc
Q 009268 121 SVGMFVAGHLGDTLDLRLFL----TTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGK 196 (538)
Q Consensus 121 ~~~~~~~G~l~dr~Grr~~l----~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 196 (538)
.++++++|+++||+|||+.. ..+..+..+ ..+.++ ++++.+++.|+++|.+.+...|...++..++ +
T Consensus 53 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~-----~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~ 123 (382)
T TIGR00902 53 FAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA-----HNAWLLFIAIGLFALFFSAGMPIGDALANTW--Q 123 (382)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh-----hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--H
Confidence 99999999999999985433 223222222 234455 8899999999999999988889988887665 4
Q ss_pred CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 009268 197 RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 275 (538)
++|++++|......++|.++||++++.+. ++|||..|++.+++..+ .++ .+.+++++++.+.. + +
T Consensus 124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~-~~~~~~~~~~~~~~--~----~------ 189 (382)
T TIGR00902 124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLI-GFLIKPTIPPKDAI--P----E------ 189 (382)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHH-HHHcCCCCCCCccc--c----c------
Confidence 68999999999999999999999999888 57999999887655332 222 23333322111000 0 0
Q ss_pred ccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch
Q 009268 276 DEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT 355 (538)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 355 (538)
++.++..+.++++|+|+++...+..++.......+..+.|.|+++. |.++.+
T Consensus 190 -----------------------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----g~s~~~ 241 (382)
T TIGR00902 190 -----------------------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA-----GISASA 241 (382)
T ss_pred -----------------------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHhH
Confidence 0001122356888999999998888888888889999999999876 999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAV 435 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 435 (538)
.|.+.....++.+++.++.+++.||++.|+.+..+.....+...+... .++.+..+...++-|+..+...+....++
T Consensus 242 ~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~q~l~g~~~~~~~~~~~~~i 318 (382)
T TIGR00902 242 TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA---IEAFPLIFLLQILHCGTFAVCHLAAMRYI 318 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988777777766555433 35666677778888988888888888888
Q ss_pred HhhcCCCcccccccchhHHHHHHHHh-HhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHH
Q 009268 436 SADLGTHSSVRGDSRALATVTAIIDG-TGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 436 ~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
.+. |+ +.+++.+++++. ...+|..++|.++|.+.|. ++ ..|...+++.+++.+
T Consensus 319 ~~~-~~--------~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 319 AAQ-PG--------SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HhC-CH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 765 54 677899999874 5678999999999999999 75 667777776665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=253.68 Aligned_cols=363 Identities=12% Similarity=0.076 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 37 LITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
..+++.++...+.....+++.|.++++ +|++ ..+.|++.+.+
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~-------------------------------~~~s-------~~~~g~l~s~~ 47 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQA-------------------------------FTLT-------AFQAALVQSAF 47 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------hCCC-------HHHHHHHHHHH
Confidence 344555555566667777888988877 7888 99999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGK 196 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 196 (538)
.+++.+++++.|++.||+|||++++.+.++++++.+++..+ ...++++.+++.|++.|+|.|...+..+.++.+..|+
T Consensus 48 ~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~--~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~ 125 (410)
T TIGR00885 48 YGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPA--AEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH
Confidence 99999999999999999999999999999999998886543 0116899999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhhhHhHHHHHHHHHHH---------------------------hCchHHHHHHHHHHHHHHHHHHh
Q 009268 197 RKRGLIMGVWNAHTSVGNISGSLLAASVLD---------------------------YGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---------------------------~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
++|++.+++.+...++|..+||.++..+.. .+||++|++.+++.++..++..
T Consensus 126 ~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~- 204 (410)
T TIGR00885 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM- 204 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999887741 3599999998887766533332
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLV 329 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
+.+ .|+.+..+ + ++.....+.++++|+|+++...+..++....
T Consensus 205 ~~~-~p~~~~~~-------~-----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~ 247 (410)
T TIGR00885 205 LTK-MPALNHSD-------A-----------------------------KQISFSASLSRLARIRHYREGVIAQFFYVGV 247 (410)
T ss_pred Hhc-CCCCCccc-------c-----------------------------ccccchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence 222 12111000 0 0000111235678889988888888888888
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCch
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
+.+..++++.|+++.. .+.+...++...+....+..+|+++++++.||+++|+.+.+......+..++.... ++
T Consensus 248 e~~~~s~l~~y~~~~~---~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~ 321 (410)
T TIGR00885 248 QIMCWTFIIQYAVRLI---PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---GG 321 (410)
T ss_pred HHHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CC
Confidence 8788899999997651 23444445556666668889999999999999999998777766666655554432 22
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-------Cc
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-------GW 482 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------g~ 482 (538)
. .....+.+.|++.+..+|...+...+.+++ +....+.++.. ..+|+++.|.+.|.+.|. ++
T Consensus 322 ~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~--------~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~ 390 (410)
T TIGR00885 322 H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQ--------DTKYGAAGLVM--AIIGGGIVPPLQGFIIDMKEIAAAPAV 390 (410)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhhhhHHHHHH--HHhccchHHHHHHHHHHHhcccccCcc
Confidence 2 335667778899999999999999988875 33222333333 339999999999999993 46
Q ss_pred hHHHHHHHHHHH
Q 009268 483 DAVFIMLMVGAL 494 (538)
Q Consensus 483 ~~~~~~~~~~~~ 494 (538)
+.+|++...+.+
T Consensus 391 ~~~~~~~~~~~~ 402 (410)
T TIGR00885 391 NTSFILPLLCFA 402 (410)
T ss_pred chHHHHHHHHHH
Confidence 677775444443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-29 Score=247.72 Aligned_cols=337 Identities=16% Similarity=0.168 Sum_probs=234.5
Q ss_pred CCCCCCCCCCCccchhhHHHHHHH-HHHHHHhhhhhhhhhcCChhhH-HHHHHHHHHHHHHHhccccccchhHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLA-CYSVGMFVAGHLGDTLDLRLFL-TTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQ 172 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r 172 (538)
+|++ .+++|++.+...+ ++.++.+++|+ +||+||||.+ +.+.++.+++.++.+++ ++++.+++.+
T Consensus 46 ~~~s-------~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 112 (393)
T PRK15011 46 VHAR-------PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN-----RNYFVLLFVG 112 (393)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHH
Confidence 7888 8999999776555 66666655566 9999999875 55666667778888887 8898887766
Q ss_pred HHHHhhhccCchhhhhhhhcccccCcc--chhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 173 MVAGLFQATGWPSVVAVIGNWFGKRKR--GLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 173 ~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
.+.|...+...|...+++.++.++++| +...++.+.+.++|.++||++++++. ++|||..|++.+++.++.+++.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 665555557788888888988876655 34457888899999999999999998 679999999998888777666677
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhcc-CchHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLI-PGVIPFAFCLFFAKL 328 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 328 (538)
.+||.++.++.. + .+ . + . ..++ +..+......+....
T Consensus 193 ~~~~~~~~~~~~--~---~~---------~------~------------~----------~~~~~~~~~~~~~~~~~~~~ 230 (393)
T PRK15011 193 FLPSMRKELPLA--T---GT---------L------E------------A----------PRRNRRDTLLLFVICTLMWG 230 (393)
T ss_pred hcCccCCCCccc--c---cc---------c------c------------c----------cccccccHHHHHHHHHHHHH
Confidence 777754321110 0 00 0 0 0 0011 122333333344444
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV 408 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
..+.+..+.|.|+++. +|+++.+++.+.+...++.+++.++.|+++||+++|+.+..+.....+....... ..
T Consensus 231 ~~~~~~~~~p~~l~~~----~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~ 303 (393)
T PRK15011 231 TNSLYIINMPLFIINE----LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---AH 303 (393)
T ss_pred HHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 5556677899999887 6999999998888777888889999999999999998776554443333222211 12
Q ss_pred hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHH
Q 009268 409 SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFI 487 (538)
Q Consensus 409 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 487 (538)
+.+......++.++..+...+.......+..| +.+|++.++++...++|..++|.+.|.+.|. +|+..|.
T Consensus 304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p---------~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~ 374 (393)
T PRK15011 304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMP---------GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFW 374 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33333334444444444434444455555554 4478999999999999999999999999998 9999988
Q ss_pred HHHHHHHHHHHHHHH
Q 009268 488 MLMVGALIAGLLLSR 502 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~ 502 (538)
+.+++.+++.++.+.
T Consensus 375 ~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 375 FALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777766555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=248.87 Aligned_cols=315 Identities=17% Similarity=0.182 Sum_probs=242.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ .++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+ ++++.+++.|++
T Consensus 30 ~~~s-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~ 96 (355)
T TIGR00896 30 LGMS-------FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----PGTALLFAGTAL 96 (355)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----ccHHHHHHHHHH
Confidence 7888 9999999999999999999999999999999999999999888888777 65 889999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-h--CchHHHHHHHHHHHHHHHHHHhhh
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-Y--GWGWSFILPGASIVMGGIIVYLFL 251 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~--gwr~~f~~~~~~~~~~~~~~~~~~ 251 (538)
.|++.+...+....++.|+++ ++|++++++...+.++|..+++.+++.+.+ . +||+.|...+++.++. ...++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~---~~~~~ 172 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA---LLAWI 172 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHh
Confidence 999999888888888999986 589999999999999999999999888763 2 3999998876654432 22234
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHH
Q 009268 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAY 331 (538)
Q Consensus 252 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
|+.+++.+.+ + +......++.+|+|.++...+..++....++
T Consensus 173 ~~~~~~~~~~-------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (355)
T TIGR00896 173 PQVRRRVAAN-------Q-------------------------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYY 214 (355)
T ss_pred hhhccccCCC-------C-------------------------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHH
Confidence 4332211000 0 0001123566788888877777777777888
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLK-ARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
....++|.|+++. |++..+.+.+.+...++.++++++.|++.||++ +|+....+..+..++.+.+... ....
T Consensus 215 ~~~~~lp~~~~~~-----g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 287 (355)
T TIGR00896 215 SLIGWLPAILISH-----GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-PMHG- 287 (355)
T ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-hhhH-
Confidence 8889999999876 899999999999999999999999999999995 5555555555554444433321 1111
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.. ....+.|++.+..++.....+....++ ++.++...++.+.+.+++..++|.+.|.+.|.
T Consensus 288 ~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 288 LW--AWALVLGLGQGGAFPLALTLIGLRSRQ-------AAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred HH--HHHHHHHHhhhhHhHHHHHHHHHhccC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234567888877777766666555443 36678889999999999999999999999987
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=252.40 Aligned_cols=359 Identities=14% Similarity=0.095 Sum_probs=238.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhc---cccccchhHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGM---GYFLDIHAFGFYLIM 171 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~---a~~~~~~~~~~l~~~ 171 (538)
+|++ ..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++...... +.......+...++.
T Consensus 41 ~g~s-------~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (420)
T PRK09528 41 NGLS-------GTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVG 113 (420)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788 999999999999999999999999999999999998876665544332211 100000011112233
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFL 251 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~ 251 (538)
+++.|.+.....+....+..+ . .+++++.+|......++|..++|++++.+.+.+|++.|++.+++.++..++.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 114 GIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence 333444333333333333322 2 34678889999999999999999999998888999999998877776544444443
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHH
Q 009268 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAY 331 (538)
Q Consensus 252 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
+++++....+ +++..+ +++....+.++.+|+|.++.+.+..+.....+.
T Consensus 192 ~~~~~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~ 240 (420)
T PRK09528 192 PDAPSTAKVA--NALGAN-----------------------------ASAVSLKDALALLKLPKFWFLVLYVIGVACFYD 240 (420)
T ss_pred ccccchhhhc--cchhcc-----------------------------cccccHHHHHHHccCCCeEeehHHHHHHHHHHH
Confidence 3332211100 000000 001112234567888888776665555555555
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
....+.|.|+.+.. ...+.+..+.+.+.+...++.+++.++.|++.||+++|+.+..+..+..+..+++.. ..+.+
T Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~---~~~~~ 316 (420)
T PRK09528 241 VFDQQFPNFFASFF-ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF---ATGPL 316 (420)
T ss_pred HHHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh---cccHH
Confidence 56666777776541 002456667888888888999999999999999999999887777766665444433 23455
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHH-HHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI-IDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
..+...++.|+..+...+....++.+.+++ +.+++..+. .++...+|.+++|.+.|++.|. ||+.+|...
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDV--------RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 555555666666555555556666777765 666766655 5777889999999999999998 999999988
Q ss_pred HHHHHHHHHHHHHHhh
Q 009268 490 MVGALIAGLLLSRLVI 505 (538)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (538)
+++.++..++.....+
T Consensus 389 ~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 389 GGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8887776665554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=240.18 Aligned_cols=349 Identities=16% Similarity=0.151 Sum_probs=275.5
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 105 GTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 105 ~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|+++...+++++++. +++++++++|.+||+|.++...
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-----~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-----NSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-----chhHHHHHHHHHhhhhHHHHHh
Confidence 38899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhhhhhcccccC-ccchhhHHHHHHHhhhHhHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009268 185 SVVAVIGNWFGKR-KRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262 (538)
Q Consensus 185 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 262 (538)
+..++++|.||++ +|++++|+...+.++|-++||++||.+++ .|.+.+|++.+++.++-..+.++.++.+..+.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--- 255 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--- 255 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc---
Confidence 9999999999876 47999999999999999999999999995 699999999999999987777776654332221
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
...+..++++++++|..+.........+.........++.++.
T Consensus 256 -------------------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~ 298 (464)
T KOG3764|consen 256 -------------------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWML 298 (464)
T ss_pred -------------------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHH
Confidence 1123345789999999988887777777777777788888888
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
+. ...+..+.|+.+....+...++..+.|.+.||++.-+.+.....+..++...... ...++....++..+..++
T Consensus 299 e~----m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i-P~~~~~~~L~vp~~~l~~ 373 (464)
T KOG3764|consen 299 ET----MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI-PFATSIAQLWVPNFGLGF 373 (464)
T ss_pred Hh----ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh-HhhhhHHHHhhhhHHHHH
Confidence 87 5655558999999999999999999999999998544443333333333222221 112344444555555566
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.+.............++..+.- .-+..|.++++......+|.++||.++|.+.+. |+++...+.++..++-.-+..
T Consensus 374 ~i~~~dasl~P~l~~lvd~rh~s--~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 374 GIGLADASLIPTLGYLVDPRHVS--GFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred HHHHHHHHHhhhhHHhcchhhcc--ccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555542210 012678999999999999999999999999999 999888888877777666655
Q ss_pred HHhh
Q 009268 502 RLVI 505 (538)
Q Consensus 502 ~~~~ 505 (538)
.++.
T Consensus 452 ll~~ 455 (464)
T KOG3764|consen 452 LLRI 455 (464)
T ss_pred HHHH
Confidence 5433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=241.43 Aligned_cols=331 Identities=16% Similarity=0.113 Sum_probs=244.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCCh----hhHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLR----LFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~ 170 (538)
+|+| ..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......+ +++|.+++
T Consensus 34 ~g~s-------~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~l~i 99 (382)
T PRK11128 34 QGYT-------PETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA-----HSFWLLFV 99 (382)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc-----ccHHHHHH
Confidence 6777 99999999999999999999999999999994 3333332222 22233344 78999999
Q ss_pred HHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
.|++.|++.+...|...+++.++ .++|+++++......++|.++||++++++. ++|||..|++.++..++. ++..+
T Consensus 100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~ 176 (382)
T PRK11128 100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQL 176 (382)
T ss_pred HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999988888877 357889999999999999999999999998 579999999877654443 33333
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLV 329 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
..||.+++. . + ++ ..++...++++++|+|.++...+..++....
T Consensus 177 ~~~~~~~~~-~---~---~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 220 (382)
T PRK11128 177 LRPTIMPQG-E---S---RQ-----------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQGS 220 (382)
T ss_pred ccCCCCCcc-c---c---cc-----------------------------ccccccchHHHHHcChhHHHHHHHHHHHHHH
Confidence 333321100 0 0 00 0001123467889999999888888877777
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCch
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
......+.|.|+.+. |.+..+.|.+.+...++.++..++.+++.||+++|+.+..+.....+..+++.. .++
T Consensus 221 ~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~---~~~ 292 (382)
T PRK11128 221 HAAYYGFSAIYWQAA-----GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS---TTA 292 (382)
T ss_pred hHhHHHHHHHHHHHC-----CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh---hhh
Confidence 777888889999775 899999999999888999999999999999999999988777666665444332 245
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHH-hHhHHHHHHhHHHHHHhhcc-CchHHHH
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIID-GTGSVGAALGPLLTGFLSTQ-GWDAVFI 487 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 487 (538)
.+..++..++.|++.+...+....+..+. ++ +.+++..++.+ ....+|..+||.+.|.+.|. ++ ..++
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~ 362 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG--------SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFW 362 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 56666677777887776666666665554 32 44578888887 44566779999999999998 66 4566
Q ss_pred HHHHHHHHH
Q 009268 488 MLMVGALIA 496 (538)
Q Consensus 488 ~~~~~~~~~ 496 (538)
..+++.+++
T Consensus 363 ~~~~~~~~~ 371 (382)
T PRK11128 363 VMALVALPA 371 (382)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=220.25 Aligned_cols=339 Identities=18% Similarity=0.225 Sum_probs=277.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|+| .+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-.. .+.+.++..-.+
T Consensus 42 ~gls-------~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~------~~~~~L~~gt~l 108 (395)
T COG2807 42 LGLS-------FSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL------GGLPLLFLGTLL 108 (395)
T ss_pred hccc-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHH
Confidence 8888 999999999999999999999999999999999999999999999999888 577889999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-Hh-CchHHHHHHHHHHHHHHHHHHhhhc
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DY-GWGWSFILPGASIVMGGIIVYLFLA 252 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~-gwr~~f~~~~~~~~~~~~~~~~~~~ 252 (538)
.|.|.+.......++|.+.||+ +-+..+|++.....+|..+++.++..+. +. |||......+.++++. ++.| +|
T Consensus 109 ~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA-l~~W--lP 184 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA-LLIW--LP 184 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH-HHHH--hh
Confidence 9999999999999999999985 8899999999999999999998888887 44 7999999999888775 3333 33
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHH
Q 009268 253 AYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYT 332 (538)
Q Consensus 253 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
...+.... ..+.+..+-.+++|+|..|.+.+.+.+.+..+|.
T Consensus 185 q~~r~~~~--------------------------------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~ 226 (395)
T COG2807 185 QALREQAA--------------------------------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYI 226 (395)
T ss_pred hccccccc--------------------------------------ccccccccccccccCchhHHHHHHHHhhHHHHHH
Confidence 32221100 1111222235789999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhccCchHH
Q 009268 333 FLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA-IPSMLLYRTYGSVSQT 411 (538)
Q Consensus 333 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 411 (538)
...|+|.++.|. |+|+.++|.+.+...+..++.++....+.+|...++.+.+....+. ++.+.+.+ .+....+
T Consensus 227 ~~~WLP~ili~~-----G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~-~P~~~~~ 300 (395)
T COG2807 227 VIGWLPAILIDR-----GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL-APGQLPI 300 (395)
T ss_pred HHHHHHHHHHHc-----CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH-hhhhHHH
Confidence 999999999998 9999999999999999999999999999998765555554444443 33333433 2222222
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHH
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIML 489 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~ 489 (538)
+ . .+++|++.++.++.....+.....+ .+..+...|+.+.++++-..+||.+.|++.|. +|...+...
T Consensus 301 l-w--~~llG~G~G~~F~laL~li~~rs~~-------a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l 370 (395)
T COG2807 301 L-W--ALLLGLGQGGAFPLALTLILLRSSD-------AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL 370 (395)
T ss_pred H-H--HHHHhCccchHHHHHHHHHHhhcCC-------hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence 2 2 4778999999999998888877665 57788889999999999999999999999999 899888887
Q ss_pred HHHHHHHHHHHHHHh
Q 009268 490 MVGALIAGLLLSRLV 504 (538)
Q Consensus 490 ~~~~~~~~~~~~~~~ 504 (538)
+.+.++..+.-+...
T Consensus 371 ~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 371 ALATLLMLIFGLRAG 385 (395)
T ss_pred HHHHHHHHHHHhhcc
Confidence 777776665555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=249.33 Aligned_cols=348 Identities=20% Similarity=0.208 Sum_probs=274.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
+..++++..+..+...+.++++|.++||++|||+++.+.++.++..++.++....+..+.|.+++.-++.|++.+...|+
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA 123 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA 123 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999988877666555543344468899999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
.++++.+.+|+++...++++.+...++..++||.++|.+. .+|-.++|.+.++..++. +......+.+++....+
T Consensus 124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~-i~~l~~~~~~~~~~~~~--- 199 (524)
T PF05977_consen 124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLIS-ILALLRWKPPPPPSSLP--- 199 (524)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccccccccccc---
Confidence 9999999999999999999999999999999999999887 578888999887755543 33333333221111000
Q ss_pred CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+ +. ..+.....++.+.++|.+....+..++.++....+...+|.+.++.
T Consensus 200 ----~----------------e~-----------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 200 ----R----------------ER-----------FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV 248 (524)
T ss_pred ----h----------------hh-----------hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 0 00 1111223345556677766665555666666666677789999888
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhh
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFV 424 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 424 (538)
+|.++...|++.+..++|+++|+++.+++.+|+++++.+..+.++.+++.+.+.. ..+.+...+.+++.|++.
T Consensus 249 ----l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal---~~~~~~~~~~l~l~G~~~ 321 (524)
T PF05977_consen 249 ----LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL---SPSFWLALIALFLAGAAW 321 (524)
T ss_pred ----hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998888877776666655544433 356677777888889988
Q ss_pred ccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 425 NGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
........+.++...|+ +.+|++++++.+....+..+|..+.|.+.+. |.+.++.+.+++.+++.++....
T Consensus 322 ~~~~~~~~t~~Q~~~P~--------~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 322 IIANSSLNTLVQLSVPD--------WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHhCCH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888886 8999999999999999999999999999998 88888887777666655555433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=245.07 Aligned_cols=344 Identities=10% Similarity=0.032 Sum_probs=250.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCC-hhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDL-RLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ ..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+. ++++.+++.|+
T Consensus 33 ~g~s-------~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 100 (418)
T TIGR00889 33 LHFS-------GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-----TTPAGMFPVLL 100 (418)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHH
Confidence 6778 9999999999999999999999999999965 778888888888888888887 89999999999
Q ss_pred HHHhhhccCchhhhhhhhcc--------cccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNW--------FGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY-GWGWSFILPGASIVMGG 244 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~-gwr~~f~~~~~~~~~~~ 244 (538)
+.|++.+...+...++..++ .....|.+.+| .+|.++||.+++.+... +|+ +|++.+++.++..
T Consensus 101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 99998887777766654222 22234455554 46888888888877422 344 4666666655543
Q ss_pred HHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHH
Q 009268 245 IIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF 324 (538)
Q Consensus 245 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (538)
+..+.+||.|+..+.+ +. . ..+....+.++++|+|+++.+.+..+
T Consensus 174 -~~~~~~~e~~~~~~~~------~~---~-------------------------~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 174 -VFALTLPDIPVAKSTA------KM---S-------------------------IKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred -HHHhcCCCCCCCcccc------cc---C-------------------------HHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 3455667654321100 00 0 00001112356788999888888877
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCcCCCc--------chhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSV--------KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+..........+.|.|+++. |.++ ...+...+...+..+++.++.|++.||+|+|+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v 293 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHEF-----GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWAL 293 (418)
T ss_pred HHHhHHHHHHHhHHHHHHHh-----cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 77666666777888888776 5443 5668888888999999999999999999999998888777666
Q ss_pred HHHHHHhhccCc-hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHH-hHhHHHHHHhHHHH
Q 009268 397 PSMLLYRTYGSV-SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIID-GTGSVGAALGPLLT 474 (538)
Q Consensus 397 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~ 474 (538)
...++....... +.+..++..++.|++.+...+.....+.+.+|+ +.+++++|+.+ +...+|.++||.+.
T Consensus 294 ~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~--------~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 294 RFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV--------HIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 544443311111 223444556677777776677777788888885 88999999997 56789999999999
Q ss_pred HHhhcc-------CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 475 GFLSTQ-------GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 475 g~l~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
|.+.|. ||+.+|.+.+++.+++.++..++.+
T Consensus 366 G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 366 GVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999986 3888998888888877777766655
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=236.92 Aligned_cols=381 Identities=14% Similarity=0.062 Sum_probs=264.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc-h
Q 009268 31 YRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK-L 109 (538)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~-~ 109 (538)
++...++++..+++.. .|.+.+++.|.+.+| +|++ ..| .
T Consensus 25 W~~~~~~lC~fGF~~e--~R~n~s~a~p~L~~e-------------------------------lglT-------~~qv~ 64 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQ--FRPGESFITPYLLTV-------------------------------LNFT-------EETVT 64 (511)
T ss_pred hhHHHHHHHHHHHHHH--hhchHHHHHHHHHHH-------------------------------cCCC-------HHHhc
Confidence 3333443444444443 489999999999887 8999 889 9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhh
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAV 189 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 189 (538)
|.+.++++.+++++++++|+++||+|.|+++.++.+.+++.+++.+++ ++++.+.+.|++.|++.|+.+ +...+
T Consensus 65 G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----~Sl~~L~i~R~llGvaEA~~~-A~~sy 138 (511)
T TIGR00806 65 NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----TSVWHMQLMEVFYSVTMAARI-AYSSY 138 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999999998 999999999999999999999 99999
Q ss_pred hhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHH--HHHHHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 009268 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILP--GASIVMGGIIVYLFLAAYPEDVGFPYANDPI 267 (538)
Q Consensus 190 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 267 (538)
+..|+|+++|+++.|+..++..+|.++++++++++..+|||+.+.+. ...+..+++++.+++|..++..-.+.++...
T Consensus 139 I~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~ 218 (511)
T TIGR00806 139 IFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR 218 (511)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc
Confidence 99999999999999999999999999999999997788999866543 3334445567778888555432222111000
Q ss_pred CCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 009268 268 PSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIG 347 (538)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (538)
.....+.+....+...+.+. ..+......-+.....+++..+||.++...+-+.+...+++.+.+|....-.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v--- 292 (511)
T TIGR00806 219 GALPCELDQMVPGPGGKLED---YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTL--- 292 (511)
T ss_pred cccccccccCCCCCccccch---hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHc---
Confidence 00000000000000000000 000000000011233445667888888888888888888888888887777666
Q ss_pred CcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccc
Q 009268 348 GEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGP 427 (538)
Q Consensus 348 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 427 (538)
..-.....|.+-++..+.+.+.++..|++-.++.+...+.++.....- ..+++......+.|..++..++++......
T Consensus 293 -~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~-~gll~~m~~t~~Iw~~Y~~yvlf~~~y~fl 370 (511)
T TIGR00806 293 -DESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQ-AGLVFWMSQSHDIWVLYVTYVLFRGIYQFL 370 (511)
T ss_pred -CCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHH-HHHhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 221223677777777888888899999986655332223322222222 222222234578888888888888887777
Q ss_pred hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 428 YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
.+....-++..+.. +..|..+|+++++..+-..+-..+
T Consensus 371 itia~~~iA~~L~~--------~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 371 VPIATFQIASSLSK--------ELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHHHhcc--------cceEEEEecHHHHHHHHHHheEEE
Confidence 77777777777764 677899999888776666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=241.36 Aligned_cols=343 Identities=18% Similarity=0.158 Sum_probs=241.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhc-----CChh-hHHHHHHHHHHHHHHHhccccccchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTL-----DLRL-FLTTGMVGSGIFVGLFGMGYFLDIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l 168 (538)
.|++ .+++|++..+... .+.++++|+++||+ |||| .++++.++.+++..+.++. .+..+++.+
T Consensus 29 ~g~~-------~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--~~~~~~~~l 97 (402)
T PRK11902 29 EGLD-------IQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--PPHAALWPL 97 (402)
T ss_pred cCCC-------HHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--CccchHHHH
Confidence 6888 9999999777765 58899999999999 8876 7888888888777777765 122468888
Q ss_pred HHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGII 246 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~ 246 (538)
++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+ +|||..|++.+++.++.. +
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~-l 176 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA-L 176 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH-H
Confidence 8888888988889999999999999999999999999999999999999998888875 499999999888776643 3
Q ss_pred HHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHH
Q 009268 247 VYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFA 326 (538)
Q Consensus 247 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (538)
..+..||+++....+ ++ ..++...++++++|+|.++...+..++.
T Consensus 177 ~~~~~~e~~~~~~~~------~~-----------------------------~~~~~~~~~~~l~~~~~~~~~l~~~~l~ 221 (402)
T PRK11902 177 TTLWAPEPEVPARPP------RS-----------------------------LGEAVVGPLRDFFSRRGAWALLLLIVLY 221 (402)
T ss_pred HHHhcCCCccccccc------ch-----------------------------hHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 345556543221100 00 0001122356788999988777766666
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhh-hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-h
Q 009268 327 KLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFD-VGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR-T 404 (538)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~ 404 (538)
.........+.+.++.+. +|+++.+.+++....+ ++.+++.++.|++.||+++|+.+..+.....+..+.+.. .
T Consensus 222 ~~~~~~~~~~~~~~l~~~----~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~ 297 (402)
T PRK11902 222 KLGDAFAGSLSTTFLIRG----AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLA 297 (402)
T ss_pred HhHHHHHHHHHHHHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444555566665 5999999999876654 468899999999999999988876655554443333221 1
Q ss_pred ccCchHHHHHHHHH----HHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 405 YGSVSQTVNIVLMM----VAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 405 ~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
....+.+......+ ..|+..+.........+.+..+ ++..++.+.+..++..+++.++|.+.|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~G~l~~~ 365 (402)
T PRK11902 298 VTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS------------ATQYALLSALASVGRVYVGPTSGYLVEA 365 (402)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223343333332 3334344444444444444333 3445666667778888777899999999
Q ss_pred -CchHHHHHHHHHHHHHHHHH
Q 009268 481 -GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 481 -g~~~~~~~~~~~~~~~~~~~ 500 (538)
||+..|.+.+++.+++.++.
T Consensus 366 ~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 366 YGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred hChHHHHHHHHHHHHHHHHHH
Confidence 99999988887777765544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=244.43 Aligned_cols=389 Identities=12% Similarity=0.105 Sum_probs=280.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
...+.+.+.+.+|.++|+++.|.++||+|||..+.++.++..++.+++.++. ..+++.+++++|++.|+..|......
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~--~~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK--SAPSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 3467789999999999999999999999999999999988888877777652 23789999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHH-H--HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-CC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASV-L--DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF-PY 262 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-~--~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~ 262 (538)
..++.|..|.+.||....+.+.+..+|..+|..++.-- . +-.|++.+.+..+++++. ++.+.++||+|++.-. ++
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcC
Confidence 99999999999999999999999999999997665432 2 346999999988887775 6778889999999766 44
Q ss_pred CCCCCCCCCCCCCccccccccccc--cccccCcccccCCCCccccchhhhhccCchHHHHHHHHH-----HHHHHHHHHH
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKT--AAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFF-----AKLVAYTFLY 335 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 335 (538)
+++++.+..+..+..++++.+.++ ...+.. +..+.+..++++++++|..+.-....+. ...+......
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~-----~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~ 291 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEE-----ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF 291 (485)
T ss_pred CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh-----ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence 544444433333322211111100 000000 0222356678899998776543222222 2233345667
Q ss_pred HHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCch---HH-
Q 009268 336 WLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVS---QT- 411 (538)
Q Consensus 336 ~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 411 (538)
|...++++. |++..++-+.....++..++.++++.++.||+|||.+++.+..++.+..+++.......+ .|
T Consensus 292 Yst~i~~~a-----G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (485)
T KOG0569|consen 292 YSTSIFKTA-----GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL 366 (485)
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777788887 999999999999999999999999999999999999999988888776666543221111 11
Q ss_pred --HHHHHHHHHHHhhccc-hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHH
Q 009268 412 --VNIVLMMVAGLFVNGP-YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFI 487 (538)
Q Consensus 412 --~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 487 (538)
..++..+++.++.+.+ .|....+.+|.+++ +.|+.++++..++..+...+-......+.+. |. ..|.
T Consensus 367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~--------~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~fi 437 (485)
T KOG0569|consen 367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ--------SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFI 437 (485)
T ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhH
Confidence 1234444444444444 45566666777776 8899999999999999999888888888887 54 5666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccccC
Q 009268 488 MLMVGALIAGLLLSRLVIAEITEKIRRPVTT 518 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (538)
.+.+..++..+.. +...+|+|+|...+..+
T Consensus 438 lF~i~~~~~~i~~-~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 438 LFVIPLAIFLIYL-YRYLPETKGRTPYEIIE 467 (485)
T ss_pred HHHHHHHHHHHHH-HHhCcccCCCCHHHHHH
Confidence 6666666555444 44456777666554433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=277.98 Aligned_cols=341 Identities=13% Similarity=0.029 Sum_probs=257.0
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHH---HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCc
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTT---GMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
...++..+++.+++.++++++|+++||+|||+++.. +.++..+..+.+... +++++++++|+++|++.+...
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~~~l~gi~~a~~~ 126 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-----NSVPLLFAALFLMGIHSALFG 126 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHhhc
Confidence 457888999999999999999999999999997643 222333333333344 789999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 262 (538)
|+..+++.+++++++|++++|+.+++.++|.++||++++++. ..+|++.|+..++..+ .+++..+.+|+++.......
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 205 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV-LGWLASLFIPKTGNAAPDLK 205 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHhhCCCCCCCCCCCe
Confidence 999999999999999999999999999999999999999988 5789999954444433 34555555655432211000
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
. .. . ..+.....++.+.++|.++...+..++.++....+..++|.|++
T Consensus 206 ~----~~---------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 253 (1140)
T PRK06814 206 I----DR---------N-------------------IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAK 253 (1140)
T ss_pred e----cc---------c-------------------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 00 0 00011123567788999999888888888888888899999999
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-----------------c
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT-----------------Y 405 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 405 (538)
+. +|.++...|++.+...++.++++++.|++.++..+++.+..+.++.++..+.+... .
T Consensus 254 ~~----~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 329 (1140)
T PRK06814 254 ET----LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL 329 (1140)
T ss_pred HH----cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence 98 79999999999999999999999999999988766665554444443333322221 1
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--Cch
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWD 483 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~ 483 (538)
...+.+..++..+++|++.+...+...+.+++..++ +.+|+++|+.+++.+++..+++.+.|.+.+. ++.
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~ 401 (1140)
T PRK06814 330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP--------AHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP 401 (1140)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc--------ccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 113455566677788888888888888999998886 8899999999999999999999999999854 666
Q ss_pred HHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAG 497 (538)
Q Consensus 484 ~~~~~~~~~~~~~~ 497 (538)
..+++.+++.++..
T Consensus 402 ~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 402 WIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=227.01 Aligned_cols=421 Identities=14% Similarity=0.143 Sum_probs=299.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
...+++|.+......+++...+.....+.+.|.+... .|.+ .
T Consensus 71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~-------------------------------w~~s-------~ 112 (528)
T KOG0253|consen 71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEV-------------------------------WGPS-------E 112 (528)
T ss_pred CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------------------------------hchh-------h
Confidence 4678899999999999999888888888888887766 5666 8
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
.|..++......+..+++..+|.++|++|||+.+.+..+..++...+.+.+ +|+..+++.|.+.|+|.|+ .|..
T Consensus 113 ~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-----pnf~~L~~f~~l~~~g~gg-~pv~ 186 (528)
T KOG0253|consen 113 GQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-----PNFASLCVFRALWGFGVGG-LPVD 186 (528)
T ss_pred hhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-----CCeehhhHHHHHHhccCCC-ccHh
Confidence 899999999999999999999999999999999999999999999999999 9999999999999999999 8999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
.++-.|..|..+|...+-.. ..+.+|.++...++.... ++||||..+..+.+..+. ....+++||+|+..-.+++++
T Consensus 187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~f~~w~~ESpRf~~~~G~~~ 264 (528)
T KOG0253|consen 187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-ARFLVWVYESPRFYLAKGDDY 264 (528)
T ss_pred HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HHHHhhcccCcchhhhcCChH
Confidence 99999999999999888777 999999999988877666 789999998888655554 667788999999877666655
Q ss_pred CCCCCCCCCCcccc----------ccccccccccccCcccccCCCCccccchhhhhc---cCchHHHHHHHHHHHHHHHH
Q 009268 266 PIPSSERLPNDEES----------HMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL---IPGVIPFAFCLFFAKLVAYT 332 (538)
Q Consensus 266 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 332 (538)
++.+..+++.+.+. ...++.|+..........+..++......+++. .+..+.....+|...+.+|+
T Consensus 265 kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg 344 (528)
T KOG0253|consen 265 KALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYG 344 (528)
T ss_pred HHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHH
Confidence 44332211111100 000000000000000000011122222233322 12334444555666666766
Q ss_pred HHHHHHHHhhhccc-CC--------------cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009268 333 FLYWLPFYLSQTEI-GG--------------EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP 397 (538)
Q Consensus 333 ~~~~~~~~l~~~~~-~~--------------~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 397 (538)
........++.... +. -..+...-..=.....+..+.|.++.+++.||+|||+.+....+++++.
T Consensus 345 ~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~if 424 (528)
T KOG0253|consen 345 SVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIF 424 (528)
T ss_pred HHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 55544444443200 00 0011111112234456788899999999999999999999999988887
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 398 SMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.+++.... ......+..+..-++..+.+...+.+.++.+|+ ..|+++.|.+..+..+|+++.|.++ ..
T Consensus 425 lfll~~c~---~rn~~tvllf~arafisg~fqvaYvYtPEVyPT--------avRatgvGtcSsmaRIggI~~p~iA-~~ 492 (528)
T KOG0253|consen 425 LFLLTTCK---TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT--------AVRATGVGTCSSMARIGGIFSPVIA-MR 492 (528)
T ss_pred HHHHHHhc---CcchhHHHHHHHHHHHhchheEEEEecCcccch--------hhhhcchhhhhhHHhhhhhhhhHHH-HH
Confidence 77766532 222334555666777888888899999999987 8899999999999999999999997 44
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 478 STQGWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 478 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
.+.+-..+..+.+.+.+++.+..+++..
T Consensus 493 ~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 493 AELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hccceeehHHHHHHHHHHHHHHheeeee
Confidence 4445555666677777777777766643
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=240.73 Aligned_cols=355 Identities=12% Similarity=0.065 Sum_probs=247.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHh---ccccccchhHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFG---MGYFLDIHAFGFYLIM 171 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~---~a~~~~~~~~~~l~~~ 171 (538)
+|++ ..+.|++.+.+.++..++++++|+++||+|||+.++.+++..+++..... +......+.+..+++.
T Consensus 33 ~g~s-------~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (396)
T TIGR00882 33 NGLS-------KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVG 105 (396)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6777 89999999999999999999999999999999999887766655443221 1100000223455677
Q ss_pred HHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhh
Q 009268 172 QMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFL 251 (538)
Q Consensus 172 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~ 251 (538)
|++.|++.+...+....++.+.. ++++..++......++|.++||++++.+.+++||..|++.+++.++..++.+...
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (396)
T TIGR00882 106 GLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAK 183 (396)
T ss_pred HHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhC
Confidence 88999998888888887777643 3445677888888999999999999988888999999998888877655544434
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHH
Q 009268 252 AAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAY 331 (538)
Q Consensus 252 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (538)
||+|++.... + ..+ . + +++.+..+.++.+|+|.++...+..++....+.
T Consensus 184 ~~~~~~~~~~-~---~~~---------~-------~-----------~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 232 (396)
T TIGR00882 184 PKAPSSATVA-N---ALG---------A-------N-----------ASAFSLKLALELFRQRKFWMFVLYVVGVACVYD 232 (396)
T ss_pred CCCchhhhhh-c---ccc---------c-------c-----------cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4332211000 0 000 0 0 011122346788899998877776666666666
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
....+.+.|+.+...+ .+.+....|.+.+...+...++.+..+++.||+++|+.+.++..+.++...+... ..+.+
T Consensus 233 ~~~~~~~~y~~~~~~~-~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~---~~~~~ 308 (396)
T TIGR00882 233 VFDQQFANFFTSFFAT-PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF---ATTAL 308 (396)
T ss_pred HHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---cCChH
Confidence 6666788888775100 1455566788888888888999999999999999999888777766665444332 23455
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHH-HHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI-IDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
......++.|++.............+..++ +.+++..+. .+....+|+.+++.+.|++.|. ||+.+|.+.
T Consensus 309 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~ 380 (396)
T TIGR00882 309 EVVILKMLHAFEVPFLLVGCFKYITSQFDV--------RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVL 380 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 555556666665433333333344444443 555665655 5678899999999999999998 999999998
Q ss_pred HHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLS 501 (538)
Q Consensus 490 ~~~~~~~~~~~~ 501 (538)
+++.++..++..
T Consensus 381 ~~~~~i~~~~~~ 392 (396)
T TIGR00882 381 GCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHH
Confidence 888877666544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=274.92 Aligned_cols=345 Identities=17% Similarity=0.083 Sum_probs=257.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....+++.+++.+++.++++++|+++||+|||++++++.++..+..+++.++. ..++++.++++|+++|++.+...++
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY--YLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHhhchH
Confidence 45579999999999999999999999999999999998877665555443320 0167999999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh----------CchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY----------GWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~----------gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
..++++|++|+++|++++|+...+..+|.++|+++++++... +|++.+.+..+...+.+++..+.+|+.+
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999998743 3455554444444443444455566655
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHH
Q 009268 256 EDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLY 335 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
+......+ ... . . ..+.....++.++++|.++...+..++.....+.+..
T Consensus 204 ~~~~~~~~---~~~---~-~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1146)
T PRK08633 204 AAAPEVFD---KKK---Y-L-----------------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQA 253 (1146)
T ss_pred CCCccccc---ccc---c-c-----------------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 43221100 000 0 0 0001122356677888888777777777777777888
Q ss_pred HHHHHhhhcccCCcCCCcc-hhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHH
Q 009268 336 WLPFYLSQTEIGGEYLSVK-TAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNI 414 (538)
Q Consensus 336 ~~~~~l~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
++|.|+.+. +|++.. ..+++.+...++.+++.++.+++.||+++++.+.++.++.+++.+++.. ..+.+..+
T Consensus 254 ~~~~~~~~~----~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 326 (1146)
T PRK08633 254 NFPAYAKEV----LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT---APSLASVL 326 (1146)
T ss_pred hhHHHHHHH----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH---hhhHHHHH
Confidence 999999888 799988 8999999999999999999999999999888777666665555444433 23555666
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHH
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVG 492 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~ 492 (538)
+..+++|++.+...+...+++.+..++ +.+|+++|+.+++..+|..+++.+.+.+... ++...+++.+.+
T Consensus 327 ~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 327 VLFFLFGFSAGLFIVPLNALIQFRAPE--------KELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCc--------cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 777788888888778888888887775 8899999999999999998888777766543 444455555544
Q ss_pred HHHHH
Q 009268 493 ALIAG 497 (538)
Q Consensus 493 ~~~~~ 497 (538)
.++..
T Consensus 399 ~~~~~ 403 (1146)
T PRK08633 399 TLIGT 403 (1146)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=219.35 Aligned_cols=354 Identities=17% Similarity=0.179 Sum_probs=280.6
Q ss_pred HHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHH
Q 009268 39 TFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLA 118 (538)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l 118 (538)
+...++.-.+......+++|.+++. |+++ ..+.+++...++.
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~-------------------------------f~ls-------~~~a~liqfaff~ 59 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEV-------------------------------FDLT-------YFEASLIQFAFFG 59 (422)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHH-------------------------------hCcc-------HHHHHHHHHHHHH
Confidence 3334444455556677889999877 7788 9999999999999
Q ss_pred HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCc
Q 009268 119 CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRK 198 (538)
Q Consensus 119 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 198 (538)
++.+++++.|++.+|+|+|+.++.++.++++++.+..-+ ....+|..++.+-++.|.|.+...++++.++....++++
T Consensus 60 gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA--a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 60 GYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA--ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred HHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 999999999999999999999999999999999998522 112789999999999999999999999999999999989
Q ss_pred cchhhHHHHHHHhhhHhHHHHHHHHHHH-------------------h-CchHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009268 199 RGLIMGVWNAHTSVGNISGSLLAASVLD-------------------Y-GWGWSFILPGASIVMGGIIVYLFLAAYPEDV 258 (538)
Q Consensus 199 r~~~~~~~~~~~~~g~~ig~~l~~~l~~-------------------~-gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 258 (538)
..+.+++.+..+++|.++||++++.+.. . .||++|...+...++..+.... . +.|+..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~-~-k~p~~~ 215 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL-S-KLPDLQ 215 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-c-cCCcCC
Confidence 9999999999999999999999887763 1 3788888877766654333222 2 222211
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 009268 259 GFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLP 338 (538)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
...++ ..+.+.....+++++|+++...++.|++-.....+.+|++
T Consensus 216 ~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~ 260 (422)
T COG0738 216 VAAPS-----------------------------------LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLV 260 (422)
T ss_pred ccccc-----------------------------------ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11000 0111111457889999999999999999999999999999
Q ss_pred HHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Q 009268 339 FYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMM 418 (538)
Q Consensus 339 ~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (538)
.|+.+. .|.+..++....+.+.++.++|++++.++.+|+...|.+........+.++..... .+ ...+..++
T Consensus 261 ~y~~~~----~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---~g-~v~~~~l~ 332 (422)
T COG0738 261 SYLEEL----LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---GG-VVALYALF 332 (422)
T ss_pred HHHHhc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh---cC-hHHHHHHH
Confidence 999996 59999999999999999999999999999999988888776665555444444331 23 45566778
Q ss_pred HHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHH
Q 009268 419 VAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFI 487 (538)
Q Consensus 419 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 487 (538)
+.|++++..+|...+...+.++.+. ...|....+..+|+++-|++.|++.|. +....+.
T Consensus 333 ~ig~F~simfPTIfslal~~l~~~t----------s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 333 LIGLFNSIMFPTIFSLALKNLGEHT----------SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHhHHHHHHHHHHHHhccCccc----------cccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 8899999999999999999988532 223444567779999999999999998 7666555
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-30 Score=237.40 Aligned_cols=439 Identities=15% Similarity=0.127 Sum_probs=305.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
..++++...+.+...+++.+.+|..+++.+.+-+....- +-++-..+..+
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~------------------------------~~~~~~g~~ps 83 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYY------------------------------HGDESGGHYPS 83 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhc------------------------------CCCCCCCcCCc
Confidence 346777788888899999999999999998887765421 11111122336
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccch--hHHHHHHHHHHHHhhhccCch
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIH--AFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 184 (538)
...+.+..+-.+|..+||++.|++.||+|||+++...+++..+++++++++...+.+ -++++...|++.|+|.|+-+|
T Consensus 84 ~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 84 GVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence 677899999999999999999999999999999999999999999998887544433 367899999999999999999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH----------------hCchHHHHHHHHHHHHHHHHHH
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD----------------YGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~----------------~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
...++.+|...+++||...+...+..+.|...|.+++-.+.. .=||..|.+.++++++. +...
T Consensus 164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~R 242 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFR 242 (538)
T ss_pred chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 999999999999999999999999899888888777665541 12999999877776664 6677
Q ss_pred hhhccCCCCCCCCCCC-CCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhc---cCchHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYAN-DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL---IPGVIPFAFCLF 324 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 324 (538)
+.+||+++......++ +.+.++.++....+.+..+..+...+ .+++....+...+. -+++...+..+|
T Consensus 243 l~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~--------~~~~~~~~F~~~f~~~hg~~Llgt~~~WF 314 (538)
T KOG0252|consen 243 LKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVP--------PPSNSFGLFSRLFLRWHGKHLLGTAGTWF 314 (538)
T ss_pred hcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCC--------CcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7888887765222111 00000000000000000000000000 11111111222222 244566677888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhh--------hhhh-hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGN--------LSTL-FDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~--------~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+...++|....+....++.. |+.+.+... ...+ ...+.++|..+...++|++||++..+.++.++.
T Consensus 315 llDiafy~~nL~~s~I~~~i-----g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~ 389 (538)
T KOG0252|consen 315 LLDIAFYGQNLFQSVIFSAI-----GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMT 389 (538)
T ss_pred hhhhhhhccccHHHHHHHhh-----ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHH
Confidence 89999999999999998876 655544333 1122 223344477777889999999999999999988
Q ss_pred HHHHHHHhhcc-CchHHHHHHHHHHHHHh-hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 396 IPSMLLYRTYG-SVSQTVNIVLMMVAGLF-VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 396 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
+..+.+...+. ..+....+++..+..++ ..+.........++.+|. +.|+++.|+..+.+..|++++...
T Consensus 390 i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa--------rvR~t~hGIsAA~GK~GAivg~~~ 461 (538)
T KOG0252|consen 390 IFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA--------RVRSTCHGISAASGKAGAIVGAFG 461 (538)
T ss_pred HHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH--------HHhhhhhhHHHHhccchHHHHHHH
Confidence 87777765433 22222333333333333 334444444555566665 999999999999999999999999
Q ss_pred HHHhhc-----c-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCC
Q 009268 474 TGFLST-----Q-GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTT 519 (538)
Q Consensus 474 ~g~l~~-----~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (538)
..++.+ . +.+.++++.+++..++.++.+++. |.+++..++.+++
T Consensus 462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p--Etk~~~leei~~e 511 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP--ETKGKSLEEISNE 511 (538)
T ss_pred hhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee--cccccCHHHhcCh
Confidence 999998 4 889999999999999887776664 6666665555433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=235.90 Aligned_cols=385 Identities=11% Similarity=0.067 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHH
Q 009268 36 LLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLA 115 (538)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~ 115 (538)
+..+++.+...++.....+.+++.+..|++. .....|+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~---------------------------------------~~~~~w~~~~ 86 (599)
T PF06609_consen 46 FAAFSLAVIAAYFVLVLPASILPYINADIGG---------------------------------------SDNWSWFSTA 86 (599)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCC---------------------------------------CccchHHHHH
Confidence 3345555555566666666777777776432 3456899999
Q ss_pred HHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccc
Q 009268 116 FLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFG 195 (538)
Q Consensus 116 ~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 195 (538)
+.++.+++.++.|+++|.||||.+++.+.++..+++++++.+ +|...++.+..+.|+|.|... .....++|..|
T Consensus 87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p 160 (599)
T PF06609_consen 87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----QNMNTFIAGMVLYGVGAGVQE-LAALAISELVP 160 (599)
T ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999 999999999999999977665 45666899999
Q ss_pred cCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCC
Q 009268 196 KRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLP 274 (538)
Q Consensus 196 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 274 (538)
.|.|....++......+....++.++..+. +-+|||.|++.++...+..++.+++. .+|++.+.++++....+..++.
T Consensus 161 ~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY-~PP~~~~~~~~~~s~~~~l~~l 239 (599)
T PF06609_consen 161 NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY-FPPPRAQLHGRKLSKREQLKEL 239 (599)
T ss_pred cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh-CCCchhhhccccCcHHHHHHHh
Confidence 999998888777766666667777776665 56899999999888777544444433 3333222221111111111111
Q ss_pred Ccccc------------------c--ccccccccccc---------CcccccCC-CCccccchhhhhccCc-hHHHHHHH
Q 009268 275 NDEES------------------H--MQKGKTAAVEN---------NSGIRYGS-GSRTSVGLFQACLIPG-VIPFAFCL 323 (538)
Q Consensus 275 ~~~~~------------------~--~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 323 (538)
+.... . ........+.. .-..++.. ..+++.-..+++|+++ +...+++.
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~ 319 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVIS 319 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHH
Confidence 11000 0 00000000000 00001111 1233444567888754 55556777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcCCCcc---hhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Q 009268 324 FFAKLVAYTFLYWLPFYLSQTEIGGEYLSVK---TAGNLSTLFDVGGIFGGIIAGYISDKLKARATTA-ATFMYAAIPSM 399 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~ 399 (538)
++.+..++....+.|...... ++-++. ..++.....+++..++.++.|.+..++++-|..+ ++..++.+.+.
T Consensus 320 fi~G~~~~s~~~l~p~~~~~v----f~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~G 395 (599)
T PF06609_consen 320 FISGMNFFSVNILWPQQVVNV----FGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCG 395 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----ccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 888888888888889888877 566553 5678888888999999999999999887766554 44334333223
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
++.. ...++....+...++.|++.+....+.....+-..|+ +..|++.|+...++.+|+.+|..+...+..
T Consensus 396 ama~-~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~--------~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 396 AMAA-VRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD--------EDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHH-ccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc--------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3332 2233444445667777887777666666665555554 889999999999999999999988766654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-28 Score=249.50 Aligned_cols=304 Identities=15% Similarity=0.189 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 37 LITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
+..++.++...+.....+.+++.+.++ |+++ ..+.|++.+.+
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~-------------------------------F~ls-------s~~~G~i~s~~ 77 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERR-------------------------------FKLS-------TSSSGLINGSY 77 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhh-------------------------------hCCC-------CCcceeeeehh
Confidence 444456777777788888888888877 8888 89999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccccc-----------------------------------
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLD----------------------------------- 161 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~----------------------------------- 161 (538)
.++++++.++.|+++||+|||+++.++.++++++++++++..+..
T Consensus 78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 157 (633)
T TIGR00805 78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ 157 (633)
T ss_pred hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence 999999999999999999999999999999999999998762100
Q ss_pred -----------chhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh---
Q 009268 162 -----------IHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY--- 227 (538)
Q Consensus 162 -----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~--- 227 (538)
...+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d 237 (633)
T TIGR00805 158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVD 237 (633)
T ss_pred cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc
Confidence 013567889999999999999999999999999999999999999999999999999999988732
Q ss_pred --------------------CchHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 009268 228 --------------------GWGWSFILPGASIVMGGIIVYLFLAAY-PEDVGFPYANDPIPSSERLPNDEESHMQKGKT 286 (538)
Q Consensus 228 --------------------gwr~~f~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (538)
+||..|++.+++.++.++++ +++|++ |+.......+. .+. +.....+. . ...
T Consensus 238 ~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~~~~~~~~--~~~-~~~~~~~~-~--~~~ 310 (633)
T TIGR00805 238 TGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKALPKEGKRVNVDV--HET-EKLEKSED-K--SRK 310 (633)
T ss_pred cccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccccCCcccccchhh--hhh-hccccccc-c--cch
Confidence 27778998888887765544 445543 32211100000 000 00000000 0 000
Q ss_pred cccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhh-
Q 009268 287 AAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDV- 365 (538)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~- 365 (538)
.. .+..+......+.++++|.++...+..++.....+++.+|+|.|+++. +|+++.+++++.....+
T Consensus 311 ~~--------~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~----~g~s~~~ag~l~~~~~i~ 378 (633)
T TIGR00805 311 KN--------SDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQ----YGISSAEANFLIGVVNLP 378 (633)
T ss_pred hh--------hhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHhhhhhhh
Confidence 00 001111234467889999999999999999999999999999999998 79999999999887766
Q ss_pred hhhhHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Q 009268 366 GGIFGGIIAGYISDKLK--ARATTAATFMYAAIP 397 (538)
Q Consensus 366 ~~~~~~~~~g~l~dr~~--~~~~~~~~~~~~~~~ 397 (538)
+.+++.+++|+++||++ .|+.+..+..+..+.
T Consensus 379 ~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 379 AAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 56889999999999987 445554444444333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=225.47 Aligned_cols=372 Identities=14% Similarity=0.068 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhH--H
Q 009268 36 LLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEI--D 113 (538)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~--~ 113 (538)
+..++..++.+........+..|...++ .|++ .+++|++ .
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-------------------------------~g~~-------~~~iGl~~~~ 44 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-------------------------------DGAP-------LTALAFLPLV 44 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------------------------cCCC-------HHHHHHHHHH
Confidence 4455666777777767777788888877 6777 9999997 4
Q ss_pred HHHHHHHHHHHhhh-hhhhhhcCChhhHHHHHHH-HHHHHHHHh-ccccccchhHHHHHHHHHHHHhhhccCchhhhhhh
Q 009268 114 LAFLACYSVGMFVA-GHLGDTLDLRLFLTTGMVG-SGIFVGLFG-MGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVI 190 (538)
Q Consensus 114 s~~~l~~~~~~~~~-G~l~dr~Grr~~l~~~~~~-~~i~~~~~~-~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 190 (538)
++..+...+.+|++ ++..||+||||..++.+.+ .++.....+ +. ........++..-++.++..+...+...++.
T Consensus 45 ~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~ 122 (390)
T TIGR02718 45 GLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVG--PDVAGAGWAVGLLACASLASATQDIATDGMA 122 (390)
T ss_pred HHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888 4479999999987665533 222222222 21 0012233444555666777788888888999
Q ss_pred hcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 009268 191 GNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPS 269 (538)
Q Consensus 191 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 269 (538)
.|+.++++++...+....+..+|.++|+...+++. ++|||..|++.+++.++..+..++..|+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~---------- 192 (390)
T TIGR02718 123 AEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE---------- 192 (390)
T ss_pred HHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc----------
Confidence 99998888898899998888999999998887777 6799999999998877654444333332221100
Q ss_pred CCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 009268 270 SERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGE 349 (538)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (538)
.++.+..+.++.+|+|.++...+..++..........+.+.|+++.
T Consensus 193 -----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~----- 238 (390)
T TIGR02718 193 -----------------------------APLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA----- 238 (390)
T ss_pred -----------------------------cchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-----
Confidence 0000112356788999888888887888777888888999999887
Q ss_pred CCCcchhhhhhhhhhh-hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHhhc
Q 009268 350 YLSVKTAGNLSTLFDV-GGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY---GSVSQTVNIVLMMVAGLFVN 425 (538)
Q Consensus 350 g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~ 425 (538)
|+++.+.|.+.....+ ..+++.++.|++.||+++|+.+..+..+..+..+...... ...+.........+.++..+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 9999999998887764 6667789999999999999988776655433222222111 01122222333334445555
Q ss_pred cchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHH
Q 009268 426 GPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
..++.......+..++ ++.+|+.+++.+...++|..++|.+.|.+.|. ||+..|...+++.+++.+
T Consensus 319 ~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGD-------GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHhCc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5666666666666543 26789999999999999999999999999998 999888887776666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=229.87 Aligned_cols=381 Identities=14% Similarity=0.067 Sum_probs=249.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHH-HHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG-FYLIMQ 172 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~-~l~~~r 172 (538)
+|++ .++.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++ .+.. .+++.|
T Consensus 45 lg~~-------~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-----~~~~~ll~~~~ 112 (489)
T PRK10207 45 LGFS-------QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-----LLKPDLIFIAL 112 (489)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHH
Confidence 6777 8889999999998888889999999999 999999999999999999999987 5544 455899
Q ss_pred HHHHhhhccCchhhhhhhhcccccC--ccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 173 MVAGLFQATGWPSVVAVIGNWFGKR--KRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 173 ~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
+++|+|.|...|...++++|++|++ +|++++++++.+.++|..+||.+++++. ++|||+.|++.++ +++.+++.+.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~ 191 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYF 191 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999876 4578999999999999999999999998 6899999999655 4444455555
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCC----------c-cc-cccccccccc------cccCcccccCCCCccccchhhhh
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPN----------D-EE-SHMQKGKTAA------VENNSGIRYGSGSRTSVGLFQAC 311 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~----------~-~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 311 (538)
..++..++...+++++. .+...... . .. .+........ ........+ +.+. .+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~-~~~~-----~~~~ 264 (489)
T PRK10207 192 ACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRE-AFKL-----DKTG 264 (489)
T ss_pred HcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HhcC-----CHHH
Confidence 54433222111110000 00000000 0 00 0000000000 000000000 0000 1445
Q ss_pred ccCchHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH---
Q 009268 312 LIPGVIPFAFC--LFFAKLVAYTFLYWLPFYLSQT-EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARA--- 385 (538)
Q Consensus 312 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~--- 385 (538)
|+|.+....+. ..+.+..+....+.++.|.++. .....|+.. ....+.+...+..++.+++.+++.||+++|+
T Consensus 265 r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 265 RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 55554433222 3344445555557778888753 100012211 1233444455667778888999999999886
Q ss_pred ----HHHHHHHHHHHHHHHHH----hhc---cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHH
Q 009268 386 ----TTAATFMYAAIPSMLLY----RTY---GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALAT 454 (538)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 454 (538)
.+.++..+.+++.+.+. ... ...+.++.+...++.|++.....+.....+.+..|+ +.+|.
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~--------~~~g~ 415 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ--------HLMGF 415 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH--------HHHHH
Confidence 35566666555443321 111 123567777788889999999999999999998885 88999
Q ss_pred HHHHHHhHhHHHHHHhHHHHHHhhc----------c-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 455 VTAIIDGTGSVGAALGPLLTGFLST----------Q-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 455 ~~g~~~~~~~~g~~i~~~~~g~l~~----------~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
++|+.+....+|+.++..+...... . .+...|...++..+++.++.+...
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765521 1 356677777776666666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=228.94 Aligned_cols=311 Identities=14% Similarity=0.102 Sum_probs=233.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhc-----CChhh-HHHHHHHHHHHHHHHhccccccchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTL-----DLRLF-LTTGMVGSGIFVGLFGMGYFLDIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~a~~~~~~~~~~l 168 (538)
+|+| .+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .+..+++.+
T Consensus 18 ~g~s-------~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~~~~~l~~l 86 (356)
T TIGR00901 18 KNVS-------LKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--VPSTDLPLL 86 (356)
T ss_pred cCCC-------HHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--CcchhHHHH
Confidence 7888 9999999655 555555 89999999998 89996 567777777777777665 223567778
Q ss_pred HHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC--------chHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG--------WGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g--------wr~~f~~~~~~ 239 (538)
.+..++.+++.+...++..+++.|++|+|+|+++.++...+..+|.++++.+++.+. ++| ||..|++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~ 166 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL 166 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence 888888899888899999999999999999999999999999999999999998877 567 99999998887
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCc---h
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPG---V 316 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 316 (538)
.++..+..++..||+.+.... .+ . +.++....+++++++|. +
T Consensus 167 ~l~~~~~~~~~~~e~~~~~~~-------~~---------~-------------------~~~~~~~~~~~~~~~~~~~~~ 211 (356)
T TIGR00901 167 ILPGLLVTLFLAKEPQEDASV-------PK---------P-------------------LTQAVLKPIREFFQRKNMIQA 211 (356)
T ss_pred HHHHHHHHHHhccCCCccccc-------ch---------h-------------------HHHHHHHHHHHHHHhcCchHH
Confidence 766433333344553221000 00 0 00001123456677765 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhh-hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFD-VGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+...+..++.....+....+.|.|+++. |++..+.+.+....+ +..+++.+++|++.||+|+|+.+..+..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 212 LLLLLLIVLYKLGDSAATVLTTLFLLDM-----GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666677777788888889999999885 999999998887665 5778999999999999999988877776666
Q ss_pred HHHHHHHhhc-cC-------chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhH
Q 009268 396 IPSMLLYRTY-GS-------VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS 464 (538)
Q Consensus 396 ~~~~~~~~~~-~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 464 (538)
+...++.... .. .+.+......++.+++.+...+...+...+..|+ +.+|+.+|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP--------KFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--------CccHHHHHHHHHHHh
Confidence 5544333221 11 2344455566677888888899999999999987 889999999877654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=234.10 Aligned_cols=338 Identities=13% Similarity=0.126 Sum_probs=249.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh----cCChh-hHHHHHHHHHHHHHHHhcccccc-chhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT----LDLRL-FLTTGMVGSGIFVGLFGMGYFLD-IHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~a~~~~-~~~~~~l 168 (538)
+|++ +.++|++.++..+..++..|+.|+++|| +|||| .++.+.+..+++.+++.+..... ...++.+
T Consensus 30 ~g~s-------~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 30 LGLS-------AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 7888 9999999999999999999999999998 67755 57778888888887776651000 0125677
Q ss_pred HHHHHHHHhhhccCchhhhhhhhccc-ccCccchhhHHHHHHHhhhHhHHHHHHHHHH--------HhCchHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWF-GKRKRGLIMGVWNAHTSVGNISGSLLAASVL--------DYGWGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 239 (538)
++.+++.+++.+...++..++..|.. +++||++..++.+.+..+|..+++.+.+.+. ..+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 78888999998888888888999987 4689999999999999998887766655443 24799999999988
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++..++.++..||+++..... ++ ++.+....+++++++|.++..
T Consensus 183 ~~~~~~~~~~~~~e~~~~~~~~------~~-----------------------------~~~~~~~~~~~l~~~~~~~~~ 227 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSEIPKN------IE-----------------------------KKLSLKQIFKALFKNDQLLIL 227 (437)
T ss_pred HHHHHHHHHcCCEecCCCCCcc------cc-----------------------------cCCCHHHHHHHHhCCHHHHHH
Confidence 8877666666667654211000 00 000112235677889998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
.+..++.....+....+.+.|.+.. ++ +....+.+.....++.+++.++.+++.||+|+|+.+..+..+.+++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 228 CLAYLFYNLAFNIKNGVQVYYFTYV----LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYL 302 (437)
T ss_pred HHHHHHHHHHHHHHcchhheeEeee----cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 8888877777776666666666655 45 455667777777899999999999999999999988887766665554
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
.+... ..+.+...+..++.|++.+...+...+.+.+..+.+ +.+...+.+|.+.|+.+++..+|..+++.+.|.+.+
T Consensus 303 ~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 303 IFFFA--GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYG-EWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 234445556666778887777777777777665532 222224678999999999999999999999999988
Q ss_pred c-Cc
Q 009268 480 Q-GW 482 (538)
Q Consensus 480 ~-g~ 482 (538)
. ||
T Consensus 380 ~~G~ 383 (437)
T TIGR00792 380 IIGY 383 (437)
T ss_pred HcCC
Confidence 6 55
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=238.56 Aligned_cols=350 Identities=15% Similarity=0.140 Sum_probs=245.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.+++ +|++.+++.|++.|++.++....
T Consensus 117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----PNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhhccchhHH
Confidence 6778899999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
...++.|++++++|+.+..+ ......++.++++.++++.. +||+.+++..++.++.. +.+++.||+|++...+++.+
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~-~~~~l~~Es~rwl~~~g~~~ 268 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFL-LLWFLPPESPRWLLSKGRID 268 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH-HHHHccCcChHHHHHcCchH
Confidence 99999999999999999999 77778888888888877776 89999999999888763 44666679999987766654
Q ss_pred CCCCCCCCCCcccccccccccccccc-CcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVEN-NSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+..+.+++..+.+.......+..... ..........++...+.++++.|++....+...+.++.......-++......
T Consensus 269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l 348 (521)
T KOG0255|consen 269 EAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL 348 (521)
T ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc
Confidence 44433332211110000000000000 00000001112234467788887654444444443333322232333333332
Q ss_pred ccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhh
Q 009268 345 EIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFV 424 (538)
Q Consensus 345 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 424 (538)
|.+.. ......+..........+...|++|||.....+..+..++.+...........+...+...+..++.
T Consensus 349 -----g~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 349 -----GGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI 420 (521)
T ss_pred -----CchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 43332 2333334466667777789999999999988888887777766655433222123444444555556
Q ss_pred ccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 425 NGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
+..+...+....+.+|+ ..|..+.+..+....++++++|.+.-....
T Consensus 421 ~~~~~~~~~~~~el~pt--------~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 421 GSAFNLIFLYSAELIPT--------VVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHhhccH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677778888889887 889999999999999999999988654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=219.99 Aligned_cols=384 Identities=13% Similarity=0.088 Sum_probs=257.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ ..+.|++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++ ++++.+++.|+
T Consensus 43 lg~s-------~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~ 110 (475)
T TIGR00924 43 LGFS-------QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----IYPDLIFYGLG 110 (475)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----ccHhHHHHHHH
Confidence 5777 8899999999999999999999999999 899999999999999999999998 78889999999
Q ss_pred HHHhhhccCchhhhhhhhcccccCc---cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRK---RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
+.|+|.|...+...++++|++|+++ |+.++++.+.+.++|.++||++++++. ++|||+.|++.++..++ +++.++
T Consensus 111 l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~-~~l~~~ 189 (475)
T TIGR00924 111 TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVI-GLLTFF 189 (475)
T ss_pred HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999998754 888999999999999999999999988 47999999998765444 344444
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCcccc----------------ccccccccccccC---cccc-cCCCCccccchhh
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEES----------------HMQKGKTAAVENN---SGIR-YGSGSRTSVGLFQ 309 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~ 309 (538)
..++..++...+++ +..+++++...... ......+...... .... .....++.....+
T Consensus 190 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (475)
T TIGR00924 190 AGRHMLRDIGSVPD--PLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVA 267 (475)
T ss_pred HcccccccCCCCCC--CcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 44432111111000 00000000000000 0000000000000 0000 0000000000011
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcc----hhhhhhhhhhhhhhhHHHHHHHHHHHHhHH-
Q 009268 310 ACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVK----TAGNLSTLFDVGGIFGGIIAGYISDKLKAR- 384 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~----~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~- 384 (538)
..|...+..+.+...+.+..+....+.++.+..+. .+.+.. ..+++.+...+..++..++..++..|.++|
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~----~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~ 343 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNN----MHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG 343 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 11222344455555566666666777778777664 233221 256777888888888777766655555543
Q ss_pred ----HH--HHHHHHHHHHHHHHHHhh---c---cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchh
Q 009268 385 ----AT--TAATFMYAAIPSMLLYRT---Y---GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRAL 452 (538)
Q Consensus 385 ----~~--~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (538)
.. +.++.++.+++.+.+... . ...+.++.+...++.+++.....+....++.+..|+ +.|
T Consensus 344 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~--------~~~ 415 (475)
T TIGR00924 344 KDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ--------RLM 415 (475)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--------HHH
Confidence 22 245555555544443321 0 134777888888899999999999999999998886 889
Q ss_pred HHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 453 ATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 453 g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
|+++|+......+|..+++.+.....+. ++...|...+++.+++.++.++..+
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877666 7777777777777766665554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=239.61 Aligned_cols=389 Identities=14% Similarity=0.076 Sum_probs=260.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
.+.+|+.+.+.++..++++++|+++|++|||+.++++.+++.++.++++++ +|+++++++|+++|+|.|......
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhhhcc
Confidence 456999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 264 (538)
..+++|..|++.||...+..+....+|..++..++....+ ++||..+.+..+.+++..+. .+++||+|++...+++.
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~ 242 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRL 242 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCCh
Confidence 9999999999999999999999999999999665555544 48999999999888887666 88899999987665444
Q ss_pred CCCCCCCCCCCccc-cccccccccccccCcccccCCCCccccchhhhhc----cCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009268 265 DPIPSSERLPNDEE-SHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL----IPGVIPFAFCLFFAKLVAYTFLYWLPF 339 (538)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
++..+......... .+...+.+... ... ............+.++++ ++..+...+..+...........|.+.
T Consensus 243 ~~a~~~l~~l~g~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~ 320 (513)
T KOG0254|consen 243 EEAKRSLKRLRGLSPEDVEVELELLK-IKL-LVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTT 320 (513)
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHH-HHH-HHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHH
Confidence 43333222211100 00000000000 000 000000001111223332 122223333444444444556777888
Q ss_pred HhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC---------chH
Q 009268 340 YLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGS---------VSQ 410 (538)
Q Consensus 340 ~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 410 (538)
+++.. |.+... .......++..+++..++..+.||+|||+.++.+...+.++.+++...... ...
T Consensus 321 if~~~-----g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (513)
T KOG0254|consen 321 IFKSA-----GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAG 394 (513)
T ss_pred HHHhc-----CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchh
Confidence 88877 666443 455556677788888888999999999999999888888777666442211 112
Q ss_pred HHHHHHHHHHHHhhccchhhHH-HHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALIT-TAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~ 488 (538)
+..++..+++-........+.. ....|.+|. +.|+.+.++......+...+-....-.+.+. +....|..
T Consensus 395 ~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~--------~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~ 466 (513)
T KOG0254|consen 395 WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL--------RLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGY 466 (513)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhccCcH--------hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 2223333333233333333333 455666664 8899999998888887776665554444444 33566666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 009268 489 LMVGALIAGLLLSRLVIAEITEKIRRPVT 517 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (538)
.+.+..+......++..+|++.+..++.+
T Consensus 467 f~~~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 467 FGGICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred HHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence 66666666653334444666666655443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=207.81 Aligned_cols=347 Identities=15% Similarity=0.159 Sum_probs=227.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....|.+.|.|++++.+.++.+|.++||+|||.++.+|++..++..++.+++ .||..+++.|++.|+..|-. .+
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----~~F~afv~aR~l~Gi~kgnl-~v 140 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----RNFAAFVLARFLGGIFKGNL-SV 140 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCch-HH
Confidence 5667999999999999999999999999999999999999999999999999 99977777799999987654 77
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh---CchHHHHHHHHHHHHHH----HHHHhhhccCCCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY---GWGWSFILPGASIVMGG----IIVYLFLAAYPEDV 258 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~---gwr~~f~~~~~~~~~~~----~~~~~~~~~~p~~~ 258 (538)
..++++|.+++++|+++++.+...+++|.++||.+|+++..+ .=+.+|.....+..+.+ ....+++||+-..+
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r 220 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLR 220 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence 789999999999999999999999999999999999999862 22333333222222222 22345667762221
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHH-------HHHHHHHHHHHHH
Q 009268 259 GFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIP-------FAFCLFFAKLVAY 331 (538)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 331 (538)
+.+ ++..+ ..+..+.+ ++ ..+.....-....||+.... +.+..+.+...+-
T Consensus 221 k~~---~~~~~-~~~~~~~~-------~~-----------~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s 278 (451)
T KOG2615|consen 221 KRN---DEHST-LQEAADDR-------LA-----------LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFS 278 (451)
T ss_pred hhc---ccccc-hhhhhhhh-------hh-----------hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 00000 00000000 00 00000111122334433222 2222333333333
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLK-ARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
...+..+.+-... +|+++.+.|.+++..++.+.+.+.......+|.. .-+........+++..+++... ....
T Consensus 279 ~~~~t~~~l~~~r----fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~--~~~~ 352 (451)
T KOG2615|consen 279 GLENTVLFLTHGR----FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL--ARTP 352 (451)
T ss_pred HHHhhHHHhhcCc----cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc--cccc
Confidence 3333333333444 7999999999999888888877777777776654 2222333334444444444332 2233
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~ 488 (538)
........+..+......+..+..+....++ ++||++.|+....+.++.++||.+.|.+... +-+.++..
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~--------~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~ 424 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ--------SQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIA 424 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc--------ccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeee
Confidence 4445555666666666667777777777665 8899999999999999999999999998876 44444443
Q ss_pred HHHHHH
Q 009268 489 LMVGAL 494 (538)
Q Consensus 489 ~~~~~~ 494 (538)
-+.+.+
T Consensus 425 ~~~L~~ 430 (451)
T KOG2615|consen 425 WGALLL 430 (451)
T ss_pred hHHHHH
Confidence 333333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-31 Score=271.79 Aligned_cols=384 Identities=17% Similarity=0.185 Sum_probs=265.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccch---hHHHHHHHHHHHHhhhccC
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIH---AFGFYLIMQMVAGLFQATG 182 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~---~~~~l~~~r~l~G~~~g~~ 182 (538)
..+.+++.+...+|..+|++++|.++||+|||+.++++.++..+++++.+++ + +++.+.++|+++|++.|..
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA-----PSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 4568899999999999999999999999999999999999999999999998 7 9999999999999999999
Q ss_pred chhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH----hCchHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 009268 183 WPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD----YGWGWSFILPGASIVMGGIIVYLFLAAYPEDV 258 (538)
Q Consensus 183 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~----~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~ 258 (538)
.+....++.|..|+++|++..++.+....+|..++..++..+.. .+||..+++.+++.++. ++..+++||+|++.
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL 198 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWL 198 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccee
Confidence 99999999999999999999999999999999998877655431 45999999988888765 55668899999999
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCc----hHHHHHHHHHHHH-HHHHH
Q 009268 259 GFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPG----VIPFAFCLFFAKL-VAYTF 333 (538)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~ 333 (538)
..+++.+++.+..++.++.+..+++..+...+.+ +.++....++++++++. ............+ .....
T Consensus 199 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (451)
T PF00083_consen 199 LSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKK------ESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI 272 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccceeeeeccccccccccccccccccccccccccccc
Confidence 8877777666655553322221111111110000 11111144556666533 2222222222222 22344
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--hhccCch--
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLY--RTYGSVS-- 409 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 409 (538)
..+.+.++++. |.+.. -.......+..+++.++..++.||+|||+.+..+..+++++.+.+. ......+
T Consensus 273 ~~~~~~i~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T PF00083_consen 273 FYYSPSIFENA-----GISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS 345 (451)
T ss_pred ccccccccccc-----ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45556666555 66655 2333344566667777888999999999998888777766655553 1111111
Q ss_pred --HHHHHHHHHHHHHhhc-cchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHH
Q 009268 410 --QTVNIVLMMVAGLFVN-GPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAV 485 (538)
Q Consensus 410 --~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~ 485 (538)
....++...+...+.+ +..+....+..|.+|+ +.|+++.|+....+.+++.+++.+...+.+. +....
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt--------~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 417 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT--------KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGV 417 (451)
T ss_pred ccccccceeeeeccccccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccc
Confidence 1122222222222223 3344445666888886 8889999999999999999999998888877 53556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 009268 486 FIMLMVGALIAGLLLSRLVIAEITEKIRRPVT 517 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (538)
+.+.+++.+++.++..+ ..+|++++..+|.+
T Consensus 418 ~~i~~~~~~i~~i~~~~-~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 418 FLIFAGVCLIAIIFVYF-FLPETKGKTLEEIQ 448 (451)
T ss_pred chhhHHHHHHHHhheeE-EEeeCCCCCHHHHH
Confidence 66666666665554443 34567666655543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=215.48 Aligned_cols=418 Identities=12% Similarity=0.045 Sum_probs=279.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
..+||.+++.......+.. ....++...+.+.++ +|++ ..+
T Consensus 23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~-------------------------------lgls-------~~~ 63 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQAR-------------------------------YNLT-------QRD 63 (591)
T ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------------------------------hCcC-------HHH
Confidence 3567776665555444433 234566777878776 8888 889
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccc-cchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFL-DIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
++++.++. .....++++.|++.||+|+|+++.++.+++++++++++++... -..+++.+++.|++.|+|.+...+...
T Consensus 64 l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~ 142 (591)
T PTZ00207 64 LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAV 142 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988774 4556778889999999999999999999999999999985110 014899999999999999999999999
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-CC---
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISG-SLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGF-PY--- 262 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig-~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~--- 262 (538)
..+.+||| ++||+++|+...+.++|.++. ++..+++ ..+|+..|++.+++.++.+++.+.+++++|..... ++
T Consensus 143 ~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~ 220 (591)
T PTZ00207 143 VTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF-SDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHL 220 (591)
T ss_pred HHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCC
Confidence 99999997 689999999999999999864 4444444 45799999999999999888888887776543221 11
Q ss_pred CCCCCC-CC--C----CC-------------------------------------------------------------C
Q 009268 263 ANDPIP-SS--E----RL-------------------------------------------------------------P 274 (538)
Q Consensus 263 ~~~~~~-~~--~----~~-------------------------------------------------------------~ 274 (538)
++++.. +. . ++ .
T Consensus 221 ~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~ 300 (591)
T PTZ00207 221 DEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTF 300 (591)
T ss_pred CHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 111100 00 0 00 0
Q ss_pred C--ccccccccccccc-c-----ccCcc--ccc--C-CCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009268 275 N--DEESHMQKGKTAA-V-----ENNSG--IRY--G-SGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341 (538)
Q Consensus 275 ~--~~~~~~~~~~~~~-~-----~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (538)
+ +.+.+.+.+..+. . ...+. ... + .......++++.+++..+|.+.+..++.......+.+.+....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~ 380 (591)
T PTZ00207 301 DGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIY 380 (591)
T ss_pred ccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHH
Confidence 0 0000000000000 0 00000 000 0 0011123778888899999999999998888877777787777
Q ss_pred hhcccCCcCCCcch--hhhhhhhhhhhhhhHHHHHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 342 SQTEIGGEYLSVKT--AGNLSTLFDVGGIFGGIIAGYISDKLKARA--------TTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 342 ~~~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
+.. -|.+.+. ...+.++.++++.+|++..|.+.....+|+ .......++.++.++++... +..
T Consensus 381 ~sl----~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~---p~~ 453 (591)
T PTZ00207 381 TAL----AGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL---PKA 453 (591)
T ss_pred HHh----cCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC---Ccc
Confidence 765 2553322 333778889999999999999884443333 12222222333333333322 113
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHh-HHHHHHhhcc----------
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALG-PLLTGFLSTQ---------- 480 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~-~~~~g~l~~~---------- 480 (538)
.+.+..++.|++.|..++.....+.+.+. +..|+-+-+.....-+|+.+- -.+.|.++|.
T Consensus 454 ~L~~~~~lvg~~~G~~~~~~~~i~selFg---------k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C 524 (591)
T PTZ00207 454 ALPLPYFIAAFANGFMAATIALVTRTIFA---------KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVC 524 (591)
T ss_pred HhHHHHHHHHHHhhHhHHHHHHHHHHHhc---------cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCee
Confidence 56777888999999999999999998887 455666666666666666665 4577888874
Q ss_pred -C---chHHHHHHHHHHHHHHHHHHHHh
Q 009268 481 -G---WDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 481 -g---~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
| ++..|.+++++.+++.++...+.
T Consensus 525 ~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 525 TERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred CCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 1 56888888888888877765543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-22 Score=202.16 Aligned_cols=385 Identities=14% Similarity=0.089 Sum_probs=229.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ .++.+++.+.+........+++|+++|| +|||+.++++.++.+++.++++++ .++.+.+++.|+
T Consensus 52 lg~s-------~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----~~~~~~l~~~~~ 120 (500)
T PRK09584 52 LGMS-------EADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----GHDAGIVYMGMA 120 (500)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHH
Confidence 7787 7888888888876766777899999999 599999999999999999998886 135667788899
Q ss_pred HHHhhhccCchhhhhhhhcccccCc--cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRK--RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++. ++|||+.|++.++..++.. +.+++
T Consensus 121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~-i~~~~ 199 (500)
T PRK09584 121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV-VNFAF 199 (500)
T ss_pred HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999998643 456889999999999999999999998 5799999999776544432 22222
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCc-----------ccc-ccccccccccccCcccccCCCCccccchhhhhccCchHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPND-----------EES-HMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIP 318 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
.+...++...+++.++.+. ...... ... ...+..+......................+.-+ ++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 277 (500)
T PRK09584 200 CQRWVKQYGSKPDFEPINY-RKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAAR-RKMIV 277 (500)
T ss_pred hHHHhccCCCCCCccccch-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-HHHHH
Confidence 2211111100000000000 000000 000 000000000000000000000000000011111 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccC-----CcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHh----HHHHHHH
Q 009268 319 FAFCLFFAKLVAYTFLYWLPFYLSQTEIG-----GEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLK----ARATTAA 389 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~----~~~~~~~ 389 (538)
. +..++....++......|.++.....+ ..|+. ...+++.+...+..++..++.+++-+|.+ ..+.+.+
T Consensus 278 ~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~ 355 (500)
T PRK09584 278 A-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAI 355 (500)
T ss_pred H-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHH
Confidence 2 223344445555555566665431000 01111 12445566666666666666655555544 4466777
Q ss_pred HHHHHHHHHHHHHhhcc------CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHh
Q 009268 390 TFMYAAIPSMLLYRTYG------SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG 463 (538)
Q Consensus 390 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 463 (538)
+..+.+++.+.+..... ..+.++.+...++.|++.....|....++.+..|+ +.||+++|+.....
T Consensus 356 G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~--------~~rg~~~g~~~l~~ 427 (500)
T PRK09584 356 GMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ--------RLMGFIMGSWFLTT 427 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH--------HHHHHHHHHHHHHH
Confidence 77777776666543211 12355677788888999999999999999988886 89999999887766
Q ss_pred HHHHHHhHHHHHHhhc----------c-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 464 SVGAALGPLLTGFLST----------Q-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 464 ~~g~~i~~~~~g~l~~----------~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
.+|..++..+.+.... . ++...|...+++.++.+++.+..
T Consensus 428 a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 428 AGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666543211 1 36677777777666555444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=186.29 Aligned_cols=362 Identities=15% Similarity=0.085 Sum_probs=251.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccc
Q 009268 29 TTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSK 108 (538)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 108 (538)
..+|...++..|+.-+-+|+.--..+.+......| .+++ .++
T Consensus 39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------------------------------~ni~-------~ak 80 (459)
T KOG4686|consen 39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLD-------------------------------SNIE-------YAK 80 (459)
T ss_pred hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcc-------------------------------cccc-------eee
Confidence 45566666666666666666655555444444433 5555 788
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
.-++.+.|+....+.++++|++.|| +|.|..-++-++...++.++++...+ .+.+|++..+||+.|+|.-...++-+
T Consensus 81 ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi--~~aFw~M~~GRF~FGIGgESlAVaQN 158 (459)
T KOG4686|consen 81 FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI--SHAFWTMLAGRFLFGIGGESLAVAQN 158 (459)
T ss_pred eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH--HHHHHHHHhhheeeccCchhhhhhhc
Confidence 9999999999999999999999996 68887666655666677766654311 27899999999999999888888889
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh-C------chHH---HHHHHHHHHHHHHHHH---hhhccC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY-G------WGWS---FILPGASIVMGGIIVY---LFLAAY 254 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~-g------wr~~---f~~~~~~~~~~~~~~~---~~~~~~ 254 (538)
.++.-||..||.+.++|+..+..-+|+.+--.+.+++.+. + =+.. .+..+.......+... -+..+.
T Consensus 159 ~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~r 238 (459)
T KOG4686|consen 159 KYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDR 238 (459)
T ss_pred ceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 9999999999999999999999999998877666666631 1 0111 1111111111111111 111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHH
Q 009268 255 PEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL 334 (538)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
.+...+. ++.... +++ + ..-.+-+ .|.+|.+.+..++.....+.+.
T Consensus 239 -Aerilh~-e~g~~G---------------e~p---------------k-Ltdv~~f-~ppfw~~~iicv~yyva~fPFi 284 (459)
T KOG4686|consen 239 -AERILHL-EEGFLG---------------EEP---------------K-LTDVNTF-YPPFWVLVIICVLYYVAWFPFI 284 (459)
T ss_pred -HHHHHhh-hcCccc---------------CCc---------------c-ccccccc-CccHHHHHHHHHHHHHHHHHHh
Confidence 1000000 000000 000 0 0001112 3779999999999999999999
Q ss_pred HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHH
Q 009268 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNI 414 (538)
Q Consensus 335 ~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
..-|.++++. +|+|+..++.+.+.......+.+++.|.++||+|++...+....+..+..-....+ ..+..+
T Consensus 285 ~lg~~fF~~r----fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy 356 (459)
T KOG4686|consen 285 TLGPMFFQKR----FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPY 356 (459)
T ss_pred hhhHHHHHHh----hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHH
Confidence 9999999999 89999999999998888888999999999999999988877776665554444332 222234
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
+.+.+.|.............++..+|. ++.|+++|.+..+.++|-++.|.+.|.+.|.
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE--------~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPE--------EQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCH--------HHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 455566666555444455556666664 8899999999999999999999999999998
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=194.39 Aligned_cols=345 Identities=17% Similarity=0.177 Sum_probs=253.5
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcC-ChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLD-LRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
.|+| ..|+|.+.+...+...++++++|.++||.+ +||++.+..++.++..+..... ++++.++...+
T Consensus 32 ~G~s-------~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~-----~~f~~~~~~~~ 99 (400)
T PF03825_consen 32 RGFS-------GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS-----SSFWWLFVIML 99 (400)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHH
Confidence 5777 999999999999999999999999999986 5677878778777777677676 88998988888
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHH-HHHHH-HhC---chHHHHHHHHHHHHHHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLL-AASVL-DYG---WGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l-~~~l~-~~g---wr~~f~~~~~~~~~~~~~~~ 248 (538)
+..+......|...++.-+... +++.-.|-.....++|.+++... ++.+. ..+ ....+++.++..++. ....
T Consensus 100 l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll-~~~~ 176 (400)
T PF03825_consen 100 LFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLL-AGFA 176 (400)
T ss_pred HHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH-HHHH
Confidence 8898888888999999888875 56667788888888888877544 23333 222 234566666555443 2334
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKL 328 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+.+|+.|.++..+.+ .++....+..+++|+|+++...+..++...
T Consensus 177 l~lp~~~~~~~~~~~-----------------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~ 221 (400)
T PF03825_consen 177 LFLPKTPPKRSAKES-----------------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGI 221 (400)
T ss_pred HhCCCCccccccCCC-----------------------------------cccccchHHHHHhcCccHHHHHHHHHHHHH
Confidence 556766522211100 111122234678999999999899999999
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV 408 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
......++.+.|+++. -|.+....+.+.++..++.++.-...+++.+|+|.++++.++....++=..+..... +
T Consensus 222 ~~~~~~~f~~~yl~~~----gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--~ 295 (400)
T PF03825_consen 222 SHAAYYTFFSIYLQEL----GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--D 295 (400)
T ss_pred HHHHHHHHHHHHHHHc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 9999999999999998 237888888888888899999999999999999999999888887777655554421 2
Q ss_pred hHHHHHHH----HHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH-hHHHHHHhHHHHHHhhcc-Cc
Q 009268 409 SQTVNIVL----MMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT-GSVGAALGPLLTGFLSTQ-GW 482 (538)
Q Consensus 409 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~i~~~~~g~l~~~-g~ 482 (538)
+.+..... ..+-|+..+..+.....++.+..|+ +.++++.|+++.. ..+|..+|..++|++.|. +.
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~--------~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP--------ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc--------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 22222222 2357887778888888899888886 8899999998876 479999999999999998 54
Q ss_pred hH------HHHHHHHHHHHHHHHHHHH
Q 009268 483 DA------VFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 483 ~~------~~~~~~~~~~~~~~~~~~~ 503 (538)
+. .+.+.+++.++..++..++
T Consensus 368 ~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 368 RGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 3444444444444444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=204.08 Aligned_cols=336 Identities=14% Similarity=0.031 Sum_probs=232.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh----cCChh-hHHHHHHHHHHHHHHHhccccc-cchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT----LDLRL-FLTTGMVGSGIFVGLFGMGYFL-DIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~a~~~-~~~~~~~l 168 (538)
+|++ ..++|.+.++..+..++..|+.|.++|| +|||| .++.+.+..+++.++....... ....++.+
T Consensus 40 ~gls-------~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 40 FGLS-------AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 7888 9999999999999999999999999999 77755 5666777777776555443100 01235566
Q ss_pred HHHHHHHHhhhccCchhhhhhhhccc-ccCccchhhHHHHHHHhhhHhHHHHHHHHHH--------HhCchHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWF-GKRKRGLIMGVWNAHTSVGNISGSLLAASVL--------DYGWGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 239 (538)
++..++.+.+......+..++.+|+. +++||++..++......+|..+++.+...+. +.+|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66777777777777777889999988 5578999989888888888887766544333 24688888888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++..+..++..+|.++... + ++.+.....+.++|||.++.+
T Consensus 193 ~~v~~~~~~~~~~e~~~~~~---------~-----------------------------~~~~~~~~~~~~~~n~~~~~l 234 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTPEV---------D-----------------------------NSSSVWKDLKLLLGNSQWRIM 234 (444)
T ss_pred HHHHHHHHhCCeEEecCCCC---------c-----------------------------CCCCHHHHHHHHhCCchHHHH
Confidence 77665555555555322110 0 011122345778899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
.+..++............+.|.+.. .+ ++...+.+.....+..+++.++.+++.||+|+|+....+.....+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 235 FIFNVVLLTAVVTRGGATLYYVNYV----LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHHhhhhheeeeee----cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 7777666555544444444444433 22 233344455556677888889999999999999988877655544333
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
.+.. .+..+.+..++..++.|++.+...+...+.+++.++.++...+ ++..|..+|+.+++..+|.++++.+.|.+.+
T Consensus 310 ~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G-~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 310 LIFF-IPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG-RRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2234555566667788888888888888888776653332222 3667889999999999999999999999988
Q ss_pred c-Cc
Q 009268 480 Q-GW 482 (538)
Q Consensus 480 ~-g~ 482 (538)
. ||
T Consensus 388 ~~Gy 391 (444)
T PRK09669 388 WVDY 391 (444)
T ss_pred HcCC
Confidence 7 65
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=204.98 Aligned_cols=342 Identities=9% Similarity=0.031 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhh----hcCCh-hhHHHHHHHHHHHHHHHhcccc-ccchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGD----TLDLR-LFLTTGMVGSGIFVGLFGMGYF-LDIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr-~~l~~~~~~~~i~~~~~~~a~~-~~~~~~~~l 168 (538)
+|++ +.++|.+..+..+.-++..|+.|.++| |+||| +.++.+.+..+++.+++..... .....+..+
T Consensus 37 ~Gls-------~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 37 VGLS-------VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 6888 999999999999999999999999999 56995 5666777777777666543200 000124456
Q ss_pred HHHHHHHHhhhccCchhhhhhhhccc-ccCccchhhHHHHHHHhhhHhHHHHHHHHHH--------HhCchHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWF-GKRKRGLIMGVWNAHTSVGNISGSLLAASVL--------DYGWGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 239 (538)
++..++.+++.....+...+++.|.. +++||.+..++...+.++|..+.+.+...+. ..+|+....+.+++
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66667778888888888999999998 5789999999877777777666554443321 12567777777766
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++..+..++..||.+.....+.+ ++ ++.+....++.+++||.++.+
T Consensus 190 ~~~~~~~~~~~~~e~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~n~~~~~l 236 (473)
T PRK10429 190 FIVSTIITLRNVHEVYSSDNQVSA----EG-----------------------------SHLTLKDIVALIYKNDQLSCL 236 (473)
T ss_pred HHHHHHHHHcCceecCCccccccc----cc-----------------------------cCCCHHHHHHHHhcCHHHHHH
Confidence 665545555555664321110000 00 011122234556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
++..++.+...+....+.+.|.+.. ..+....+.+.+...++.+++.++.+++.||+|+|+.+..+..+..++.+
T Consensus 237 l~~~~~~~~~~~~~~~~~~y~~~y~-----~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~ 311 (473)
T PRK10429 237 LGMALAYNIASNIINGFAIYYFTYV-----IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG 311 (473)
T ss_pred HHHHHHHHHHHHHHhhheeeEEEEE-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 7777777777766666666565554 33455566677777788899999999999999999998877665554444
Q ss_pred HHHhh--ccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 400 LLYRT--YGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 400 ~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.+... ....+.+..++..++.|++.+.......+++++.++.++ .+..+|..|..+|..+++..++..+++.+.|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e-~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 312 VLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE-YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 223344555556667777777777777777877665432 334457788999999999999999999999999
Q ss_pred hcc-Cc
Q 009268 478 STQ-GW 482 (538)
Q Consensus 478 ~~~-g~ 482 (538)
.+. ||
T Consensus 391 l~~~Gy 396 (473)
T PRK10429 391 LGLIGY 396 (473)
T ss_pred HHHcCC
Confidence 875 55
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=195.12 Aligned_cols=366 Identities=13% Similarity=0.042 Sum_probs=254.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhh----hcCChhhHHHH-HHHHHHHHHHHhccccccchhHH---
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGD----TLDLRLFLTTG-MVGSGIFVGLFGMGYFLDIHAFG--- 166 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~i~~~~~~~a~~~~~~~~~--- 166 (538)
+|.+ ....+++..+..+...+.+|+.|+++| |+||||.++++ .+...++.++++++ ++++
T Consensus 34 lg~~-------~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~-----~~~~~~~ 101 (477)
T TIGR01301 34 LGIP-------HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA-----ADIGHLF 101 (477)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-----chhhhhc
Confidence 6777 889999999999999999999999999 59999988774 66666676777776 4432
Q ss_pred --------------HHHHHHHHHHhhhccCchhhhhhhhcccccCcc--chhhHHHHHHHhhhHhHHHHHHHHHH--H-h
Q 009268 167 --------------FYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKR--GLIMGVWNAHTSVGNISGSLLAASVL--D-Y 227 (538)
Q Consensus 167 --------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ig~~l~~~l~--~-~ 227 (538)
.++++-.+..++.....++..++++|.+|+++| +.+.++.+...++|.++|+.++++.. + +
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 233333344557777888889999999998765 68999999999999999999998752 1 1
Q ss_pred -------------CchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcc
Q 009268 228 -------------GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSG 294 (538)
Q Consensus 228 -------------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (538)
+.|..|++.+++.++..++..+..+|.|........+ ++.++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~----~~~~~~~~~----------------- 240 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN----SEAAPPSKH----------------- 240 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh----hhccccccc-----------------
Confidence 5688999988888887777788888865322110000 000000000
Q ss_pred cccCCCCccccc-hhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcc------h----hhhhhhh
Q 009268 295 IRYGSGSRTSVG-LFQACLI-PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVK------T----AGNLSTL 362 (538)
Q Consensus 295 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~------~----~g~~~~~ 362 (538)
..++.... ++.+.+- |.++.+++..++.+++.+.+..|...|+.+.. |+-++. + ..+....
T Consensus 241 ----~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v---~~~~~~~~~~y~~gvr~G~~~l~~ 313 (477)
T TIGR01301 241 ----GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREV---YGGSVNQGAKYDDGVRAGAFGLML 313 (477)
T ss_pred ----chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH---cCCCCcchhHHHHHHHHHHHHHHH
Confidence 00001011 1222222 45788999999999999999999999887532 332221 1 1233445
Q ss_pred hhhhhhhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccC-c----------------h-HHHHHHHHHHHHHh
Q 009268 363 FDVGGIFGGIIAGYISDKLKA-RATTAATFMYAAIPSMLLYRTYGS-V----------------S-QTVNIVLMMVAGLF 423 (538)
Q Consensus 363 ~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~-~~~~~~~~~~~g~~ 423 (538)
+.+...+.+++..++.+|+|+ |+...++.++.++++....+.... . . .+..++...+.|+.
T Consensus 314 ~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~ 393 (477)
T TIGR01301 314 NSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIP 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHH
Confidence 556666777888899999985 566566656655555554432110 0 0 35667777889999
Q ss_pred hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---CchHHHHHHHHHHHHHHHHH
Q 009268 424 VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~ 500 (538)
.+..+...++++++..+.. .+..|..+|+.|.+..+...+.....|.+.+. +...++.+.++.+++++++.
T Consensus 394 ~A~~~siPfal~s~~~~~~------~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 394 LAITYSIPFALASIRSSNL------GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHHHHHHhHHHHHHHcccc------CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 9999999999999988842 15679999999999999999999988885554 45667777788888877777
Q ss_pred HHHhhh
Q 009268 501 SRLVIA 506 (538)
Q Consensus 501 ~~~~~~ 506 (538)
.+..++
T Consensus 468 ~~~~~~ 473 (477)
T TIGR01301 468 LILLPR 473 (477)
T ss_pred HHhCCC
Confidence 766543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=195.01 Aligned_cols=354 Identities=16% Similarity=0.140 Sum_probs=273.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHH-HHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLT-TGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.+..++..++..+..++..|+.|.++|+-|+||.++ +..++..+++.++.+. ...+++...+.-++.-++.+....
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~~~~~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---SPGQWWLALVLFIIANVGYEASNV 145 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999887554 4555556666666663 225566666666666678888889
Q ss_pred hhhhhhhcccccCcc--------------------------chhhHHHHHHHhhhHhHHHHHHHHHH-H--------hCc
Q 009268 185 SVVAVIGNWFGKRKR--------------------------GLIMGVWNAHTSVGNISGSLLAASVL-D--------YGW 229 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~ig~~l~~~l~-~--------~gw 229 (538)
...+++.|..+++++ ++..+.-.+...+|.++..++...+. . .+-
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~ 225 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI 225 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence 999999999999888 89999999989999988776655543 1 125
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhh
Q 009268 230 GWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQ 309 (538)
Q Consensus 230 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (538)
|..+.+.++.-++.++..++++|+.|+....+....... . .-++-...+++
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-----------------~------------g~~~l~~t~k~ 276 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-----------------F------------GFKRLWRTFKE 276 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-----------------H------------HHHHHHHHHHH
Confidence 888999999888888999999998876422110000000 0 01112334566
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH--HHH
Q 009268 310 ACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR--ATT 387 (538)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~ 387 (538)
+.|.|......+++++..-+...+......|..+. +|++..+...+.....+.+++|+++.|++.||+|.| +++
T Consensus 277 ~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~----lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 277 IRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEV----LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 67788888899999999999999999999999988 799999999999999999999999999999999998 666
Q ss_pred HHHHHHHHHHHHHHHh-----hccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH
Q 009268 388 AATFMYAAIPSMLLYR-----TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT 462 (538)
Q Consensus 388 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 462 (538)
.+...+..+..+.... .....+.+.++++.++.|++.+..++..-++..+.+|+ ++.+..+|++.+.
T Consensus 353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~--------g~e~efFgly~i~ 424 (477)
T PF11700_consen 353 LISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP--------GREAEFFGLYAIT 424 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--------chhhHHHHHHHHH
Confidence 6555544332222221 11234666778888899999999999999999999997 6779999999999
Q ss_pred hHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
....+.+||.+.|.+.+. +.+..+....++.+++.++....
T Consensus 425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 425 GKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998 58888888888887777666444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=188.18 Aligned_cols=395 Identities=16% Similarity=0.140 Sum_probs=288.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCc
Q 009268 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGT 106 (538)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 106 (538)
+.-++||.+++...+..+.+.+....++...-..... +| + .
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-------------------------------Yg-s-------~ 78 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-------------------------------YG-S-------S 78 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-------------------------------hc-c-------h
Confidence 4667899999999999999988888888776555433 45 4 5
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccc-hhHH--HHHHHHHHHHhhhccCc
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDI-HAFG--FYLIMQMVAGLFQATGW 183 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~-~~~~--~l~~~r~l~G~~~g~~~ 183 (538)
...-|+.-+|++.+....+++-|+.|++|-|..++++..+.+++..+-..+..+.. +.++ ....+..+.+.++-...
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 56679999999999999999999999999999999999999999999888743311 3445 78889999999988888
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-------hCchH--HHHHHHHHHHHHHHHHHhhhccC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-------YGWGW--SFILPGASIVMGGIIVYLFLAAY 254 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-------~gwr~--~f~~~~~~~~~~~~~~~~~~~~~ 254 (538)
.....+..-||+++||..+..+-..+..+|.++|-++...+.. ..|.. .|+..+++..+..++..+..++.
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8888999999999999999999999999999998888777652 24654 45555555544434455555554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHH
Q 009268 255 PEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFL 334 (538)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
|+......... . +...-..+.++.++++++....+++.+....+++..
T Consensus 239 P~tPps~s~~~---~-----------------------------~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~ 286 (480)
T KOG2563|consen 239 PPTPPSASQAA---L-----------------------------QDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLS 286 (480)
T ss_pred CCCCCchhHhh---h-----------------------------hcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHH
Confidence 44332210000 0 111234567889999999999999888888888888
Q ss_pred HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHh-hccCchHHH
Q 009268 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY-AAIPSMLLYR-TYGSVSQTV 412 (538)
Q Consensus 335 ~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 412 (538)
+.+-.-+... |++...+|.......+++++++.+.|.+.||.+..+........ ..+..+.+.. .......+.
T Consensus 287 ~~l~~~l~~s-----gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~vi 361 (480)
T KOG2563|consen 287 TLLNLALCPS-----GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVI 361 (480)
T ss_pred HHhhhccccc-----cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence 8777666666 77778999999999999999999999999999775554433333 2232122222 122234455
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C----chHHHH
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G----WDAVFI 487 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g----~~~~~~ 487 (538)
......++|++..+.+|...-...|...| ..-++..|+.++.+++-+.+-..+.+...+. + +...-+
T Consensus 362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyP--------v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i 433 (480)
T KOG2563|consen 362 VFTTCGLLGFFGTGYLPIGFELGVETTYP--------VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANI 433 (480)
T ss_pred hhhhHHHHHHhhcCCCCcceeeeeeeccc--------cCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchh
Confidence 56677788888888888777776666555 3346778999999999999999998888776 4 444445
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009268 488 MLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~ 505 (538)
.+....++..++..+++.
T Consensus 434 ~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 434 FLTVSALLGAILVAFFRP 451 (480)
T ss_pred HhHHHHHHHHHHHhhhhh
Confidence 555555555555555543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=188.06 Aligned_cols=362 Identities=15% Similarity=0.094 Sum_probs=248.1
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHH--HHHHHH-HhccccccchhHH-HHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGS--GIFVGL-FGMGYFLDIHAFG-FYLI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~--~i~~~~-~~~a~~~~~~~~~-~l~~ 170 (538)
.|++ .+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+.+. ..+.... ..|++ ..++
T Consensus 38 ~GLs-------~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll-~~n~~lg~ii 109 (412)
T PF01306_consen 38 AGLS-------GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL-QSNFWLGAII 109 (412)
T ss_dssp H----------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH-HTT-HHHHHH
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4788 999999999999999999999999999999777654433222 122222 1221000 02222 2223
Q ss_pred HHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
+-+..|+......|+..+++.++. ++.+.-.|-.....++|.+++..++|.+.+.+-+..||+..+.+++..++.++.
T Consensus 110 g~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 110 GGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp TTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHc
Confidence 333345555555566667666654 456777888899999999999999999988777889998776666654444444
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
.|+.++.....+.. + .+ +++...++..+++|+|++|.+.+........+
T Consensus 188 ~~~~~~~~~~~~~~-~-~~-----------------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y 236 (412)
T PF01306_consen 188 KPDVPPQAEVADAL-G-AK-----------------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIY 236 (412)
T ss_dssp ---SSSSS-SSTTS-S-S-----------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CCcCchhhhhhccc-c-cC-----------------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 44433322111000 0 00 11112334578899999999988888777777
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
..+....|.|....+. ..+.+....|.+.+...+..++...+.+++.+|+|.|+.+++...++.+=...... .++.
T Consensus 237 ~vfdqqf~~y~~~~f~-~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~---~~~~ 312 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQ-SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF---ATNP 312 (412)
T ss_dssp HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SH
T ss_pred HHHHHHHHHHHHHHhc-ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh---hcch
Confidence 7777777777765410 01455567888999999999999999999999999999999888887776555443 3566
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHH-HhHhHHHHHHhHHHHHHhhcc-CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAII-DGTGSVGAALGPLLTGFLSTQ-GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~ 488 (538)
+.....-.+-++-.........-++.+.+++ |..++...+. +....+|..+.+.+.|.++|. |++.+|++
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~--------rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli 384 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDK--------RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence 7777777777877777777888888888886 8888888885 677899999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 009268 489 LMVGALIAGLLLSRLVIAEIT 509 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~ 509 (538)
++.+.+...++..+..+++++
T Consensus 385 mg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 385 MGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHheeeecCCCc
Confidence 998888877777776654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=186.32 Aligned_cols=277 Identities=18% Similarity=0.147 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH----------------
Q 009268 163 HAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD---------------- 226 (538)
Q Consensus 163 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---------------- 226 (538)
.+|+.+++.-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..+||++++.+..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 7899999999999999999999999999999999999999999999999999999999987762
Q ss_pred -hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCcccc
Q 009268 227 -YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSV 305 (538)
Q Consensus 227 -~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (538)
.+||++|++.+.+.++..++ +.+.+ .|+.+..+ ++... .+ +..
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~-~~~~~-~p~~~~~~---~~~~~-----------------------------~~--~~~ 131 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAII-FAFLP-LPELQEAD---VARVS-----------------------------SG--DTT 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcc-CCCCCccc---ccccc-----------------------------cc--ccc
Confidence 36999999777765554433 22332 22211000 00000 00 000
Q ss_pred chhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH
Q 009268 306 GLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARA 385 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 385 (538)
..++.+++|.++...+..+++.....++..|++.|+.+.. .+|+++.+++...+.+..+.++|+++.+++.||+++|+
T Consensus 132 ~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~--~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPH--ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 1134577888888888888888889999999999997530 04899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH
Q 009268 386 TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465 (538)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 465 (538)
.+.++..+.++..+++... .+. ......++.|++.+..+|...+...+.+++ ..+++.++. .+..+
T Consensus 210 ~l~~~~~l~~~~~~l~~~~---~~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~---------~~~~asai~-~~~~~ 275 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALT---HGY-VAMWFVLALGLFNSIMFPTIFSLALNALGR---------HTSQGSGIL-CLAIV 275 (310)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hhhhhHHHH-HHHHh
Confidence 8777766665554333321 122 223455578899999999998888887763 345666664 57789
Q ss_pred HHHHhHHHHHHhhcc-CchHHHHHHHH
Q 009268 466 GAALGPLLTGFLSTQ-GWDAVFIMLMV 491 (538)
Q Consensus 466 g~~i~~~~~g~l~~~-g~~~~~~~~~~ 491 (538)
|+++.|.+.|.+.|. +.+.++++...
T Consensus 276 Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 276 GGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999997 88888764433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=199.83 Aligned_cols=384 Identities=13% Similarity=0.068 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHH
Q 009268 34 IILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEID 113 (538)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~ 113 (538)
..+.+++..++.............+.+.++ +|++ .++++...
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~-------------------------------lg~s-------~~~i~~~~ 67 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDD-------------------------------LGLD-------GARYQRLV 67 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHh-------------------------------cCCC-------HHHHHHHH
Confidence 344555556667766633334455555545 7888 99999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcC-----ChhhHHHHHHHHH-HHHHHHhccccccchh-HHHHHHHHHHHHhhhccCchhh
Q 009268 114 LAFLACYSVGMFVAGHLGDTLD-----LRLFLTTGMVGSG-IFVGLFGMGYFLDIHA-FGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 114 s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~-i~~~~~~~a~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....+.. ++ .....+.+++.+++.+...++.
T Consensus 68 sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~~~a~~dv~~ 141 (468)
T TIGR00788 68 GLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK-----VSSAKVAAAFIFLAALAKALYDVLV 141 (468)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999655 999999997 6777787777663 433333333 34 4444458889999999999999
Q ss_pred hhhhhcccccCccchhh---HHHHHHHhhhHhHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009268 187 VAVIGNWFGKRKRGLIM---GVWNAHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 262 (538)
.++..|..+ +++.... +......++|.++|+.++|.+.+ ++||..|++.+++.++. .+..++++|++.....+.
T Consensus 142 da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~ 219 (468)
T TIGR00788 142 DSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRI 219 (468)
T ss_pred HHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccc
Confidence 999999998 5554433 34444455899999999998884 69999999998887776 455566777531111100
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFA-KLVAYTFLYWLPFYL 341 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 341 (538)
.+++. ....... ..... ..++.....++.+++|.++...+..++. .........+. .+.
T Consensus 220 ~~~~~------~~~~~~~-----~~~~~--------~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~ 279 (468)
T TIGR00788 220 GTYLE------MNMALLT-----LGVLA--------NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CAT 279 (468)
T ss_pred cccch------hhhhhhh-----hhHHH--------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEE
Confidence 00000 0000000 00000 0011122345567778777655544442 11111111100 022
Q ss_pred hhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-------cCchHHHHH
Q 009268 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY-------GSVSQTVNI 414 (538)
Q Consensus 342 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 414 (538)
.+. .|+++...|.+....+++.+++..+.+++.+|++.|+.+.++..+..++.+...... ...+.+...
T Consensus 280 ~~~----lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~ 355 (468)
T TIGR00788 280 TQC----LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL 355 (468)
T ss_pred ccc----CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence 223 699999999999999999999999999999999999998888777766554422110 002222334
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C-----chHHHHH
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G-----WDAVFIM 488 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-----~~~~~~~ 488 (538)
...++.+++.+..+.+....+.+..|+ +..|+.+++.+.+.++|..+++.++|.+.+. | |+..+..
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~--------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPS--------GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCC--------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 445566666666777778888888886 8889999999999999999999999999887 5 6666655
Q ss_pred HHHHHHH
Q 009268 489 LMVGALI 495 (538)
Q Consensus 489 ~~~~~~~ 495 (538)
..+..+.
T Consensus 428 i~i~~~~ 434 (468)
T TIGR00788 428 ILGHSLA 434 (468)
T ss_pred HHHHHHH
Confidence 4444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=193.62 Aligned_cols=336 Identities=11% Similarity=0.018 Sum_probs=220.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhc----CChhhH-HHHHHHHHHHHHHHhccc--cccchhHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTL----DLRLFL-TTGMVGSGIFVGLFGMGY--FLDIHAFGF 167 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~a~--~~~~~~~~~ 167 (538)
+|++ ..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..+++.... .......+.
T Consensus 39 ~gl~-------~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 39 AGVG-------AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 6788 99999999999999999999999999996 777744 556555554444432110 000012334
Q ss_pred HHHHHHHHHhhhccCchhhhhhhhcccc-cCccchhhHHHHHHHh-----hhHhHHHHHHHHHH---HhCchHHHHHHHH
Q 009268 168 YLIMQMVAGLFQATGWPSVVAVIGNWFG-KRKRGLIMGVWNAHTS-----VGNISGSLLAASVL---DYGWGWSFILPGA 238 (538)
Q Consensus 168 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~ig~~l~~~l~---~~gwr~~f~~~~~ 238 (538)
+++..++.+++.+...++..++..+..+ +++|.+..++-..+.+ ++..++|.+++... ..+|.....+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v 191 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAI 191 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 4555567788888888877787776664 4678887776654433 44455565554321 0112111122233
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHH
Q 009268 239 SIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIP 318 (538)
Q Consensus 239 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (538)
+.++..++.+...||+++... ++......++.+++||.++.
T Consensus 192 ~~~~~~~~~~~~~~e~~~~~~---------------------------------------~~~~~~~~~~~l~~n~~f~~ 232 (448)
T PRK09848 192 AGMVLYFICFKSTRENVVRIV---------------------------------------AQPSLKISLQTLKRNRPLFM 232 (448)
T ss_pred HHHHHHHHHHcCcEeccCCCc---------------------------------------cCCCHHHHHHHHhCCchHHH
Confidence 333322233333344321100 00111223567899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009268 319 FAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPS 398 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 398 (538)
..+..++............|.|+++. +|.+....++......++.+++.++.+++.||+++|+.+.++..+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~ 308 (448)
T PRK09848 233 LCIGALCVLISTFAVSASSLFYVRYV----LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGY 308 (448)
T ss_pred HHHHHHHHHHHHHHHhhhheeeEeee----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 88888888888888888888888887 68777666555555567788899999999999999999888877766665
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
+++.. .+..+.+...+..++.|++.+...+...+...+..+.++. ....+..|...|+.++...+|..+++.+.|.+.
T Consensus 309 ~~~~~-~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~-~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 309 LLFFW-VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY-LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 2233455555556677888888887777777766654332 222366799999999999999999999999887
Q ss_pred cc-Cc
Q 009268 479 TQ-GW 482 (538)
Q Consensus 479 ~~-g~ 482 (538)
+. ||
T Consensus 387 ~~~G~ 391 (448)
T PRK09848 387 GLSGY 391 (448)
T ss_pred HHcCC
Confidence 65 54
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-21 Score=190.02 Aligned_cols=336 Identities=14% Similarity=0.101 Sum_probs=260.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhh----hcCChhh-HHHHHHHHHHHHHHHhcc-c--cccchhHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGD----TLDLRLF-LTTGMVGSGIFVGLFGMG-Y--FLDIHAFG 166 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~-l~~~~~~~~i~~~~~~~a-~--~~~~~~~~ 166 (538)
+|++ +..+|++..+..+..++..|+.|.++| |+||||. ++++.+..+++.+++... . ......+.
T Consensus 32 ~gl~-------~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 32 LGLS-------PALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred cCCC-------HHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 6788 999999999999999999999999999 8998775 556778888877777653 0 00001234
Q ss_pred HHHHHHHHHHhhhccCchhhhhhhhcccc-cCccchhhHHHHHHHhhhHhHHHHHHHHHH-H-------hCchHHHHHHH
Q 009268 167 FYLIMQMVAGLFQATGWPSVVAVIGNWFG-KRKRGLIMGVWNAHTSVGNISGSLLAASVL-D-------YGWGWSFILPG 237 (538)
Q Consensus 167 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~-------~gwr~~f~~~~ 237 (538)
.+.+.-++..++......+..++..|..+ +++|.+..+.-..+..+|..+...+.+.+. . .+|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 45777777789999999999999999997 478999999999999998876655555444 1 16999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchH
Q 009268 238 ASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVI 317 (538)
Q Consensus 238 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (538)
++.++..++..+..+|.++....+ + ++.+....++.+++||.++
T Consensus 185 iv~~v~~~i~~~~~ke~~~~~~~~-------~-----------------------------~~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSVEVTEQ-------E-----------------------------KKISLRDSLRSLFRNRPFR 228 (428)
T ss_pred HHHHHHhhhhhheeeecccccccc-------c-----------------------------cccccccchhhhcccchHH
Confidence 988888777777777721111100 0 1222344567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 397 (538)
.+.+..++............+.|.++. .|.+ ...+.+.....++.+++.++.++++||+|+|+....+..+.+++
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~v----l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYV----LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHH----hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 888888888888888888888888887 5655 56677777888999999999999999999999999888888887
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 398 SMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.+++.... ..+.+..++..++.|++.+..+....+..++.++.++.. ..++..|..+|+.++...++..+++.+.|.+
T Consensus 304 ~~~~~~~~-~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~-tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 304 FLLLFFLG-PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWK-TGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHH-hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHh-cCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77665532 257778888888999999998888888888777654333 3347789999999999999999999999988
Q ss_pred hcc
Q 009268 478 STQ 480 (538)
Q Consensus 478 ~~~ 480 (538)
.+.
T Consensus 382 l~~ 384 (428)
T PF13347_consen 382 LAL 384 (428)
T ss_pred HHH
Confidence 775
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=177.27 Aligned_cols=339 Identities=14% Similarity=0.060 Sum_probs=262.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh----cCChh-hHHHHHHHHHHHHHHHhccc-cccchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT----LDLRL-FLTTGMVGSGIFVGLFGMGY-FLDIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~a~-~~~~~~~~~l 168 (538)
+|++ +..+|.+..+--+--++.-|+.|.++|| +|||| .++.+.+..++.+.++-.+. +....+....
T Consensus 43 ~Gis-------~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 43 FGLS-------AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred cCCc-------HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 6888 8899999999999999999999999996 67766 56677788888888887761 0001346667
Q ss_pred HHHHHHHHhhhccCchhhhhhhhcccc-cCccchhhHHHHHHHhhhHhHHHHHHHHHH--------HhCchHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWFG-KRKRGLIMGVWNAHTSVGNISGSLLAASVL--------DYGWGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--------~~gwr~~f~~~~~~ 239 (538)
++.-++.+++......+-.++.++..+ ++||.+..+.-..+.++|..+...+...+. ..||+..-.+.+++
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 788889999999999999999999984 589999999999999999776554444443 14788888888888
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
+++..+.+++-.+|++.+....... .+++....+...++||.+...
T Consensus 196 ~~i~~l~~~~~v~ER~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 196 GVILLLFCFFNVKERVVETQPTKTG----------------------------------VKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHHHHHHHHhhcccCccccCccc----------------------------------ccccHHHHHHHHHccchHHHH
Confidence 8887777777777766532211000 111222234467899998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
++..++..............|.+.. .|.+.............+.+++.++..++.+|+|+|+....+.++.+++.+
T Consensus 242 l~~~l~~~~~~~i~~s~~~yy~~y~----lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~ 317 (467)
T COG2211 242 LLMNLLLFIAFNIRGSIMVYYVTYV----LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL 317 (467)
T ss_pred HHHHHHHHHHHHHHhhhhheeEEEE----cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 8877777777777777778787777 788888888888888888888899999999999999999999888888877
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
++++.. ..+.+..++..++.+++.+...+...+.+++.. ++.+..+.+|.-|...|.+.++.-+|.+++..+.|++.+
T Consensus 318 ~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v-Dyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 318 LLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTV-DYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchh-hHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777643 456677777778888888887777777776544 455566667889999999999999999999999999887
Q ss_pred c
Q 009268 480 Q 480 (538)
Q Consensus 480 ~ 480 (538)
.
T Consensus 396 ~ 396 (467)
T COG2211 396 A 396 (467)
T ss_pred H
Confidence 5
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-19 Score=176.23 Aligned_cols=373 Identities=13% Similarity=0.081 Sum_probs=225.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhc-CChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTL-DLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ ..+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++.. ..+...+.+...
T Consensus 40 lgls-------~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~~~~~~~l~l~ 108 (493)
T PRK15462 40 LKYD-------DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EIHPSFLYLSLA 108 (493)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHHH
Confidence 6777 88999999999999999999999999999 99999999999999998877653 012233444444
Q ss_pred HHHhhhccCchhhhhhhhcccccC--ccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKR--KRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
+.++|.|...+...++++|.+|++ +|..++++.+...++|..++|.+.+++. ++|||+.|.+.++. .+.+++.++.
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig-m~l~li~~~~ 187 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG-MIAGLVIFLC 187 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH-HHHHHHHHHH
Confidence 555667777788889999999875 6999999999999999999999999998 58999999987654 3444444443
Q ss_pred hccCCCCC-CCCCCCCCCCCCCCCCCcc----------------ccccccccccccc-----cCccc-ccCCCCccccch
Q 009268 251 LAAYPEDV-GFPYANDPIPSSERLPNDE----------------ESHMQKGKTAAVE-----NNSGI-RYGSGSRTSVGL 307 (538)
Q Consensus 251 ~~~~p~~~-~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~ 307 (538)
.++...+. ..+++. .++++..... ....+........ ..... .....+.
T Consensus 188 ~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 259 (493)
T PRK15462 188 GNRHFTHTRGVNKKV---LRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAE----- 259 (493)
T ss_pred hhhhhccCCCCCCCC---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 33221111 000000 0000000000 0000000000000 00000 0000000
Q ss_pred hhhhccC--chHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 009268 308 FQACLIP--GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEI-GGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR 384 (538)
Q Consensus 308 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 384 (538)
.+.=|+| .+..+.+...+.+..+....+.+..|..+.-. .-+|++ ..+.+..+...+..++.+++.+++-.|..+|
T Consensus 260 ~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~ 338 (493)
T PRK15462 260 NQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAG 338 (493)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC
Confidence 0000111 12222333333344444445555556554310 002332 2345667788888888888888887776332
Q ss_pred -------HHHHHHHHHHHHHHHHHHhh---cc---CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccch
Q 009268 385 -------ATTAATFMYAAIPSMLLYRT---YG---SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRA 451 (538)
Q Consensus 385 -------~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (538)
..+.++..+++++.+.+... .. ..+.++.+...++.+++--...|...+.+.+..|+ +.
T Consensus 339 ~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~--------~~ 410 (493)
T PRK15462 339 NRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP--------GV 410 (493)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH--------HH
Confidence 13556666666665555321 11 13566777777888888888889999999888875 89
Q ss_pred hHHHHHHHHhHh-HHHHHHhHHHHHHhhc------------c-CchHHHHHHHHHHHHH
Q 009268 452 LATVTAIIDGTG-SVGAALGPLLTGFLST------------Q-GWDAVFIMLMVGALIA 496 (538)
Q Consensus 452 ~g~~~g~~~~~~-~~g~~i~~~~~g~l~~------------~-g~~~~~~~~~~~~~~~ 496 (538)
+|..+|+..... .+|..++..+.+...+ . .|...|...+.+.+++
T Consensus 411 ~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 411 TGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 999999886533 5666666666655531 1 3556777777666655
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=177.58 Aligned_cols=335 Identities=14% Similarity=0.012 Sum_probs=219.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh----cCChhh-HHHHHHHHHHHHHHHhcccc-ccchhHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT----LDLRLF-LTTGMVGSGIFVGLFGMGYF-LDIHAFGFY 168 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~a~~-~~~~~~~~l 168 (538)
+|++ +..+|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.+++..... .....+..+
T Consensus 40 ~Gl~-------~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 40 FGIP-------AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 6888 9999999999999999999999999996 688764 55676777777766554310 000114456
Q ss_pred HHHHHHHHhhhccCchhhhhhhhcccc-cCccchhhHHHHHHHhhhHhHHHHHHHHHH-H-------hCchHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWFG-KRKRGLIMGVWNAHTSVGNISGSLLAASVL-D-------YGWGWSFILPGAS 239 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~-------~gwr~~f~~~~~~ 239 (538)
++.-++..++.........++.+|..+ ++||++..++...+..+|..+++.+...+. . .+|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 666667788888888888899999886 689999999999999999888876654443 2 2577777777776
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++...+.+...+|.++... ++.+....++..++||.++.+
T Consensus 193 ~~i~~~i~~~~~kE~~~~~~---------------------------------------~~~~~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 193 AFMMLAFCFFTTKERVEAPP---------------------------------------TTTSMREDLRDIWQNDQWRIV 233 (460)
T ss_pred HHHHHHHHHhcceeccCCCc---------------------------------------cCCCHHHHHHHHhCChHHHHH
Confidence 66654444444444322110 000112234667788887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
....++..............|.+.. .|. +...+.+.....++++++.+++++++||+++|+..........+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~~~y~----~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 234 GLLTIFNILAVCVRGGAMMYYVTWI----LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh----cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 6655555555444444444444444 343 33345566677888899999999999999998886654444333333
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
++.. .+..+.+...+..++.|++.+...+.....+.+ ..++.+....++..|..++..++...+|.++++.+.|.+.+
T Consensus 309 ~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad-~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 309 AMFF-VPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD-TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 222333333444555676665544444454444 44443344445667887888889999999999999998887
Q ss_pred c-Cc
Q 009268 480 Q-GW 482 (538)
Q Consensus 480 ~-g~ 482 (538)
. ||
T Consensus 387 ~~Gy 390 (460)
T PRK11462 387 YGGY 390 (460)
T ss_pred HcCC
Confidence 6 55
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=163.75 Aligned_cols=348 Identities=15% Similarity=0.049 Sum_probs=266.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHH-HHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLT-TGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.+..|...++..+..++..|+.|.++|+.|+||..+ ....+..+++++..++ ++...++..++...+..++.....+
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i--~~~s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI--PPGSYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHHhcchhhe
Confidence 667888999999999999999999999999877544 4555555666666665 1112455566667778888889999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHH--HHHH-----------------hCchHHHHHHHHHHHHHHH
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAA--SVLD-----------------YGWGWSFILPGASIVMGGI 245 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~--~l~~-----------------~gwr~~f~~~~~~~~~~~~ 245 (538)
...+++.+..++++-++..++-.....+|+.+.-+... .+.. ..=|.++.+.++-.++..+
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 99999999999999999988888888888877644431 1111 1357888888888888888
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHH
Q 009268 246 IVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFF 325 (538)
Q Consensus 246 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
.+++..++.++.....+ +... +.-++-..+++++++++.+....++.++
T Consensus 215 Pm~~~v~~~~~~~~~~~-----------------------~~l~--------~g~k~L~~t~k~i~~~~~i~~FLiA~~~ 263 (438)
T COG2270 215 PMILNVHDAEKISSPPP-----------------------TALR--------NGFKELKSTFKEIRGRKNLVLFLIARFF 263 (438)
T ss_pred HHHhcccccccccccch-----------------------HHHH--------HHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888877664320000 0000 0112233456778888888888899999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
..-+..+.......|.... +|++..+..++.....+.+++|.++.|++.||+|.|+++..+.++..+.++.....
T Consensus 264 ~~DGv~til~~~~~fg~~~----~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~- 338 (438)
T COG2270 264 YIDGVNTILAMGGVFGAAD----LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL- 338 (438)
T ss_pred HHhhHHHHHHHHHHHHHHH----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-
Confidence 8888888999999999977 79999999999999999999999999999999999988888887777666665543
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--Cch
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWD 483 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~ 483 (538)
......+++.++.|.+.++.++..-++..+.+|+ +..++.+|+++..+...+.+||.+.+.+.+. +-+
T Consensus 339 --~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~--------~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r 408 (438)
T COG2270 339 --EGELDFWILGLLVGTSLGGAQASSRSYLARLVPK--------GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR 408 (438)
T ss_pred --cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--------ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh
Confidence 2234445566788999999999999999999997 7778999999999999999999999999887 566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~ 501 (538)
..+....++.+++.++..
T Consensus 409 ~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 409 AGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hHHHHHHHHHHhhHhhEE
Confidence 666666666666554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-17 Score=154.69 Aligned_cols=353 Identities=16% Similarity=0.098 Sum_probs=254.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcC-----Chhh-HHHHHHHHHHHHHHHhccccccch-----
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLD-----LRLF-LTTGMVGSGIFVGLFGMGYFLDIH----- 163 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~-l~~~~~~~~i~~~~~~~a~~~~~~----- 163 (538)
++++ ....+.+.++..+... ..+.+|+.+|+.+ ||.. +..+.++...+..+.+++.+.-..
T Consensus 10 L~vp-------A~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~ 81 (403)
T PF03209_consen 10 LGVP-------AWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQS 81 (403)
T ss_pred hccH-------HHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 7777 8888888888886655 5899999999998 7765 445666666666666554221112
Q ss_pred --h--HH--HHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchH---HH
Q 009268 164 --A--FG--FYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGW---SF 233 (538)
Q Consensus 164 --~--~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~---~f 233 (538)
+ .+ ...+...+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+. +++-.- .+
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 2 22 34445567899999999999999999999999999999999999999999998888776 454222 22
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhcc
Q 009268 234 ILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLI 313 (538)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (538)
...+++.++..++. .+-.|++........ ++ ++......+++++.+
T Consensus 162 ~~~a~i~~~l~~ia-~wg~E~r~~~~~~~~----~~-----------------------------~~~~f~~a~~~~~~~ 207 (403)
T PF03209_consen 162 QGVALIALLLNLIA-LWGQEPRRSRRAAAA----ER-----------------------------PRPPFREAWRQVWAS 207 (403)
T ss_pred HHHHHHHHHHHHHH-HHhcccCCcccccCC----CC-----------------------------CCccHHHHHHHHHhC
Confidence 22233333322222 222233222111000 00 122234556788889
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH-HHhHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD-KLKARATTAATFM 392 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-r~~~~~~~~~~~~ 392 (538)
|+...+.+..++..+.++.-...+=+|--+. +|+++.+...+....+.+.++|..+.|++.. |.++++....++.
T Consensus 208 ~~a~~f~~fl~l~t~a~~~QD~iLEPygg~V----fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~ 283 (403)
T PF03209_consen 208 PQARRFFVFLFLGTLAFFMQDVILEPYGGEV----FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL 283 (403)
T ss_pred CChhHHHHHHHHHHHHHHhhHHHcCCchhHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 9998888888888888888888888888888 7999999999999999999999999998876 5677777777777
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 393 YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
.+.+++.++.......+.+.+....+++|++.+.......+.+.+...+ +..|..+|.....+.+...++..
T Consensus 284 ~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~--------~~aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 284 LGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA--------GRAGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--------cchhHHHHHHHHHHHHHHHHHHH
Confidence 7777766665544455677778888899999888777777777666654 77899999999999999999999
Q ss_pred HHHHhhcc-----------CchHHHHHHHHHHHHHHHHHH
Q 009268 473 LTGFLSTQ-----------GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 473 ~~g~l~~~-----------g~~~~~~~~~~~~~~~~~~~~ 501 (538)
++|.+.|. +|..+|.+-++..+++..+..
T Consensus 356 ~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 356 LGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999884 355666666655555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=162.00 Aligned_cols=354 Identities=15% Similarity=0.102 Sum_probs=226.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCC-hhhHHHHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDL-RLFLTTGMVGSGIFVGLF-GMGYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
.+..|++.++..++.+++++..|.+..|.+. |+.++.+.++..+++++. ++.. .+...-+.++++|++.|+|.|..
T Consensus 70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~-~~~~~~y~mL~~R~l~Gvg~~n~- 147 (488)
T KOG2325|consen 70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAY-VPNGVKYLMLVARILTGVGVGNF- 147 (488)
T ss_pred cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHcCcCcccH-
Confidence 7889999999999999999999999999997 889999999999999998 4432 22237899999999999997654
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh---C-----------chHHHHHHHHHHHHHHHHHHh
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY---G-----------WGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~---g-----------wr~~f~~~~~~~~~~~~~~~~ 249 (538)
....+++++....++|.++++....+..+|.++||.+...+.-. | +..+-|+.+++.++..+...+
T Consensus 148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 67789999988888999999999999999999999888776521 2 235667778888887778888
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHH
Q 009268 250 FLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLV 329 (538)
Q Consensus 250 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
+++|.++....+..+.+ + +.+.+. + +.+..+ +..+..+.+.+..+...+.
T Consensus 228 ~f~E~~~~~~~~~~~~~--~------~~~~~~--~--------------~~~~~~------~d~~~~~vc~~~~~~~~~~ 277 (488)
T KOG2325|consen 228 FFKEVYRGIIDKKKRSV--E------EEKSDI--E--------------KVKKPK------LDWVAVLVCIFLRFVVNFI 277 (488)
T ss_pred heeecccCccccccccc--h------hhccch--h--------------hhccCC------hhHHHHHHHHHHHHHHHHH
Confidence 88887665432211111 0 000000 0 000000 0011123344445555566
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhh----hhhhhhhhhhHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHH-
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNL----STLFDVGGIFGGIIAGYISDKL---KARATTAATFMYAAIPSMLL- 401 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~----~~~~~~~~~~~~~~~g~l~dr~---~~~~~~~~~~~~~~~~~~~~- 401 (538)
+....+..+.+.... ++++..++-.. .++.++..+.-. .....-|+ .+|+.+..++........+.
T Consensus 278 ~~~iet~~~~~~m~~----y~w~~~~av~~~gi~~~~~g~ls~~~~--l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~ 351 (488)
T KOG2325|consen 278 ATTIETLSSALTMVM----YGWTGSEAVLYNGITLSISGILSVILL--LLYIFTRLGKIDKRRIILLGFLIFFLSYYIFT 351 (488)
T ss_pred HHHHHhccchHHHHH----hccccchHHHhhhhHHHHHHHHHHHHH--HHHHHHHhhhhccceeeeehHHHHHHhhheee
Confidence 666566666666666 57766554433 333333332222 22223333 33444444433333222222
Q ss_pred HhhccCc---------------------------hHHH-HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhH
Q 009268 402 YRTYGSV---------------------------SQTV-NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALA 453 (538)
Q Consensus 402 ~~~~~~~---------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 453 (538)
+...... +.+. .+...+++|.+.-.......+..++.+.| +.++
T Consensus 352 yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp--------~~q~ 423 (488)
T KOG2325|consen 352 YPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP--------RDQG 423 (488)
T ss_pred eeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC--------cccc
Confidence 1100000 0001 11123344555444555677888888887 7889
Q ss_pred HHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 454 TVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 454 ~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
++.|++.....++..++|.+...+... |++..+.+..+..++...+...+.+
T Consensus 424 ~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 424 TMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred ceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887 8888877766666665555554444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-16 Score=149.71 Aligned_cols=387 Identities=16% Similarity=0.102 Sum_probs=238.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhc-CChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTL-DLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ .++..-+.+.|.--.-+..+++|+++||+ |+|+.++++.++..++.++.+.+. ..+...++++-+
T Consensus 56 Lg~~-------~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~ 125 (498)
T COG3104 56 LGFD-------ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLA 125 (498)
T ss_pred CCcC-------hHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHH
Confidence 6677 66666667777666667889999999995 999999999999999999999860 026788999999
Q ss_pred HHHhhhccCchhhhhhhhcccccC--ccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKR--KRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
+.++|.|..-+...++++|.+|++ +|-..+++++.+.++|+.++|++.+++. ++||+..|-+.++-..+ +++.+..
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~-gl~~f~~ 204 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMII-GLVIFLL 204 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999874 4788899999999999999999999998 68999999997765544 4666655
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCcccc------cc--ccc-cccc-----c----ccCcccccCCCCccccchhhhhc
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEES------HM--QKG-KTAA-----V----ENNSGIRYGSGSRTSVGLFQACL 312 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~-~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~ 312 (538)
.+..-......++................ .. ... .+.. . ........ ..+.++.. .+.-|
T Consensus 205 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~-~er~r 282 (498)
T COG3104 205 GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAE-AFRSPKVF-DERRR 282 (498)
T ss_pred ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCccH-HHHHH
Confidence 55432222221111111110000000000 00 000 0000 0 00000000 00000000 00000
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH-------
Q 009268 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGG-EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR------- 384 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~------- 384 (538)
-.....+.+.....+..+....+.+..|..+.-.++ +|++ ....+..+...+.-++.+++..++..+.+++
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~ 361 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTP 361 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcc
Confidence 011122223333333333334444555554432122 2322 2345677778888888888888888886543
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------ccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHH
Q 009268 385 ATTAATFMYAAIPSMLLYRT-------YGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTA 457 (538)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 457 (538)
..+.++..++..+.+++... ....+.++++...++.+++--...|...+.+.+..|+ ...+.+++
T Consensus 362 ~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--------~~~s~~ma 433 (498)
T COG3104 362 IKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--------ALKSFIMA 433 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--------HHHHHHHH
Confidence 23445555555555444332 2235677888888888888888889999999888886 77777788
Q ss_pred HHHhHhHHHHHHhHHHHHH------hhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 458 IIDGTGSVGAALGPLLTGF------LSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 458 ~~~~~~~~g~~i~~~~~g~------l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+.......+..++..+.+. ..+. .....|+.++...++..+.....
T Consensus 434 ~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 7777777777777666663 1222 56667777777766655554443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=160.21 Aligned_cols=263 Identities=17% Similarity=0.215 Sum_probs=200.5
Q ss_pred cCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccc-------------
Q 009268 94 AKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFL------------- 160 (538)
Q Consensus 94 ~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~------------- 160 (538)
.|+++ .++.|++.+.+-++..+...+..++.-|.-|-+.+-+++++.+++++++++-.+.
T Consensus 126 RF~i~-------Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~ 198 (735)
T KOG3626|consen 126 RFKIS-------SSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ 198 (735)
T ss_pred hcCCC-------CCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence 38898 8999999999999999999999999999999999999999999999999874100
Q ss_pred ----c---------------------------chh--HH-HHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHH
Q 009268 161 ----D---------------------------IHA--FG-FYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVW 206 (538)
Q Consensus 161 ----~---------------------------~~~--~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 206 (538)
+ ..+ ++ .++++.++.|+|....++...+++=|...+++-+..+|+.
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~ 278 (735)
T KOG3626|consen 199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL 278 (735)
T ss_pred cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence 0 011 33 6778899999999999999999999999999999999999
Q ss_pred HHHHhhhHhHHHHHHHHHHH----h----------------CchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC-CC
Q 009268 207 NAHTSVGNISGSLLAASVLD----Y----------------GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYA-ND 265 (538)
Q Consensus 207 ~~~~~~g~~ig~~l~~~l~~----~----------------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~ 265 (538)
.....+|.++|-++++++.+ + .|..-|++.+.+.++.++.++++-++.|+..+.... +.
T Consensus 279 ~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~ 358 (735)
T KOG3626|consen 279 YSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDL 358 (735)
T ss_pred HHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhh
Confidence 99999999999999998873 1 277788888888888766655543343443321100 00
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (538)
+..+.+.. .. +..... .++.+..+...+++++||.+...++...+....+.++.+++|-|++++
T Consensus 359 ~~~k~~~~------~~-~~~~~~--------~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Q- 422 (735)
T KOG3626|consen 359 HVLKTESG------GA-KSDKTF--------GKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQ- 422 (735)
T ss_pred cccccccc------cc-cCCcch--------hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHH-
Confidence 00000000 00 000000 001233456678899999999999999999999999999999999999
Q ss_pred cCCcCCCcchhhhhhhhhhh-hhhhHHHHHHHHHHHHh
Q 009268 346 IGGEYLSVKTAGNLSTLFDV-GGIFGGIIAGYISDKLK 382 (538)
Q Consensus 346 ~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~ 382 (538)
||.++..+..+.....+ +..+|.+++|++.+|+.
T Consensus 423 ---fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 423 ---FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred ---cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 89999999998866555 45567789999999874
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-20 Score=184.15 Aligned_cols=359 Identities=18% Similarity=0.222 Sum_probs=3.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccccc-------------
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLD------------- 161 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~------------- 161 (538)
|+++ .++.|++.+.+-++..+..++..++.+|..|-|.+-++.++.+++++++++-++..
T Consensus 33 F~l~-------S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 33 FGLS-------SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 8999 99999999999999999999999999998888899999999999999987631110
Q ss_pred --------------------------------chhHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHH
Q 009268 162 --------------------------------IHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAH 209 (538)
Q Consensus 162 --------------------------------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 209 (538)
..-++.+++++++.|+|....++...+++=|..++++-+..+|+..+.
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 001467888999999999999999999999999999999999999999
Q ss_pred HhhhHhHHHHHHHHHHHh-----------------------CchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCC
Q 009268 210 TSVGNISGSLLAASVLDY-----------------------GWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDP 266 (538)
Q Consensus 210 ~~~g~~ig~~l~~~l~~~-----------------------gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 266 (538)
..+|.++|-++++...++ .|..-|++.+++.++.++.++.+-++-|+..+.+...+.
T Consensus 186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~ 265 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKES 265 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhh
Confidence 999999999998876521 277777888888777766655553343444111111110
Q ss_pred CCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009268 267 IPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEI 346 (538)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (538)
..++.++...++...++..+. ..+..+.-....+.+++||.+....++.........++.+++|-|++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~Q-- 335 (539)
T PF03137_consen 266 SERKEEDSDKDSFKDPKSKKS--------FGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQ-- 335 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcchhhhhhhcccccccccc--------hhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000000000000000000000 0002334556678899999999999999999999999999999999999
Q ss_pred CCcCCCcchhhhhhhhhhh-hhhhHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHH---HHh-hc----------cC--
Q 009268 347 GGEYLSVKTAGNLSTLFDV-GGIFGGIIAGYISDKLKA--RATTAATFMYAAIPSML---LYR-TY----------GS-- 407 (538)
Q Consensus 347 ~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~--~~~~~~~~~~~~~~~~~---~~~-~~----------~~-- 407 (538)
++.++.++.++.....+ ++++|.+++|++.+|++. |+.+....+...+..++ .++ .. +.
T Consensus 336 --F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~ 413 (539)
T PF03137_consen 336 --FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHN 413 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcccc
Confidence 79999999988766555 677888999999999843 33322222222221111 100 00 00
Q ss_pred -----------------------------------chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchh
Q 009268 408 -----------------------------------VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRAL 452 (538)
Q Consensus 408 -----------------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (538)
.......+.+++..+..+....+......+.+++ ++|
T Consensus 414 ~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~--------~~r 485 (539)
T PF03137_consen 414 STSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP--------EQR 485 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh--------hhc
Confidence 0011222222333333444455555555566765 888
Q ss_pred HHHHHHHHhHh-HHHHHHhHHHHHHhhcc
Q 009268 453 ATVTAIIDGTG-SVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 453 g~~~g~~~~~~-~~g~~i~~~~~g~l~~~ 480 (538)
+.+.|+...+. -+|.+-+|.+.|.+.|.
T Consensus 486 s~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 486 SFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------
T ss_pred chhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 99999998765 45889999999999987
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-15 Score=145.01 Aligned_cols=318 Identities=15% Similarity=0.143 Sum_probs=223.3
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh--hhccCchhhhhhhhc
Q 009268 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGL--FQATGWPSVVAVIGN 192 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~i~~ 192 (538)
...+...+..+..|.++||+|||..+....+...+..+...+ +.+|.++ +.|+ +.+.......++++|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~------~~~~~~~----~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF------QGYWFFL----LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH------HHHHHhh----hcccccchhhhhhhhhhheee
Confidence 346677888999999999999999999999999888888888 4555544 4443 234566788899999
Q ss_pred ccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCC
Q 009268 193 WFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSE 271 (538)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 271 (538)
....++|....|+.......+..++|.+++.+. ..|.-.+|++..+..++..+..++++||+-.+..... . +..+
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~-~~~~-- 215 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-A-TLRE-- 215 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-c-cccc--
Confidence 999999999999999999999999999999988 5688889999988888877778888888754432211 0 0000
Q ss_pred CCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHH-HHHHHhhhcccCCcC
Q 009268 272 RLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLY-WLPFYLSQTEIGGEY 350 (538)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~g 350 (538)
.... ..... ..........+.-.+|..+.+++..+........-.. .++.|+... +|
T Consensus 216 ~~~~---~~~~~---------------~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~----f~ 273 (463)
T KOG2816|consen 216 LTPG---SLDSS---------------HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK----FG 273 (463)
T ss_pred cCCC---cccch---------------hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee----cC
Confidence 0000 00000 0001111112222345555555555554444433222 457777777 79
Q ss_pred CCcchhhhhhhhhhhhhhhHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchh
Q 009268 351 LSVKTAGNLSTLFDVGGIFGGIIAG-YISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429 (538)
Q Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (538)
++..+.+.+.+.......+++++.. .+...++.++....+...-.+......+. ...|..+. ..+.........+
T Consensus 274 w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---~~~w~~~~-~~v~~~~~~~~~p 349 (463)
T KOG2816|consen 274 WNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---TETWMMFA-AGVVVALAGIVFP 349 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---ccchhhhH-HHHHHHhhcchhH
Confidence 9999999888888888888888766 67777888887666666666665555553 23333333 3333444556778
Q ss_pred hHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
...+.......+ +.+|+++++...+..+.+.++|.+.+.+...
T Consensus 350 a~~s~~s~~v~~--------~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 350 AIRAFASILVSP--------EEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHhHHHhhccc--------ccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888888886 8889999999999999999999999888654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-15 Score=124.12 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhh
Q 009268 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG 191 (538)
Q Consensus 112 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 191 (538)
+.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+. ++++.+.+.+++.|++.+...+...+++.
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456778889999999999999999999999999999999888887 88999999999999999999999999999
Q ss_pred cccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 192 NWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 192 ~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
|.+|+++|++.+++......+|..+++.+++.+. ..+|++.|++.+++.++..+..++..||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999887 4689999999888777765555555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=134.77 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=138.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
|.++.+.+..++.....+....++|.|+++. +|++..+.|++.+...++.++++++.|+++||+|+|+.+..+...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~ 82 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ----YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA 82 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 3467777888888888889999999999887 699999999999999999999999999999999999988877776
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 394 AAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
..++.+++.. .++.+..++...+.|.+.+...+....+..+..++ +.|+++.|+.+...++|.+++|.+
T Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 83 FASGFIAIPL---VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSS--------TSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544433 23444444444555655555566677777777765 789999999999999999999999
Q ss_pred HHHhhccCchHHHHHHHHHHHHHHHHHHHH
Q 009268 474 TGFLSTQGWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 474 ~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
.+.+.+.+|+..|++.+++.+++.++..+.
T Consensus 152 ~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~ 181 (395)
T PRK10054 152 GTLLVMQSINLPFWLAAICSAFPLVFIQIW 181 (395)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999886689999998877777665544443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-13 Score=122.29 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=158.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ ..|++.+....+...++..++.|.++||+|||+.-++.+++++++++..-. ++++.+++.|++
T Consensus 64 yg~~-------~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~~L~~GRvl 130 (354)
T PF05631_consen 64 YGFS-------EHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYPVLLLGRVL 130 (354)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence 6777 889999999999999999999999999999999999999999999976655 899999999999
Q ss_pred HHhhhccCchhhhhhh-hcccccCcc----chhhHHHH-HHHhhhHhHHHHHHHHHHH-h--CchHHHHHHHHHHHHHHH
Q 009268 175 AGLFQATGWPSVVAVI-GNWFGKRKR----GLIMGVWN-AHTSVGNISGSLLAASVLD-Y--GWGWSFILPGASIVMGGI 245 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i-~~~~~~~~r----~~~~~~~~-~~~~~g~~ig~~l~~~l~~-~--gwr~~f~~~~~~~~~~~~ 245 (538)
-|++....+.+-.+.. .|+-..+.+ +.-++... ...++-.+.+.+++.++.+ . |-..+|....++.++.++
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999988888774 554222111 22122111 1122223333445555442 2 447888887777777666
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHH
Q 009268 246 IVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFF 325 (538)
Q Consensus 246 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (538)
++....+|+..+.... .+ ..+.....++.++++|+++.+.++..+
T Consensus 211 ~I~~~W~ENyg~~~~~------~~-----------------------------~~~~~~~a~~~i~~d~ril~LG~~qsl 255 (354)
T PF05631_consen 211 LILKTWPENYGDTSSS------SS-----------------------------LSGSFREAWRAILSDPRILLLGLIQSL 255 (354)
T ss_pred HHHhcccccCCCcccc------cc-----------------------------hHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 6665566654332110 00 011122334667788999999888887
Q ss_pred HHHHHHHHH-HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH
Q 009268 326 AKLVAYTFL-YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK 380 (538)
Q Consensus 326 ~~~~~~~~~-~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr 380 (538)
.-...|.+. .|.|..-.+ + ...--|++++.+.++.++|+.+..++..+
T Consensus 256 FE~smy~FVflWtPaL~~~------~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 256 FEGSMYLFVFLWTPALDPD------D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHheeeeeceecCC------C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777776654 455655422 2 22347899999999999999998776654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=137.04 Aligned_cols=345 Identities=15% Similarity=0.130 Sum_probs=213.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcC-----ChhhHHHHHHHHHHHHHHHhccccccchhHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLD-----LRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYL 169 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~ 169 (538)
+|++ +++.....+...+...+ .++.|.++|.+- ||+-++++.++.+++.+..+.... ...+.....
T Consensus 20 l~ls-------~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-~~~s~~~~~ 90 (433)
T PF03092_consen 20 LGLS-------PAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-SESSAAIAV 90 (433)
T ss_pred cCCC-------HHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-ccchhhhHH
Confidence 7888 99999999988888876 688999999872 555677787777666665555311 013566777
Q ss_pred HHHHHHHhhhccCchhhhhhhhccccc--CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHH
Q 009268 170 IMQMVAGLFQATGWPSVVAVIGNWFGK--RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGII 246 (538)
Q Consensus 170 ~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~ 246 (538)
++-++..+|......++.+++.|...+ ++||...+.......+|.+++..++|.+. ..++|..|.+.+++..+..+.
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 777888899999999999999998733 34778888888899999999999988887 578999999988887776555
Q ss_pred HHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHH-HHHH
Q 009268 247 VYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAF-CLFF 325 (538)
Q Consensus 247 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 325 (538)
.++..+|.++....+ .....+++.. .... ..++.....++.++.|.+|...+ ..++
T Consensus 171 ~~~~~~e~~~~~~~~--~~~~~~~~~~-------------~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 227 (433)
T PF03092_consen 171 ALFLLEERKVRPADE--VFSFGKEEVP-------------CLFG--------SFREQLSELWRALQQRAIWQPILFFIFF 227 (433)
T ss_pred HHHhhhhccccccch--hhcccccccc-------------hhhH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666555521111100 0000000000 0000 01123334566677777666555 2222
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
.......-.. ...|......++-++++...+.+..+..++.++|..+..+...+..-|+++....++..+..+.-....
T Consensus 228 ~~~~~~~~~a-~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 228 FNLPPSISSA-SSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred HHhccCCCCc-cEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE
Confidence 2111111000 011111111001237888888888777788888887777766666667776665555444333211111
Q ss_pred c-------CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 406 G-------SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 406 ~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
. .++.+..+.-.++..+.....+-+.....++..|+ ..-|+.+++...+.++|..++..++..+.
T Consensus 307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--------G~Egt~yall~s~~Nlg~~~s~~lg~~l~ 378 (433)
T PF03092_consen 307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPK--------GSEGTVYALLASFSNLGSSVSSTLGAFLM 378 (433)
T ss_pred EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01112122223333444444455666777788776 67799999999999999999999988887
Q ss_pred cc
Q 009268 479 TQ 480 (538)
Q Consensus 479 ~~ 480 (538)
+.
T Consensus 379 ~~ 380 (433)
T PF03092_consen 379 EL 380 (433)
T ss_pred HH
Confidence 65
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=117.47 Aligned_cols=345 Identities=15% Similarity=0.079 Sum_probs=221.8
Q ss_pred ccchh-hHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 106 TSKLG-EIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 106 ~~~~g-~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+.-+. ++.+.+-+..+..|++.+. ..
T Consensus 39 ~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-----~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 39 EEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-----TSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----CcHHHHHHHHHHHHHHHHH-HH
Confidence 44443 45556666777888999999999999999999999999999998898 9999999999999999866 57
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYG---WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP 261 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~g---wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 261 (538)
+.++++-...|+++-.++.+...+..-+|..++.++|-.+.+++ ++...++... +...+++..+++|..++..-.+
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~-~~~~a~~~~~fLP~~~~S~~f~ 191 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA-SVSLALLIALFLPMPKRSLFFH 191 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHcCCCCccccee
Confidence 77888888889999999999999999999999999998887643 4455455433 3333466667788765543322
Q ss_pred CCCCCCCC---CC-CCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Q 009268 262 YANDPIPS---SE-RLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWL 337 (538)
Q Consensus 262 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.+..+... .+ +..++..+...+..++. +.........-+.....+++..++|.++...+-+.+...+++.+.++.
T Consensus 192 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYv 270 (412)
T PF01770_consen 192 RKPPAEQDANESESDKMNESPESSSSTEKSP-STESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYV 270 (412)
T ss_pred ccCccccccccccccccccccccccccccCc-ccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 21111110 00 00000000000000000 000000000001123445666778988888888888888888888887
Q ss_pred HHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q 009268 338 PFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLM 417 (538)
Q Consensus 338 ~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (538)
.....+. .+.+-.....|.+-+...+.+.++.+..|++..++.+...+.++......+.+++. .....+.|...+..
T Consensus 271 Q~LW~~v--~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l-m~~t~~Iwv~Y~~y 347 (412)
T PF01770_consen 271 QSLWDTV--PPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL-MSFTGNIWVCYAGY 347 (412)
T ss_pred HHHHHhc--CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence 7776665 11234455678888888888888999999986666554444333332222222222 12246778878888
Q ss_pred HHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHH
Q 009268 418 MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAAL 469 (538)
Q Consensus 418 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 469 (538)
++++.......+....-++..+.. +..|.++|+.+++..+-..+
T Consensus 348 Iif~~~y~fliTiA~~qIA~~l~~--------e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 348 IIFRSLYMFLITIASFQIAKNLSE--------ERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--------cceeeeeeeHHHHHHHHHHh
Confidence 777776666666666666666653 67788888777665544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=135.77 Aligned_cols=149 Identities=10% Similarity=0.149 Sum_probs=127.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
.+..+.+.++..++..++.++.|+++||+|+|+++..+.++.+++..+..... ....+++.+++.+++.|++.+...+.
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-PEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999888876666530 00123567788899999999988889
Q ss_pred hhhhhhcccccCccchhhHHHH-HHHhhhHhHHHHHHHHHHH-------hCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASVLD-------YGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
...++.|++|+++|++++|+.+ ...++|.++||+++|++.+ +||+..|++.+++.++.+++.+++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 6788999999999998873 46999999999988888888888888663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=131.37 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=138.3
Q ss_pred hhhhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH-HhHHH
Q 009268 308 FQACLIPG-VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK-LKARA 385 (538)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~ 385 (538)
.+.+++|+ ++..++..++..+.++.+..+++.|+++. +|++..+++.+............+++|+++|| +|||+
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~ 89 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ----LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR 89 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 45567775 77777788888899999999999999887 79999888887777665555556789999999 59999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH
Q 009268 386 TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465 (538)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 465 (538)
.+..+..+.+++..++... ....+...+...+.|++.+...+.....+.+.+++.+ +.++.+.++.++..++
T Consensus 90 ~~~~g~~~~~ig~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~------~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWS--GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD------PRLDGAFTMYYMSINI 161 (500)
T ss_pred HHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc------hhhhhcchHHHHHHHH
Confidence 9998888777765555432 1233344455566778777777777788888876522 3445678888999999
Q ss_pred HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 466 GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 466 g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
|..++|.+.|++.+. ||+..|.+.++..+++.+...
T Consensus 162 G~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~ 198 (500)
T PRK09584 162 GSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFA 198 (500)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 999999987766555554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-13 Score=132.37 Aligned_cols=170 Identities=22% Similarity=0.258 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+...+..++.++....+..++|.+.++. |++..+.+++.+...++..+++++.|++.||+|+|+.+.++..+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLADL-----GLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 3444555555555556777888888775 99999999999999999999999999999999999998888877777
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.++... ..+.+...+..++.|++.+..++.....+.+.+++ ++|++++|+.+....+|+.++|.+.+.
T Consensus 101 ~~~~~~~---~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 101 INILFGF---SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR--------TERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHHHHHH---HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543 24555555666677888887788888888888875 789999999999999999999999999
Q ss_pred hhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 477 LSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 477 l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+.+. +|+..|++.+++.++..++..+
T Consensus 170 l~~~~gw~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 170 IALHYGWRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 9999998877766654444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=135.85 Aligned_cols=148 Identities=13% Similarity=0.005 Sum_probs=112.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHH---HhccccccchhHHHHHHHHHHHHhhhccC
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGL---FGMGYFLDIHAFGFYLIMQMVAGLFQATG 182 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~---~~~a~~~~~~~~~~l~~~r~l~G~~~g~~ 182 (538)
..+.++..+...++..++.++.|+++||+|||++++.+.++..++.+. ...+ ++...+++.+++.|++.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS-----NVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHH
Confidence 666777888889999999999999999999999988877654433322 2222 56777888999999887777
Q ss_pred chhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009268 183 WPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVG 259 (538)
Q Consensus 183 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 259 (538)
......++.+.+|++.|+.++++......++..++|.+.+++.+ .+|+.+++...+.+++. ++..+++||+|++..
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~-~~~~~~~pes~~~~~ 437 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIG-LITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHHHhccccCCCC
Confidence 77778888999999999999997555556667788888887763 35787777666666554 445556799988654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=131.43 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=141.6
Q ss_pred hccCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH-HhHHHHHH
Q 009268 311 CLIPG-VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK-LKARATTA 388 (538)
Q Consensus 311 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~ 388 (538)
+++|+ ++.+.+..++..+.+++...++|.|+++. +++|++..+++.+.+.+.++..++.+++|+++|| +|||+.+.
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~--~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~ 83 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ--AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV 83 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence 34444 45566677777899999999999999763 0138999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHH
Q 009268 389 ATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAA 468 (538)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 468 (538)
.+..+.+++.+++.. ..+.+...+...+.|++.+...+.....+.+.+++++ .+.|++++++.+...++|..
T Consensus 84 ~~~~~~~~g~~~~~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~-----~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 84 LGGIVLMLGHFMLAM---SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD-----MPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHHHHHHHHh---cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC-----cccccceehhHHHHHHHHHH
Confidence 888887777665543 2344455556667788888778888888888877522 12477789999999999999
Q ss_pred HhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHH
Q 009268 469 LGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 469 i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 500 (538)
+||.+.|++.+. +|+..|.+.++..+++.+..
T Consensus 156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 999999999988 99999988776655544333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=127.96 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=133.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARATTAATFM 392 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~ 392 (538)
+.++..+...+...+.+|++..++|.|+.+. +|++..+++.+...+.....++.+++|+++||+ |||+.+..+.+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~----lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ----LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 3456666677778889999999999999987 799999999999999999999999999999999 99999988888
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 393 YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
+..++.+++... ..+.....+.+.+..++.+...+...+.+.+.+++++ +.|.+++++..+..++|+.++|.
T Consensus 85 l~~lg~lll~~~--~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~------~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 85 LMAIGHVVLGAS--EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD------PRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHHHHHh--hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC------ccccceehHHHHHHHHHHHHHHH
Confidence 877766544321 1111222233333344455555666778888887622 36788899999999999999999
Q ss_pred HHHHhhcc-CchHHHHHHHHHHHHHHHHH
Q 009268 473 LTGFLSTQ-GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 473 ~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 500 (538)
+.|++.+. ||+..|.+.++..+++.+..
T Consensus 157 l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 157 ACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 99999887 99999988766555544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=126.08 Aligned_cols=169 Identities=24% Similarity=0.314 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
.+..++..+........+|.++.+. +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEE----LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCC----STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHH
Confidence 3455666666777777788566665 699999999999999999999999999999999999988888887777734
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
+..+. .+.+..++..++.|++.+...+....++.+.+++ ++|+++.|+.+....+|..++|.+.+.+.+
T Consensus 78 ~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 146 (352)
T PF07690_consen 78 LLAFA---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPP--------EERGRAFGILSAGFSLGSILGPLLGGFLIS 146 (352)
T ss_dssp HHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred Hhhhh---hhHHHHhhhccccccccccccccccccccccchh--------hhhhhccccccchhhhhhhcccchhhhhhh
Confidence 44321 4455777888899999988899999999988886 789999999999999999999999999997
Q ss_pred c-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 480 Q-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 480 ~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
. +|+..|++.+++.++..++...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~il~~~~ 171 (352)
T PF07690_consen 147 YFGWRWAFLISAILSLIAAILFILF 171 (352)
T ss_dssp HCHHCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccccchhhhhhhhHhhh
Confidence 7 99999999988888876643333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=126.93 Aligned_cols=174 Identities=22% Similarity=0.281 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
..+.+.+...++.--.+..-.|...++. |+|..+.|.+.+.+.+..-++.++.|.++||.+.|+.+..+.++.++
T Consensus 32 ~~~fiGYa~fYl~RknF~~a~p~l~e~~-----~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 32 LSIFIGYAAFYLTRKNFNLAMPALIEDG-----GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHhHhhccHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 3334444444444445666667666665 89999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH--
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT-- 474 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~-- 474 (538)
..+++.+ .++.+.+.++..+-|.+.+...|+..-.+..-++. ++||+..++-|+..++|+++.|.+.
T Consensus 107 ~nil~Gf---s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr--------~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 107 VNILFGF---SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR--------KERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred HHHHHhh---hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc--------cccCceEEEehhhhhcccchHHHHHHH
Confidence 8888766 35788888899999999999999999999999986 8899999999999999999999999
Q ss_pred HHhhcc-CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 475 GFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 475 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
+.+.++ +|+.+|++-++++++..++.++..+.
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888 99999999999998888777766553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=128.26 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+.+.+..++.....+....++|.|+++. +|++..+.|+..+...+...+.+++.|+++||+++|+.+..+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~ 88 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQ----LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence 4556777888888888899999998877 699999999999999999999999999999999999999888887777
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
..+.... .++.+...+..++.|++.+...+...+.+.+..++ +.++++.|+.+....+|..+||.+.|.
T Consensus 89 ~~~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~g~~ig~~l~g~ 157 (400)
T PRK11646 89 GFATMAI---AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP--------HQRGRFFSLLMMQDSAGAVIGALLGSW 157 (400)
T ss_pred HHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 24566666777777887776677777888887775 789999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHH
Q 009268 477 LSTQGWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 477 l~~~g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.+.+|+..|++.+.+.++..++..
T Consensus 158 l~~~g~~~~f~~~~~~~~~~~i~~~ 182 (400)
T PRK11646 158 LLQYDFRLVCATGAVLFVLAAAFNA 182 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9855999999887777666554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=139.92 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=122.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++ ++...+++++++.|++.++.++...+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~l~g~~~~~~~~~~~a 671 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-----NSESAMIALLCLFGGLSIAAWNALDV 671 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777889999999999999999999999999999999999998887 77888888899999888888899999
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
+++|++|.++|++++|+..+...+|.++||++++.+...+...+|++.+++.++.+ ++..++||+.
T Consensus 672 ~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~-ll~~~LPET~ 737 (742)
T TIGR01299 672 LTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGG-LLALKLPDTR 737 (742)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence 99999999999999999999999999999999998876666778888777766654 4444567754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=126.95 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+.+.+..++..+........+|.|..+. +.+..+.+++.+...++.+++.++.|+++||+|||+.+..+..+..+
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~ 76 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVLAG-----TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAV 76 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHH
Confidence 3455667777777777888889998886 89999999999999999999999999999999999998888777666
Q ss_pred HHHHHHhhc--cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH
Q 009268 397 PSMLLYRTY--GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT 474 (538)
Q Consensus 397 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 474 (538)
+.++..... ...+.+..++..++.|++.+...+....++.+..++ ++|+++.|+.+....+|..++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l~ 148 (365)
T TIGR00900 77 LVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE--------EQLTQANSLSQAVRSLFYIVGPGIG 148 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--------HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555543321 112666777777888888888888888888888875 7899999999999999999999999
Q ss_pred HHhhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 475 GFLSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 475 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+.+.+. +|+..|++.++..+++.++...
T Consensus 149 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 149 GLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999887 9999998877666655444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=133.53 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=126.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++ ++.+.+++.+++.|++.+...+.
T Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 261 TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----TGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998888887 88999999999999998888788
Q ss_pred hhhhhhcccccCccchhhHH-HHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGV-WNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPE 256 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 256 (538)
...++.+.+|++.|+...+. ++....+|.++++++.|++. .+|||..|++.+++.++..++.++.++++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 88899999999888887665 66778899999999999988 4799999999888887766666666655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-12 Score=126.06 Aligned_cols=171 Identities=13% Similarity=0.070 Sum_probs=137.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH-HhHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK-LKARATTAATFMY 393 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~ 393 (538)
.++.++...+...+.+|+...+++.|+++. +|++..+++.+...+.....+..+++|+++|| +|||+.+..+..+
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~----lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQ----LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 356666777888899999999999999987 79999999888888887777778899999999 9999999999998
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 394 AAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
..++.+.+.... ......++...+.|++.+...+...+.+.+.+|+++ ++++.++++.....++|..++|.+
T Consensus 91 ~~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~------~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 91 LAIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD------PRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc------hhhhcchhHHHHHHHHHHHHHHHH
Confidence 888776665421 122233355666788888888888899999887632 345778999999999999999999
Q ss_pred HHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 474 TGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 474 ~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
.|++.+. ||+..|++.++..+++.
T Consensus 163 ~g~l~~~~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 163 APVIADKFGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHH
Confidence 9999998 99999988655444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-12 Score=127.62 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
.+|.+.++.++.....+.+..++|.+.++. |.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSL-----GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 467777888888888888889999999876 999999999999999999999999999999999999988776666
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH
Q 009268 395 AIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT 474 (538)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 474 (538)
.++.++... ..+.+..++..++.|++.+...+.....+.+.+++ +.++++.|+.+....+|..++|.+.
T Consensus 86 ~~~~~~~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 86 TLGSLFCAL---SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--------EQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHH---hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 655544332 24566667777888998888888888888888775 7889999999999999999999999
Q ss_pred HHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 475 GFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 475 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
|.+.+. +|+..|.+...+..++.++....
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 99999988777666655554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=130.07 Aligned_cols=182 Identities=18% Similarity=0.109 Sum_probs=141.4
Q ss_pred cchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 009268 305 VGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR 384 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 384 (538)
.+++.+.++|.++.+.+..++..+........+|.+.++. +.++.+.|++.+...++.++++++.|+++||++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~ 82 (417)
T PRK10489 8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-----TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRK 82 (417)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc
Confidence 3445556788888888888888888888888899998886 77999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh--hccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH
Q 009268 385 ATTAATFMYAAIPSMLLYR--TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT 462 (538)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 462 (538)
+.+..+..+.+++...+.. .....+.+...+..++.|++.+...+.....+.+.+++ +.++++.++.+..
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 154 (417)
T PRK10489 83 KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--------ENLMQAGAITMLT 154 (417)
T ss_pred eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--------HHHHHHHHHHHHH
Confidence 9887766655554433321 11233455555666677777666667777777777765 7789999999999
Q ss_pred hHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 499 (538)
..+|..+||.+.|.+.+. +|+..+++.++..+++.++
T Consensus 155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T PRK10489 155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP 192 (417)
T ss_pred HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 8888888776666554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.9e-12 Score=118.16 Aligned_cols=175 Identities=21% Similarity=0.267 Sum_probs=158.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
..+.+.++.|......+.....+|...++. |.|..++|.+.+.++.+..++.++...+.||+.||+.+.....+.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl-----~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADL-----GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 456778888999999999999999999997 999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH
Q 009268 395 AIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT 474 (538)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 474 (538)
.++.++... .++.+...+.=++.|+..+..++.......+.+|+ ++|+++.++...-..+...+|.+++
T Consensus 89 i~~n~l~al---Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--------~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 89 IVSNLLSAL---APSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--------GKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------cchhhHHHHHHHHHHHHHHHhccHH
Confidence 887777665 36888888888999999999999999999999997 8899999999999999999999999
Q ss_pred HHhhcc-CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 475 GFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 475 g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
.++-|. ||+.+|+..+.+.+++.+..+...+
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999 9999999999998887777665554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=128.90 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=115.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchh--HHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHA--FGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~--~~~l~~~r~l~G~~~g~~~ 183 (538)
..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+. ++ ...++...++.|++.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~g~~~ 313 (377)
T TIGR00890 239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----PMLNDVLFLATVALVFFTWGGTI 313 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----ccchhHHHHHHHHHHHHHhccch
Confidence 7788999999999999999999999999999999999999888888877765 43 3335566788898888888
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHH
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVM 242 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~ 242 (538)
+....++.|.+|+++|++++|+......+|..++|.+.+.+. +.||++.|++.+++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999887 57999999998776655
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=125.38 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=118.9
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
+.++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+. ++.+.+++.+++.|++.+...+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~~~~~ 324 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIGAALTGFGFSLVFPALG 324 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666788889999999999999999999999999988888888888776 7888888899999999998888888
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
..+.|.+|+++|+++++++.....+|..+++++.+.+. ..||+..|++.+++.++..++.++.
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999988888887 5799999999888777754444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=125.57 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=114.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.|++.+...+...++.+++|+++||+|||+.+..+.+...+......+. ++.+.+++.+++.+++.+...+.
T Consensus 251 ~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 251 EKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----HSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788988888888888899999999999999998887776666555555555 77888888999888887777777
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
...+..|.+|+ +|++++++.+....+|..+||.+++.+.+ +||+..|++.+++.++. ++..+..||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcC
Confidence 77888898875 69999999999999999999999999884 79999999877776664 444445553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=126.97 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.+.+.+.+.++..++.+++|++.||+|||+.+..+.++..++.+...+. ++.+.+++.+++.|++.+...+...+
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----QTPLQLGILRFLLGAADGALLPAVQT 334 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 4667777888888999999999999999999999988888888777776 78888899999999999999999999
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
.+.+..|+++|++.+++......+|..+||.+++.+. ++||+..|++.+++.++..+..++..++
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 5799999999998888766655554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=120.46 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
++...+..++.......+...+|.+.++. |++..+.+++.+...++..++.++.|++.||+|+|+.+..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYF-----NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445555666566666777788877664 9999999999999999999999999999999999999888777766
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
++.++... .++.+...+..++.|++.+...+.....+.+..++ +.|+.+.+..+....+++.++|.+.+
T Consensus 84 i~~~l~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~ 152 (394)
T PRK03699 84 LAVAGLMF---SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG--------KQRGSRLLFTDSFFSMAGMIFPIIAA 152 (394)
T ss_pred HHHHHHHH---cchHHHHHHHHHHHHHhhHhhccchhHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555543 24566666777788888877777777778787764 77899999988888899999999988
Q ss_pred Hhhcc--CchHHHHHHHHHHHHHHHH
Q 009268 476 FLSTQ--GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 476 ~l~~~--g~~~~~~~~~~~~~~~~~~ 499 (538)
.+.+. +|+..|.+.+++.++..++
T Consensus 153 ~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 153 YLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH
Confidence 87654 8999998877766655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-11 Score=123.55 Aligned_cols=173 Identities=15% Similarity=0.096 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
..+++..++...-......-+|.+..+. |.+..+.+++.+.+.++...+.+..|+++||+|||+.+..+..+..+
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l-----~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTL-----GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455666666666677778889888775 89999999999999999999999999999999999999988888777
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.++... .++.+..++.-++.|++.+...+.....+.+.+++ ++.|+++.|+......+|..+||.+.|.
T Consensus 84 ~~~~~~~---a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-------~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 84 ASLAAAF---SPTASWLIATRALLAIGAAMIVPATLAGIRATFTE-------EKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666554 35677777777888888887777777777676643 3789999999999999999999999999
Q ss_pred hhcc-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 477 LSTQ-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 477 l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
+.+. +|++.|++...+.++..++..+..
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998 999999988777766655554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=119.20 Aligned_cols=170 Identities=22% Similarity=0.283 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
.++...++.+......+.+..+.|.++++. +|++..+.+++.+...++.+++.++.|+++||+|||+.+..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDD----LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLL 77 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHH----hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 456677777777778888888899777776 6999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhhccCc-hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 395 AIPSMLLYRTYGSV-SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 395 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
.++.++.... . +.+..++..++.|++.+ .+......+.+..++ ++|+++.++.....++|..+++.+
T Consensus 78 ~i~~~~~~~~---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 78 AIPCLWAGLA---VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPK--------KIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHHH---hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCH--------hhhhHHHHHHHHHhHHHHHHHHHH
Confidence 7766655442 3 55666666677787744 455566777777765 788999999998888888888777
Q ss_pred HHHhhc----------c-CchHHHHH-HHHHHHHHHHHH
Q 009268 474 TGFLST----------Q-GWDAVFIM-LMVGALIAGLLL 500 (538)
Q Consensus 474 ~g~l~~----------~-g~~~~~~~-~~~~~~~~~~~~ 500 (538)
.+.+.+ . +|+..|++ .+++..+..++.
T Consensus 146 ~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 184 (366)
T TIGR00886 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLI 184 (366)
T ss_pred HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHH
Confidence 766553 2 68888843 344444433333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=123.21 Aligned_cols=164 Identities=19% Similarity=0.231 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 009268 324 FFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 403 (538)
+............+|.+.++. |.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.+....
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 89 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADL-----STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL 89 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 333444445555667666665 999999999999999999999999999999999999988887777766665544
Q ss_pred hccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-Cc
Q 009268 404 TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GW 482 (538)
Q Consensus 404 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 482 (538)
.++.+...+..++.|++.+...+.....+.+..++ +.|+++.|+.+....+|..++|.+.+.+.+. +|
T Consensus 90 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 158 (385)
T TIGR00710 90 ---SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG--------EELSRIYSILMPVLALAPAVAPLLGGYILVWLSW 158 (385)
T ss_pred ---HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 24566667777888888888888888888888875 8899999999999999999999999999887 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 009268 483 DAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+..+++.+++.++..++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 159 HAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999988877776665554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=125.49 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV 408 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
....+....|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++..+.... .
T Consensus 9 ~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~ 80 (399)
T TIGR00893 9 DRANLSFAAPMLQED-----LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---G 80 (399)
T ss_pred HHHhhhHhHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---c
Confidence 334445555654444 59999999999999999999999999999999999999888877776666555442 3
Q ss_pred hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHH
Q 009268 409 SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFI 487 (538)
Q Consensus 409 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~ 487 (538)
+.+...+..++.|++.+...+....++.+.+++ +.|+++.++.+....+|..++|.+.+.+.+. +|+..|+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 152 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA--------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI 152 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH--------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence 667777788889999888888888888888875 8899999999999999999999999988887 9999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 009268 488 MLMVGALIAGLLLSRL 503 (538)
Q Consensus 488 ~~~~~~~~~~~~~~~~ 503 (538)
+.+++.++..++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 153 IEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 8877776655554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=126.34 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009268 323 LFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLY 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 402 (538)
+++.......+....|.+.++ +|++..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 78 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEE-----IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG 78 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHH-----hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH
Confidence 344455556666667765554 499999999999999999999999999999999999999888877777666655
Q ss_pred hhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH-HHHHhhcc-
Q 009268 403 RTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL-LTGFLSTQ- 480 (538)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~-~~g~l~~~- 480 (538)
.. .+.+..++..++.|++.+...+.....+.+.+++ +.|+++.|+.+....+|..++|. +.+.+.+.
T Consensus 79 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 147 (379)
T TIGR00881 79 FS---TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR--------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY 147 (379)
T ss_pred Hh---hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCH--------hhheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence 42 4666777778888998888888888898888875 77899999999999999999994 55666555
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 481 GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 481 g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
+|+..|++.+++.++..++.++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 148 SWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred CchhHHHHHHHHHHHHHHHHheeeC
Confidence 8999988887777665555544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=126.48 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 009268 324 FFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 403 (538)
+.............|.+.++. |.+..+.+++.+...++.+++.++.|+++||+|||+.+..+..+..++.++...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 101 (398)
T TIGR00895 27 LMDGYDLAAMGFAAPAISAEW-----GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL 101 (398)
T ss_pred HHHHHHHHHHHhhHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555666666554 999999999999999999999999999999999999988887776665555443
Q ss_pred hccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-Cc
Q 009268 404 TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GW 482 (538)
Q Consensus 404 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~ 482 (538)
..+.+..++..++.|++.+...+.....+.+..++ +.|+++.|+.+....+|..+++.+.+.+.+. +|
T Consensus 102 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 102 ---ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK--------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred ---ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCH--------HhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 24566667777888998888889999999888875 7899999999999999999999999999887 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 009268 483 DAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+..+++.+++.++..++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~ 191 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRF 191 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHh
Confidence 988888765555554444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=120.35 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=139.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
+.++.+.+..+......+.....+|.+.++. |.+..+.+++.+...++.++++++.|++.||+|||+.+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDV-----GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHc-----CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 4466677777888888888888888887765 99999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 394 AAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
.+++.++... .++.+..++..++.|++.+...+.....+.+..++ ++++.+.++......++..++|.+
T Consensus 78 ~~~~~~l~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 78 CVIGNAMFTL---SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--------GKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHH---hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--------HHhhHHHHHHHHHHHHHHHHhccH
Confidence 7776665544 35677777777888888877777666666666654 678889999999999999999999
Q ss_pred HHHhhcc-CchHHHHHHHHHHHHHHHHH
Q 009268 474 TGFLSTQ-GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 474 ~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 500 (538)
.+.+.+. +|+.+|++.+++.++..+..
T Consensus 147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 147 GTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 9998887 99999998887766555433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=120.29 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
.....+.....+|.+.++. |+++.+.++..+...++..+++++.|++.||+|||+.+..+..+.++..++...
T Consensus 32 ~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-- 104 (394)
T PRK10213 32 LIIVEFLPVSLLTPMAQDL-----GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-- 104 (394)
T ss_pred HHHHHHHHHhhHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH--
Confidence 3334444455677777665 999999999999999999999999999999999999998888888776555443
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchH
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDA 484 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~ 484 (538)
.++.+..++.-++.|++.+...+.....+.+.+++ ++|+.+.++.....++|..++|.+.+.+.+. +|+.
T Consensus 105 -~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~ 175 (394)
T PRK10213 105 -ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPP--------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN 175 (394)
T ss_pred -HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 25677777777888999888888888888888875 8899999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHH
Q 009268 485 VFIMLMVGALIAG 497 (538)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (538)
.|++.+++.+++.
T Consensus 176 ~f~~~~~l~~~~~ 188 (394)
T PRK10213 176 VFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9988776555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=124.33 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+...+...........+....| ++++. |+++.+.++..+...++..++.++.|+++||+|+|+.+..+..+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 30 LGIFFGYAAYYLVRKNFALAMP-YLVEQ-----GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHhccHHhhhH-HHHHc-----CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3333333333333333444555 44555 89999999999999999999999999999999999988877766666
Q ss_pred HHHHHHhhcc-CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 397 PSMLLYRTYG-SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 397 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
+.++...... ..+.+...+..++.|++.+..++.....+.+.+|+ +.|++++|+.++...+|+.+++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ--------SERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc--------ccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 5555432211 12344445556677888877778777888887775 77999999999999999999998877
Q ss_pred Hhhc-c-CchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 476 FLST-Q-GWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 476 ~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
...+ . +|+.+|++.+++.++..++..++.+
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6544 3 8999999888887776655554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=121.69 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+.+.++.+......+.....+|.+.++. |.++.+.++..+.+.++..++++..|++.||+|||+.+..+..+.++
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 12 VTLALAAFIFNTTEFVPVGLLSDIAQSF-----HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred HHHHHHHHHHHhHHHHHHcchHHHHhHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3344444443333333444567766654 99999999999999999999999999999999999999988777777
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.+.... .++.+...+.-++.|++.+...+.....+.+..++ ++|+++.|+......+|..++|.+.+.
T Consensus 87 ~~~~~~~---~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~g~~~~~~~~g~~ig~~l~~~ 155 (390)
T PRK03545 87 SHVLSAL---AWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPA--------GKKAQALSLLATGTALAMVLGLPLGRV 155 (390)
T ss_pred HHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------hhhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 6655544 24666666677777887776677777888877775 788999999999999999999999999
Q ss_pred hhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 477 LSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 477 l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+.+. +|+..|++.+++.++..+....
T Consensus 156 l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 156 IGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 9999999888777665544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=120.19 Aligned_cols=175 Identities=19% Similarity=0.121 Sum_probs=126.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 009268 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFM 392 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 392 (538)
+|.+|.+....++.......+..++|.|+.+. +|+++.+.|++.+...++..+++++.|+++||+|||+.+..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV----NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 47788888889999999989999999999987 69999999999999999999999999999999999999876655
Q ss_pred HHHHHHHHHHhhccCc-----hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHH
Q 009268 393 YAAIPSMLLYRTYGSV-----SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGA 467 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 467 (538)
..++....+....... ......+..++.|++.+...+....+..+.. +.++...|.......+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~g~ 146 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----------RNSNFEYGKARMFGCVGW 146 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----------hhcccccchhhhhcccHH
Confidence 5443332221110011 1111222334556666665666555544321 222345677777889999
Q ss_pred HHhHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Q 009268 468 ALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 468 ~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~ 501 (538)
.++|.+.|.+.+.+|+..|++.+++.++..++.+
T Consensus 147 ~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 147 ALCASIAGILFSIDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 9999999988777999999888777776655443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=125.15 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 397 (538)
.+++..+............+|.+.++. |.+..+.+++.+.+.++.+++.++.|++.||+|||+.+..+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDL-----GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 445555666666666777788887775 999999999999999999999999999999999999998888777776
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 398 SMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.++... ..+.+..++..++.|++.+...+....++.+.+++ +.|+++.++......+|..++|.+.|.+
T Consensus 81 ~~~~~~---~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~~~~l 149 (485)
T TIGR00711 81 SLLCGV---APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP--------EKRGRAMAIWGLTVLVAPALGPTLGGWI 149 (485)
T ss_pred HHHHhC---cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHhhhhhccHhHh
Confidence 655543 35667777778888998888888888999888885 8899999999999999999999999999
Q ss_pred hcc-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 478 STQ-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 478 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
.+. +|+..|++.+.+.++..++..+..
T Consensus 150 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 150 IENYHWRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred ccCcCceehhhhhhHHHHHHHHHHHHHc
Confidence 988 999999887777666655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-11 Score=119.36 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009268 321 FCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSML 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 400 (538)
...++.....+......|.+.++. |.++.+.+++.+...++.+++.++.|+++||+|||+.+..+..+..+..++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (406)
T PRK11551 22 LVALLEGLDLQSAGVAAPRMAQEF-----GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLA 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 344444555556666677777665 999999999999999999999999999999999999998887766665544
Q ss_pred HHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 401 LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
... ..+.+...+..++.|++.+...+.....+.+.+++ +.|++++++.+....+|..+++.+.+.+.+.
T Consensus 97 ~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 97 TAQ---AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP--------RLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHH---hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 433 24666777778888998888888888888888875 8899999999999999999999998888777
Q ss_pred -CchHHHHHHHHHHHHHHHHHHH
Q 009268 481 -GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 481 -g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+|+..|++.+++.++..++...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 166 AAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988877665555444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=122.38 Aligned_cols=169 Identities=19% Similarity=0.173 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
.+.+++............| .+++. +|++..+.+++.+.+.++..+++++.|++.||+|||+.+..+..+..+..+
T Consensus 14 ~~~~~~~~~d~~~~~~~~~-~l~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 14 FILFIFSFLDRINIGFAGL-TMGKD----LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHhhhhhHHHHHH-hhHhh----cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3334444444445555556 55555 699999999999999999999999999999999999998888777777666
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
+... .++.+..++.-++.|++.+...+.....+.+.+++ +.|+++.|+.+....+|..+++.+.+++.+
T Consensus 89 ~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 89 ATMF---ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPA--------YFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHH---hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6544 24566667777888999888888887888888875 789999999999999999999999998863
Q ss_pred ------c-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 480 ------Q-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 480 ------~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
. +|+.+|++.++..++..++..++.
T Consensus 158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 3 899999987777666555444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-11 Score=118.88 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009268 321 FCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSML 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 400 (538)
...+............+|.+.++. |.+..+.++..+...++..++.++.|+++||+|||+.+..+.....+...+
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADL-----NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 334444455555666788877775 999999999999999999999999999999999999988887776666555
Q ss_pred HHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 401 LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
... ..+.+...+..++.|++.+...+.....+.+..++ +.|+++.++.+....++..++|.+.+.+.+.
T Consensus 85 ~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 85 CSL---AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD--------RRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHH---hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 443 23555556666777888777777788888888775 8899999999999999999999999888777
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 481 -GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 481 -g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
+|+..|++.+++.++..++.....
T Consensus 154 ~g~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 154 FPWQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999888877776665554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-11 Score=119.36 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
....+..+...+..+......|.+.++ +|++..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAEVAGE-----FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555566666666666667766555 499999999999999999999999999999999999998888777766
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.++... ..+.+..++..++.|++.+..++.....+.+..++ +.|+++.|+.+....+|..+++.+.+.
T Consensus 90 ~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 90 GTLACGF---APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPK--------HLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHHHHH---hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh--------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555543 24666667778888998888888888888888875 788999999999999999999999998
Q ss_pred hhcc-C--chHHHHHHHHHHHHH
Q 009268 477 LSTQ-G--WDAVFIMLMVGALIA 496 (538)
Q Consensus 477 l~~~-g--~~~~~~~~~~~~~~~ 496 (538)
+.+. + |+..|.+.++..++.
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHHH
Confidence 8776 4 898887655444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-11 Score=118.24 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=126.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
+.+....++.++.....+....+++.++++. |.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~ 87 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL-----GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLL 87 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHh-----CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 3455666777777777777778889998775 99999999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHh-hccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHH-HHhH
Q 009268 394 AAIPSMLLYR-TYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGA-ALGP 471 (538)
Q Consensus 394 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~i~~ 471 (538)
..++.++... .....+.+...+..++.|++.+...+.....+.+..++ ++|++++|+.++...+|. .++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~g~~~~g~ 159 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ--------DNLSSAVGWFWAVYSIGIGVFGS 159 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666543321 11123455555556666776665555556666666665 889999999999999986 5789
Q ss_pred HHHHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 472 LLTGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 472 ~~~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
.+.+.+.+. +++..++.......+..
T Consensus 160 ~~~~~l~~~~g~~~~~~~~~~~~~~~~ 186 (402)
T TIGR00897 160 YYSSYAIPAFGEMNTLWSALAFVLTGG 186 (402)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHH
Confidence 998888877 76655554444333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=125.70 Aligned_cols=150 Identities=22% Similarity=0.190 Sum_probs=114.4
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccch------hHHHHHHHHHHHHhhh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIH------AFGFYLIMQMVAGLFQ 179 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~------~~~~l~~~r~l~G~~~ 179 (538)
..+.++......++..++.+++|+++||+|||+.+..+.++.+++.++.++......+ +...+....++.+...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (481)
T TIGR00879 318 TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA 397 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999999999999988888777776621000001 3333333333333333
Q ss_pred ccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 180 ATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 180 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
....+....++.|.+|+++|++++++......+|.+++|.+.+.+. +.+|++.|++.++++++.+++.+++.||++
T Consensus 398 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 398 MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred ccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 3344666777899999999999999999999999999999988877 579999999998888887666666666644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=118.77 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=127.6
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 009268 312 LIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATF 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 391 (538)
.++.++.+.+..++...........+|.++.+. +|.|..+.|++.+...++..+++++.|+++||+|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~----lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHD----LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM 88 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHh----cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence 345566667777777777777778888888776 6999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHh--hcc---CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH
Q 009268 392 MYAAIPSMLLYR--TYG---SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG 466 (538)
Q Consensus 392 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (538)
....++.+.... ... ..+.+..++.-++.|++.+...+.....+.+.+++ ++|+++.|+.......|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~a~~~~~~~~~~g 160 (392)
T PRK12382 89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP--------KHSGKVMSWNGMAMYGA 160 (392)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--------cccchhhhHHHHHHHHH
Confidence 665554332211 111 12445556666778887776666666777777765 78899999999989999
Q ss_pred HHHhHHHHHHhhcc-CchHHHHHHH
Q 009268 467 AALGPLLTGFLSTQ-GWDAVFIMLM 490 (538)
Q Consensus 467 ~~i~~~~~g~l~~~-g~~~~~~~~~ 490 (538)
..++|.+.+.+.+. +|+..+.+..
T Consensus 161 ~~~g~~~~~~l~~~~g~~~~~~~~~ 185 (392)
T PRK12382 161 LAAGAPLGLLLHSHFGFAALALTTM 185 (392)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999998887 8886655433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-11 Score=118.25 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009268 321 FCLFFAKLVAYTFLYWLPFY--LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPS 398 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 398 (538)
+..+.....+.....+.|.+ +.+. +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQAD----LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 33333444444555555544 3344 59999999999999999999999999999999999999888777666655
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
++... ..+.+...+..++.|++.+...+.....+.+.+++ +.++...+..+....++..++|.+.+.+.
T Consensus 86 ~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 86 LGMLW---VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA--------QKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHH---hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 24556666666777777666556566667777764 66778888888888999999999999999
Q ss_pred cc-CchHHHHHHHHHHHHHHHHHH
Q 009268 479 TQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 479 ~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+. +|+..|++.+++.++..++..
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHH
Confidence 88 999999888777766555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-11 Score=118.75 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=115.9
Q ss_pred HHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-cCchHHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY-GSVSQTV 412 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 412 (538)
....| ++.+. |++..+.++..+...++..+++++.|+++||+|+|+.+..+..+.++..+++.... ...+.+.
T Consensus 49 ~~~~p-~l~~~-----g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 49 ALAMP-YLVEQ-----GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HHhhH-HHHHc-----CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 34455 45554 89999999999999999999999999999999999998888877776665554321 1224555
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHH-hHHHHHHhhcc-CchHHHHHHH
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAAL-GPLLTGFLSTQ-GWDAVFIMLM 490 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i-~~~~~g~l~~~-g~~~~~~~~~ 490 (538)
.++..++.|++.+..++.....+.+.+++ +.|+++.|+.+....+|+.+ +|.+...+... +|+..|++.+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCCh--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56667788888887777777777777775 78999999999999988755 44433333323 8999998887
Q ss_pred HHHHHHHHHHHHHhh
Q 009268 491 VGALIAGLLLSRLVI 505 (538)
Q Consensus 491 ~~~~~~~~~~~~~~~ 505 (538)
++.++..++..++.+
T Consensus 195 ~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 195 FAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHHHHHHHHHcc
Confidence 776665555544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-11 Score=115.83 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA-IPS 398 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~-~~~ 398 (538)
.+..++..+........+|.|+++. +|.+..+.|++.+...+..++.+++.|+++||+|||+.+.....+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 78 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEE----VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC 78 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3456777777788888899998877 69999999999999999999999999999999999887655443333 333
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhH--HHHHHHHhHhHHHHHHhHHHHHH
Q 009268 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALA--TVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
++... .++.+..++..++.|.+.+...+.......+..++ +.|+ ...+.......+|..++|.+.+.
T Consensus 79 ~~~~~---~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~ig~~~~~~ 147 (375)
T TIGR00899 79 LLFAW---NRNYFLLLVLGVLLSSFASTANPQLFALAREHADR--------TGREAVMFSSVMRAQISLAWVIGPPLAFW 147 (375)
T ss_pred HHHHh---cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh--------cchhhHHHHHHHHHHHhHHHHHhhhHHHH
Confidence 33222 23455444444555555555555555555554443 3333 33677777888999999999999
Q ss_pred hhcc-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 477 LSTQ-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 477 l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
+.+. +|+..|++.+.+.++..++.++..
T Consensus 148 l~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 176 (375)
T TIGR00899 148 LALGFGFTVMFLTAALAFVLCGVLVWLFL 176 (375)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9887 999999988887776665555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=116.30 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
.....+.....+|.+.++ +|++..+.+++.+...++..++.++.|+++||+|+|+.+..+.++.++..++...
T Consensus 48 ~~~~~~~~~~~~~~l~~~-----~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-- 120 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDN-----LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL-- 120 (476)
T ss_pred HHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--
Confidence 333344445555656555 4999999999988889999999999999999999999888777666665554433
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc------
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST------ 479 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~------ 479 (538)
..+.+..++..++.|++.+.. ......+.+.+++ +.||++.|+.+...++|+.+++.+.+.+.+
T Consensus 121 -~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~--------~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 121 -VSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNG--------KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred -hcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcCh--------hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 235555555566778776553 3344566677765 789999999998888888888766655421
Q ss_pred ---c-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 480 ---Q-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 480 ---~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
. +|+..|++.+++.++..++.+++
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 79999998888877666555444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-10 Score=107.27 Aligned_cols=313 Identities=14% Similarity=0.087 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhc
Q 009268 113 DLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGN 192 (538)
Q Consensus 113 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 192 (538)
.++-+..+.+++++.+.+.|+.|.|+.++++...+....+..-+ .|-+.++..-.+.|+|.+..+..--.++++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------~N~y~~yfssallG~Gaallw~GqG~ylt~ 129 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------PNSYYLYFSSALLGFGAALLWTGQGGYLTS 129 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------cchHHHHHHHHHhhhhHHheecccceehhh
Confidence 67777888899999999999999999999999999988877777 677889999999999999999999999999
Q ss_pred ccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh---------Cch-HHH-------HHHHHHHHHHH-----HHHHhh
Q 009268 193 WFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY---------GWG-WSF-------ILPGASIVMGG-----IIVYLF 250 (538)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~---------gwr-~~f-------~~~~~~~~~~~-----~~~~~~ 250 (538)
..+++++.+..++..+....+.++|..+-..+.++ +-+ ..+ .+.-+..++.. +....+
T Consensus 130 ~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~ 209 (461)
T KOG3098|consen 130 NSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF 209 (461)
T ss_pred cCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee
Confidence 99999999999999999999988886555444311 111 111 11111111111 111111
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHH
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVA 330 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (538)
.|.+...... +.. + + ...+..+...+++++|+...+....+..++..
T Consensus 210 ~p~~~~~~~~-------~~~--~-------------~-----------~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~ 256 (461)
T KOG3098|consen 210 LPSKDVVNCK-------SSS--E-------------T-----------SFSELLKLTFKLLKTPKMLLLFPFFFYTGLET 256 (461)
T ss_pred cCccchhhhh-------hhc--c-------------c-----------cHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence 1111000000 000 0 0 11112233456677888777777776666665
Q ss_pred HHHHHHHHHHhhhcccCCcCCC-cchhhhhhhhhhhhhhhHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhcc
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLS-VKTAGNLSTLFDVGGIFGGIIAGYISDKL---KARATTAATFMYAAIPSMLLYRTYG 406 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (538)
.......|..+.-... .+.+ ....+......+++.+++....+.+.+|. |++..+.++..+..+..++.....+
T Consensus 257 Sf~~~iypt~i~ft~~--~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p 334 (461)
T KOG3098|consen 257 SFWISIYPTCISFTRK--LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP 334 (461)
T ss_pred HHHHhccchhhhhhhh--ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc
Confidence 5555566655543300 1222 22344455566777777778888887765 5666677776666666555544332
Q ss_pred Cc---------------hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhH
Q 009268 407 SV---------------SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGP 471 (538)
Q Consensus 407 ~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 471 (538)
.+ +.....++.++.|++-.......+..+....+ +.+..+.++.-+-..++..++-
T Consensus 335 ~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~---------~~~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 335 NDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP---------DDRAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred ccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHHHHh
Confidence 11 23466777788899888888888888888774 4556677776666666666555
Q ss_pred HHHH
Q 009268 472 LLTG 475 (538)
Q Consensus 472 ~~~g 475 (538)
....
T Consensus 406 f~~~ 409 (461)
T KOG3098|consen 406 FFSP 409 (461)
T ss_pred hhhh
Confidence 4433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=115.07 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
++.+++..+..++........+|.+.++ +|.+..+.|++.+...++.+++++..|++.||+|+|+.+..+..+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-----~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-----FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4455566666666665556777776554 59999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
++.+++.......+.+..++..++.|++.+...+....++.+..++ +.+++..++.+....+|..++|.+.+
T Consensus 80 ~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 80 LGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE--------STATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766654322234566667777888998888888877887776664 67888999999999999999999988
Q ss_pred Hhhcc---------------------------CchHHHHHHHHHHHHHHH
Q 009268 476 FLSTQ---------------------------GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 476 ~l~~~---------------------------g~~~~~~~~~~~~~~~~~ 498 (538)
.+... +|+.+|.+.+++.++..+
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77422 478888777776555433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-11 Score=114.64 Aligned_cols=161 Identities=12% Similarity=0.007 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009268 327 KLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYG 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (538)
......+...+|.+.++. |.+..+.|++.+.+.++..++++..|+++||+|||+.+..... ..+...+... .
T Consensus 4 ~~~~~~~~~~lp~i~~~~-----~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~-~~~~~~~~~~-~- 75 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDI-----DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLA-TFAAAAGRLL-D- 75 (368)
T ss_pred hHHHHHHHhhHHHHHHHh-----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHH-H-
Confidence 344555666778777765 9999999999999999999999999999999998876554333 3322222111 1
Q ss_pred CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHH
Q 009268 407 SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAV 485 (538)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~ 485 (538)
..+....++.-++.|++.+. .........+.+|+ ++|+++.++.+....+|..+++.+.+.+.+. +|+..
T Consensus 76 ~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~--------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~ 146 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQPF-LLNAFAPAASQIRE--------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLL 146 (368)
T ss_pred hccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 13566777777788888765 44455556777775 8899999999999999999999999999887 99999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 009268 486 FIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~ 504 (538)
|++.+++.++..++..+..
T Consensus 147 f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 147 IIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9988887777665555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-11 Score=117.54 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=130.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 009268 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFM 392 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 392 (538)
+|.++.+.+..++..+.........+.+..+. +.+..+.+++.+.+.+...+..++.|+++||+|||+.+..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~ 76 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKEL-----HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG 76 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH
Confidence 45677778888888776666666666666665 7888899999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 393 YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
+..+..+..... .+. ++..++.|++.+...+...+.+.+.+++ ++|+++.|+.+....++..+||.
T Consensus 77 ~~~~~~~~~~~~---~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~--------~~~~~a~~~~~~~~~~~~~~Gp~ 142 (393)
T PRK11195 77 IKLLGCLLMLFG---IHP---LLAYGLVGIGAAAYSPAKYGILTELLPG--------EKLVKANGWMEGSTIAAILLGTV 142 (393)
T ss_pred HHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655543321 122 3445678898888899999999999986 88999999999999999999999
Q ss_pred HHHHhhccCchHHHHHHHHHHHHH
Q 009268 473 LTGFLSTQGWDAVFIMLMVGALIA 496 (538)
Q Consensus 473 ~~g~l~~~g~~~~~~~~~~~~~~~ 496 (538)
++|.+.+..+...+.+.+.+.+++
T Consensus 143 lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 143 LGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876665665554444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=114.12 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=125.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
+.++.+.+..++...........+|.|..+. |.|..++|++.+...++..+++++.|+++||+|+|+.+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~ 80 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE-----HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4467777788888888888889999999986 89999999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 394 AAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
..++...... .++.+...+..++.|++.+...+.....+.+..++ +.|+++.|+.+....+|..++|.+
T Consensus 81 ~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 81 FAAGCAGLGL---MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--------RNRGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655443 24666667777888888877777666666666654 778999999999999999999999
Q ss_pred HHHhhcc
Q 009268 474 TGFLSTQ 480 (538)
Q Consensus 474 ~g~l~~~ 480 (538)
.+.+.+.
T Consensus 150 ~~~l~~~ 156 (381)
T PRK03633 150 VSKVSTE 156 (381)
T ss_pred Hhccccc
Confidence 9998775
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=118.35 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+..+.+..++..+........+|.+.++ +|.+..+.+.+.+...++.+++.++.|+++||+|||+.+..+..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-----FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444555555556666666666766655 49999999999999999999999999999999999999888877776
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
++.++... ..+.+...+..++.|++.+..++.....+.+.+++ +.|+.+.++.+....+|..++|.+.+
T Consensus 97 ~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 97 VGTLACGF---APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK--------HLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544 24666777778888998888888888888888885 88999999999999999999999999
Q ss_pred Hhhcc-CchHHHHHHH
Q 009268 476 FLSTQ-GWDAVFIMLM 490 (538)
Q Consensus 476 ~l~~~-g~~~~~~~~~ 490 (538)
.+.+. +|+..|++..
T Consensus 166 ~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 166 LVVPVWGWRALFFIGI 181 (496)
T ss_pred HHhccCCHHHHHHHHH
Confidence 99888 9998887643
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=113.08 Aligned_cols=169 Identities=25% Similarity=0.379 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
+...+..+.............|.+.++. |.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~ 76 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDL-----GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence 3455666777777778888899998876 89999999999999999999999999999999999988888887777
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
..+..... .+.+...+..++.|++.+...+.......+..++ ++|++..++.+....+|..++|.+.+.
T Consensus 77 ~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 77 GSLLLAFA---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP--------KERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCc--------cchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66665442 4667777788888998888889999999888875 788999999999999999999999999
Q ss_pred hhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 477 LSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 477 l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.+. +|+..+++.+++.+++.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 146 LAESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9988 899988887777776655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-11 Score=116.56 Aligned_cols=158 Identities=15% Similarity=0.241 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCch
Q 009268 330 AYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVS 409 (538)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
.......+|.+.++. |.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..+...+.... .+
T Consensus 7 ~~~~~p~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~~ 78 (377)
T PRK11102 7 IDMYLPALPVIAADF-----GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---QT 78 (377)
T ss_pred HHHHhccHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---cc
Confidence 344556678888775 9999999999999999999999999999999999999888877777766655442 45
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHH
Q 009268 410 QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIM 488 (538)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~ 488 (538)
.+...+..++.|++.+...+.....+.+..++ +.|+++.++.+....+|..++|.+.+.+.+. +|+..|++
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 150 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPK--------EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56666777788888887777888888887775 7899999999999999999999999999887 99999988
Q ss_pred HHHHHHHHHHHHHHH
Q 009268 489 LMVGALIAGLLLSRL 503 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~ 503 (538)
.+.+.++..++..+.
T Consensus 151 ~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 151 LALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777776665554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=118.74 Aligned_cols=135 Identities=12% Similarity=0.009 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|.+ ..+.|++.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++ ++.+.+++.+++
T Consensus 235 ~g~s-------~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l 302 (382)
T TIGR00902 235 AGIS-------ASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQIL 302 (382)
T ss_pred CCCC-------HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHH
Confidence 5777 8899999999999999999999999999999999999999999999999988 999999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHH-HHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHH
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMG 243 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~ 243 (538)
.|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|++. ++|+ ..|++.+++.++.
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9999999999999999998 8889999999986 577899999999999998 4575 6677777776653
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=115.81 Aligned_cols=159 Identities=15% Similarity=0.204 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+....+..+...+..+......|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-----LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3344444455455555555556655555 49999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
++.++... ..+.+...+.-++.|++.+..++....++.+..++ +.|+++.|+......+|..+++.+.+
T Consensus 95 ~~~~~~~~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 95 VGTGLSGL---ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK--------HLKSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred HHHHHHHH---HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH--------hHhhHhhhHHHHHHhHHHHHHHHHHH
Confidence 76665544 24566777777888998888888888888888875 78899999999999999999999998
Q ss_pred Hhhcc-CchHHHHHHH
Q 009268 476 FLSTQ-GWDAVFIMLM 490 (538)
Q Consensus 476 ~l~~~-g~~~~~~~~~ 490 (538)
.+.+. +|+..|++..
T Consensus 164 ~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 164 SFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHcccCCHHHHHHHHH
Confidence 88887 9999987644
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=115.43 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=146.8
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 009268 308 FQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATT 387 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 387 (538)
.+++.+++...+.+..++.++....+.+++--++++. |-.+..-|.+......+.++.-++.+++.+|+|+-+.+
T Consensus 365 ~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-----~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~ 439 (618)
T KOG3762|consen 365 GKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-----GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM 439 (618)
T ss_pred HHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-----CCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee
Confidence 3667788888888888888888888888888888887 76777788888888899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH-hHHH
Q 009268 388 AATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT-GSVG 466 (538)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g 466 (538)
..+.....+=++.+.. ..+.|..+.+-++-|+..+..+....+++....|| +.++++.|+.... ..+|
T Consensus 440 ~lgLa~~~~Rf~~~S~---L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp--------~l~at~Q~l~~g~f~GlG 508 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSY---LQNPWMVLPIEILQGITHALIWAAIISYASHVAPP--------GLRATAQGLLQGIFHGLG 508 (618)
T ss_pred eehhhHHHHHHHHHHH---hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC--------cchHHHHHHHHHHhcccC
Confidence 8877766665555443 35778878888899999999999999999988887 7788888888755 4789
Q ss_pred HHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 467 AALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 467 ~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
-.+|++++|.+.+. +-+..|.++++.+++.+++...+
T Consensus 509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 88888888877777665555444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=117.01 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=149.5
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 009268 308 FQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATT 387 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~ 387 (538)
...+|+|.|..+.+...+.+++......-++.++.+. .-|+...+++.....+-.++.++++|.++||++||+++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-----t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-----TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 3558899999999999999998888888888777776 67888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--hhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH
Q 009268 388 AATFMYAAIPSMLLY--RTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465 (538)
Q Consensus 388 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 465 (538)
+..-.+.++..+.+. ......+.+..+++.++.|++.....|...+.+++.++. +....+.++.++..++
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--------~~L~~A~al~s~~~ni 150 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--------EDLPAANALNSISFNI 150 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------hhHHHHHHHHHHHHHH
Confidence 988877665444432 233445677778888999999988999999999999985 7888999999999999
Q ss_pred HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHH
Q 009268 466 GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 466 g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 499 (538)
...+||.++|.+... |...+|.+-++..++...+
T Consensus 151 ar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 151 ARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 8888888877766664443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-09 Score=101.73 Aligned_cols=331 Identities=13% Similarity=0.117 Sum_probs=192.7
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhh
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVV 187 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 187 (538)
..+.+.-+-.+...+..+.+-++.+|+..+.=+..+.++..++.++.+++ ++.+.=+++-.+.+++.|.......
T Consensus 60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----~~v~~~l~Gv~las~ssg~GE~tfL 134 (402)
T PF02487_consen 60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----PSVWVRLLGVVLASLSSGLGEVTFL 134 (402)
T ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----cchhHHHHHHHHHhhhhhhhHHHHH
Confidence 35667777777888888888999999987666666777888899999998 8999888889999999988877777
Q ss_pred hhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 188 AVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYG--WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 188 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~g--wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
.+.+ .+++ ...+-++++.+.++++|+..-..+...| -|..+++...+.++..+..++.+|.++...... +.+
T Consensus 135 ~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~-~~~ 208 (402)
T PF02487_consen 135 SLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQ-ESE 208 (402)
T ss_pred HHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCc-ccC
Confidence 7644 5553 3577888888888888876655555544 478888888877776556666666543222111 111
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhh-ccCchHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQAC-LIPGVIPFAFCLFFAKLVAYTFLYWL-PFYLSQ 343 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 343 (538)
...+.++.....+....+ .....+...++-+ +-|.....++-.+..++..|.++.-+ |...-.
T Consensus 209 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp 273 (402)
T PF02487_consen 209 SEDEAEDDLLESETSESK---------------PDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFP 273 (402)
T ss_pred CCCccccccccccccccc---------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCC
Confidence 000000000000000000 0001111122111 11222224444455555555544332 222211
Q ss_pred cccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHh
Q 009268 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLF 423 (538)
Q Consensus 344 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 423 (538)
.. ..-...+..+....+.+|.++++--...+ |+.+..++.+...+..+..++-..+...++.|..+++.+..|+.
T Consensus 274 ~~---~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLl 348 (402)
T PF02487_consen 274 NS---FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLL 348 (402)
T ss_pred cc---CCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 10 11123344456666777766665433222 33332222222222222222222222235677777788888999
Q ss_pred hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 424 VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.|..+......+.++.++ +.|-.++|.......+|..++..++-.+
T Consensus 349 GGa~YVNtF~~I~~~~~~--------~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 349 GGASYVNTFYRISEEVPP--------EDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hhHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999888888888775 7788889988888888887777665433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=115.19 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009268 321 FCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSML 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 400 (538)
...++..+........+|.+.++. |.++.+.++..+...++..++.++.|+++||+|||+.+..+.....+..+.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARDL-----NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 333444444445555677777665 999999999999999999999999999999999999988877766665555
Q ss_pred HHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 401 LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
... .++.+...+..++.|++.+...+.......+..+. +.++.+.++.+....++..++|.+.+.+.+.
T Consensus 90 ~~~---~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 90 ALF---AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG--------TQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHH---HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433 24566666667777877665555555555555553 6788889999999999999999999999887
Q ss_pred -CchHHHHHHHHHHHHHHHHHH
Q 009268 481 -GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 481 -g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+|+..|++.+++.++..++..
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 999999887766655444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=114.60 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
..+...+|.+.++ +|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+.... ..+.
T Consensus 30 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~~~~ 101 (406)
T PRK15402 30 DMIQPGMLAVVED-----FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL---AQSI 101 (406)
T ss_pred hhHhcchHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH---HccH
Confidence 3344455655555 4999999999999999999999999999999999999988877776666555443 2355
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
+..++..++.|++.+...+.....+.+.+++ +.++++.++......++..++|.+.+.+.+. +|+..|++.
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEE--------ADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 5666666777877776667777778777775 6777888888888889999999999999887 999999888
Q ss_pred HHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLS 501 (538)
Q Consensus 490 ~~~~~~~~~~~~ 501 (538)
+++.+++.+...
T Consensus 174 ~~~~~~~~~~~~ 185 (406)
T PRK15402 174 AALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHH
Confidence 877776655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=121.50 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHH--HhccccccchhHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGL--FGMGYFLDIHAFGFYLIMQ 172 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~--~~~a~~~~~~~~~~l~~~r 172 (538)
+|++ ..+.++..+...++..++.+++|+++||+|||+.++....+..++..+ .... ++.+.+.+.+
T Consensus 289 ~g~s-------~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 356 (467)
T PRK09556 289 LGFS-------KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-----TSEYMYLASL 356 (467)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHH
Confidence 6777 888899999999999999999999999999999876655444433222 2233 5666777888
Q ss_pred HHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhh-hHhHHHHHHHHHHH-------------hCchHHHHHHHH
Q 009268 173 MVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSV-GNISGSLLAASVLD-------------YGWGWSFILPGA 238 (538)
Q Consensus 173 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~l~~-------------~gwr~~f~~~~~ 238 (538)
++.|++.............|.+|+++||.+.|+.+...++ |..++|.+.|++.+ .||+..|++.++
T Consensus 357 ~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~ 436 (467)
T PRK09556 357 FALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDI 436 (467)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHH
Confidence 8888654333333345677999999999999999988886 77899999888877 479999998877
Q ss_pred HHHHHHHH
Q 009268 239 SIVMGGII 246 (538)
Q Consensus 239 ~~~~~~~~ 246 (538)
..++..+.
T Consensus 437 ~~~~~~~~ 444 (467)
T PRK09556 437 AAIGCICL 444 (467)
T ss_pred HHHHHHHH
Confidence 66664333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-10 Score=112.78 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=113.1
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
++.+..+++...+.+.++..++.++.|+++||+|||+.+..+..+..++.++... .++.+..++.-++.|++.+...
T Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~Gi~~~~~~ 122 (413)
T PRK15403 46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF---TTSMTQFLIARFIQGTSICFIA 122 (413)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999988887766665555443 3466666677777787765544
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
+.......+.+++ +.++++.++.+....++..++|.+++.+.+. +|+..|++.+++.+++.+..+
T Consensus 123 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 123 TVGYVTVQEAFGQ--------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5555556566664 6788999999999999999999999998887 999999988887776655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=118.85 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=110.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhcc-Cch
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQAT-GWP 184 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~-~~~ 184 (538)
....++......+...++.+++|+++||+|||++++.+.++.+++.++++.....+..+. ......++.+++.+. ..|
T Consensus 305 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 383 (479)
T PRK10077 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGP 383 (479)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccc
Confidence 555667777788888999999999999999999999999998888877654311111122 222333444444443 336
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-------DYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
....+++|.+|+++|+.++|+......+|.++++.+.+.+. +++|++.|++.+++.++..++.+++.||++
T Consensus 384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 77899999999999999999999999999998866655443 578999999988877776666666666654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=111.54 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
+.....+|....+. |+|..+.+++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++... .++.
T Consensus 26 ~~~~~~lp~i~~~~-----~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~---a~~~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQAS-----GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL---YPQS 97 (393)
T ss_pred hccchhHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH---Ccch
Confidence 45566778777664 999999999999999999999999999999999999999999998888777665 3456
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~ 488 (538)
+..++.-++.|++.+...+.....+.+.++ ++|+.++|+.......|..+++.+.+.+.+. +|+..+.+
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ---------QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 666777788888888777777777766554 5578999999999999999999999988876 78887766
Q ss_pred HHHHHHH
Q 009268 489 LMVGALI 495 (538)
Q Consensus 489 ~~~~~~~ 495 (538)
.++..++
T Consensus 169 ~~~~~~~ 175 (393)
T PRK09705 169 WALPAVV 175 (393)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-10 Score=113.82 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
.+..++|.+..+. |.+..+.+++.+...+...++.++.|+++||++||+.++.+..+..+..++... ..+.+
T Consensus 37 ~~~~~~~~i~~~~-----g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~~~~~ 108 (455)
T TIGR00892 37 AVTVFFKELQQIF-----QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF---SSNVI 108 (455)
T ss_pred chhhhHHHHHHHh-----CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH---hhhHH
Confidence 3455677766665 999999999999988888899999999999999999888877666665554433 23444
Q ss_pred HHHHHH-HHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 412 VNIVLM-MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 412 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
..++.. ++.|++.+...++....+.+.++ +.|+++.|+.+....+|..++|.+.+.+.+. +|+.+|++.
T Consensus 109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~---------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 109 ELYLTAGFITGLGLAFNFQPSLTMLGKYFY---------RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHH---------hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 433332 45577766555555555555553 6689999999999999999999999999888 999999998
Q ss_pred HHHHHHHHHHHHHH
Q 009268 490 MVGALIAGLLLSRL 503 (538)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (538)
+++.+++.+..++.
T Consensus 180 ~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 180 GGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHh
Confidence 88777665544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-11 Score=118.21 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=104.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHH--HHHhccccccchhHHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFV--GLFGMGYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~--~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+. ..++.+.+++..++.|++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---DSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999999998776554443333 122221 11467777788888999988888
Q ss_pred hhhhhhhhcccccCccchhhHHH-HHHHhhhHhHHHHHHHHHH-HhC-chHHHHHHHHHH
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVW-NAHTSVGNISGSLLAASVL-DYG-WGWSFILPGASI 240 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~l~-~~g-wr~~f~~~~~~~ 240 (538)
+...+++.|.+|+++|++++++. .....+|..++|.+++++. +.| |+..++...+..
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 99999999999999999999984 5666788999999999988 456 888877765543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=105.36 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=126.4
Q ss_pred HHHHHHHhhhcccCCcCCCcch-hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHH
Q 009268 334 LYWLPFYLSQTEIGGEYLSVKT-AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTV 412 (538)
Q Consensus 334 ~~~~~~~l~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (538)
..+...++.+. +|++..+ .|.+...+..+..+..+..|+++||+|.|+.+..+.+...+..+++.+. .+...
T Consensus 45 ~s~a~p~L~~e----lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~ 117 (511)
T TIGR00806 45 ESFITPYLLTV----LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWH 117 (511)
T ss_pred HHHHHHHHHHH----cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33444455555 6999999 9999999999999999999999999999999998888888777776652 46777
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCch---HHHHHH
Q 009268 413 NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWD---AVFIML 489 (538)
Q Consensus 413 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~---~~~~~~ 489 (538)
+.++-+++|++.+..+ ....++..-+|+ ++|+++.|+.+....+|.++++++.+.+...+|+ ...++.
T Consensus 118 L~i~R~llGvaEA~~~-A~~syI~~WfP~--------kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Is 188 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI-AYSSYIFSLVPP--------SRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIIS 188 (511)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 7888899999999988 888888888886 8999999999999999999999999986544544 445555
Q ss_pred HHHHHHHHHHHHHHhh
Q 009268 490 MVGALIAGLLLSRLVI 505 (538)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (538)
.+...++.++.+++.+
T Consensus 189 l~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 189 LVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555666666666543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-10 Score=108.61 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=126.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
|.++...+..+......+.+....+.+-++. +|++..+.+++.++..++..+.++..|++.||+|.|+.+.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~----~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIG----FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3455555555555555555555455554534 699999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhc--cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhH
Q 009268 394 AAIPSMLLYRTY--GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGP 471 (538)
Q Consensus 394 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 471 (538)
..+..+...... ..++.+..++.-++.|++ +..++.....+.+.+|+ +++|++.|+....+++|..+++
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~--------~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK--------AKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH--------hHhHHHHHHHHHHHhhHHHHHH
Confidence 777666554321 124677777788888887 66788888888888875 8899999999777777777666
Q ss_pred HHHHHhh-----c-------------c-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 472 LLTGFLS-----T-------------Q-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 472 ~~~g~l~-----~-------------~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
.+...+. + . +++.++++...+.++..++.++.
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554433 1 1 36666666666666655555554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=107.75 Aligned_cols=190 Identities=16% Similarity=0.166 Sum_probs=151.5
Q ss_pred hhhhccCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHH
Q 009268 308 FQACLIPG-VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARA 385 (538)
Q Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 385 (538)
++.+++|+ ++.+...-+.--+++|++-..+..|+......++|++.+++.-++..+....-...+++||++||+ |+|+
T Consensus 14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 44556555 566667778888999999999999999884322449999988888887777777889999999996 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH
Q 009268 386 TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465 (538)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 465 (538)
.+.++.++.+++-+++.... ..+.....+.+.+++++.+..=+...+.+.+.+++.+ .| |-..+++..+..++
T Consensus 94 tI~lGail~~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D-----pr-rD~gFt~fY~~iNi 166 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD-----PR-RDGGFTLFYMGINI 166 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC-----cc-cCCCccEEEEEeeh
Confidence 99999999998887776521 1234556677777788888988889999999888744 12 55668999999999
Q ss_pred HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 466 GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 466 g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
|+.++|.+.+++.+. +|...|...++-+.++.+.++...
T Consensus 167 Gsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 167 GSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999998 999999998888888777666543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-10 Score=93.25 Aligned_cols=134 Identities=20% Similarity=0.305 Sum_probs=107.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhh
Q 009268 359 LSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSAD 438 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 438 (538)
..+...++.+++.++.|++.||++||+.+..+.....+..+.... ..+.+...+..++.|++.+...+.......+.
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL---SSNITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455677888999999999999999999988777766665554433 24566666777888888888888888888888
Q ss_pred cCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 439 LGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 439 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
.++ +.++++.++.+....+|..++|.+.+.+.+. +|+..+++.+.+.+++.+...+.
T Consensus 80 ~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 80 YPP--------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred CCh--------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 875 7889999999999999999999999999888 89888888777776665555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=108.06 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hHHH-HHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-----KARA-TTAATFMY 393 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~-~~~~~~~~ 393 (538)
...++..+........-+|.|+++. |++.++.|++...... .+..++.|+++||+ |||| .+..+...
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~ 77 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-----GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVG 77 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHH
Confidence 3455666677777788899999998 9999999998666554 57889999999999 7776 45555555
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 394 AAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
.+++...+.......+.+...+..++.+++.....+...+.+.+.+++ ++|+++.++......+|..+++.+
T Consensus 78 ~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~--------~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 78 LAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP--------EERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------hhhhHHHHHHHHHHHHHHHHHhHH
Confidence 555555444332223455555555666777777777888888888775 779999999999889999999999
Q ss_pred HHHhhcc--CchHHHHHHHHHHHHHHH
Q 009268 474 TGFLSTQ--GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 474 ~g~l~~~--g~~~~~~~~~~~~~~~~~ 498 (538)
.+.+.+. +|+..|++.+++.++..+
T Consensus 150 ~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 150 ALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 9998884 899999988877665444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=103.33 Aligned_cols=172 Identities=19% Similarity=0.217 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSM 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 399 (538)
....+..++..+....-+...+.+. +|+|+.|.+++.+...+.+.+.++..|.+.||+|.|+......++..+..+
T Consensus 19 S~~af~v~F~VW~l~s~l~~~i~~~----~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~ 94 (417)
T COG2223 19 STLAFDVGFMVWTLFSPLGVFIKSD----FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCL 94 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc----cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHH
Confidence 3333333344444444444444455 699999999999999999999999999999999999999999999999888
Q ss_pred HHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 400 LLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
.+.......+.+..+++-++.|++ ++.+......++..+|+ +.+|.+.|+.. .+++|..+...+...+..
T Consensus 95 ~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~--------~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 95 GLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPK--------EKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCCh--------hhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 887766555666666666777765 45567777788888886 88999999999 999999999999988888
Q ss_pred c-C---chHHHHHHHHHHHHHHHHHHHHhh
Q 009268 480 Q-G---WDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 480 ~-g---~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
. + |+.+..+.....++..+..++..+
T Consensus 165 ~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 165 AFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 7 888888887777777766666544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-11 Score=113.17 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=130.9
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
++.+....|++.+.+.+..++.++++|++.||+.|++++.++..+..++.+.-.+. ...|...++=.+.|++.+...
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs---~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS---NHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhhhc
Confidence 58999999999999999999999999999999999999999888887766665442 567777778889999999999
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
+..++.+++.++. +.|++++++.++...+|+.+|-..++.+.+. .|+++|...+++.++++++..++.+.
T Consensus 140 ~ia~s~IaD~f~~--------~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 140 PIAPSLIADSFPD--------DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccchhHhhhcCcc--------hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999986 8899999999999999999999888888887 59999999999999888887776654
Q ss_pred hh
Q 009268 507 EI 508 (538)
Q Consensus 507 ~~ 508 (538)
..
T Consensus 212 P~ 213 (493)
T KOG1330|consen 212 PE 213 (493)
T ss_pred cc
Confidence 33
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=115.93 Aligned_cols=147 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
++++..+.|.+.+.+.++.++++++.|++.||+|+|+.+..+.++..+..++..... ..+.+..++.-++.|++.+..+
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-GGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHhcccch
Confidence 689999999999999999999999999999999999998888777666555543211 1234556667788899999999
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHh
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLV 504 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 504 (538)
+....++.+.+++ +.|+++.|+.+....+|..+++.+.+.+.+. +|+..|++.+++.++..++.+...
T Consensus 150 ~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 150 PATHKIIVKWAPP--------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred hhHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 9999999998886 8899999999999999999999999998876 899999988887766555554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-09 Score=105.39 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAA 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~ 395 (538)
+..+.+..+...+.........|.+ ++. +|.+..+.++..+.+.++..+++++.|++.||+|+|+.+..+..+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~----~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~ 102 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQA----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3445566666677777777788887 555 59999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 396 IPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
++.++.......++.+...+..++.|++.+...+.....+.+. ++ .+.++...++.+....+|..+++.+.+
T Consensus 103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~-------~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GP-------ESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CC-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776543222245677777788888999888888888877754 43 244555688889999999999998876
Q ss_pred Hhh
Q 009268 476 FLS 478 (538)
Q Consensus 476 ~l~ 478 (538)
.+.
T Consensus 175 ~l~ 177 (438)
T PRK10133 175 SLI 177 (438)
T ss_pred HHH
Confidence 543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-09 Score=107.53 Aligned_cols=178 Identities=12% Similarity=0.012 Sum_probs=133.8
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hH
Q 009268 309 QACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-----KA 383 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~ 383 (538)
+..++|+.+.+....+..+.........+|.++.+. |.+..+.+..... .... ++.++.|.++||+ ||
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-----g~~~~~ig~~~~~-~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-----NIDLKTIGFFSLV-GQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH-HHHH-HHHHHHHHHHHcccccCCCC
Confidence 344566677777777888888888888999999997 9999998886332 2332 5789999999999 98
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH
Q 009268 384 RATTA-ATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT 462 (538)
Q Consensus 384 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 462 (538)
|+..+ .+.+..+++...+....+..+.+...+..++.+++.+...+...++..+.+++ ++|+++.++....
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~--------~~rg~~~~i~~~g 151 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA--------EERGAGAAISVLG 151 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------hhhHHHHHHHHHH
Confidence 88644 44444444444443333334566666667777888777777788888888875 7799999999999
Q ss_pred hHHHHHHhHHHHHHhhc-c-CchHHHHHHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLST-Q-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~-~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
..+|..+++.+.+.+.+ . ||+..|++.+++.++..+..+
T Consensus 152 ~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 152 YRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 4 999999998877766544433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-08 Score=96.86 Aligned_cols=337 Identities=11% Similarity=0.026 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcc----ccccc------hhHHHHHHHHHHHHhhhccC-c
Q 009268 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMG----YFLDI------HAFGFYLIMQMVAGLFQATG-W 183 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a----~~~~~------~~~~~l~~~r~l~G~~~g~~-~ 183 (538)
.-.+...+.++..|.+.||..|.+++..+.+..-++..+++.. ..... .....+++.-.+.|.-.-.. .
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566778888999999999998887766543333332221 00000 11222233333333222221 2
Q ss_pred hhhhhhhhccc------ccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHhhhcc---
Q 009268 184 PSVVAVIGNWF------GKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVMGGIIVYLFLAA--- 253 (538)
Q Consensus 184 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~--- 253 (538)
....++-.||. +++.+.+.++...-.--+.-+++|++.|.+.. .+.+....+.++..++...+=++++..
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~ 205 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN 205 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345663 23456777777777778899999999999885 788888888777777765544444322
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHH
Q 009268 254 -YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYT 332 (538)
Q Consensus 254 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
.|.-..++..+++...+..+ ...+... ........ .+.-+.....++..+++|.+.......++ ++.--+
T Consensus 206 ~~P~L~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~----~~~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLs 276 (432)
T PF06963_consen 206 SVPALAVKKRSSESESSSDEE-SSSESSS---DPSILKRL----WNPLRTIIRGWRTYFRQPVFLASFALALL-YFTVLS 276 (432)
T ss_pred hChHhcCCCCCcccccccccc-ccccccc---hhhHHHHH----HHHHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhc
Confidence 23211111111100000000 0000000 00000000 00011223456677777765544333333 333445
Q ss_pred HHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHhhccCch-
Q 009268 333 FLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSML--LYRTYGSVS- 409 (538)
Q Consensus 333 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 409 (538)
+...+..|+... |+++...|..-+...+.++.+.++..++.+|+|..+.-..+......+..+ ..++.+..+
T Consensus 277 f~~lmt~yl~~~-----G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~ 351 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-----GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF 351 (432)
T ss_pred CcHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 677788899998 999999999999999999999999999999999888766555543322221 122222211
Q ss_pred ----HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 410 ----QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 410 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
...++....+-=++.-+.--....++++.+|+ ++||+..|+.+...++...+.-.+
T Consensus 352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~--------~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE--------SERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH--------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11222222233334444555667777787876 889999999999998887776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=121.71 Aligned_cols=177 Identities=13% Similarity=0.104 Sum_probs=122.8
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH----hhhcccCCcCC-CcchhhhhhhhhhhhhhhHHHHHHHHHHHHh
Q 009268 308 FQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFY----LSQTEIGGEYL-SVKTAGNLSTLFDVGGIFGGIIAGYISDKLK 382 (538)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 382 (538)
..++++++++.+.+..++..+..+.....++.+ +... .+. +....++..+++.+..++.+++.|+++||++
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~ 80 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGA----LGAYNNALVTLAGAVFILPFFIFSALAGQLADKYD 80 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhcc
Confidence 346777888777777777666544332222211 2111 111 2245677778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhH
Q 009268 383 ARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGT 462 (538)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 462 (538)
||+++........+...+........+.+.++++.++.|++.+...+...+++.+.+++ +.++.++|+.++.
T Consensus 81 rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~--------~~~~~a~~~~~~~ 152 (1140)
T PRK06814 81 KAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK--------DELLGANALVEAG 152 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc--------cccchhhHHHHHH
Confidence 99975432222111111111111125677888888999999998999999999999986 7889999999999
Q ss_pred hHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIA 496 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~ 496 (538)
..+|..+||.++|++.+. +|+..|...+++.+++
T Consensus 153 ~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~ 187 (1140)
T PRK06814 153 TFIAILLGTIIGGLATISGNFVILVALLMGIAVLG 187 (1140)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999888 8888874444444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-10 Score=99.06 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhh
Q 009268 32 RYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGE 111 (538)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~ 111 (538)
||..+........... ....++..-|.+++. +|+| .+|...
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~-------------------------------l~~s-------q~~l~~ 41 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSR-------------------------------LGYS-------QSQLNT 41 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHH-------------------------------hCCC-------HHHHHH
Confidence 5766555554443333 456667777777766 7888 899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccc--hhHHHHHHHHHHHHhhhccCchhhhhh
Q 009268 112 IDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDI--HAFGFYLIMQMVAGLFQATGWPSVVAV 189 (538)
Q Consensus 112 ~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~ 189 (538)
+.+...+|..+ +++.|.+.|++|++.++.+|.+...++..+...+..... .++|.+.+..++.|.+.+....++...
T Consensus 42 l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt 120 (250)
T PF06813_consen 42 LSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVT 120 (250)
T ss_pred HHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHH
Confidence 99999999987 488999999999999999999999999988877543332 478899999999988887777777777
Q ss_pred hhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009268 190 IGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPE 256 (538)
Q Consensus 190 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 256 (538)
..+.|| ++||.+.|+.-...++++.+-..+...+..-+-...++..+....+.+++...+++..|+
T Consensus 121 ~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 121 CVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred HHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence 778898 589999999999999998876655554443233344444555555555555555655443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=110.80 Aligned_cols=138 Identities=16% Similarity=0.112 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhH--HHHHHHHHHHHhhhccCchhhhh
Q 009268 111 EIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAF--GFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 111 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
+......+....+.++.+++.||+|||+.+.++.++.+++.++..+. ++. +...+.-++.+++.+..++..+.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-----PVDLYFLRTALAVLGKFGITSAFQMVYL 433 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888999999999999999999999988888877775 332 44555566677777777888899
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
+.+|.+|.+.|+.++|+......+|.+++|.+.+ +.+.++..++++.++..++.+++ .+++||+.
T Consensus 434 ~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~ 498 (505)
T TIGR00898 434 YTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETK 498 (505)
T ss_pred HhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCC
Confidence 9999999999999999999999999999999988 66677788888888877776444 45667654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=104.35 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=129.6
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
.+-+..+.|++++..++.+++.+++.|.+.||+|+|..++++..++....+++.+ ..+.+..++.=.+-|++.+...
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---g~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---GNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---cchhHHHHHHHHHhhhhHHHHH
Confidence 3556778999999999999999999999999999999999999999888887766 3566666777778888888888
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
....+++++.++. ...|++++|+...+..+|-.+||+++|.++|. |++..|.++++++++-..+-++...+
T Consensus 178 tsglamlAd~f~~-------d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 178 TSGLAMLADVFPE-------DNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhhHHHHHHHccc-------chhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 8888999999886 46689999999999999999999999999999 99999999999999888777766544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=107.59 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=110.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++ ++.+.+++..++.|++.+...+.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----TALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999998888888887 89999999999999999988888
Q ss_pred hhhhhhcccccCccchhhHHHH-HHHhhhHhHHHHHHHHHHH-hCchHHHHHHHHHHHH
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWN-AHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVM 242 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~~~~~ 242 (538)
...++.+. +++++++..+... ....+|..+||.++|.+.+ +|+ ..|+..+++.++
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 88888886 5567788888886 5567788999999999984 576 466666665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-09 Score=105.81 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc---hHHHHHHHHHHHHHhhccc
Q 009268 351 LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV---SQTVNIVLMMVAGLFVNGP 427 (538)
Q Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~ 427 (538)
.+..+.+++.+...++.+++.++.|+++||+|||+.+..+.++..++.++........ +.+..++.-++.|++.+..
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence 4555678899999999999999999999999999998887777776655544321111 1456677778899999999
Q ss_pred hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc------------------------cCch
Q 009268 428 YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST------------------------QGWD 483 (538)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~------------------------~g~~ 483 (538)
++....++.+.+|+ +.||++.++.+....+|..+++.+...+.. .+|+
T Consensus 133 ~~~~~~~~~e~~p~--------~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 133 YPLSAIITSEFATK--------KWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred hHHHHHHHHHhcCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 99999999999986 889999999999999999999887665421 2699
Q ss_pred HHHHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAGLL 499 (538)
Q Consensus 484 ~~~~~~~~~~~~~~~~ 499 (538)
..+.+.++..++..+.
T Consensus 205 ~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 205 ILIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887666555544333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=104.00 Aligned_cols=162 Identities=17% Similarity=0.061 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc--
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYG-- 406 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (538)
..|.+..+.|.. ++. +|++..+.+.+.+.... .....++.|++.||+|+|+.+.++.++..++.++......
T Consensus 42 ~~y~fsv~s~~L-~~~----lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~ 115 (591)
T PTZ00207 42 FMYAFNLISGAM-QAR----YNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV 115 (591)
T ss_pred HHHHHHHHHHHH-HHH----hCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556666655 444 59999999888776333 3345667899999999999999999888888777655321
Q ss_pred -CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHH
Q 009268 407 -SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAV 485 (538)
Q Consensus 407 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~ 485 (538)
..+.+.+.+..++.|++.+..++.....+.+.+| +.||.+.|+......+|+++.+.+...+...+++..
T Consensus 116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp---------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~ 186 (591)
T PTZ00207 116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP---------SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAY 186 (591)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1356666777778888877777777777777664 678999999999999999865555444444467777
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 009268 486 FIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~ 505 (538)
|++.+++.++..++...+.+
T Consensus 187 fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 187 FFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 88877777776666655544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=119.22 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=120.7
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCC--cchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHH
Q 009268 309 QACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLS--VKTAGNLSTLFDVGGIFGGIIAGYISDKLKARAT 386 (538)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 386 (538)
..++++.++.+.++.++..+........+..++... ++.+ ....+++.+++.++.++++++.|+++||+|||++
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~ 79 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKA----YDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRV 79 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH----cCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHH
Confidence 456777788777777777666655555555455443 3443 3346778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH
Q 009268 387 TAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG 466 (538)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (538)
+..+..+.++..++........+.+..++..++.|++.+...+....++.+.+++ +.|+.++|+......+|
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~ig 151 (1146)
T PRK08633 80 IRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK--------ENLSRANGLLEAFTIVA 151 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc--------ccchhhhhHHHHHHHHH
Confidence 8877665444443333222224566777778888999888888888999998886 78999999999999999
Q ss_pred HHHhHHHHHHhhcc
Q 009268 467 AALGPLLTGFLSTQ 480 (538)
Q Consensus 467 ~~i~~~~~g~l~~~ 480 (538)
.++|+.+++++.+.
T Consensus 152 ~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 152 ILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=104.76 Aligned_cols=179 Identities=14% Similarity=0.058 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH----HHhHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD----KLKARATTAATFM 392 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~~~~~~~ 392 (538)
..++...+..++.+.....+++.|+++. |.+....+.+..+..+.+++..++.|+++| |+|||+.++....
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl~~l-----g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYVQEL-----GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 3445556666777777888888898776 999999999999999999999999999999 5999999887655
Q ss_pred HHHHHHHHHHhhccC-----------ch-H---HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHH
Q 009268 393 YAAIPSMLLYRTYGS-----------VS-Q---TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTA 457 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~-----------~~-~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 457 (538)
+..+..+.+...... .+ . +..++...+..++.+...++..+++.+.+++++ |.++.+.+
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~------~~~~~a~~ 155 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA------RRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh------HHHHHHHH
Confidence 444433333322111 00 0 222333344555667777788888888887622 34478899
Q ss_pred HHHhHhHHHHHHhHHHHHHhh--c----------c----CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 458 IIDGTGSVGAALGPLLTGFLS--T----------Q----GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 458 ~~~~~~~~g~~i~~~~~g~l~--~----------~----g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
+.+.+..+|+.+++.+.+... + . +++..|++.+++.+++.++.++..++
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 999999999999999887641 1 0 56778888888777777776665443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-09 Score=99.72 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=178.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhh----cCChhhHHH-HHHHHHHHHHHHhccccc------c------chhHHHH
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDT----LDLRLFLTT-GMVGSGIFVGLFGMGYFL------D------IHAFGFY 168 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l~~-~~~~~~i~~~~~~~a~~~------~------~~~~~~l 168 (538)
....+.+--...+...+.+|+.|..+|| +||||.++. +.+..+++.++.+++... + ......+
T Consensus 66 hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~ 145 (498)
T KOG0637|consen 66 HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLF 145 (498)
T ss_pred cccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHH
Confidence 5556666666777778889999999995 898886555 556667777777776110 0 0112334
Q ss_pred HHHHHHHHhhhccCchhhhhhhhcccccCccch-hhHHHHHHHhhhHhHHHHHHHHHHHhCchH--HHHHHHHHHHHHHH
Q 009268 169 LIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGL-IMGVWNAHTSVGNISGSLLAASVLDYGWGW--SFILPGASIVMGGI 245 (538)
Q Consensus 169 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~--~f~~~~~~~~~~~~ 245 (538)
++.-.+.=++.-.....+.+++.|....+++.+ +++.+.....+|..+|..++.+. +|+- .|......-+.+..
T Consensus 146 ~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~---~~~~~~~Ft~~~~~~~~C~~ 222 (498)
T KOG0637|consen 146 ILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL---GLYKIFPFTLTTACDLYCAN 222 (498)
T ss_pred HHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc---CceEEeehHHHHHHHHHHHH
Confidence 444444555666778889999999997766666 99999999999999998888743 3332 22222222222111
Q ss_pred HHHhhhc-------cCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhc-cCchH
Q 009268 246 IVYLFLA-------AYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL-IPGVI 317 (538)
Q Consensus 246 ~~~~~~~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 317 (538)
+-..+.. ++-... ....+++.... ....+....+.+.. .+..-.+.+ .|..+
T Consensus 223 ~~~~~~~~v~L~~i~~~~~l-~~~~~~~~s~~-----~~~~~~~~~~~~~~--------------~e~fG~~~~mpr~m~ 282 (498)
T KOG0637|consen 223 LKLCFFLEVTLLLIETSESL-WYPQEKPLSPK-----GTTARSKSSKLPFL--------------LEIFGALKVMPRPMR 282 (498)
T ss_pred HHHHHHHhhhhhheeccccc-ccccccCCCCC-----cccccccccCcchH--------------HHHhchHhhCChhHH
Confidence 1111111 111110 00000000000 00000000000000 000011222 24467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch----------------hhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT----------------AGNLSTLFDVGGIFGGIIAGYISDKL 381 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~----------------~g~~~~~~~~~~~~~~~~~g~l~dr~ 381 (538)
.+++...+.+++.+.+..+...++-+.- |+-++.. -.+=+.++.+...+.+....++.+|+
T Consensus 283 ~L~i~~lltW~a~f~f~LF~TDfmG~~v---y~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~ 359 (498)
T KOG0637|consen 283 MLLIVTLLTWIAWFPFLLFDTDFMGREV---YGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKF 359 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHh---hCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888888888888887776542 2222211 11223455566667788888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHH----hhcC-------CCccc---cc
Q 009268 382 KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVS----ADLG-------THSSV---RG 447 (538)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~-------~~~~~---~~ 447 (538)
|.|+....+.....++..+... ..+.+.........|+..+......+..+. ...+ |.... .+
T Consensus 360 g~r~~y~~~~~~f~~~~~~~gl---~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~ 436 (498)
T KOG0637|consen 360 GTRKRYWGGVNAFGLATGLAGL---VLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIG 436 (498)
T ss_pred CcceEEeehhHHHHHHHHHHhh---hhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccccccccccccccccc
Confidence 8554433332211111111111 012222222222333222222111111111 1100 00000 00
Q ss_pred -ccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 448 -DSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 448 -~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
....+|...|+.|..-.+..++.....|.+.+.
T Consensus 437 ~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~ 470 (498)
T KOG0637|consen 437 NSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQL 470 (498)
T ss_pred CccCCCCceeeeeeeeeeehhheeeccccchhhh
Confidence 123457888899998899999988888888877
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=104.73 Aligned_cols=174 Identities=21% Similarity=0.186 Sum_probs=114.3
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Q 009268 311 CLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAAT 390 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~ 390 (538)
.|++.+|......++..+.......+.|.++++. .|++..++|.+++...+..++.+++.|.+.||++.||.++..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~----~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQV----AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccc----cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 4667788888899998889888999999999985 499999999999999999999999999999999977665444
Q ss_pred HHHHHH--HHHHHHhhcc--CchHHH-HHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH
Q 009268 391 FMYAAI--PSMLLYRTYG--SVSQTV-NIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465 (538)
Q Consensus 391 ~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 465 (538)
..+..+ +.+..+.+.+ ..+.+. .++..+.++++.....+..-+++.+. .+..+.-+|=..+.+++
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~----------sr~~~feYG~~R~wGSi 149 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV----------SRRNGFEYGRARMWGSI 149 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH----------HHHHSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH----------HHHhcCCcchHHHHhhH
Confidence 333222 2222222111 112211 11112223444444444444443222 14455567778889999
Q ss_pred HHHHhHHHHHHhhccCchHHHHHHHHHHHHHHH
Q 009268 466 GAALGPLLTGFLSTQGWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 466 g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~ 498 (538)
|.+++..++|.+.+.+....|++..+..++..+
T Consensus 150 g~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~l 182 (412)
T PF01306_consen 150 GFAIASLLAGILFNINPNIIFWIASAAAIILLL 182 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeeCccHHHHHHHHHHHHHHH
Confidence 999999999999988677778866555444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=103.42 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=101.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. .++.+.+++..++.|++.+...+.
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~ 331 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA----GSNLPLILVLIILAGFGQNFVTGL 331 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999999999999999999998888887777664 146677788888899999988899
Q ss_pred hhhhhhcccc-------cCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hCc
Q 009268 186 VVAVIGNWFG-------KRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGW 229 (538)
Q Consensus 186 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~gw 229 (538)
..++++|..+ ++++|.++|+.+....+|..+|+.+.+.+.+ .||
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 332 VWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999998865 4567999999999999999999999988873 455
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-06 Score=83.85 Aligned_cols=260 Identities=12% Similarity=0.044 Sum_probs=160.8
Q ss_pred ccchhhHHHHHHHHHHHH-HhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchh--------------------
Q 009268 106 TSKLGEIDLAFLACYSVG-MFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHA-------------------- 164 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~-------------------- 164 (538)
...+.++-+...+...+. .++.+++++|++|++++-.....+.+..+++++...+..+.
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 467889988888877776 89999999999999998888777777777766653322121
Q ss_pred ------HHHHHHHHHHHHhhhccCch-hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh---------C
Q 009268 165 ------FGFYLIMQMVAGLFQATGWP-SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY---------G 228 (538)
Q Consensus 165 ------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~---------g 228 (538)
.|...+.-+...+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.+. .
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~ 201 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDG 201 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCh
Confidence 34444445555555555554 7788999999999999999999999999999999888877621 2
Q ss_pred ch----HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccc
Q 009268 229 WG----WSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTS 304 (538)
Q Consensus 229 wr----~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (538)
|. ..+.+.++..++ .+.....+.+.........+.++ + +.++ +.+....
T Consensus 202 ~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~--~-------------~~k~-----------k~k~~~~ 254 (472)
T TIGR00769 202 WHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPRSYNPAL--K-------------EKKV-----------KPKMSTM 254 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccccchhh--c-------------cccC-----------CCCCCHH
Confidence 42 223333333333 23344444332211000000000 0 0000 0112234
Q ss_pred cchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch----hhhhhhhhhhhhhhHHHHHHHHHHH
Q 009268 305 VGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT----AGNLSTLFDVGGIFGGIIAGYISDK 380 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~----~g~~~~~~~~~~~~~~~~~g~l~dr 380 (538)
.+.+.++++|-++.+++...+.+.....+..-.-..+.+. + -++.+ .|.+....++..++..++.+++.+|
T Consensus 255 es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~----~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~ 329 (472)
T TIGR00769 255 ESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ----Y-PSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK 329 (472)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999887777777776666655554444444544 2 22222 2334445566666667777999999
Q ss_pred HhHHHHHHHHHHHHHHH
Q 009268 381 LKARATTAATFMYAAIP 397 (538)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (538)
+|-+....+..++..+.
T Consensus 330 ~Gw~~~a~i~Pii~lit 346 (472)
T TIGR00769 330 YGWLTAALITPLVMLLT 346 (472)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99987777666665553
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-08 Score=99.66 Aligned_cols=131 Identities=19% Similarity=0.158 Sum_probs=95.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc-----hHHHHHHHHHHHHHhhccchhhH
Q 009268 357 GNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV-----SQTVNIVLMMVAGLFVNGPYALI 431 (538)
Q Consensus 357 g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~ 431 (538)
+.+++...++..+++++.|+++||+|||+.+..+..+..+..++........ +....+++-++.|++.++.++..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 3344555566669999999999999999999988888877766654421111 12245556678899999999999
Q ss_pred HHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh---------ccCchHHHHHHHHHHHH
Q 009268 432 TTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS---------TQGWDAVFIMLMVGALI 495 (538)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---------~~g~~~~~~~~~~~~~~ 495 (538)
..++.|..|+ ++||.+.++.......|..+++.+...+. +.||+..|++.++..++
T Consensus 146 ~~~i~e~~p~--------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 146 ATYMSEVAVE--------GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHhCCC--------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 9999998886 77888888887777777777776554433 23999999876665544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=105.34 Aligned_cols=123 Identities=10% Similarity=-0.007 Sum_probs=88.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHH-HHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVG-LFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~-~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+ ..... ...+++..+.+..++.|++.+...+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~ 350 (434)
T PRK15075 273 AADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL--VAAPSFARMLAVELWLSFLYGSYNG 350 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHh
Confidence 77788888899999999999999999999999988776554433221 11110 0014444455555666777766666
Q ss_pred hhhhhhhcccccCccchhhHHHHHHH-hhhHhHHHHHHHHHH-HhCch
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHT-SVGNISGSLLAASVL-DYGWG 230 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~ig~~l~~~l~-~~gwr 230 (538)
....++.|.+|+++|+.++++..... .++..++|.+.+++. +.|++
T Consensus 351 ~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 351 AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 67788999999999999999865444 445778999988887 45654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-08 Score=98.95 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCc-CCCcchhhhhh-----hhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 321 FCLFFAKLVAYTFLYWLPFYLSQTEIGGE-YLSVKTAGNLS-----TLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-g~~~~~~g~~~-----~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
+..++-.+-...+....|.+..+.+ + +.++. .+.+. +...++..+++++.|+++||+|||+.+..+..+.
T Consensus 29 ~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~ 104 (438)
T PRK09952 29 AGAVVDWYDFLLYGITAALVFNREF---FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3334433333334444455555431 1 45554 34332 2344556788899999999999999999888877
Q ss_pred HHHHHHHHhhccCchHH--------HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH
Q 009268 395 AIPSMLLYRTYGSVSQT--------VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG 466 (538)
Q Consensus 395 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (538)
.++.++.... ++.. ..++.-++.|++.++.++....++.|..|+ +.|+...+..+....+|
T Consensus 105 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~--------~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 105 GIATALIGLL---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK--------NKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC--------CCCcHHHHHHHHHHHHH
Confidence 7766665542 2222 344556678999999888888898888886 77888888888888888
Q ss_pred HHHhHHHHHHhh---------ccCchHHHHHHHHHHH
Q 009268 467 AALGPLLTGFLS---------TQGWDAVFIMLMVGAL 494 (538)
Q Consensus 467 ~~i~~~~~g~l~---------~~g~~~~~~~~~~~~~ 494 (538)
..+++.+.+.+. +.+|+..|++.++..+
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 888877666543 2389999987665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=104.36 Aligned_cols=151 Identities=16% Similarity=0.234 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCCh--hhHHHHHHHHHHHHHHHhcc---ccccchhHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLR--LFLTTGMVGSGIFVGLFGMG---YFLDIHAFGFYL 169 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr--~~l~~~~~~~~i~~~~~~~a---~~~~~~~~~~l~ 169 (538)
+|++ ..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+. .....++-+.+.
T Consensus 312 lg~s-------~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 312 LGMS-------TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred cCcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 7888 88888889999999999999999999999999 88888888775555544440 000127888999
Q ss_pred HHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-h-CchHHHHHHHHHHHHHHHHH
Q 009268 170 IMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-Y-GWGWSFILPGASIVMGGIIV 247 (538)
Q Consensus 170 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~-gwr~~f~~~~~~~~~~~~~~ 247 (538)
+.-++.|+..|...+...++.++..|+++.+..+|++....-....+||++-+.+.+ . +-|+.+....++.++. +++
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~g-l~l 463 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIG-LIL 463 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999998884 3 4888888877766664 444
Q ss_pred Hhhhcc
Q 009268 248 YLFLAA 253 (538)
Q Consensus 248 ~~~~~~ 253 (538)
++.++.
T Consensus 464 l~~v~~ 469 (477)
T PF11700_consen 464 LFFVDV 469 (477)
T ss_pred Hhhccc
Confidence 455543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=100.23 Aligned_cols=155 Identities=17% Similarity=0.091 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hHHHHHH-HHHHHHHHHHHHHHhhc
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-----KARATTA-ATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~~~-~~~~~~~~~~~~~~~~~ 405 (538)
.....+|.++++. |+|..+.|+.... .+...+ .++.|+++||+ ||||.++ .+....++....+.+..
T Consensus 6 ~~~~~~~~~~~~~-----g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~ 78 (356)
T TIGR00901 6 LVGNTLPYWLRSK-----NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV 78 (356)
T ss_pred hHHhHHHHHHHHc-----CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455678888876 9999999998655 344444 88999999998 7888754 44444444433443322
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-C---
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-G--- 481 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g--- 481 (538)
+..+.+......++.+++.....+...+++.+.+++ ++|+.+.|+......+|..+++.+.+.+.+. +
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~ 150 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD--------EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT 150 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 223444455555566666666677778888888875 8899999999999999999999999988877 6
Q ss_pred -----chHHHHHHHHHHHHHHHHHH
Q 009268 482 -----WDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 482 -----~~~~~~~~~~~~~~~~~~~~ 501 (538)
|+..|++.+++.++..+..+
T Consensus 151 ~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 151 GLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999888877666444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=102.03 Aligned_cols=146 Identities=17% Similarity=0.152 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
.....+|.+.++. |++..+.+++.+...++..++.++.|++.||+|+|+.+..+.....++.+.. . .++.+
T Consensus 18 ~~~~~lp~l~~~~-----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~~~~~ 88 (355)
T TIGR00896 18 SVGPLLPQIRSAL-----GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---APGTA 88 (355)
T ss_pred cCcccHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---hccHH
Confidence 3455677777765 9999999999999999999999999999999999999888776655544433 2 24455
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---CchHHHHH
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GWDAVFIM 488 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~~~~~~~ 488 (538)
..++..++.|++.+...+.....+.+..+ ++++++.|+.+....+|..+++.+.+.+.+. +|+..|..
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~ 159 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP---------QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW 159 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55566667777766655555555554443 5689999999999999999999999888776 38888776
Q ss_pred HHHHHHH
Q 009268 489 LMVGALI 495 (538)
Q Consensus 489 ~~~~~~~ 495 (538)
.+++.++
T Consensus 160 ~~~~~~~ 166 (355)
T TIGR00896 160 WALPALL 166 (355)
T ss_pred HHHHHHH
Confidence 6554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-09 Score=98.49 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMV 174 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l 174 (538)
+|++ .++.++..+.+..+..++.++.+++.||+|+||++.++.++..++.++.... ++... ...-++
T Consensus 173 ~g~s-------~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~~~~~-~~~~~l 239 (310)
T TIGR01272 173 LGLP-------EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----HGYVA-MWFVLA 239 (310)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----CCHHH-HHHHHH
Confidence 5677 8899999999999999999999999999999999988888887777666554 33332 235557
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hCchHHHHHHHH
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YGWGWSFILPGA 238 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~gwr~~f~~~~~ 238 (538)
.|++.+..+|...+...+.+|+ +.+.+.++. ....+|..++|++.|.+.+ .|.+..|++..+
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999999988875 456667775 5667899999998888874 788888885443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=101.71 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=124.0
Q ss_pred hccCchHHHHHHHHHHHHHH----HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHH
Q 009268 311 CLIPGVIPFAFCLFFAKLVA----YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARAT 386 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 386 (538)
+++|+++.......+..... ......++....+. |-+ ....++.+...++..++.++.|+++|.+|||..
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~di-----G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~ 110 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADI-----GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF 110 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-----CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Confidence 45566555443333332222 22234455555555 654 455667777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH
Q 009268 387 TAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG 466 (538)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 466 (538)
++.+.++..++.++... ..+....+....+.|++.+.. ......++|.+|. +.|+...++.....-..
T Consensus 111 ~i~g~~l~vvG~Iv~at---A~~~~~~iag~~l~GvgaG~~-~~~~~~isEl~p~--------k~R~~~~~~~~~~~i~~ 178 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCAT---AQNMNTFIAGMVLYGVGAGVQ-ELAALAISELVPN--------KWRGLGLAIASIPFIIT 178 (599)
T ss_pred HHHHHHHHHhHHHHhhc---CCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhccc--------chhhhHhHHHHHHHHhh
Confidence 99999988888777654 456677777888888875444 3455567788775 77777777666555455
Q ss_pred HHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009268 467 AALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVIAEI 508 (538)
Q Consensus 467 ~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (538)
..+++.+...+... +|++.|++.+++..++.++..+++++..
T Consensus 179 ~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 179 TWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred hcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55677776666555 9999999998888887777666665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=100.95 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhc-cccccchhHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFL-ACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGM-GYFLDIHAFGFYLIMQ 172 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~-l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~-a~~~~~~~~~~l~~~r 172 (538)
.|++ .++.|++..... ....++.+++|++.||+|+|+.+..+.++.++..+.... .......+.+.+....
T Consensus 238 ~G~s-------~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 238 AGWP-------LEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred cCCC-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 5777 889999888776 466677899999999999999988877665333322221 1000013344445555
Q ss_pred HHHHhhhccCchhhhhhhhccccc-CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHH
Q 009268 173 MVAGLFQATGWPSVVAVIGNWFGK-RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMG 243 (538)
Q Consensus 173 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~ 243 (538)
.+.+++.+...+...+.+.+..++ +++++.+++.++..++|..+||.++|.+. ..||+..|++.+++.++.
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 666777777777778887777766 78999999999999999999999999998 479999999877766554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-08 Score=91.59 Aligned_cols=145 Identities=20% Similarity=0.107 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009268 323 LFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLY 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 402 (538)
.|+.+......+..+-..+++. ++.+..+++++...+..+..+.++..+++.+|+|+|+-++.+..+.++++.+++
T Consensus 21 lFfl~G~~~~l~diLip~l~~~----f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 21 LFFLWGFITCLNDILIPHLKEV----FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHhhcchhhHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555556667777 699999999999999999999999999999999999999999999999998887
Q ss_pred hhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 403 RTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
...........++.+++.+.+.+........++...-++ +....-+.+...+..+|++++|.+.+.+..
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~--------~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKP--------ESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc--------hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 654455666777778888888888888777888776665 455666888899999999999999998877
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=108.85 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=117.2
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--c--------------------
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY--G-------------------- 406 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------- 406 (538)
++++..+.|++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.++..... .
T Consensus 63 F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~ 142 (633)
T TIGR00805 63 FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS 142 (633)
T ss_pred hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence 699999999999999999999999999999999999999988888888777664321 0
Q ss_pred --------------------------CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHH
Q 009268 407 --------------------------SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIID 460 (538)
Q Consensus 407 --------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 460 (538)
......+++.-++.|++.+..++....++.+.+++ +.++...|+.+
T Consensus 143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--------~~~~~~~~i~~ 214 (633)
T TIGR00805 143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--------KNSPLYIGILE 214 (633)
T ss_pred ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--------cccHHHHHHHH
Confidence 00123445677889999999999999999888886 88999999999
Q ss_pred hHhHHHHHHhHHHHHHhhcc--C---------------------chHHHHHHHHHHHHHHHHHHHH
Q 009268 461 GTGSVGAALGPLLTGFLSTQ--G---------------------WDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 461 ~~~~~g~~i~~~~~g~l~~~--g---------------------~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
....+|..+|+.++|.+.+. + |+..|++.+++.++.++..+++
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987743 1 5556777776666655444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-09 Score=95.86 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=94.5
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchh
Q 009268 350 YLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429 (538)
Q Consensus 350 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (538)
+-+...+|++.+.+.++..+.++..|.++||+|||..+.++.+..++...+... ..+....+..=++.|++-+ ...
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---S~~F~afv~aR~l~Gi~kg-nl~ 139 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---SRNFAAFVLARFLGGIFKG-NLS 139 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhccC-chH
Confidence 456678899999999999999999999999999999998888777774444433 3455333333566676654 456
Q ss_pred hHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
...+++++..++ ++|+.+++.++....+|.++||.++|++..
T Consensus 140 v~rAiisdV~se--------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSE--------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcCh--------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 777888888876 889999999999999999999999999987
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=96.59 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=116.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchh-HH---HHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHA-FG---FYLI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~-~~---~l~~ 170 (538)
-|++ ..+..+......+...++.+++..+.||+|||+.++.+..+..+..+++.......... .| ..++
T Consensus 300 aG~~-------~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~ 372 (485)
T KOG0569|consen 300 AGFT-------PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA 372 (485)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5777 77888899999999999999999999999999999999999988888877642111111 11 1233
Q ss_pred HHHHHHhhhc-cCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHH
Q 009268 171 MQMVAGLFQA-TGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 171 ~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
+.++..++.+ +.-|...-+.+|.+|++.|+.++++......++..+-...-..+. .+|- +.|++..+.+++..+..+
T Consensus 373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence 4444444333 335788889999999999999999998888887766554444444 3453 788888888888888999
Q ss_pred hhhccCCCCC
Q 009268 249 LFLAAYPEDV 258 (538)
Q Consensus 249 ~~~~~~p~~~ 258 (538)
+.+||++.+.
T Consensus 452 ~~lPETkgr~ 461 (485)
T KOG0569|consen 452 RYLPETKGRT 461 (485)
T ss_pred HhCcccCCCC
Confidence 9999986543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=102.37 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=130.4
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
++++..+-+++++....|.+++.+.+|++.||+|.|+++..+.++.++..++.-.... .+.+..+++=++.|++.+..+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-~~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-IGFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHhHHHHhHHH
Confidence 6889999999999999999999999999999999999999999888887777655332 334456777788999999999
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
+.......+-.|+ ++|++..++.....++|.+++-+++|.+-+. ||+..|++.+++.++..++.+++...
T Consensus 147 pa~~~i~~~W~P~--------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 147 PAIGSILAKWAPP--------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred hhhhceeeeECCH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999888887 8899999999999999999999999999988 99999999999999888777766653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=94.99 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=126.5
Q ss_pred cCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 94 AKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 94 ~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
++||+ ..++.++.....+..+++++++|++.||+|.|+++..+++++.+.++..-+. ..-..+.++-.
T Consensus 282 ~~gls-------~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-----~~~~~f~i~gl 349 (438)
T COG2270 282 DLGLS-------STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-----EGELDFWILGL 349 (438)
T ss_pred HcCcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----cccHHHHHHHH
Confidence 38888 8999999999999999999999999999999999999999999988887776 55566777788
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFL 251 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~ 251 (538)
+.|...|+....+.++.++.+|+++-++.+|++....-.++.+||.+-+.+.+ .+-|..+....++..+ +++.++.+
T Consensus 350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i-Gl~~L~~v 428 (438)
T COG2270 350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI-GLLLLLRV 428 (438)
T ss_pred HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hHhhEEee
Confidence 99999999999999999999999999999999999999999999999888874 3567777766655444 35555555
Q ss_pred ccC
Q 009268 252 AAY 254 (538)
Q Consensus 252 ~~~ 254 (538)
|++
T Consensus 429 ~~~ 431 (438)
T COG2270 429 KVP 431 (438)
T ss_pred cCC
Confidence 544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-07 Score=84.31 Aligned_cols=326 Identities=11% Similarity=-0.010 Sum_probs=185.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhh-----hcCChhh-HHHHHHHHHHHHHHHhccccc------cchhHHHHHHHHH
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGD-----TLDLRLF-LTTGMVGSGIFVGLFGMGYFL------DIHAFGFYLIMQM 173 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~-l~~~~~~~~i~~~~~~~a~~~------~~~~~~~l~~~r~ 173 (538)
.++.+...-++ ..+. .-++|.++.| |+||||. ++-+..+.+..+++.+..... ..++...+....+
T Consensus 64 yt~~a~fS~ay-~P~s-LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~ 141 (510)
T KOG3574|consen 64 YTSQAIFSFAY-WPFS-LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFL 141 (510)
T ss_pred hhhhhhhhhhh-hHHH-HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHH
Confidence 44555433222 2333 3678999999 9999995 333555555544444432100 0123334444556
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--H------hCch---------HHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--D------YGWG---------WSFILP 236 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~------~gwr---------~~f~~~ 236 (538)
+.-+..+.-..+.-...-....+++.|.+......+.+.|..+|..+--.+. + .+|. ..++..
T Consensus 142 LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fw 221 (510)
T KOG3574|consen 142 LLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFW 221 (510)
T ss_pred HHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHH
Confidence 6677777777777777777888889888888777777777766643322221 1 1332 234445
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCch
Q 009268 237 GASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGV 316 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (538)
+.+.++...+..+.-+|+++.... + .+. ..+...+-++++++-|.+
T Consensus 222 g~~~~vat~Lv~~~kke~~~~~~~--------e---------------~~~-----------~i~~~yk~l~~vLklk~v 267 (510)
T KOG3574|consen 222 GALFIVATTLVALLKKENDESVDE--------E---------------LEL-----------GIHESYKLLRDVLKLKSV 267 (510)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhh--------h---------------hhc-----------CHHHHHHHHHHHHcCccH
Confidence 555555555555544443332100 0 000 111223345778888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH------HHhHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD------KLKARATTAAT 390 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d------r~~~~~~~~~~ 390 (538)
..+++.....-.++.+-....+.-+.+. |++..+.+++..+.....++.....|+... ++-|+....+.
T Consensus 268 ~~la~i~lt~K~gf~a~da~t~LkLle~-----Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~ 342 (510)
T KOG3574|consen 268 RWLAGILLTGKLGFQAADALTSLKLLEH-----GVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLG 342 (510)
T ss_pred HHHHHHHHHHHHHhhhhhhccchHHHHc-----CCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHH
Confidence 8888888888888888888889999997 999888777665444455555554444433 11222222222
Q ss_pred HHHHHHHHHHHHhhccC-c-----hHH-HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHh
Q 009268 391 FMYAAIPSMLLYRTYGS-V-----SQT-VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG 463 (538)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~-----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 463 (538)
...+........-.... . ... ..+....+.+.+....+...++..++..+| ..-|+.+.+.|+..
T Consensus 343 ~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp--------~iggTymTlLNTLs 414 (510)
T KOG3574|consen 343 GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDP--------AIGGTYMTLLNTLS 414 (510)
T ss_pred HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc--------ccCccHHHHHHHHH
Confidence 22222222221111111 0 111 111122334444444455555666666555 77899999999999
Q ss_pred HHHHHHhHHHHHHhhcc
Q 009268 464 SVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 464 ~~g~~i~~~~~g~l~~~ 480 (538)
++|+-.-..+...+.|.
T Consensus 415 nLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 415 NLGGNWPGTVALWLADG 431 (510)
T ss_pred HhcCCcHHHHHHHhccc
Confidence 99998888888888884
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.8e-08 Score=87.50 Aligned_cols=350 Identities=14% Similarity=0.091 Sum_probs=214.4
Q ss_pred HHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccc
Q 009268 115 AFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWF 194 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 194 (538)
...-.+.+.-++.=.+.|..-.|++++.-.+.......+.-+. ++.+.+-+.-+..|...+. ..+-++++-+..
T Consensus 50 vwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g-----~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~V 123 (433)
T KOG3810|consen 50 VWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG-----PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKV 123 (433)
T ss_pred chhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc-----CCchheeeehhhcChHHHH-HHhhhheeeeec
Confidence 3344555666677788999999999888777777777777777 9999999999999988754 477789998999
Q ss_pred ccCccchhhHHHHHHHhhhHhHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCC-C
Q 009268 195 GKRKRGLIMGVWNAHTSVGNISGSLLAASVLDYGW---GWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPS-S 270 (538)
Q Consensus 195 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gw---r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~ 270 (538)
+++++.++.|...+..-.|-..|..++-.+...+| ...=++ ......++.+..+++|..++..-.+.++++... +
T Consensus 124 d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~ 202 (433)
T KOG3810|consen 124 DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGD 202 (433)
T ss_pred CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhhhhcccccceecc
Confidence 99999999999999999999999988888875433 222222 222233345566667766544332222211110 0
Q ss_pred CCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcC
Q 009268 271 ERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEY 350 (538)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 350 (538)
.++... ..+..+..+ .....-..++....++|++..-.+-+.+..++++...++....-.+.. -+
T Consensus 203 ~e~~~~-----~~~~~~~l~-------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~---~~ 267 (433)
T KOG3810|consen 203 LEEMNP-----QASYMSYLR-------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA---PN 267 (433)
T ss_pred chhcCc-----cchhhHHHH-------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC---CC
Confidence 000000 000000000 000011123445567888877777888888888888888777766650 01
Q ss_pred CCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchh
Q 009268 351 LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARA-TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429 (538)
Q Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (538)
-.....|.+=++..+.++++.+..|.+--++.|.. .++......-.+++... ....+.|+..+..+++.........
T Consensus 268 ~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m--~~t~~Iw~~Ya~yvlfr~~y~l~it 345 (433)
T KOG3810|consen 268 PANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM--AQTQHIWVCYAGYVLFRVIYQLTIT 345 (433)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh--hcccceehhhhhHHHHHhhHhhhhh
Confidence 12233455666667777888888898876655543 33322222222222222 2345677777777777766666666
Q ss_pred hHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc------------CchHHHHHHHHHHHHHH
Q 009268 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ------------GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~------------g~~~~~~~~~~~~~~~~ 497 (538)
.....++..+.. +.-|..+|+..++.-+-..+-..+ +.|. -|..-|.+.+++.+++.
T Consensus 346 iA~~~iA~nL~~--------e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~ 414 (433)
T KOG3810|consen 346 IATFQIARNLSS--------ELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGF 414 (433)
T ss_pred HHHHHHHHhhhh--------hhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHH
Confidence 666667777764 778888888877665554444332 3442 24445666676666665
Q ss_pred HH
Q 009268 498 LL 499 (538)
Q Consensus 498 ~~ 499 (538)
.+
T Consensus 415 ~~ 416 (433)
T KOG3810|consen 415 GI 416 (433)
T ss_pred HH
Confidence 44
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8e-09 Score=104.09 Aligned_cols=174 Identities=11% Similarity=0.161 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHH
Q 009268 35 ILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDL 114 (538)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s 114 (538)
.++...+...+.+....+..+.+|...++ .+.+ ..+.+.+.+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-------------------------------~g~~-------~~~aa~l~S 340 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKS-------------------------------LGLS-------SNDAAFLLS 340 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------------cCCC-------hhhhHHHHH
Confidence 44555555666666666666777777665 6777 889999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcC--ChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhc
Q 009268 115 AFLACYSVGMFVAGHLGDTLD--LRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGN 192 (538)
Q Consensus 115 ~~~l~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 192 (538)
+..+...++.++.|+++|+.. ++.+..+++++.+++.+.++++ ++++.+...-.+.|++.|........++.|
T Consensus 341 iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-----~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~ 415 (509)
T KOG2504|consen 341 IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-----TTYVGLIVFSILFGFCVGSFSSLTPVILVD 415 (509)
T ss_pred HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4557788888889999999998 999999999999999999998888889999
Q ss_pred ccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-h-CchHHHHHHHHHHHHHHHHHHhhhc
Q 009268 193 WFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-Y-GWGWSFILPGASIVMGGIIVYLFLA 252 (538)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~-gwr~~f~~~~~~~~~~~~~~~~~~~ 252 (538)
..+.++...+.|+.....+++.++||+++|++.+ . +|...|+..++..++.+ ..++..+
T Consensus 416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~~~~ 476 (509)
T KOG2504|consen 416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLLILR 476 (509)
T ss_pred HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHHHhH
Confidence 9999999999999999999999999999997773 3 49999999998877754 4444444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=93.68 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=115.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHH----HHHHHHHHhhhcc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFY----LIMQMVAGLFQAT 181 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l----~~~r~l~G~~~g~ 181 (538)
....|.+.++..++=.+.-...+++..|+|.|+++.++.+.+++=..+.+.. .++.+.. ++...++|+..+.
T Consensus 242 ~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~----~~~~~~~~~~~~l~q~lhG~tf~~ 317 (400)
T PF03825_consen 242 GSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF----SDPWPFIVALQLLGQLLHGLTFGL 317 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHhhhhHHHHH
Confidence 4566777777777888888899999999999999999999998888887765 1333333 3345679999999
Q ss_pred CchhhhhhhhcccccCccchhhHHHHHH-HhhhHhHHHHHHHHHHH-hC------chHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 182 GWPSVVAVIGNWFGKRKRGLIMGVWNAH-TSVGNISGSLLAASVLD-YG------WGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 182 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~l~~~l~~-~g------wr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
.+.+...++.+..|++.|+++.+++.+. .++|..+|..++|++.+ +| |...+.+.+++.++..++.+++.||
T Consensus 318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998764 68999999999999984 33 5566677777666665666666554
Q ss_pred C
Q 009268 254 Y 254 (538)
Q Consensus 254 ~ 254 (538)
+
T Consensus 398 ~ 398 (400)
T PF03825_consen 398 K 398 (400)
T ss_pred C
Confidence 3
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-07 Score=80.24 Aligned_cols=334 Identities=13% Similarity=0.077 Sum_probs=173.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
..++|.+.....-..++.+.+.|.++|+-|||+.-+.-++.+.++++ .-.+ +.|-.++++|.+-|++.+..+.+
T Consensus 71 kG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhS-----pqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 71 KGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHS-----PQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred CCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcC-----CceEEEeehhhhhhHHHHHHHHH
Confidence 77888887777777888889999999999999976665555554443 2233 78889999999999999988888
Q ss_pred hhhh-hhcccccCccchhhHHHHHHHh----hhH----hHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 186 VVAV-IGNWFGKRKRGLIMGVWNAHTS----VGN----ISGSLLAASVLD---YGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 186 ~~~~-i~~~~~~~~r~~~~~~~~~~~~----~g~----~ig~~l~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
..+. ++|.. ++|+.-.-+....++ +|. +++.+.+..+.+ .|--.+|-..+.+..+...+..--..|
T Consensus 145 FEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~E 222 (454)
T KOG4332|consen 145 FESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSE 222 (454)
T ss_pred HHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhh
Confidence 7776 56654 344443333332222 333 333333333332 355556655444333322222222222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHH-
Q 009268 254 YPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYT- 332 (538)
Q Consensus 254 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 332 (538)
+-.+...+ +. -....+...+.+..++++.++.....+.-...|.
T Consensus 223 Nygdps~~------------------------kd-----------lltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytF 267 (454)
T KOG4332|consen 223 NYGDPSEN------------------------KD-----------LLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTF 267 (454)
T ss_pred ccCChhhh------------------------HH-----------HHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhhee
Confidence 21111000 00 0001111223444555554444333333333332
Q ss_pred HHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHh-hc--c-
Q 009268 333 FLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR--ATTAATFMYAAIPSMLLYR-TY--G- 406 (538)
Q Consensus 333 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~--~~~~~~~~~~~~~~~~~~~-~~--~- 406 (538)
...|.|..--+. .+. --|.+++.+.++.++|+-+..++..|-..| ..+.+.+.+..+...+... .. +
T Consensus 268 VFLWTPaLspn~----e~i---PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~ 340 (454)
T KOG4332|consen 268 VFLWTPALSPND----EEI---PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS 340 (454)
T ss_pred eeeecccCCCCc----ccC---CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 233444332111 122 246778888888888887777776654332 2233333333332222221 11 1
Q ss_pred CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh-hcc---Cc
Q 009268 407 SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL-STQ---GW 482 (538)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l-~~~---g~ 482 (538)
..+.....+..+++-.+.+..+|.+.-+-.+.+|. +.|++. .|.++---.++.-.+.-.+ .|. +-
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPE--------earsti---mNfFRvPLnifvClvLynlh~~~~p~~t 409 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPE--------EARSTI---MNFFRVPLNIFVCLVLYNLHVDAFPTTT 409 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCH--------HHHhhh---hhheechhhHhhhhhheecccccCcccc
Confidence 12333345556666777788889888888888885 666644 4444322222211111111 122 55
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009268 483 DAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~ 500 (538)
+..|.++.....++.+..
T Consensus 410 r~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 410 RNMFGICSAFLFVASILQ 427 (454)
T ss_pred chhhhhhHHHHHHHHHHH
Confidence 677777777666654443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-06 Score=90.86 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHhhhcc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDI---HAFGFYLIMQMVAGLFQAT 181 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~---~~~~~l~~~r~l~G~~~g~ 181 (538)
.+....+...+....-+..+++|.++|+ +|+++.+.++.+++.++.++.+++..+.. ......+++-.+..+|.|+
T Consensus 22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg 101 (654)
T TIGR00926 22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence 7777777778887788889999999996 69999999999999999988877522111 1123456677778889999
Q ss_pred CchhhhhhhhcccccC---ccchhhHHHHHHHhhhHhHHHHHHHHHH-Hh-------CchHHHHHHHHHHHHHHHH
Q 009268 182 GWPSVVAVIGNWFGKR---KRGLIMGVWNAHTSVGNISGSLLAASVL-DY-------GWGWSFILPGASIVMGGII 246 (538)
Q Consensus 182 ~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~-------gwr~~f~~~~~~~~~~~~~ 246 (538)
+-|...+...|.++++ +|...+.++..+.++|+.+++++..++. ++ +|...|.+.+++.++..++
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999754 3677888999999999999998888886 32 5999999988877765333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=91.50 Aligned_cols=131 Identities=27% Similarity=0.461 Sum_probs=111.5
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccch--hHHHHHHHHHHHHhhhccCch
Q 009268 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIH--AFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 107 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++. . +.+.+++.|+++|++.+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA-----PNVGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHhhhHHHHH
Confidence 367999999999999999999999999999988888887666666777776 4 489999999999999999999
Q ss_pred hhhhhhhccccc-CccchhhHHHHH-HHhhhHhHHHHHHHHHHHh---CchHHHHHHHHHHHH
Q 009268 185 SVVAVIGNWFGK-RKRGLIMGVWNA-HTSVGNISGSLLAASVLDY---GWGWSFILPGASIVM 242 (538)
Q Consensus 185 ~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~ig~~l~~~l~~~---gwr~~f~~~~~~~~~ 242 (538)
...+++.+++|+ ++|+...+.... ...+|..+++.+++.+... +||..|.........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999987 678999999888 5888889999888777744 899977776665544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=94.36 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=102.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.. .++.+.+++.-++.|++.+...+.
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~gi~~~~~~~~ 335 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---PGSPWLVLILFILAGIGYGAFFVI 335 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhHhhhcccccc
Confidence 34567888899999999999999999999999999999999999999888870 148999999999999999999999
Q ss_pred hhhhhhccccc-------CccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 186 VVAVIGNWFGK-------RKRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 186 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
..++++|..+. ++.|..+|.......+|..+++.+.+.+.
T Consensus 336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999873 34588888999999999999988877765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=83.76 Aligned_cols=129 Identities=16% Similarity=0.052 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHH-HHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMV-GSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~-~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
||+| +...+-+.+.-..-.++..++.|.++||+|++...+.+.. ...++-....|+ ++.=.+...
T Consensus 295 fGlS-------~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------~lsPy~~m~ 360 (459)
T KOG4686|consen 295 FGLS-------AVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------FLSPYTSMT 360 (459)
T ss_pred hCCC-------hhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------hccHHHHHH
Confidence 8999 8888999888888889999999999999999987766544 444444444443 333355666
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH----hCchHHHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD----YGWGWSFILPG 237 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~----~gwr~~f~~~~ 237 (538)
+.|+............++...|+++.|.+.|..++..++|..+.|++++++.+ +.|--+|++..
T Consensus 361 ~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 361 FLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 77877666555556677888888999999999999999999999999999983 34555555533
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-08 Score=96.82 Aligned_cols=117 Identities=12% Similarity=0.016 Sum_probs=95.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....++......++..++.++++++.||+|+|+++.++.++..++.++..+. +..+++.+++..++.|+|.+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 263 GLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---SVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4344444455567788899999999999999999999999888887777664 1246777778888999999999999
Q ss_pred hhhhhhcccccC-------ccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 186 VVAVIGNWFGKR-------KRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 186 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
..++.+|..+.+ ++|..+|+.+....+|..+|+.+.+.+.
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 3588999999999999999998888765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=95.83 Aligned_cols=172 Identities=11% Similarity=0.053 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH----HhHHHHHH-HHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK----LKARATTA-ATFM 392 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~-~~~~ 392 (538)
...+..+..+.....+..+++.|+.+. +|+++..+|.+.++..+...+..++.|+++|| +||||..+ .+..
T Consensus 13 ~yg~g~~~~~~~~~~~~~~l~~~~t~~----~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~ 88 (444)
T PRK09669 13 GYGLGDTACNLVWQTVMLFLAYFYTDV----FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI 88 (444)
T ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence 344455555666677788899999998 79999999999999999999999999999999 56656555 4444
Q ss_pred HHHHHHHHHHhhcc---CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHH
Q 009268 393 YAAIPSMLLYRTYG---SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAAL 469 (538)
Q Consensus 393 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 469 (538)
..++..++++.... ....++..+..++++.+......+..+...+...+ .++|++..++......+|+.+
T Consensus 89 ~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-------~~eR~~l~~~r~~~~~~G~~i 161 (444)
T PRK09669 89 PFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND-------PRERHSLQSWRFALSFIGGLI 161 (444)
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332211 11233444444555555555555555555554433 366888888888888888888
Q ss_pred hHHHHHHhhcc--------CchHHHHHHHHHHHHHHHHH
Q 009268 470 GPLLTGFLSTQ--------GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 470 ~~~~~g~l~~~--------g~~~~~~~~~~~~~~~~~~~ 500 (538)
++.+...+... +|...+.+.+++.+++.++.
T Consensus 162 ~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~ 200 (444)
T PRK09669 162 VSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC 200 (444)
T ss_pred HHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 77654433321 55656666665555544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=94.03 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH----HhHHHHHHH-HHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK----LKARATTAA-TFM 392 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~-~~~ 392 (538)
...+..+..++....+..+++.|+.+. .|+++..+|.++++.-+...+..++.|+++|| +||||..+. +..
T Consensus 10 ~yg~g~~~~~~~~~~~~~~l~~yyt~v----~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i 85 (473)
T PRK10429 10 SYGFGAFGKDFAIGIVYMYLMYYYTDV----VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL 85 (473)
T ss_pred hhccchhHHhHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence 445556666777778888999999998 79999999999999999999999999999995 588665554 444
Q ss_pred HHHHHHHHHHhhccC-c---hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHH
Q 009268 393 YAAIPSMLLYRTYGS-V---SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAA 468 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 468 (538)
..++...+++. .+. . ...+..+..++++++......+..+...+...+ .++|.+..++.....++|+.
T Consensus 86 ~~~i~~~llf~-~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-------~~eR~~l~~~~~~~~~ig~~ 157 (473)
T PRK10429 86 ANSVVLFLLFS-AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-------KREREQLVPYPRFFASLAGF 157 (473)
T ss_pred HHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 44444444432 111 1 122334444555666655555666666655533 37788888887777777766
Q ss_pred HhHHHHHH
Q 009268 469 LGPLLTGF 476 (538)
Q Consensus 469 i~~~~~g~ 476 (538)
+.+.+...
T Consensus 158 ~~~~~~~~ 165 (473)
T PRK10429 158 VTAGFTLP 165 (473)
T ss_pred HHHHHHHH
Confidence 66655443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-05 Score=77.18 Aligned_cols=331 Identities=13% Similarity=0.061 Sum_probs=166.6
Q ss_pred Hhhhhhhhh-----hcCChhhHHH-HHHHHHHHHHHHhcccc------------c-----cch--hHHHHHHHHHHHHhh
Q 009268 124 MFVAGHLGD-----TLDLRLFLTT-GMVGSGIFVGLFGMGYF------------L-----DIH--AFGFYLIMQMVAGLF 178 (538)
Q Consensus 124 ~~~~G~l~d-----r~Grr~~l~~-~~~~~~i~~~~~~~a~~------------~-----~~~--~~~~l~~~r~l~G~~ 178 (538)
-++|.++.| |+||||.-++ .-.+.++..+..+.... . ..+ +...+....++.=+-
T Consensus 52 KlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl 131 (544)
T PF13000_consen 52 KLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFL 131 (544)
T ss_pred HHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHH
Confidence 455666555 8999996443 45555555555444310 0 001 111233333344444
Q ss_pred hccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--Hh------------C---chHHHHHHHHHHH
Q 009268 179 QATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--DY------------G---WGWSFILPGASIV 241 (538)
Q Consensus 179 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~~------------g---wr~~f~~~~~~~~ 241 (538)
.+.-..+.-...-....+++++.+......+.++|..++-.+--.+. ++ | -..-..+.|.+.+
T Consensus 132 ~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l 211 (544)
T PF13000_consen 132 CATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFL 211 (544)
T ss_pred HccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHH
Confidence 45555666666666677788888877766666666666543322222 11 1 1122334455555
Q ss_pred HHHHHHHhhhccCCCCCCCCCCC-CCCCC-CCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 242 MGGIIVYLFLAAYPEDVGFPYAN-DPIPS-SERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
+..+.+.++.+|.|.....+..+ .+..+ +.++...+..+.+...++.. ...+.....+.+++|.|.+..+
T Consensus 212 ~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~Y~~l~~ilkLp~V~~l 283 (544)
T PF13000_consen 212 IVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTEEI--------LSIKDVYKSLWKILKLPNVQTL 283 (544)
T ss_pred HHHHHHheEeecccccccCccccccccccccccccceecccccccchhhh--------hhHHHHHHHHHHHHcCchHHHH
Confidence 55566666667765433211111 00000 00000000000000000000 0112234456777889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHH-------------
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KAR------------- 384 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~------------- 384 (538)
++.....-+++..-......=+.+. |++.++.+.+..+. +...++.|+++.|+ |++
T Consensus 284 i~ilL~~KigF~a~da~T~LKLlEk-----G~~KE~LAl~~li~----~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~ 354 (544)
T PF13000_consen 284 IIILLTAKIGFQANDAVTSLKLLEK-----GLSKEDLALLVLID----FPFQIILPYYIGKWSAGSPPLDVDNKALPNFS 354 (544)
T ss_pred HHHHHHHHhccccchhhhHHHHHHc-----CCCHHHhHHHHHHh----hhHHHHHHHHhhhhhcCCCccccccccccccc
Confidence 8888888888877777777788887 99988877665443 34445555555554 222
Q ss_pred ----------------HHHHHHHHHHHHHHHH---HHhhcc-Cc--hH--HHHHHH-HHHHHHhhccchhhHHHHHHhhc
Q 009268 385 ----------------ATTAATFMYAAIPSML---LYRTYG-SV--SQ--TVNIVL-MMVAGLFVNGPYALITTAVSADL 439 (538)
Q Consensus 385 ----------------~~~~~~~~~~~~~~~~---~~~~~~-~~--~~--~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 439 (538)
+....++..-.+..++ +...++ .. +. ...++. ..+-.+.....+....+.-++..
T Consensus 355 ~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharIS 434 (544)
T PF13000_consen 355 RANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARIS 434 (544)
T ss_pred cccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111111111111111 111112 11 11 111222 22223333334555555555555
Q ss_pred CCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 440 GTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 440 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
+| ..-|+.+.+.|+..++|+.--..+.=++.|
T Consensus 435 DP--------~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 435 DP--------AIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred Cc--------ccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 54 778999999999999999877766666666
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9e-08 Score=88.29 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=96.8
Q ss_pred HHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhcccccC
Q 009268 118 ACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKR 197 (538)
Q Consensus 118 l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 197 (538)
+.-.-|.++.+.+.||+|||+.|..+.+++++..++...+ .+-..+.+.-+..-++..+.+.+.+.+..|.+|..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchheEEEEecCcccchh
Confidence 3455688999999999999999999999999999988887 33333333333333444555677899999999999
Q ss_pred ccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009268 198 KRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAA 253 (538)
Q Consensus 198 ~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~~~~~~ 253 (538)
-|+...|.-..+.-+|.++.|+++ ...+.+-..+..+.+.+.++.++... ++|-
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavc-ffPi 520 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVC-FFPI 520 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHhe-eeee
Confidence 999999999999999999999999 33344445566666776666555444 4443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-07 Score=94.09 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=118.5
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchh
Q 009268 350 YLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYA 429 (538)
Q Consensus 350 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (538)
..+.....+..+++.+|.++|.++.|.++||+|||+.+..+..+..+..+.... ..+.+..+++-++.|++.++...
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~---a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF---APNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHhhccchhH
Confidence 556677778888999999999999999999999999999999888887766555 46888889999999999999999
Q ss_pred hHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHHH
Q 009268 430 LITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~ 499 (538)
....++.|.+++ +.|+.+..+ ......++.+++...+++.. +|+..+++..+..++..++
T Consensus 191 ~~~~~~~E~~~~--------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 191 VGFGLVAEIVSP--------KQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HhHhhheeecCc--------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 999999999997 889999998 78888888899988888877 7999988887777766555
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-06 Score=78.08 Aligned_cols=155 Identities=17% Similarity=0.111 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchH
Q 009268 331 YTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQ 410 (538)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
.+....++..-++ +|.|...+|++.++..++.-+.+++..++.+|+|.++.+..+.++.+++..+=.. .+.
T Consensus 29 tsvgPLL~~Ir~~-----~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~----~~~ 99 (395)
T COG2807 29 TSVGPLLDEIRQD-----LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL----GGL 99 (395)
T ss_pred hhhhhhHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc----ccH
Confidence 3344444555445 4999999999999999999999999999999999999988887777665544222 255
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIM 488 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~ 488 (538)
+..+....+.|.+.+..+...+..+.+++| +..+..+|++.+..++++++++.+.-.+.+. +|+.++.+
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fp---------k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFP---------KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhcc---------cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 666777788899999999999999999998 6779999999999999999999998888887 69998888
Q ss_pred HHHHHHHHHHHHHHH
Q 009268 489 LMVGALIAGLLLSRL 503 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~ 503 (538)
-+...+++.++.+..
T Consensus 171 WAl~allAl~~WlPq 185 (395)
T COG2807 171 WALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHhhh
Confidence 888777766655543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=91.66 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccc--c---ccchhHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGY--F---LDIHAFGFYL 169 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~--~---~~~~~~~~l~ 169 (538)
+|++ +.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+.. + ...++.+.++
T Consensus 283 lG~s-------~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~ 355 (468)
T TIGR00788 283 LPGG-------PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL 355 (468)
T ss_pred CCCC-------cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence 6777 99999999999999999999999999999999999999999988876653210 0 0013344566
Q ss_pred HHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH-hC-----ch--HHHHHHHHHHH
Q 009268 170 IMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD-YG-----WG--WSFILPGASIV 241 (538)
Q Consensus 170 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~-~g-----wr--~~f~~~~~~~~ 241 (538)
..-++.+++.+..+.+...++.+..|+++++...++..+..++|..+++.+++.+.+ +| ++ +...+...+.-
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~ 435 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAP 435 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence 677888999898889999999999999999999999999999999999999998884 34 33 33333232222
Q ss_pred HHHHHHHhhhcc
Q 009268 242 MGGIIVYLFLAA 253 (538)
Q Consensus 242 ~~~~~~~~~~~~ 253 (538)
+..+...+++|+
T Consensus 436 l~~l~~~~llP~ 447 (468)
T TIGR00788 436 LLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHhCCC
Confidence 333444456775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=88.75 Aligned_cols=170 Identities=10% Similarity=0.050 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH----HhHHHHHHHH-HH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK----LKARATTAAT-FM 392 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~-~~ 392 (538)
...+..+..+.....+..++..|+.+. .|+++..+|.++.+.-+.-.+.-++.|.++|| +||||..+.. .+
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~----~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDI----FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 344555556667777788899999998 79999999999999999999999999999997 4777666544 45
Q ss_pred HHHHHHHHHHhhccCch----HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHH
Q 009268 393 YAAIPSMLLYRTYGSVS----QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAA 468 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 468 (538)
..++..++++. .+..+ ..+..+..+++..+......+..++..+..++ .++|++..++......+|+.
T Consensus 89 ~~~i~~~llf~-~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-------~~eRt~l~s~r~~~~~iG~~ 160 (460)
T PRK11462 89 PFGIVCVLAYS-TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-------PTQRISLQSWRFVLATAGGM 160 (460)
T ss_pred HHHHHHHHHHh-CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 55555544433 22111 23444455556666666555555666555544 48899999999999999888
Q ss_pred HhHHHHHHhhcc--------CchHHHHHHHHHHHHHHHH
Q 009268 469 LGPLLTGFLSTQ--------GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 469 i~~~~~g~l~~~--------g~~~~~~~~~~~~~~~~~~ 499 (538)
+++.+...+.+. +|.....+.+++.+++..+
T Consensus 161 ~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 161 LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 887765544432 3454444455444444333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4e-07 Score=91.03 Aligned_cols=147 Identities=22% Similarity=0.266 Sum_probs=120.2
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
.++...+.+.+.+++.++.+++.+.++.+.||++..+.+....+...+..++-.. ..+.+..+++-++.|++.+..+
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHhcccc
Confidence 3577778899999999999999999999999999666655554444443333222 3578888899999999999999
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc-------cCchHHHHHHHHHHHHHHHHHH
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST-------QGWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-------~g~~~~~~~~~~~~~~~~~~~~ 501 (538)
|....++..-+.. +++|..+|+.++...+|+++|+.++..+.+ .||++.|++-+++.++..++.+
T Consensus 153 P~~~~~lg~wy~~--------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 153 PGVVAILGNWYGK--------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred hHHHHHHHhhcCh--------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 9999999998885 889999999999999999999999887543 2999999999999988887776
Q ss_pred HHhhh
Q 009268 502 RLVIA 506 (538)
Q Consensus 502 ~~~~~ 506 (538)
++.+.
T Consensus 225 ~~lp~ 229 (495)
T KOG2533|consen 225 FFLPD 229 (495)
T ss_pred EEecC
Confidence 65543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-06 Score=76.88 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC-
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGS- 407 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~- 407 (538)
..|.+..|.|..-.+ +|+|..+...+.....++..+| ++.|.+.||+|.+..+.++.....++...++.....
T Consensus 17 t~Y~Fs~yS~~Lk~~-----l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSR-----LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred cccchhhhhHHHHHH-----hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455666666665554 5999999999999989988774 889999999999999999999888888777654322
Q ss_pred ---chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchH
Q 009268 408 ---VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDA 484 (538)
Q Consensus 408 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~ 484 (538)
.+.|...+..++.|.+.............+.+| +.||++.|+.-....+++++-..+...+.+.+...
T Consensus 91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP---------~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~ 161 (250)
T PF06813_consen 91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP---------RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS 161 (250)
T ss_pred cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc---------cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH
Confidence 244554444455444433333444444456776 67899999999999999888888777766664443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009268 485 VFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~ 503 (538)
-+.+.+....+..++..++
T Consensus 162 fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444444443333333333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=83.36 Aligned_cols=175 Identities=19% Similarity=0.104 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH----hHHHHHHHHH-
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL----KARATTAATF- 391 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----~~~~~~~~~~- 391 (538)
.......+..+..+.....|+..|..+. .|+++..+|.++.+.-+.-.+.-++.|.++||. ||+|..++..
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv----~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDV----FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcc----cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 3455666777778888889999999999 799999999999999999999999999999974 6666655444
Q ss_pred HHHHHHHHHHHhhcc---CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHH
Q 009268 392 MYAAIPSMLLYRTYG---SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAA 468 (538)
Q Consensus 392 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 468 (538)
+..++...+++.... ........+..++++++......+..++.++...+ .++|.+..+.-.....+|..
T Consensus 91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d-------~~ER~~l~s~R~~~~~~g~~ 163 (467)
T COG2211 91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD-------PQERASLTSWRMVFASLGGL 163 (467)
T ss_pred HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 444444444443221 23455667777788888887777776776666554 47889999999999999988
Q ss_pred HhHHHHHHhhcc--------CchHHHHHHHHHHHHHHHHHHH
Q 009268 469 LGPLLTGFLSTQ--------GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 469 i~~~~~g~l~~~--------g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+...+.+.+... ||+....+.+++.++..+++++
T Consensus 164 l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 164 LVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 877777666553 4555555555554444444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=72.85 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhc
Q 009268 113 DLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGN 192 (538)
Q Consensus 113 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 192 (538)
.++.+....+++++...+.+++|.|+.++++.+.+.+-...... ++.+.++.+-.+.|++.+..+.+...++.+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 56666777888889999999999999999999999876555433 788999999999999999999999999999
Q ss_pred ccccCccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 193 WFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 193 ~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
..++++|++..+++......+.++|.++...+.
T Consensus 117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888877765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.8e-07 Score=84.52 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=85.3
Q ss_pred CCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc----hHHHHHHHHHHHHHhhcc
Q 009268 351 LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV----SQTVNIVLMMVAGLFVNG 426 (538)
Q Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~ 426 (538)
++....+.+..+..++.++|+++.|++.||+|||+......+++.++.++.......+ -.+++...=+++|++.++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 5666778888899999999999999999999999998888777777766433322111 123444445678999999
Q ss_pred chhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 427 PYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
=+|...++.+|.... +.||.-.+.+.++..+|...|..+
T Consensus 161 DYPlSAtI~SE~an~--------~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 161 DYPLSATIMSESANK--------KTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred CCcchHHHhhhhhhh--------ccccceeEEEEEecchhHhhccHH
Confidence 999999998887654 778887777766666665555444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-06 Score=84.49 Aligned_cols=133 Identities=20% Similarity=0.321 Sum_probs=109.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHH
Q 009268 355 TAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTA 434 (538)
Q Consensus 355 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 434 (538)
+.+++.+...+++.+++++.|+++|++|||+.+.++.++..++.++.... .+.....+.=++.|++.+........+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhh
Confidence 34789999999999999999999999999999999999988888887663 477777888889999999988888888
Q ss_pred HHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---CchHHHHHHHHHHHHHHHH
Q 009268 435 VSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~ 499 (538)
..|..|+ +.||...+..+....+|..++ .+.+...+. +|+..+.+..+..++..+.
T Consensus 167 ~sEiap~--------~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 167 ISEIAPA--------HIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred HhhcCCh--------hhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 8777765 899999999998888888877 555555443 7997777776666665555
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9e-07 Score=86.07 Aligned_cols=135 Identities=14% Similarity=0.143 Sum_probs=121.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
+...|........+-.+.-++.+++..|+|+-+++.+++.+..+=.+..+.. +|.|+.+-..+++|+..+..+.+
T Consensus 405 ~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 405 KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHH
Confidence 6777888888888888999999999999999999999999999999999888 99999999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHHHH-HHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHH
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNA-HTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGI 245 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~ 245 (538)
..+++++..||+-|..+.++.+. ..++|-.+|.++||.+. .+|=|..|.+.++.+++..+
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 45688899999999988 67889999998887776533
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=84.10 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKA-RATTAATFMYA 394 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~-~~~~~~~~~~~ 394 (538)
.+...+..++.......+..-.-.|+++.. .+-+.+-.|++.+...++..+++++.|+...|.+. |+.++++.+++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD---~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLD---PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcC---CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 344445555555544444555566777731 26777888999999999999999999999999876 77788888888
Q ss_pred HHHHHHH-HhhccCc-hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 395 AIPSMLL-YRTYGSV-SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 395 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
.++.++. ....... ..+++++.-++.|++.+.. ...-.+++....+ +.|.++++..+....+|.++||.
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~--------~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTV--------EDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc--------cchHHHHHHhhhHHHHHHHHhHH
Confidence 7777665 3322233 5666677777888876553 4444555443332 55666677666666666666665
Q ss_pred HHHHhh----cc----------CchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009268 473 LTGFLS----TQ----------GWDAVFIMLMVGALIAGLLLSRLVIAEITEK 511 (538)
Q Consensus 473 ~~g~l~----~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (538)
+...+. +. -|..+-|+++++.++..++..+..++..++.
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 543332 21 2556777788888887777776666544433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.4e-06 Score=84.86 Aligned_cols=166 Identities=12% Similarity=0.050 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhccC
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARATTAATFMYAAIPSMLLYRTYGS 407 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (538)
.+|++...+..|+.+. +|++...+..+...+....-+..+++|+++|++ |+++.+.++.++..++.+++......
T Consensus 2 syYGm~aiLvlYl~~~----lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 2 SYYGMRTILVLYFLNF----LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP 77 (654)
T ss_pred ceeecHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4567777788888877 699988888887777777777889999999985 88888888888877766665442111
Q ss_pred -----chHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--
Q 009268 408 -----VSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-- 480 (538)
Q Consensus 408 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 480 (538)
......++.+.+...+.++.-+...+...+.+++.+ .+.+-..+.+.....++|+.+++.+.+++.+.
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~-----~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~ 152 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ-----LSLRSRFFSFFYFAINAGSLISTIITPILRGDVG 152 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112234455666777888888888888888776422 24577889999999999999999999988732
Q ss_pred ------CchHHHHHHHHHHHHHHHHHHHH
Q 009268 481 ------GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 481 ------g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+|..+|.+.+++++++.++....
T Consensus 153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 153 CFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 58888888888888776665443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0038 Score=61.05 Aligned_cols=265 Identities=8% Similarity=-0.068 Sum_probs=151.9
Q ss_pred ccchhhHHHHHHH-HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccc-----------------h----
Q 009268 106 TSKLGEIDLAFLA-CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDI-----------------H---- 163 (538)
Q Consensus 106 ~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~-----------------~---- 163 (538)
+..+.++-+..-+ +..+..++.+++.+++.+.+++-.-+..+....+++++..++.. +
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 6677888777777 66778899999999999999988888888888888887644210 0
Q ss_pred ------hHHHHHHHHHHHHhhhccCch-hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh--C------
Q 009268 164 ------AFGFYLIMQMVAGLFQATGWP-SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY--G------ 228 (538)
Q Consensus 164 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~--g------ 228 (538)
+.|...+.-++.=+-...... .-.....|.+..+|-.|..++++.+.+++..++..+..++.+. .
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~ 219 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK 219 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH
Confidence 113333333333333233333 4456778888889999999999999999999988888777631 1
Q ss_pred ---chHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccc
Q 009268 229 ---WGWSFILPGASIVMGGIIVYLFLAAY-PEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTS 304 (538)
Q Consensus 229 ---wr~~f~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (538)
-+..+.+.++.+++. ++...++.+. .++.....+..+.++ ++ +.+-.-.
T Consensus 220 ~~~~~~~~~vi~~~~~i~-~~l~~~~~r~il~~~~f~~~~~~kk~---------------~~-----------k~k~~~~ 272 (509)
T COG3202 220 DLLLQILFIVIVILGIIA-ILLYRYINRNVLTDPLFYLRAKKKKK---------------KK-----------KLKLGLI 272 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCcchhHHHhcccc---------------cc-----------cccCcHH
Confidence 233444444444443 3333333221 111110000000000 00 0111223
Q ss_pred cchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch---hhhhhhhhhhh-hhhHHHHHHHHHHH
Q 009268 305 VGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT---AGNLSTLFDVG-GIFGGIIAGYISDK 380 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~---~g~~~~~~~~~-~~~~~~~~g~l~dr 380 (538)
.+.+.+.++|-++.+++...+++.+...+...--.-.++. +-...+. .|.+....++. .++...+++.+.+|
T Consensus 273 ~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~----~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~ 348 (509)
T COG3202 273 ESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKEL----YPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRR 348 (509)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4456677888777777777766666655443222222222 1111112 22333344444 45566778888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 009268 381 LKARATTAATFMYAAIPSMLL 401 (538)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ 401 (538)
.|-....++..+...+..+++
T Consensus 349 ~GW~~~AlitPiv~litg~lF 369 (509)
T COG3202 349 VGWFTGALITPLVMLITGVLF 369 (509)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 887776666666555554443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0024 Score=64.14 Aligned_cols=268 Identities=11% Similarity=0.031 Sum_probs=150.3
Q ss_pred ccchhhHHHHHHH-HHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccccc-----ch----------------
Q 009268 106 TSKLGEIDLAFLA-CYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLD-----IH---------------- 163 (538)
Q Consensus 106 ~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~-----~~---------------- 163 (538)
++.+..+-....+ ...+...+..++++++++.+++-+....+.....++++..+++ ++
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~ 136 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG 136 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence 5566666554444 3445577889999999999988877777666666666542211 11
Q ss_pred -----hHHHHHHHHHHHHhhhccCch-hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH----------h
Q 009268 164 -----AFGFYLIMQMVAGLFQATGWP-SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD----------Y 227 (538)
Q Consensus 164 -----~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~----------~ 227 (538)
+.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.+ .
T Consensus 137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~ 216 (491)
T PF03219_consen 137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVD 216 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 123333333333333233333 457888999999999999999999999999999888777766 2
Q ss_pred CchHHHHHHHHHHHHHH---HHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccc
Q 009268 228 GWGWSFILPGASIVMGG---IIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTS 304 (538)
Q Consensus 228 gwr~~f~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (538)
.|...+.....+.++.+ +.....+.+.....+...+. ...+ .+ ++.+....
T Consensus 217 ~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~-~~~~--------------kk-----------~k~k~s~~ 270 (491)
T PF03219_consen 217 AWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPS-AKKK--------------KK-----------KKPKMSLK 270 (491)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchh-hhcc--------------cc-----------cCCCccHH
Confidence 36544332222222111 22223333221111000000 0000 00 00122233
Q ss_pred cchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 009268 305 VGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKAR 384 (538)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 384 (538)
++.+.++++|.+..+++...+.+.....+....-..+++.+..+..++. -.|......++..++..++++.+.+|+|-+
T Consensus 271 es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysa-fmG~~~~~tGivtii~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 271 ESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSA-FMGKFSSWTGIVTIIMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5567778888887777777766666665555444455554100011111 123445555666666778889999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 009268 385 ATTAATFMYAAIPSML 400 (538)
Q Consensus 385 ~~~~~~~~~~~~~~~~ 400 (538)
....+..+++.+..+.
T Consensus 350 ~~AlitPiv~lit~~~ 365 (491)
T PF03219_consen 350 TAALITPIVILITGLL 365 (491)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 8777665555544433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-05 Score=75.23 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhh-hcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGD-TLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
||++ ..+...+......|..++-...|++.. |.++++.-.+++.+..++..+..++ -...+.+.+...-+
T Consensus 239 fgms-------v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a--~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 239 FGMS-------VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA--GPLGSPWLFRPGVF 309 (403)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH--HhcccchHHHHHHH
Confidence 7888 899999999999999999999999888 6788888878888777776665544 11267889999999
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHHh-----------CchHHHHHHHHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLDY-----------GWGWSFILPGASIVM 242 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~-----------gwr~~f~~~~~~~~~ 242 (538)
+.|++.|.+.....+...+...+++.|..+|.+.....++..+|..+++.+.+. +|..+|.+.+++.++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987642 366777777766555
Q ss_pred H
Q 009268 243 G 243 (538)
Q Consensus 243 ~ 243 (538)
.
T Consensus 390 a 390 (403)
T PF03209_consen 390 A 390 (403)
T ss_pred H
Confidence 4
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-05 Score=71.37 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=103.1
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
+|++..+.+.++....+..++...+.|.++||+|||+..++..++..+.++.-. .++.+..++.=++.|+.....+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~----~~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH----SSNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999998888888777765432 3566666777778888887777
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHHh-HhHHHHHHhHHHHHHhhcc---CchHHHHHHHHHHHHHHHHHH
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIIDG-TGSVGAALGPLLTGFLSTQ---GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~ 501 (538)
...-++...+-.. ..-+++..+..++...+ .+.+-.+.+..++-.+.+. |...+|.....+.+++.++..
T Consensus 140 S~FEsW~V~Eh~~---~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 140 SAFESWMVHEHNK---RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 7776666655322 11123555666665553 2334455555555566655 457788877777777666544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-05 Score=67.54 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=175.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhh
Q 009268 109 LGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVA 188 (538)
Q Consensus 109 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 188 (538)
.|.+.-+-.+...+..+....+.||+---.=..+..++.+.+.++.+++ ++.++-+.+-.+..++.|.....-.+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs-----~s~~~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS-----NSVPMSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec-----cchhHHHhhhhhhhhcCCcceeehhh
Confidence 4666666677777788888888998755444555666778888888998 88998888888888888776555555
Q ss_pred hhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009268 189 VIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD---YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAND 265 (538)
Q Consensus 189 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 265 (538)
+-+. +++ ...+-++.+.+.++++|..--..+.+ ++-|.+.++...+.++.+...++.+++++.... +.-++
T Consensus 139 lss~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~-ptl~~ 212 (409)
T KOG3880|consen 139 LSSR-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYS-PTLQP 212 (409)
T ss_pred hhcc-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccC-CCcCc
Confidence 4443 332 33455555555555666543334433 567888888888887777777777765543332 11111
Q ss_pred CCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhc-cCchHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 009268 266 PIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACL-IPGVIPFAFCLFFAKLVAYTFLYWL-PFYLSQ 343 (538)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 343 (538)
+.+...++....+. .+.+. . .+.....++-++ .+.....++-.+..++..|.++.-+ +..+-+
T Consensus 213 ~~~~~~~~~~~~~a---~e~~s-v-----------~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~ 277 (409)
T KOG3880|consen 213 STEIIPSQYLPFEA---AEEKS-V-----------PSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFP 277 (409)
T ss_pred cceeccCCCCcccc---ccccc-C-----------chhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEec
Confidence 11111111111000 00000 0 001111222221 1223334444455555555554433 222221
Q ss_pred cccCCcCCCc-chhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 344 TEIGGEYLSV-KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 344 ~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
- .+++..+. .+.-+....+.+|..+++--.-..- +..-+.+.+...+-.+..++=..+...++.+...++.+.-|+
T Consensus 278 c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~--~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL 354 (409)
T KOG3880|consen 278 C-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFT--MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL 354 (409)
T ss_pred c-ccCCccchhhcchhhheeeeeeEEEEeccceEEe--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 0 11122222 2344666677776665442221111 111122222222222222222222334566776777777888
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLT 474 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~ 474 (538)
..|..+...+--+.++.++ +.|--+++...+.-.+|-.++..++
T Consensus 355 lGGasYVNTf~~i~~e~~p--------d~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 355 LGGASYVNTFHNIHKETEP--------DVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred cCchHHHHHHHHHhhcCCc--------hHHHHhHhhheecchhhHHHHHHHh
Confidence 8888888888888887776 6677778877777777766666553
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=7e-07 Score=64.88 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=72.1
Q ss_pred HHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHHHHHHHHHHh
Q 009268 46 YHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMF 125 (538)
Q Consensus 46 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~ 125 (538)
..+.|+.+++++|.|.+| .++| .++.|++.+..++||.+|.+
T Consensus 4 mGigRFayTplLP~M~~~-------------------------------~~ls-------~~~ag~lasaNy~GYL~GAl 45 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQAD-------------------------------GGLS-------LSQAGWLASANYLGYLVGAL 45 (85)
T ss_pred hhhHHHHHHhHhHHHHHh-------------------------------cCCC-------HHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999988 6788 99999999999999999999
Q ss_pred hhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHH
Q 009268 126 VAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFY 168 (538)
Q Consensus 126 ~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l 168 (538)
...++.++..+++.+..+.+...+.++.+++. ++++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~-----~~~~~w 83 (85)
T PF06779_consen 46 LASRLPRHSRPRRLLRAGLLLTVLSTAAMALT-----HSFWLW 83 (85)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-----hchHHH
Confidence 99999999999999999999999999999997 776654
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00026 Score=70.44 Aligned_cols=291 Identities=16% Similarity=0.064 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH----H---hCch-HHHHH
Q 009268 164 AFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL----D---YGWG-WSFIL 235 (538)
Q Consensus 164 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~----~---~gwr-~~f~~ 235 (538)
.++..++.-++.|++.+.......++.+ .+|++ .++.+..+.+++++++.++--... + .-++ ..|+.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 5777777788899998888887777776 45642 456666666666666554432221 1 1111 33444
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCC--CC-----CCCCCCCCCCCCCc-ccc---ccccccccccccC-ccc-ccCCCCc
Q 009268 236 PGASIVMGGIIVYLFLAAYPEDVGF--PY-----ANDPIPSSERLPND-EES---HMQKGKTAAVENN-SGI-RYGSGSR 302 (538)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~~--~~-----~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-~~~-~~~~~~~ 302 (538)
.+.+..+.+++.+..+++.|..+.. +. .+++..++..+.++ +.. .+........... +.. .+++++.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKP 259 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccCCccchhc
Confidence 4555555556666666554321110 00 00000000000000 000 0000000000000 000 0001112
Q ss_pred cccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcc-hhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009268 303 TSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVK-TAGNLSTLFDVGGIFGGIIAGYISDKL 381 (538)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~ 381 (538)
...+.+.++| +.|...+..++. +......+|-+..+......+.+.. ..-..+..++++-.+|+.+..+..- -
T Consensus 260 ~~~~~~~v~k--ki~~~~~~vf~~---F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~~-p 333 (437)
T TIGR00939 260 LKTSVWVVFT--KVWLLAFSVVFV---FTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFMW-P 333 (437)
T ss_pred ccCcHHHHHH--HHHHHHHHHHHH---HHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeEe-e
Confidence 2334455544 344444444443 3333345566554431100112221 3335667788888888886654321 1
Q ss_pred hHH-HHHHHHHH--HHHHHHHHHHhhcc-------CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccch
Q 009268 382 KAR-ATTAATFM--YAAIPSMLLYRTYG-------SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRA 451 (538)
Q Consensus 382 ~~~-~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (538)
++| +.+.+..+ +..+..+++....+ -.+.+..++..+++|+..|-.........++.+++ ++
T Consensus 334 ~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~--------~e 405 (437)
T TIGR00939 334 DEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP--------HE 405 (437)
T ss_pred CCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH--------HH
Confidence 122 12222111 12233333222111 13555667778888888877766666666666554 44
Q ss_pred hHHHHHHHHhHhHHHHHHhHHH
Q 009268 452 LATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 452 ~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
+..+..+..++-.+|-.+|..+
T Consensus 406 ~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 406 REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666655544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-08 Score=99.81 Aligned_cols=138 Identities=18% Similarity=0.281 Sum_probs=106.0
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHH
Q 009268 355 TAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTA 434 (538)
Q Consensus 355 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 434 (538)
..++..+...++.++|+++.|+++||+|||+.+..+..+..++.++........+.+...+.-++.|++.++.......+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~ 126 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIY 126 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45678888999999999999999999999999988888877777666553211256677777788999999999999999
Q ss_pred HHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc----CchHHHHHHHHHHHHHHHHH
Q 009268 435 VSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ----GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----g~~~~~~~~~~~~~~~~~~~ 500 (538)
+.|..++ +.|+...++.+....+|..++..+.-.+.+. +|+..+.+..+..++..+..
T Consensus 127 ~~E~~~~--------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 127 ISEIAPP--------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred ccccccc--------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9888876 8889989988888888888777665433222 48887777666665544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.6e-06 Score=58.61 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY 393 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 393 (538)
.+-..+++.......+..++|.|+++. |+++.+.|.+.++..+..+++.++.|+++||.++++.......+
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~-----Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQL-----GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 445667777788888999999999987 99999999999999999999999999999999998887665544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00071 Score=69.35 Aligned_cols=138 Identities=11% Similarity=0.062 Sum_probs=103.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhc-CChhhHHHHHHHHHHHHHHHhcccccc-----------------ch---h
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTL-DLRLFLTTGMVGSGIFVGLFGMGYFLD-----------------IH---A 164 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~-----------------~~---~ 164 (538)
...+.-..+.+.-......+.++.++|-| ||-+++.++.++..++.++..++...+ .. .
T Consensus 72 ~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q 151 (571)
T KOG1237|consen 72 GGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQ 151 (571)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHH
Confidence 55566677888878888889999999975 888999999998888866555431111 00 1
Q ss_pred HHHHHHHHHHHHhhhccCchhhhhhhhcccc---cC---ccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHH
Q 009268 165 FGFYLIMQMVAGLFQATGWPSVVAVIGNWFG---KR---KRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPG 237 (538)
Q Consensus 165 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~ 237 (538)
...++...-+..+|.|+.-|...+.-+|-++ ++ .+...+.++....+.|..++..+..++. +.||.+.|.+..
T Consensus 152 ~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~ 231 (571)
T KOG1237|consen 152 LAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT 231 (571)
T ss_pred HHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence 2356666667888999999999999999998 32 2346788888889999998888777775 679999999887
Q ss_pred HHHHHH
Q 009268 238 ASIVMG 243 (538)
Q Consensus 238 ~~~~~~ 243 (538)
+...+.
T Consensus 232 ~~~~la 237 (571)
T KOG1237|consen 232 VLNALA 237 (571)
T ss_pred HHHHHH
Confidence 766654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=65.38 Aligned_cols=243 Identities=13% Similarity=0.139 Sum_probs=116.1
Q ss_pred CccchhhHHHHHHHhhhHhHH--HHHHH-HHH---HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCC
Q 009268 197 RKRGLIMGVWNAHTSVGNISG--SLLAA-SVL---DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSS 270 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig--~~l~~-~l~---~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 270 (538)
|+|+..+.+...++++|.++. |.+-. -.. .-.|++.+.+.+++.++..++..++ +..-+...+.+++++.+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if--Gk~fd~~~~~~k~~k~~- 78 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF--GKNFDIYSPKEKQEKEN- 78 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccCccccccccc-
Confidence 577888888888899998775 43322 111 2369999999888877654443333 22211111110000000
Q ss_pred CCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCc
Q 009268 271 ERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE-IGGE 349 (538)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 349 (538)
...+.+....+.+|++..|...+.+...-.... ....+.+..... ..+.
T Consensus 79 ----------------------------~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V--~p~t~~~~~~~~~~s~~ 128 (267)
T PF07672_consen 79 ----------------------------STLSKKPSYKSILKEKETWKWILIYGIWLVVVV--FPFTPSWFNILIWISPA 128 (267)
T ss_pred ----------------------------ccccccchHHHHHccchHHHHHHHHHHHheeEE--EeccchhHhHhhhcCcc
Confidence 122233567889999998876665544322111 111112222110 0001
Q ss_pred CCC----cchh----hhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHhhccCc--hHHHHH
Q 009268 350 YLS----VKTA----GNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFM-----YAAIPSMLLYRTYGSV--SQTVNI 414 (538)
Q Consensus 350 g~~----~~~~----g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~ 414 (538)
+.+ .... .....++..+..+|.+..|...+.--+||..+.... +..+..++.+...... ......
T Consensus 129 ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~ 208 (267)
T PF07672_consen 129 NIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFY 208 (267)
T ss_pred cccccccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 110 1111 112222233333555555666554333443332221 2222222211111111 234455
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
+..++.|++.-+.++.....- .+. ...+++..|...|+...++++.-.+.-.+...+.
T Consensus 209 I~~Fl~G~f~WgiQ~ViL~lP-hEy-----K~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i~ 266 (267)
T PF07672_consen 209 IFGFLAGFFLWGIQGVILNLP-HEY-----KGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVIA 266 (267)
T ss_pred HHHHHHHHHHHhhhHHHhcCh-hhh-----cCCCcceehhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666667776656555544332 222 2223578899999888888887777766655543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00023 Score=71.16 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=103.8
Q ss_pred HHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHh----HHHHH-HHHHHHHHHHHHHHHhhcc-CchH
Q 009268 337 LPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLK----ARATT-AATFMYAAIPSMLLYRTYG-SVSQ 410 (538)
Q Consensus 337 ~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~----~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 410 (538)
...|+++. +|+++.+...+.....+-..+ .++.|.++|-+. |||.. +++.++..+..+.+..... ..+.
T Consensus 12 ~~~~l~~~----l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 12 IYPFLKDD----LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 34566666 699999888777766665544 788999999873 44444 4444444333333322211 1234
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 411 TVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
....+++++..++....-...-..+.|....++ +.+|...+.+.....+|+.++..+.|.+.+. +++..|.+.
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p------~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREP------ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC------chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 444455555556555555566666666554322 4488889999999999999999999999998 888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 009268 490 MVGALIAGLLLSRLVI 505 (538)
Q Consensus 490 ~~~~~~~~~~~~~~~~ 505 (538)
+.+..+..+..+++..
T Consensus 161 ~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 161 AALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7777766555554443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00091 Score=66.75 Aligned_cols=118 Identities=12% Similarity=0.233 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh-hhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAG-HLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
++|+ ..+.+...+...+...+++++.. .+...+|-|+++.+|+..-.+..+..+++ ++.|+++....
T Consensus 272 f~w~-------~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~v 339 (463)
T KOG2816|consen 272 FGWN-------KKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAGV 339 (463)
T ss_pred cCcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHHH
Confidence 8898 89999888888888888888877 78888999999999999999999999999 99999999998
Q ss_pred HHHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
+.++. ....|+..++++.+..++++|+++++......+..+++|.+-+.+.
T Consensus 340 ~~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 340 VVALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 88765 5777999999999999999999999999999999999998877665
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=70.67 Aligned_cols=111 Identities=14% Similarity=0.258 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHhccccccc----hhHHHHHHHHHHHHhhhccCchhhhhhhhcccccC---ccchhhHHHHHHH
Q 009268 138 LFLTTGMVGSGIFVGLFGMGYFLDI----HAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKR---KRGLIMGVWNAHT 210 (538)
Q Consensus 138 ~~l~~~~~~~~i~~~~~~~a~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 210 (538)
|.++++.+++.+|.++..++..+.. .+.+.++++..+.++|.|+.-|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 5678888899999988555421111 12367889999999999999999999999999875 4677888999999
Q ss_pred hhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHh
Q 009268 211 SVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYL 249 (538)
Q Consensus 211 ~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~ 249 (538)
++|..++..+.+++. ++||.+.|.+.++..++. ++.+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~-~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLA-LIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHH-HHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHH-HHHHH
Confidence 999999999988888 689999999988876664 33333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-05 Score=54.67 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGS 147 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~ 147 (538)
.|++ +.|+|.+.++..+...++++++|.++||+++++.++....+.
T Consensus 30 ~Gl~-------~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLS-------PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 6888 999999999999999999999999999999999877765543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0055 Score=60.51 Aligned_cols=186 Identities=18% Similarity=0.144 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH--
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY-- 393 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-- 393 (538)
.+.+....++..+..-....-.|.++.+. +.-+..-.+.....-.+..++.+...|...||..|.+........
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i----~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISI----FPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 45677888888888888888899999988 444555566666667778888888999999999887664433222
Q ss_pred --HHHHHHHHH--hhccCc---hHH---HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHh
Q 009268 394 --AAIPSMLLY--RTYGSV---SQT---VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTG 463 (538)
Q Consensus 394 --~~~~~~~~~--~~~~~~---~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 463 (538)
.++.+.+++ ...... +.+ ..++...+.|.............+.++--..-. ..+++.....++.+.-+-
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~~NA~mRRID 158 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALARMNATMRRID 158 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHHHHHHHHHHH
Confidence 111222221 111111 112 112222222322222111111111111110000 122466677777777777
Q ss_pred HHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHHHhhh
Q 009268 464 SVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRLVIA 506 (538)
Q Consensus 464 ~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (538)
.+...++|.+.|.+.+. ++..+..+.++..+++..+-+++..+
T Consensus 159 L~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 159 LFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999996 88888888888888887776665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=62.64 Aligned_cols=109 Identities=24% Similarity=0.161 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhh-hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc----c
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTL-FDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY----G 406 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----~ 406 (538)
......|-+..+...+. ..+....-+.... +.+...+|.....+.-++-+|........=...+..+.+.... .
T Consensus 261 VTLsiFPg~~~~~~~~~-~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~ 339 (406)
T KOG1479|consen 261 VTLSIFPGFCSEVKSSG-LLGDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVV 339 (406)
T ss_pred eeeEecchhhcccccCc-ccchhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCce
Confidence 33445677776652111 1122233334444 7778888877766665543333333333334444444433221 1
Q ss_pred CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCC
Q 009268 407 SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGT 441 (538)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 441 (538)
..+.++.+...+++|+..|-.......+.++.+++
T Consensus 340 ~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~ 374 (406)
T KOG1479|consen 340 FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKP 374 (406)
T ss_pred ecCchHHHHHHHHHHhccchHhhheehhcCCCCCh
Confidence 24556777888888998887777777777777766
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=63.50 Aligned_cols=133 Identities=17% Similarity=0.036 Sum_probs=88.2
Q ss_pred HHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccC---chHH
Q 009268 335 YWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGS---VSQT 411 (538)
Q Consensus 335 ~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 411 (538)
.-+..|.++. || +...+-+...++.+..++..+.+-|+.||+|-|....++..+.+++..+=...... +..+
T Consensus 65 a~i~n~~~~~----Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~ 139 (480)
T KOG2563|consen 65 APINNYVNSF----YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFR 139 (480)
T ss_pred hhHHHHHHHH----hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccch
Confidence 3445566666 68 66677788888999999999999999999999999999988888877664432222 2223
Q ss_pred --HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 412 --VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 412 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.......+.+...-.......-....-+++ ++|+++..+..+...+|.+++-.+...+...
T Consensus 140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~--------~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP--------DQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhhhHHhHHHHHHhhhHhhccccHHHHhhCCc--------chhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 333333333333222222212223334554 7788888888888888888887777766654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0059 Score=62.34 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH-H-HHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFM-Y-AAIP 397 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~-~-~~~~ 397 (538)
.+..++.+++...+.......+... +|-+....+.+.+.+.++..+|+.+++++.++..++....-..+ + ..+.
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~----~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~ 95 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYL----LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLS 95 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555 58888888888899888999999988887644333322111111 1 1111
Q ss_pred HHHHHhhcc--CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHH
Q 009268 398 SMLLYRTYG--SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTG 475 (538)
Q Consensus 398 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g 475 (538)
..++..... ...........++.++..|+..|...-....... +..|...|-..+...+|+++|..+.+
T Consensus 96 ~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~---------~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 96 ALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD---------QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 111111100 0111222334455677777777766665543221 23456677788889999999999988
Q ss_pred Hhhcc--CchHHHHHHHHHHHHHHHHH
Q 009268 476 FLSTQ--GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 476 ~l~~~--g~~~~~~~~~~~~~~~~~~~ 500 (538)
++.-. |...+.++.+.+.++++++.
T Consensus 167 ~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 167 FLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 87654 66655555555555544443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0043 Score=60.17 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=109.1
Q ss_pred HHHHHHHHhhhcccCCcCCCcchhhhhhhh-hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHH
Q 009268 333 FLYWLPFYLSQTEIGGEYLSVKTAGNLSTL-FDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQT 411 (538)
Q Consensus 333 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (538)
...++..|+.+.. +|++..+...-..+ ..=..++..+....+.|.++.|..+++..+...+...++.+ ..+..
T Consensus 22 sEPfl~~yL~~~~---kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~---~~sv~ 95 (412)
T PF01770_consen 22 SEPFLTPYLTGPD---KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF---GTSVL 95 (412)
T ss_pred CCccchHHHcCCc---cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HCcHH
Confidence 4556777777642 48887776543332 33345555677888999999998888777766665555544 36777
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---CchHHHHH
Q 009268 412 VNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GWDAVFIM 488 (538)
Q Consensus 412 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~~~~~~~ 488 (538)
.+-+.-++.|+..+. -...++++-..+++ +..-++.+.......+|..++..++-.+... +|....++
T Consensus 96 ~mq~~q~~yg~~~a~-evay~sYiys~v~~--------~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i 166 (412)
T PF01770_consen 96 AMQLMQFFYGLATAA-EVAYYSYIYSVVDK--------EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI 166 (412)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHheeecCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777888888887654 34444555555554 6666888888888888888888887777664 77777777
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 009268 489 LMVGALIAGLLLSRLVIAE 507 (538)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~ 507 (538)
......++.++.+++.+++
T Consensus 167 sl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 167 SLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7776777676666665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0024 Score=65.12 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=83.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHH---HHHHHHHHhccccccchhH-HHHHHHHHHHHhhhcc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVG---SGIFVGLFGMGYFLDIHAF-GFYLIMQMVAGLFQAT 181 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~---~~i~~~~~~~a~~~~~~~~-~~l~~~r~l~G~~~g~ 181 (538)
..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-+.+ .+++..+..... .....+ ..++..-++.|+..|+
T Consensus 49 ~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~l~G~ 126 (521)
T PRK03612 49 VTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAF-AFQGLSRLLLYVLVLLIGLLIGM 126 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999988744333322 111111 111111111110 000111 2233445567888888
Q ss_pred CchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHH
Q 009268 182 GWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL--DYGWGWSFILPGASIVMGGIIV 247 (538)
Q Consensus 182 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~~gwr~~f~~~~~~~~~~~~~~ 247 (538)
..|....+..+.. .++-+...|-.+....+|+++|.++.+++. .+|-....++.+.+.++.+++.
T Consensus 127 ~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 127 EIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8888777665532 224567789999999999999999988776 4675555555555555544433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.016 Score=48.46 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=78.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhh
Q 009268 359 LSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSAD 438 (538)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 438 (538)
-.++......++.++.+.+.+++|.|+.++++.+...+-....+ ..+.+..+....+.|++.+..+.....++.+.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~----~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF----YPNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 34445556667778889999999999998888776654333322 24566777788889999988888888887766
Q ss_pred cCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 439 LGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 439 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
..+ +.+++-.|+...+...+..+|..+.-.+
T Consensus 118 s~~--------~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 118 STE--------ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CCH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 7778888888888888877777664433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.02 Score=52.94 Aligned_cols=72 Identities=8% Similarity=0.019 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWF 194 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 194 (538)
.+..+.+.++.+.+..++|-|..+.++...+...-..--. +.+..++-.-...|+|.+..+..--+++++.-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc------hhHHhhccHHHhhccccccccccCcceecHHH
Confidence 3444555666669999999999999999888765443333 78899999999999999998887777666543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.34 E-value=3.7e-05 Score=78.53 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh--c
Q 009268 328 LVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT--Y 405 (538)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~ 405 (538)
....++....-.-++.+ ++++..++|++.+.+-++.++..++..++.+|..|-|.+..+.++++++.+++..- .
T Consensus 16 ~~~~g~~~~~lttiErR----F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERR----FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence 44444444444455666 79999999999999999999999999999999888788888888777776665321 0
Q ss_pred -c------Cc--------------------------------------hHHHHHHHHHHHHHhhccchhhHHHHHHhhcC
Q 009268 406 -G------SV--------------------------------------SQTVNIVLMMVAGLFVNGPYALITTAVSADLG 440 (538)
Q Consensus 406 -~------~~--------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 440 (538)
. .. ....+++..++.|++....++...+++-+.++
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 0 00 01233445567788877788888888877777
Q ss_pred CCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhc
Q 009268 441 THSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479 (538)
Q Consensus 441 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 479 (538)
+ +..+...|+..++..+|-++|-.+++...+
T Consensus 172 ~--------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 172 K--------KNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---------------------------------------
T ss_pred c--------ccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 5 777888899888888888888777776653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.045 Score=51.70 Aligned_cols=153 Identities=25% Similarity=0.352 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhhcccCCcCCCc--chhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 328 LVAYTFLYWLPFYLSQTEIGGEYLSV--KTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~~g~~~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
..........+.+..+. +.+. ...++......+...++.++.|.+.||.|||+....+........+......
T Consensus 16 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTL-----SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HhcchHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33444445566666665 4443 4678888888888888889999999999988766666554233322222211
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHh-HhHHHHHHhHHHHHHhhcc---C
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDG-TGSVGAALGPLLTGFLSTQ---G 481 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~i~~~~~g~l~~~---g 481 (538)
....+...+.....|++.+...+.....+.+..+. . +.++...+.... ...++..++|.+.+.+... +
T Consensus 91 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (338)
T COG0477 91 -NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A------TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162 (338)
T ss_pred -cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12344445555557777777777788888777652 0 367777888777 5777888888777766654 6
Q ss_pred chHHHHHHHHHH
Q 009268 482 WDAVFIMLMVGA 493 (538)
Q Consensus 482 ~~~~~~~~~~~~ 493 (538)
|+..|.......
T Consensus 163 ~~~~~~~~~~~~ 174 (338)
T COG0477 163 WRAAFLLAALLG 174 (338)
T ss_pred hHHHHHHHHHHH
Confidence 776554444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=64.55 Aligned_cols=163 Identities=13% Similarity=0.176 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh--c----
Q 009268 332 TFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT--Y---- 405 (538)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~---- 405 (538)
++....-.-+++. ++++..+.|++.+.+-++..+......+...|..|-+++-.+.++++++.++...- .
T Consensus 114 ~y~~s~IttiErR----F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y 189 (735)
T KOG3626|consen 114 GYFNSVITTIERR----FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPY 189 (735)
T ss_pred hhhhhhhhhhhhh----cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcc
Confidence 5555555566677 79999999999999999999999999999999988888888888887777665431 0
Q ss_pred -----c-------C---------------------------c-h--HH-HHHHHHHHHHHhhccchhhHHHHHHhhcCCC
Q 009268 406 -----G-------S---------------------------V-S--QT-VNIVLMMVAGLFVNGPYALITTAVSADLGTH 442 (538)
Q Consensus 406 -----~-------~---------------------------~-~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 442 (538)
. . . + .+ .+++..++.|++....++...+++-+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~- 268 (735)
T KOG3626|consen 190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK- 268 (735)
T ss_pred hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc-
Confidence 0 0 0 0 11 344556778888888888888888666664
Q ss_pred cccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--------------------CchHHHHHHHHHHHHHHHHHHH
Q 009268 443 SSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--------------------GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 443 ~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--------------------g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+......|+..++..+|-++|-.+++++... -|...|++.+.+.++..+..++
T Consensus 269 -------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 269 -------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred -------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778889999999988888888888776541 2445566677777776666666
Q ss_pred Hhhh
Q 009268 503 LVIA 506 (538)
Q Consensus 503 ~~~~ 506 (538)
+.+.
T Consensus 342 fPk~ 345 (735)
T KOG3626|consen 342 FPKE 345 (735)
T ss_pred Cccc
Confidence 6543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0042 Score=60.24 Aligned_cols=114 Identities=12% Similarity=0.150 Sum_probs=80.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHH--HHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVG--SGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~--~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
..+..+....|.+|-.++.--. .-+.-|++.+.+.+- ..+..++.+. +...++.|..++.-+..|+..|..+
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~----~~~rir~lwils~LQ~~nl~~~~l~s~--~~fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSL----PFFRIRRLWILSLLQVINLVFLLLQSW--YRFIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcce----eeeehhhHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHhhhHHH
Confidence 4566777777777766654332 222334444443332 2222222221 1112788999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
.-....+.|-.++++|..++|....+-++|..++.+++-.+.
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0063 Score=44.42 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 009268 326 AKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYR 403 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 403 (538)
.++.-+.++..+|...++. ++|..+++++.+...++.++|.+...++.++.++++.+..+.+...+..+.+..
T Consensus 4 mGigRFayTplLP~M~~~~-----~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADG-----GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhhHHHHHHhHhHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899888887 999999999999999999999999999999877777777777766665555443
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0074 Score=59.39 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCc------hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHH
Q 009268 385 ATTAATFMYAAIPSMLLYRTYGSV------SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI 458 (538)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 458 (538)
|.+.++.++..++.+++....... .....++.+.+.+++.|+.=+...+...+.+++++ ++.+.+.+.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-----~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-----DSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-----TTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-----hhhhhhhHHH
Confidence 455666666666666643322111 22456777778899999999999999999998753 3677788999
Q ss_pred HHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 459 IDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 459 ~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+....++|..++..+.+++.+. +|...|.+.++..+++.+.++.
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999988 9999999988888877665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.099 Score=52.44 Aligned_cols=147 Identities=12% Similarity=-0.035 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCC-----CcchhhhhhhhhhhhhhhH-HHHHHHHHHHHhHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYL-----SVKTAGNLSTLFDVGGIFG-GIIAGYISDKLKARATTA 388 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~-----~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~~~~~~~~ 388 (538)
+++...+..|+..+.++..- -++|. .+. +.+...++.+...+.+.+. .++.+++++|++|++.+.
T Consensus 8 k~~~~~l~fF~il~~Y~iLR-----~lKD~----lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~ 78 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTILR-----DTKDT----LVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY 78 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhh----eeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence 34455555555544443332 33444 333 3345555555544444444 788999999999998876
Q ss_pred HHHHHHHHHHHHHHhh-ccC-c--------------------------hHHHHHHHHHHHHHhhccchh-hHHHHHHhhc
Q 009268 389 ATFMYAAIPSMLLYRT-YGS-V--------------------------SQTVNIVLMMVAGLFVNGPYA-LITTAVSADL 439 (538)
Q Consensus 389 ~~~~~~~~~~~~~~~~-~~~-~--------------------------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 439 (538)
...........++... .+. + +.|...+..+...+......+ .....+++..
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~ 158 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6555444433333221 110 0 112222222222333233344 3344555554
Q ss_pred CCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 440 GTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 440 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
.. ++..+.+++....+++|..+++.+..++.
T Consensus 159 t~--------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 159 TI--------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred CH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 77789999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0096 Score=57.68 Aligned_cols=148 Identities=16% Similarity=0.072 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH----HhHHHHHHHHH
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK----LKARATTAATF 391 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~ 391 (538)
........+...+++..-..+++.|+++. |.+....+.+....-+.+++.+++.|..+|| +||||..+...
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~l-----Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~ 108 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSL-----GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAG 108 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHc-----CCCcccccccccccccccceecccccccccccccccccccchHHHh
Confidence 34445555666667777788999999998 9999999999999999999999999999997 68888877666
Q ss_pred HHHHHHHHHHHhhc--------cCchH--HHHHHHHHHHH-----HhhccchhhHHHHHHhhcCCCcccccccchhHH-H
Q 009268 392 MYAAIPSMLLYRTY--------GSVSQ--TVNIVLMMVAG-----LFVNGPYALITTAVSADLGTHSSVRGDSRALAT-V 455 (538)
Q Consensus 392 ~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 455 (538)
.+.....+.+..+. ..... ....+.+++.| +.....+.+.-+...+...+ +.+.+ +
T Consensus 109 s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~--------d~~~~~A 180 (498)
T KOG0637|consen 109 SLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG--------DAKKTRA 180 (498)
T ss_pred hHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC--------hhhhhcc
Confidence 65554444332211 01111 11122233333 44556677777888777765 22333 7
Q ss_pred HHHHHhHhHHHHHHhHHHHHH
Q 009268 456 TAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 456 ~g~~~~~~~~g~~i~~~~~g~ 476 (538)
.+....+..+|+.+|-.+.++
T Consensus 181 ns~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 181 NSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred chhHHHHHHhcceeeeecccc
Confidence 888888888888887666553
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0012 Score=62.77 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=3.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHhhcc--------CchHHHHHHHHHHHHHhhccc
Q 009268 358 NLSTLFDVGGIFGGIIAGYISDKLKARATTAATFM--YAAIPSMLLYRTYG--------SVSQTVNIVLMMVAGLFVNGP 427 (538)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~ 427 (538)
..+..++++-.+|+.+.++..-+..+++.+.+..+ +..+..+++....+ -.+.++.++..+++|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667899999999988875322112333222211 12222223221110 124455667778889888887
Q ss_pred hhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 428 YALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
........++.++++ ++..+-.+..++-.+|-.+|..+
T Consensus 266 ~tl~m~~~p~~v~~~--------e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPE--------ERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH-----------------------------------------
T ss_pred hhceeeeCCCcCCHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777653 33333444444455555555544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.91 Score=44.11 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL 381 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 381 (538)
+..++..+........+.+..+.|..+. .+.+. +-.......+.+.+..++.-.+--+.
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~----~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRF----PGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhc----CCCch--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566666666666555 34444 33333334444444444444443333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.2 Score=51.77 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Q 009268 322 CLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARATTAATFMYAAIPSML 400 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~ 400 (538)
.-.+...+++++...+..|+... ++.+...+.-....+........+++++++|-+ ||.+.+.++..+..++.++
T Consensus 45 ~e~~e~~a~~g~~~nlv~ylt~~----~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~ 120 (571)
T KOG1237|consen 45 NEVLERLAFFGLVSNLVTYLTLE----LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFG 120 (571)
T ss_pred HHHHHHHhHhcchhHHHHHHHHH----hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777778888877 677776666676777777777788999999986 7777777766666555443
Q ss_pred HHhhc------c-------C------ch---HHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHH
Q 009268 401 LYRTY------G-------S------VS---QTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAI 458 (538)
Q Consensus 401 ~~~~~------~-------~------~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 458 (538)
+.... + . .+ ...+...+.+..++.++.-+.....-.+.++... +.+++....-+.+
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~--~~~~~~~~~fFnW 198 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELD--PVEVKGIPSFFNW 198 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccC--cchhhCcccchhH
Confidence 32110 0 0 01 1133344455566777888888888888887311 1112444577888
Q ss_pred HHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHHH
Q 009268 459 IDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 459 ~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 502 (538)
..+..+.|..++-.+.-++.+. +|...|.+..++.+++.++++.
T Consensus 199 ~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 199 FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 8888999999999998888777 9999998888888776666543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.35 Score=48.13 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhhhhhh---hhcCChhhHHHHHHHHHHHHHHHhccccc-------------cchhHHHHHHHHHHHHhhh
Q 009268 116 FLACYSVGMFVAGHLG---DTLDLRLFLTTGMVGSGIFVGLFGMGYFL-------------DIHAFGFYLIMQMVAGLFQ 179 (538)
Q Consensus 116 ~~l~~~~~~~~~G~l~---dr~Grr~~l~~~~~~~~i~~~~~~~a~~~-------------~~~~~~~l~~~r~l~G~~~ 179 (538)
..++..+++.+.+.+. +++||++.+.++.++..++.++.-...-. ..+++...++.-++.|++-
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 3344444455555555 45799999999999888888777654210 0124667888889999999
Q ss_pred ccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH
Q 009268 180 ATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225 (538)
Q Consensus 180 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 225 (538)
+......+.++++.+ +++|..+.++...-..++..++-.......
T Consensus 368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999 568999999988888888877655554433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=49.06 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHH------hcccc-ccchhHHHHHHHHHHHH----hhhccCchhh
Q 009268 118 ACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLF------GMGYF-LDIHAFGFYLIMQMVAG----LFQATGWPSV 186 (538)
Q Consensus 118 l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~------~~a~~-~~~~~~~~l~~~r~l~G----~~~g~~~~~~ 186 (538)
....+..++.|...|+..|+|++...+++.-++..++ .+..- ....+++.+..+-++.- ++.=....-.
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3445667788999999999999888776543333333 23210 00024444444333322 2221111222
Q ss_pred hhhhhccc----ccCccch---hhHHHHHHHhhhHhHHHHHHHHHHHh-CchHHHHHHHHHH
Q 009268 187 VAVIGNWF----GKRKRGL---IMGVWNAHTSVGNISGSLLAASVLDY-GWGWSFILPGASI 240 (538)
Q Consensus 187 ~~~i~~~~----~~~~r~~---~~~~~~~~~~~g~~ig~~l~~~l~~~-gwr~~f~~~~~~~ 240 (538)
..+-.||. ..+.+.. ..+.....-.....+.|.+.|.+..+ +-|..-...++-.
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~ 215 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWA 215 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHH
Confidence 22335554 2223333 33555555556678889888887743 4555444333333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.6 Score=39.72 Aligned_cols=147 Identities=17% Similarity=0.142 Sum_probs=80.3
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHH----HHHHHH--HHHHHHHHHHhhccCchHHHHHHHHHHHHH
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARAT----TAATFM--YAAIPSMLLYRTYGSVSQTVNIVLMMVAGL 422 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 422 (538)
.|-+..+.+.+.+.+-..+-+|+.+.-++.|.--.-+. ...+.+ +.+....+.+......+.+.......++|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 35566677777776666666777776666554221111 111111 111222212222223356667777888999
Q ss_pred hhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHHHHHHH
Q 009268 423 FVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALIAGLLL 500 (538)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~ 500 (538)
..+.=.|..+.+...... +. ....+.....-++|+..+..+..++.-. |..-.-...+.+-++++++.
T Consensus 118 LVG~EiPL~mrml~~r~a---------~~-k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~ 187 (508)
T COG4262 118 LVGAEIPLLMRMLQRRQA---------KA-KDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVT 187 (508)
T ss_pred HHhcchHHHHHHHHHHHH---------HH-HhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Confidence 888888888888876332 11 1222333344778888887777776544 54444444555555555544
Q ss_pred HHHhh
Q 009268 501 SRLVI 505 (538)
Q Consensus 501 ~~~~~ 505 (538)
+++.+
T Consensus 188 ~fllr 192 (508)
T COG4262 188 LFLLR 192 (508)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.62 Score=46.61 Aligned_cols=114 Identities=12% Similarity=0.030 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCCh-hhHHHHHHHHHHHH---HHHhccc---c-ccchhHHHHHHHHHHHHhhhcc
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLR-LFLTTGMVGSGIFV---GLFGMGY---F-LDIHAFGFYLIMQMVAGLFQAT 181 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr-~~l~~~~~~~~i~~---~~~~~a~---~-~~~~~~~~l~~~r~l~G~~~g~ 181 (538)
-.+...|.++-.+|..+..+.. .-++| +.+.+..++-.+.. ++|..-. . ...++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3456777777777777554321 11222 13333333332222 2332210 0 0124667777889999999999
Q ss_pred CchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHH
Q 009268 182 GWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASV 224 (538)
Q Consensus 182 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 224 (538)
....+..+..+..+++||..+-.+...+..+|..+|..++..+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999888776544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.1 Score=42.24 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=57.3
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHH-----HHHHHHHhccccccchhHHHHHHHHHHHHhhhc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGS-----GIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQA 180 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~-----~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g 180 (538)
--|.+++.+.|...+.+|+...-++.|---.-+.+..-.++. ++..+-..|+. ...++-+.+++.-++.|.-.|
T Consensus 42 Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~-~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 42 ILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFAL-ESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred eeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999988887543332222222221 11111112220 112467788889999999999
Q ss_pred cCchhhhhhhhc
Q 009268 181 TGWPSVVAVIGN 192 (538)
Q Consensus 181 ~~~~~~~~~i~~ 192 (538)
+..|....++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999999988876
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.18 Score=45.39 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=78.6
Q ss_pred cCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccch
Q 009268 349 EYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPY 428 (538)
Q Consensus 349 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 428 (538)
||+...+.|.++.......++...+.|-++||.|||+..+...+.-.++++-= ..+.....++.-.+-|+.....+
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK----hSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK----HSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh----cCCceEEEeehhhhhhHHHHHHH
Confidence 68999999998888777778888899999999999987654444333322211 11222223333445555555555
Q ss_pred hhHHHHHHhhcCCCcccccccchhHHHHHHHH-hHhHHHHHHhHHHHHHhhcc---CchHHHHHHHHHHHHHHHHHH
Q 009268 429 ALITTAVSADLGTHSSVRGDSRALATVTAIID-GTGSVGAALGPLLTGFLSTQ---GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~~~~~g~l~~~---g~~~~~~~~~~~~~~~~~~~~ 501 (538)
...-++...+-...+.++ .+-....++=.. +...+-.+++...+-.+.|. |....|-..+.+..++..+.+
T Consensus 143 SaFEsWliaEHnekr~Fe--qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKRGFE--QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHHHHHHHHhhhccCCh--HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 554444433221111111 122222222111 22234445555555556665 666777766665555554443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.8 Score=41.46 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH-----HHhHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD-----KLKARATTAA 389 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~~ 389 (538)
.+..+.+.+...+....... .+|..++.. |.|-++.+.....+.--. -.++...+.| |+||||..++
T Consensus 32 ~illLl~LYllQGiP~GL~~-~iP~lL~ak-----~vSyt~~a~fS~ay~P~s--LKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIG-AIPLLLQAK-----GVSYTSQAIFSFAYWPFS--LKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hHHHHHHHHHHcCCchhHhh-hhHHHhcCC-----CcchhhhhhhhhhhhHHH--HHHHHHhhhHHHHHHhhccccceee
Confidence 34555555666655554444 889998866 788777666544433211 2456666777 9999987654
Q ss_pred H
Q 009268 390 T 390 (538)
Q Consensus 390 ~ 390 (538)
-
T Consensus 104 p 104 (510)
T KOG3574|consen 104 P 104 (510)
T ss_pred e
Confidence 3
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.38 E-value=17 Score=36.45 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhh-hhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 009268 314 PGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDV-GGIFGGIIAGYISDKLKARATTAATFM 392 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~ 392 (538)
+++..+.+..++..+.+...- -++|...-+ ..+++...++-...-+ ++++..++..++.+++.+.++..+...
T Consensus 27 ~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 27 KKFLPLALLFFCILFNYNLLR-----SLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345555555555544443322 233331000 2344555555444444 566777888899999888887665544
Q ss_pred HHHHHHHHHHhh-cc-----C-------------c----------hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCc
Q 009268 393 YAAIPSMLLYRT-YG-----S-------------V----------SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHS 443 (538)
Q Consensus 393 ~~~~~~~~~~~~-~~-----~-------------~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 443 (538)
......+++... .+ + + +.|.........-+-.....+.+....+.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt-- 178 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT-- 178 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 443333332211 10 0 0 012212222221222222333333334444443
Q ss_pred ccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 444 SVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 444 ~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.++..+.+++.+...+++..++..+..++.+.
T Consensus 179 -----~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 179 -----IEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred -----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47778999999999999999999998888774
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=8 Score=37.16 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH--
Q 009268 316 VIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY-- 393 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-- 393 (538)
...+..++++..+..-....-...|+.+. .|-+...++....+-+...++...+.|...|+..|+|.+.....+
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L----~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqN 104 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILL----GGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQN 104 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHH----cCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhcc
Confidence 34455666666666666666667777777 465566666666666677777778888889999888775543322
Q ss_pred ---HHHHHHHHHhhccC----chHHHHHHHHHHHHHhhccchhhHHHHHHhh-cCCC-cccccccchhHHHH---HHHHh
Q 009268 394 ---AAIPSMLLYRTYGS----VSQTVNIVLMMVAGLFVNGPYALITTAVSAD-LGTH-SSVRGDSRALATVT---AIIDG 461 (538)
Q Consensus 394 ---~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~---g~~~~ 461 (538)
+..+.+++..+... .+.++...++++... .+...... +..... +..+ .-.-.+.+.++... +....
T Consensus 105 lSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~-i~aI~~La-s~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~ 182 (503)
T KOG2601|consen 105 LSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANL-IAAIAVLA-SLAGTILIERDWVVVMSEGESPSVLTNMNATIRG 182 (503)
T ss_pred HHHHHHHHHHhhheeecchhcccccHHHHHHHHHHH-HHHHHHHH-HhhheEEecccEEEEecCCCCHHHHhhcchhhhh
Confidence 11122222211111 122333333322222 22211111 111111 1000 00000123333333 55555
Q ss_pred HhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHH
Q 009268 462 TGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLL 499 (538)
Q Consensus 462 ~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~ 499 (538)
.-.....+.|.+.|.+... +.+..-..+++...+...+
T Consensus 183 iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~ 221 (503)
T KOG2601|consen 183 IDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV 221 (503)
T ss_pred hhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence 6667788999999999888 6666555555555554433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.2 Score=42.53 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhh---hhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTL---FDVGGIFGGIIAGYISDKLKARATTAATF 391 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~---~~~~~~~~~~~~g~l~dr~~~~~~~~~~~ 391 (538)
.++.+.+++.+........-+|..+++.. .+.+-.+.+..... +.+=-+=+.++=....+|+||||..++-.
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~---~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~ 77 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMA---KKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI 77 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhcccc---CCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence 34556666666665554567898998821 25666666654332 22222222233344455789998766543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.06 E-value=48 Score=33.85 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHHHHHH
Q 009268 415 VLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGA 493 (538)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~ 493 (538)
+..+..|+.....-...-..+.+.+|+ ++.....+|-.+....+...+...+++.+.+. ||..+..+.-++.
T Consensus 287 ~lvi~Ygi~inLvE~~wK~~lk~~~~~-------~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 287 LLVIAYGISINLVEVVWKSQLKQLYPD-------PNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence 334455666665555555666666665 35555666666666666556666677777777 8887766654444
Q ss_pred HHHH
Q 009268 494 LIAG 497 (538)
Q Consensus 494 ~~~~ 497 (538)
+++.
T Consensus 360 lit~ 363 (491)
T PF03219_consen 360 LITG 363 (491)
T ss_pred HHHH
Confidence 4433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.11 E-value=5.8 Score=30.06 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc
Q 009268 449 SRALATVTAIIDGTGSVGAALGPLLTGFLSTQ 480 (538)
Q Consensus 449 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 480 (538)
.+.++.+.++-...-.+++++-....|++.|+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~ 68 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDK 68 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888889999888999999998
|
|
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.86 E-value=38 Score=30.97 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009268 319 FAFCLFFAKLVAYTFLYWLPFYLSQT 344 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (538)
+.+.........|+.+..=..|.++.
T Consensus 183 vG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 183 VGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred HhHHHHHHHHHHHhcccchHHHHHhC
Confidence 34444444556667666667777776
|
The region concerned is approximately 280 residues long. |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.61 E-value=0.17 Score=45.30 Aligned_cols=155 Identities=8% Similarity=-0.028 Sum_probs=77.1
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH-
Q 009268 307 LFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARA- 385 (538)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~- 385 (538)
+..-+++-.+..+.+.+.+.-.....-..+++.|..+. ..++...-.++-.+..++....+.+-.-+- +-|+|+
T Consensus 194 W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfvidd----lqm~qsakAllP~v~Yl~SF~VS~v~~eip-wngkrlK 268 (412)
T KOG4830|consen 194 WTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDD----LQMEQSAKALLPMVAYLSSFSVSMVNSEIP-WNGKRLK 268 (412)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeeh----hhHHHHHhhhhHHHHHHhhhhHHhhcccCC-cCcceee
Confidence 34445555566677777777666666677788777766 466655555555555554444333322111 112222
Q ss_pred -HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhH
Q 009268 386 -TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGS 464 (538)
Q Consensus 386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 464 (538)
....+.++...++..+... +......++....+.|+................+..+ .+..+...|-.+++-.
T Consensus 269 ayYsaGgiiwifcga~ilLl-pr~i~symyAisvfIGIAnAimlvtslsitavli~~~------~~~~aFv~GamSF~DK 341 (412)
T KOG4830|consen 269 AYYSAGGIIWIFCGAVILLL-PRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKN------TESGAFVYGAMSFFDK 341 (412)
T ss_pred eeeecccHHHHHhhhheeec-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cCCceEEEehHHHHHh
Confidence 2223333333333333221 1222333445555667766555444444444444332 2444555666666666
Q ss_pred HHHHHhHHH
Q 009268 465 VGAALGPLL 473 (538)
Q Consensus 465 ~g~~i~~~~ 473 (538)
+...++-.+
T Consensus 342 lS~GiA~~l 350 (412)
T KOG4830|consen 342 LSNGIAYQL 350 (412)
T ss_pred hcccHHHHH
Confidence 665555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 1pw4_A | 451 | Crystal Structure Of The Glycerol-3-Phosphate Trans | 2e-14 |
| >pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter From E.Coli Length = 451 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-108
Identities = 95/494 (19%), Positives = 180/494 (36%), Gaps = 77/494 (15%)
Query: 27 SLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVG 86
+ R+ I L F YA Y+ RK ++ L
Sbjct: 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ----------------------- 57
Query: 87 LDRNVSTAKGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVG 146
G+ LG Y F+ G + D + R+FL G++
Sbjct: 58 ---------GFSR-------GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101
Query: 147 SGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVW 206
+ + G + + ++ + G FQ GWP + +W+ +++RG I+ VW
Sbjct: 102 AAAVMLFMGFVPWA-TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 160
Query: 207 NAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYAN 264
N +VG LL + W + +P ++ + + + P+ G
Sbjct: 161 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL---- 216
Query: 265 DPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF 324
P E ND + + + + + + A
Sbjct: 217 ---PPIEEYKNDYPDDYNEKAEQEL-----------TAKQIFMQYVLPNKLLWYIAIANV 262
Query: 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--K 382
F L+ Y L W P YL + ++ ++ + L++ GI G ++ G++SDK+
Sbjct: 263 FVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 318
Query: 383 ARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTH 442
R T FM + ++Y + + TV+++ M+V G + GP LI G H
Sbjct: 319 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI--------GLH 370
Query: 443 SSVRGDSRALATVTAIIDGTGSVGAAL-GPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLL 500
+ +A T G +G ++ + G+ GWD F++++ G+++A +LL
Sbjct: 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430
Query: 501 SRLVIAEITEKIRR 514
++I E + +
Sbjct: 431 IVVMIGEK-RRHEQ 443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 72/527 (13%), Positives = 137/527 (25%), Gaps = 170/527 (32%)
Query: 1 MAG-----------NSDTVRQTPP-GILLIRKIRGKDW-SLTTYRYIILLITFIAYACYH 47
+ G S V+ I W +L ++ + Y
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF---------WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 48 ASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVG----LDRNVSTAKGWDPFNG- 102
+S L+ + + + + L NV AK W+ FN
Sbjct: 209 IDPNWTSRSDH-SSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLS 265
Query: 103 -----THGTSKLGEIDLAFLACYSVGMFVAGHLGDTLD----LRLFLTTGMVGSGIFVGL 153
T T D FL+ + H TL L L
Sbjct: 266 CKILLT--TRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLK------------ 309
Query: 154 FGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIG-----------NWFGKRKRGLI 202
+LD L +++ P +++I NW +
Sbjct: 310 -----YLDCRPQD--LPREVLTTN------PRRLSIIAESIRDGLATWDNW---KHVNC- 352
Query: 203 MGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262
+ T++ I SL +VL+ P M + L+ +P
Sbjct: 353 ----DKLTTI--IESSL---NVLE---------PAEYRKM-----FDRLSVFPPSA---- 385
Query: 263 ANDPIPSS--ERL-----PNDEESHMQK--GKTAAVENNSGIRYG---------SGSRTS 304
IP+ + +D + K + +
Sbjct: 386 ---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 305 VGLFQACLIPGVIPFAFCLF-FAKLVA--YTFLYWLPFYLSQTEIGGEYLSVKTAGNLST 361
L ++ + IP F Y + + + +L E
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTL------FRM 495
Query: 362 LF-DVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLL----YRTY-----GSVSQT 411
+F D F ++ K+ R + A +I + L Y+ Y +
Sbjct: 496 VFLD----F-----RFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 412 VNIV---LMMVAGLFVNGPYA-LITTAVSADLGTHSSVRGDS-RALA 453
VN + L + + Y L+ A+ A+ ++ ++ + +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAE---DEAIFEEAHKQVQ 588
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 42/381 (11%), Positives = 104/381 (27%), Gaps = 46/381 (12%)
Query: 122 VGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQAT 181
+ + G L D L LR +L + G + F + F + + + +V G++
Sbjct: 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS-IVGGIYLGF 116
Query: 182 GWPSVVAVIGNWFGK--RKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGAS 239
+ + + + K R+ G VG G+ + + + F L
Sbjct: 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGC 176
Query: 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGS 299
++ ++++ P A S+ L
Sbjct: 177 ALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL------------------------ 212
Query: 300 GSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNL 359
+ P + + + F + + GE + G +
Sbjct: 213 -------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ-GTRVFGYV 264
Query: 360 STLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMV 419
+T+ G + + + R + A + + + + +++
Sbjct: 265 TTM----GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---SALEVVI 317
Query: 420 AGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLST 479
+ + + VR + + +L G +
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ---LAMIFMSVLAGNMYE 374
Query: 480 Q-GWDAVFIMLMVGALIAGLL 499
G+ +++L + AL L+
Sbjct: 375 SIGFQGAYLVLGLVALGFTLI 395
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 12/186 (6%)
Query: 319 FAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYIS 378
F F FF + F P +L ++S G + + + + G +S
Sbjct: 15 FFFFYFFIMGAYFPFF---PIWLHDIN----HISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 379 DKLKARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSAD 438
DKL R + + NI++ + G G
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA 127
Query: 439 LGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGL 498
R + G VG ALG + G + T VF + ALI +
Sbjct: 128 F-IEKVSRRSNFEFGRARMF----GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAV 182
Query: 499 LLSRLV 504
LL
Sbjct: 183 LLFFAK 188
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.53 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.51 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.46 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.38 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=348.97 Aligned_cols=405 Identities=22% Similarity=0.419 Sum_probs=332.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.++.+|..+...+++.+..+++...+++..|.+.++ + ++ ..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~-~s-------~~ 62 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------------------------------G-FS-------RG 62 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------------------------------T-TC-------SS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------h-cc-------Hh
Confidence 456678888899999999999999999999999887 6 66 88
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHHHHHHhhhccCc
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGM----GYFLDIHAFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~----a~~~~~~~~~~l~~~r~l~G~~~g~~~ 183 (538)
+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSIAVMFVLLFLCGWFQGMGW 137 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-----SSSSHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999 8 899999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC-chHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG-WGWSFILPGASIVMGGIIVYLFLAAYPEDVGFP 261 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 261 (538)
+...+++.|++|+++|++++++...+..+|.++||++++++. .+| ||+.|++.+++.++..++.++.+||+|++....
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence 999999999999999999999999999999999999998866 678 999999999988887777778888877654332
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009268 262 YANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYL 341 (538)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (538)
..++...+.+. +. +++++ ++...+....++.+++|.++...+..++.....+.+..++|.|+
T Consensus 218 ~~~~~~~~~~~-------~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 218 PIEEYKNDYPD-------DY-NEKAE----------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp SCTTTCCC-------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred Chhhhcccccc-------cc-hhhhh----------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110000 00 00000 01111111246778889999999999999999999999999999
Q ss_pred hhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q 009268 342 SQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMV 419 (538)
Q Consensus 342 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (538)
++. +|++..+++.+.+...++.+++.++.|++.||+ ++|+.+..+..+.....+++.......+.+...+..++
T Consensus 280 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 280 KEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp TTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred HHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 997 699999999999999999999999999999999 99888877766665333333332222356666777778
Q ss_pred HHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHH-HHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHH
Q 009268 420 AGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV-GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAG 497 (538)
Q Consensus 420 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~ 497 (538)
.|++.+...+.....+.+.+|+ +.+|++.|+.+.+.++ |..++|.+.|.+.|. +|...|++.+++.+++.
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCT--------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhch--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888888888888888888886 8899999999999999 999999999999998 99999999888888877
Q ss_pred HHHHHHhhh
Q 009268 498 LLLSRLVIA 506 (538)
Q Consensus 498 ~~~~~~~~~ 506 (538)
++.++..++
T Consensus 428 ~~~~~~~~~ 436 (451)
T 1pw4_A 428 ILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 776655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=317.84 Aligned_cols=371 Identities=13% Similarity=0.090 Sum_probs=301.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccch
Q 009268 30 TYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKL 109 (538)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 109 (538)
+.++..+..+++.++...++....++..|.+.++ +|++ ..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~ 63 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA-------------------------------FTLT-------NFQA 63 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------SCCC-------SHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------cCCC-------HHHH
Confidence 3455566677777888888888888889998877 7888 9999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHH---hccccccchhHHHHHHHHHHHHhhhccCchhh
Q 009268 110 GEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLF---GMGYFLDIHAFGFYLIMQMVAGLFQATGWPSV 186 (538)
Q Consensus 110 g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 186 (538)
|++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++ ++++.+++.|+++|++.+...+..
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhH
Confidence 999999999999999999999999999999999999999999999 887 999999999999999999999999
Q ss_pred hhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-HhC--------------------------chHHHHHHHHH
Q 009268 187 VAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-DYG--------------------------WGWSFILPGAS 239 (538)
Q Consensus 187 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~g--------------------------wr~~f~~~~~~ 239 (538)
.++++|++|+++|++++++.+.+..+|.+++|++++.+. +.+ ||+.|++.+++
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 432 99999888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHH
Q 009268 240 IVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPF 319 (538)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (538)
.++..++.++ .++ |+..+.++ .++ ++++...++++++++|.++..
T Consensus 219 ~~~~~~~~~~-~~~-p~~~~~~~----~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 263 (438)
T 3o7q_A 219 VLLVALLIML-TKF-PALQSDNH----SDA-----------------------------KQGSFSASLSRLARIRHWRWA 263 (438)
T ss_dssp HHHHHHHHHH-CCC-CCCTTTCC----CCS-----------------------------STTSHHHHHHHHTTCSHHHHH
T ss_pred HHHHHHHHHH-HcC-Cccccccc----ccc-----------------------------cccchhhhHHHHHhChHHHHH
Confidence 6665443332 221 21111100 000 111223456788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009268 320 AFCLFFAKLVAYTFLYWLPFY-LSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPS 398 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 398 (538)
.+..++.......+..++|.| +++. +|++..+++.+.+...++.++++++.|++.||+++|+.+..+..+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999888888899999999999 8888 79999999999999999999999999999999999999888777766655
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhh
Q 009268 399 MLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLS 478 (538)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~ 478 (538)
+++.. ..+.+ ..+..++.|++.+..++.......+.+++ + ++.+.++.. ...+|+.++|.+.|.+.
T Consensus 340 ~~~~~---~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~-~~~~g~~~~~~~~g~l~ 405 (438)
T 3o7q_A 340 LISAF---AGGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ--------D-TKYGSSFIV-MTIIGGGIVTPVMGFVS 405 (438)
T ss_dssp HHHHH---CCHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG--------G-HHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc--------c-ccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence 54443 22333 34455778888888888888888888774 3 677777776 67799999999999999
Q ss_pred cc-C-chHHHHHHHHHHHHH
Q 009268 479 TQ-G-WDAVFIMLMVGALIA 496 (538)
Q Consensus 479 ~~-g-~~~~~~~~~~~~~~~ 496 (538)
|. + ++..|++.+++.++.
T Consensus 406 ~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 406 DAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHTSSGGGGHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHH
Confidence 98 7 998888765554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=316.88 Aligned_cols=440 Identities=12% Similarity=0.003 Sum_probs=299.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCcc
Q 009268 28 LTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTS 107 (538)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 107 (538)
.+++.|.+.+...++.+...+|...++.++|.+.+++..+ .+.+ .+.+..
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~---------------------------~~~~---~~~~~~ 55 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAP---------------------------QNLS---ESAANS 55 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGG---------------------------GCCC---HHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------------------CCCC---cccHHH
Confidence 3456677777777888888899999998888887653211 0000 111256
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhcccc-------------ccchhHHHHHHHHHH
Q 009268 108 KLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYF-------------LDIHAFGFYLIMQMV 174 (538)
Q Consensus 108 ~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~-------------~~~~~~~~l~~~r~l 174 (538)
+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++++.. ...+|+++++++|++
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999985200 001899999999999
Q ss_pred HHhhhccCchhhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH---------hCchHHHHHHHHHHHHHHH
Q 009268 175 AGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD---------YGWGWSFILPGASIVMGGI 245 (538)
Q Consensus 175 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---------~gwr~~f~~~~~~~~~~~~ 245 (538)
+|++.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++..+.. .+||+.+.+..+..++. +
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-L 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-h
Confidence 9999999999999999999999999999999999999999999888877652 24777777777666654 6
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHH-
Q 009268 246 IVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLF- 324 (538)
Q Consensus 246 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (538)
+..+++||+|++...+.++++..+..++...++...++..+..... ...++.......++.++........+
T Consensus 215 ~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4gc0_A 215 MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSL-------DHGRKTGGRLLMFGVGVIVIGVMLSIF 287 (491)
T ss_dssp HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHH-------HhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence 6677889999886554333222211111100000000000000000 00011111122333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 009268 325 FAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRT 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 404 (538)
......+.+..+.|.+.+.. +.+...........++..+++.++.+++.||+|||+.+..+.....++.+.+...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 288 QQFVGINVVLYYAPEVFKTL-----GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHhcchHHHHhc-----CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 33334455666667776665 7777777777778889999999999999999999999888877776665554332
Q ss_pred c-cCchHHHHHHHHHHHHHh-hccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--
Q 009268 405 Y-GSVSQTVNIVLMMVAGLF-VNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-- 480 (538)
Q Consensus 405 ~-~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 480 (538)
. .....+..++..++...+ ..+..+....+.+|.+|+ +.|+++.|+.++++.+++.+++.+.+.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222223322222222 233345566778888886 8899999999999999999999888776543
Q ss_pred -----CchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccCC
Q 009268 481 -----GWDAVFIMLMVGALIAGLLLSRLVIAEITEKIRRPVTTT 519 (538)
Q Consensus 481 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (538)
++...|++.+++.+++.++.+++. +|+|++..+|.++-
T Consensus 435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~-PETkg~tLeei~~~ 477 (491)
T 4gc0_A 435 LVAHFHNGFSYWIYGCMGVLAALFMWKFV-PETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHC-CCCTTCCHHHHGGG
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhee-cCCCCCCHHHHHHH
Confidence 455677788888777776665444 57777777666554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=293.93 Aligned_cols=356 Identities=12% Similarity=0.060 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCCCccchhhHHHHH
Q 009268 37 LITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTHGTSKLGEIDLAF 116 (538)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~g~~~s~~ 116 (538)
..+++..+....+...+.+..|.+.++ +|++ ..+.|++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~g~s-------~~~~g~~~~~~ 44 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-------------------------------LNVR-------EGAVQSVMGAY 44 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------------------SSST-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-------------------------------cCCC-------HHHHHHHHHHH
Confidence 345556666777777778888888877 7888 89999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchhhhhhhhccccc
Q 009268 117 LACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGK 196 (538)
Q Consensus 117 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 196 (538)
.++..++++++|+++||+|||++++.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+
T Consensus 45 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 99999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 009268 197 RKRGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPN 275 (538)
Q Consensus 197 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 275 (538)
++|++++++.+....+|..++|.+++++. ++|||+.|++.+++.++..++..+.+||++++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 185 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-------------- 185 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc--------------
Confidence 99999999999999999999999999887 579999999988887776554566666654332110
Q ss_pred ccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcch
Q 009268 276 DEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKT 355 (538)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 355 (538)
++...++++.+|+|+++...+..++.......+..+.|.|+++. +|+++.+
T Consensus 186 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~ 236 (375)
T 2gfp_A 186 -------------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV----LGLSSMT 236 (375)
T ss_dssp -------------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----HHHHHHH
T ss_pred -------------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHH
Confidence 01122346778889999988888888889999999999999996 5999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH-HHhhccCchHHHHHHHHHHHHHhhccchhhHHH
Q 009268 356 AGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMY-AAIPSML-LYRTYGSVSQTVNIVLMMVAGLFVNGPYALITT 433 (538)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 433 (538)
++.+.+...++.+++.++.+++.||.+++.. .+... ...+..+ ........+.+...+..++.|++.+...+....
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 314 (375)
T 2gfp_A 237 VSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATS 314 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999987322 22222 1111111 111111124455556677788888888888888
Q ss_pred HHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc-CchHHHHHH
Q 009268 434 AVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ-GWDAVFIML 489 (538)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~ 489 (538)
...+..| +.+|++.|+.+....+|..++|.+.|.+.+. ++...+.+.
T Consensus 315 ~~~~~~p---------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 315 GAMEPFP---------FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHTHHH---------HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---------cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 8888775 6689999999999999999999999999877 777666553
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=289.27 Aligned_cols=379 Identities=12% Similarity=0.047 Sum_probs=268.4
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhh-cCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDT-LDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQM 173 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~ 173 (538)
+|++ ..+.|++.+.+.++..++++++|+++|| +|||++++.+.++.+++.++++++ ++++.++++|+
T Consensus 49 ~~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHIT-------RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FGASALFGSII 116 (491)
T ss_dssp CCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CSTTHHHHHHH
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHH
Confidence 6777 8999999999999999999999999999 899999999999999999999998 99999999999
Q ss_pred HHHhhhccCchhhhhhhhcccccCc--cchhhHHHHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhh
Q 009268 174 VAGLFQATGWPSVVAVIGNWFGKRK--RGLIMGVWNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLF 250 (538)
Q Consensus 174 l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~ 250 (538)
++|++.+...+...++++|++|+++ |+.++++++.+.++|..+||.+++++. +.|||+.|++.++..++..++.++.
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988 777888899999999999999999988 5899999999877766654444444
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCcccccccccccc-------------ccccCccccc------------------CC
Q 009268 251 LAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTA-------------AVENNSGIRY------------------GS 299 (538)
Q Consensus 251 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~------------------~~ 299 (538)
.++..++....+++. ....+.....+... .........+ ..
T Consensus 197 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (491)
T 4aps_A 197 GKKTLDPHYLRPTDP--------LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWM 268 (491)
T ss_dssp HHTTCCSCCSCCSCC--------CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccCCCCc--------cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHH
Confidence 333222111110000 00000000000000 0000000000 00
Q ss_pred CCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHH
Q 009268 300 GSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISD 379 (538)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 379 (538)
.+.+.....+..+....+...+..++....+.....++|.|..+. .+.+....+.+.....++.+++.++.+++.|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 344 (491)
T 4aps_A 269 ISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT 344 (491)
T ss_dssp C------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hccCccCHHHHhccchHHHHHHHHHHHHHHH
Confidence 000000001111222344455555555666666777888899887 5777778889999999999999999999999
Q ss_pred HHhHHHHHH-----HHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccc
Q 009268 380 KLKARATTA-----ATFMYAAIPSMLLYRTY------GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGD 448 (538)
Q Consensus 380 r~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (538)
|++||+... .+..+..++.+++.... ...+.+...+..++.|++.+...+....++.+..|+
T Consensus 345 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------- 417 (491)
T 4aps_A 345 AWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK------- 417 (491)
T ss_dssp HTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------
Confidence 999876533 44444444333332211 122455666777788888888888889999998886
Q ss_pred cchhHHHHHHHHhHhHHHHHHhHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhh
Q 009268 449 SRALATVTAIIDGTGSVGAALGPLLTGFLSTQGWDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 449 ~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
+.+|++.|+.+....+|..++|.+.+.+.+.++...|...+++.+++.++.++..+
T Consensus 418 -~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 418 -AFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp -TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999998888888888888877777666655433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=264.04 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=238.3
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHH---HHHhccccccchhH-HHHHH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFV---GLFGMGYFLDIHAF-GFYLI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~---~~~~~a~~~~~~~~-~~l~~ 170 (538)
+|++ ..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. +.+.++ +.. ..++.
T Consensus 38 ~g~s-------~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 105 (417)
T 2cfq_A 38 NHIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYNILV 105 (417)
T ss_dssp TCCC-------TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTTCCH
T ss_pred hCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 6777 8899999999999999999999999999999999999888775532 212222 211 12344
Q ss_pred HHHHHHhhhccCchhhhhhhhccccc--CccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGK--RKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
.+++.|++.+...+.....+.++.++ ++++...+.......+|..++|.+++++.+.+||+.|++.+++.++. ++..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~-~~~~ 184 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL-AVLL 184 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH-HHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHH
Confidence 55555555554444444445555443 45677788888888999999999999998889999999877665443 3333
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKL 328 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+..++++++.. ++++..+ . + +++....+.++++++|+++...+..+....
T Consensus 185 ~~~~~~~~~~~---~~~~~~~---------~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T 2cfq_A 185 FFAKTDAPSSA---TVANAVG---------A-------N-----------HSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp CSSCCCCSCSS---CSSSSSS---------S-------C-----------CCCCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCccccccc---ccccccc---------c-------c-----------cccccHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 33333221110 0000000 0 0 001111234567888888777666565555
Q ss_pred HHHHHHHHHHHHhhhcccCCcC---CCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEY---LSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (538)
.++.+..++|.|+.+. ++ .+....+...+...++.+++.++.+++.||+++|+.+..+..+.++..+++..
T Consensus 235 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-- 308 (417)
T 2cfq_A 235 TYDVFDQQFANFFTSF----FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-- 308 (417)
T ss_dssp HHHHHHHHHHHHHHHT----SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHH----HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--
Confidence 6666667789888765 33 23445577777778888899999999999999999887776665554333322
Q ss_pred cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHH-HhHhHHHHHHhHHHHHHhhcc-Cch
Q 009268 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAII-DGTGSVGAALGPLLTGFLSTQ-GWD 483 (538)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~ 483 (538)
..+.+...+..++.+++.....+....+..+..|+ +.+|++.|+. +....+|+.++|.+.|.+.+. ++.
T Consensus 309 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~ 379 (417)
T 2cfq_A 309 -ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp -CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH
Confidence 23444444444555555554555566777787775 8899999994 888899999999999999987 888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009268 484 AVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~ 503 (538)
..|.+.+++.+++.++.+..
T Consensus 380 ~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 380 GAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88888888877776655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=253.75 Aligned_cols=379 Identities=10% Similarity=-0.000 Sum_probs=226.0
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhc-CChhhHHHHHHHHHHHHHHHhccccccch-hHHHHHHHHHHHHhhhccCc
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTL-DLRLFLTTGMVGSGIFVGLFGMGYFLDIH-AFGFYLIMQMVAGLFQATGW 183 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~~~~~~-~~~~l~~~r~l~G~~~g~~~ 183 (538)
..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccc
Confidence 89999999999999999999999999999 99999999999999999999998 7 99999999999999999999
Q ss_pred hhhhhhhhcccccCccchhhHH---HHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009268 184 PSVVAVIGNWFGKRKRGLIMGV---WNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVG 259 (538)
Q Consensus 184 ~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 259 (538)
+...+++.|++|+++|+++.+. ...+.++|..+||.+++++. ..|||+.|++.+++.++..++.++..++.++...
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999999999877666 89999999999999999887 4799999999888766643333332222111110
Q ss_pred CCCCCCCCCCCCCC-CCccccccccc------------------cccc---------------cccCcccccCCCCcccc
Q 009268 260 FPYANDPIPSSERL-PNDEESHMQKG------------------KTAA---------------VENNSGIRYGSGSRTSV 305 (538)
Q Consensus 260 ~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~---------------~~~~~~~~~~~~~~~~~ 305 (538)
......+..+.... ..+.+...+.. .... ...+..+.+........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 00000000000000 00000000000 0000 00000000000000000
Q ss_pred chhhhhccCchHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccCCcCCCc-chhhhhhhhhhhhhhhHHHHHHHHH--
Q 009268 306 GLFQACLIPGVIPFAFCLFFAKLVAYT----FLYWLPFYLSQTEIGGEYLSV-KTAGNLSTLFDVGGIFGGIIAGYIS-- 378 (538)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~-- 378 (538)
+..+....++.+.... .+......+. ....++.+..+. +.+. ...+.+.....++.+++..+.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (524)
T 2xut_A 288 PDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDM-----VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYP 361 (524)
T ss_dssp CSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHS-----CCCSSSCHHHHHTTSGGGHHHHGGGTTTC---
T ss_pred cHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhc-----CCCeeecHHHHHHHHHHHHHHhHHHHHhhhHH
Confidence 0000111122221111 1111111111 112223332222 2221 2455666666666666666666653
Q ss_pred --HHHhHH----HHHHHHHHHHHHHHHHHHhhc------cCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccc
Q 009268 379 --DKLKAR----ATTAATFMYAAIPSMLLYRTY------GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVR 446 (538)
Q Consensus 379 --dr~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (538)
+|.++| +.+..+..+.+++.+++.... ...+.+..++..++.|++.+...+.......+..|+
T Consensus 362 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~----- 436 (524)
T 2xut_A 362 AIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK----- 436 (524)
T ss_dssp ---------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT-----
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence 444332 334444444444333332211 123455566677788888888888888888888886
Q ss_pred cccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc---Cc---------hHHHHHHHHHHHHHHHHHHHH
Q 009268 447 GDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ---GW---------DAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 447 ~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~---g~---------~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+.+|+++|+.++...+|+.++|.+.|.+.+. +| ...|++.+++.+++.++.+++
T Consensus 437 ---~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 437 ---AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp ---TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999874 22 223666666666655555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=136.93 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=147.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHH-HhHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE-IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDK-LKARATTAATFM 392 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~ 392 (538)
.++...+..++..+.++....+++.|+.+.. .+++|++..+.+++.+...++..++.++.|+++|| +|||+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4566777778888888899899999998730 00138999999999999999999999999999999 899999998888
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHH
Q 009268 393 YAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPL 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~ 472 (538)
+..++.++... ..+.+..++..++.|++.+...+....++.+.+++++ +.|+.+.++.+....+|..++|.
T Consensus 94 ~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 94 LIMLGHIVLAL---PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD------RRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHS---CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT------THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc------ccceeeehHHHHHHHHHHHHHHH
Confidence 87777666544 3456667777888899998889999999999888632 44888999999999999999999
Q ss_pred HHHHhhcc-CchHHHHHHHHHHHHHHHHHHHH
Q 009268 473 LTGFLSTQ-GWDAVFIMLMVGALIAGLLLSRL 503 (538)
Q Consensus 473 ~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 503 (538)
+.+.+.+. +|+..|++.++..+++.++..+.
T Consensus 165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 99999998877776666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=136.45 Aligned_cols=177 Identities=19% Similarity=0.211 Sum_probs=140.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 009268 315 GVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYA 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 394 (538)
.++...+..+........+...+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34445555555555555566667766544 6 88899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhhcc-CchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHH
Q 009268 395 AIPSMLLYRTYG-SVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLL 473 (538)
Q Consensus 395 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 473 (538)
+++.++...... ..+.+..++..++.|++.+...+....++.+.+++ +.|+++.|+.+....+|..++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------KERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--------THHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc--------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777666654110 23556667778889999988899999999998886 889999999999999999999999
Q ss_pred HHHhhcc-C-chHHHHHHHHHHHHHHHHHHHHhh
Q 009268 474 TGFLSTQ-G-WDAVFIMLMVGALIAGLLLSRLVI 505 (538)
Q Consensus 474 ~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~ 505 (538)
.+.+.+. + |+..|++.+++.++..++..+..+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9998776 7 999999888887776665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-13 Score=132.91 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 009268 317 IPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAI 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~ 396 (538)
..+.+..+...+........+|.+.++. |.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAF-----TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3444555555666666677778766664 99999999999999999999999999999999999999998888887
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHH
Q 009268 397 PSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGF 476 (538)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~ 476 (538)
+.++........+.+..++..++.|++.+...+....++.+..++ +.|+.+.|+.+....+|..++|.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------SSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------TTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776663222245777778888999999999999999999998886 889999999999999999999999999
Q ss_pred hh-cc-C-------------------------chHHHHHHHHHHHHHHHHHHH
Q 009268 477 LS-TQ-G-------------------------WDAVFIMLMVGALIAGLLLSR 502 (538)
Q Consensus 477 l~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~ 502 (538)
+. +. + |+..|++.+++.++..++..+
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88 55 3 888887777666655544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=133.98 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=144.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcC------CCcchhhhhhhhhhhhhhhHHHHHHHHHHHH-hHHH
Q 009268 313 IPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEY------LSVKTAGNLSTLFDVGGIFGGIIAGYISDKL-KARA 385 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 385 (538)
.|.++.+.+..++..+.++....+++.|+.+. +| ++..+.+++.+...++.+++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTA----LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677788888888899999999999999887 68 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHH---HHHHhH
Q 009268 386 TTAATFMYAAIPSMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVT---AIIDGT 462 (538)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---g~~~~~ 462 (538)
.+..+..+..++.++.... ..+.+..++..++.|++.+...+....++.+.+++ +.|+++. ++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--------SNKSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--------TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--------cchHHHHHHHHHHHHH
Confidence 9888887777766655442 12666777778888999999999999999998886 5565444 448899
Q ss_pred hHHHHHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHHHHH
Q 009268 463 GSVGAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLLS 501 (538)
Q Consensus 463 ~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 501 (538)
.++|..++|.+.+.+.+. +|+..|++.+++.+++.++..
T Consensus 157 ~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 999999988877666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=128.09 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009268 318 PFAFCLFFAKLVAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 397 (538)
.+.+..++.......+...+|.+.++. |.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDL-----NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-----SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 445566666667777777788877665 999999999999999999999999999999999999999888887777
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHh
Q 009268 398 SMLLYRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFL 477 (538)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 477 (538)
.++.... ++.+..++..++.|++.+...+.....+.+..++ ++|+++.++.+....+|..++|.+.+.+
T Consensus 79 ~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 79 TLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER--------TQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------SSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6665542 4667777778888999888888888999888876 7788999999999999999999999999
Q ss_pred hcc-CchHHHHHHHHHHHHHHH
Q 009268 478 STQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 478 ~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
.+. +|+..|++.+++.++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHHH
Confidence 988 999999887777666544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=128.22 Aligned_cols=145 Identities=14% Similarity=0.006 Sum_probs=121.7
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....|++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888888888999999999999999999999999998888888788776 77888888888888887777777
Q ss_pred hhhhhhcccccCccchhhHH-HHHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGV-WNAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAYP 255 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p 255 (538)
...++.|.+|++.|+.+.++ ++....+|..++|.++|++. +.|++..|.+.+++.++..++.++..||++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 78899999999999999998 47888899999999999887 468899999888887776555555555543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=116.58 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
............+...++.++.+++.||+|||+.++.+....+++.+..+.......++...+...-+..+.......+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 44556667777888889999999999999999999999888887777665432222222222222222222222344577
Q ss_pred hhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL-------DYGWGWSFILPGASIVMGGIIVYLFLAAYPE 256 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~ 256 (538)
...+.+|.+|.+.|+.++|+......+|..+++.+...+. ..++.+.|++.++++++..+..++++||+..
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 7889999999999999999999999999888876655443 3567788999999988888888899998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 6e-21 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 8e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 93.2 bits (230), Expect = 6e-21
Identities = 81/409 (19%), Positives = 159/409 (38%), Gaps = 37/409 (9%)
Query: 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAF 165
LG Y F+ G + D + R+FL G++ + + LF +
Sbjct: 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM-LFMGFVPWATSSI 116
Query: 166 GFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVL 225
++ + G FQ GWP + +W+ +++RG I+ VWN +VG LL +
Sbjct: 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176
Query: 226 DYGWGWSF--ILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQK 283
+ W +P ++ + + + P+ G P +++
Sbjct: 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP------------------PIEE 218
Query: 284 GKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQ 343
K ++ + + + + + A F L+ Y L W P YL +
Sbjct: 219 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 278
Query: 344 TEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKL--KARATTAATFMYAAIPSMLL 401
+ + ++ + L++ GI G ++ G++SDK+ R T FM + ++
Sbjct: 279 VK----HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 334
Query: 402 YRTYGSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDG 461
Y + + TV+++ M+V G + GP LI A T
Sbjct: 335 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK--------AAGTAAGFTGL 386
Query: 462 TGSVGAAL-GPLLTGFL-STQGWDAVFIMLMVGALIAGLLLSRLVIAEI 508
G +G ++ + G+ GWD F++++ G+++A +LL ++I E
Sbjct: 387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 43/396 (10%), Positives = 95/396 (23%), Gaps = 44/396 (11%)
Query: 107 SKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFG 166
S G I A + + G L D L LR +L + G + F + F + +
Sbjct: 43 SDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102
Query: 167 FYLIMQMVAGLFQATGWPSVVAVIGNWFGKR-KRGLIMGVWNAHTSVGNISGSLLAASVL 225
+ + AV + G VG G+ + +
Sbjct: 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162
Query: 226 DYGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGK 285
+ F L ++ ++++ P A S+ L
Sbjct: 163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL---------- 212
Query: 286 TAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLSQTE 345
+ F Y +
Sbjct: 213 ----------------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 346 IGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY 405
+ G ++T+ ++ A I +++ + ++ +
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 406 GSVSQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSV 465
S ++L + V +++ S +
Sbjct: 311 ---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF-------KQL 360
Query: 466 GAALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGLLL 500
+L G + G+ +++L + AL L+
Sbjct: 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (99), Expect = 8e-05
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 149 IFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGV-WN 207
+ + + +I++ + I + F R I V +
Sbjct: 296 GTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355
Query: 208 AHTSVGNISGSLLAASVLD-YGWGWSFILPGASIVMGGIIVYLFL 251
+ I S+LA ++ + G+ ++++ G + +I L
Sbjct: 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.49 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-42 Score=346.59 Aligned_cols=417 Identities=21% Similarity=0.407 Sum_probs=328.1
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhcCCccceeccccCCCCCCCCCCCCCCcchhhhhhhccccccccccCCCCCCCCCC
Q 009268 25 DWSLTTYRYIILLITFIAYACYHASRKPSSIVKSVLCPDPLKGPKKKPWPIGEFFVRQEFVGLDRNVSTAKGWDPFNGTH 104 (538)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 104 (538)
++..+++||.++..++++++..++++..++++.|.+. | +|+|
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-------------------------------~g~s------ 57 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-------------------------------QGFS------ 57 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-------------------------------STTC------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------------------------------hCcC------
Confidence 3456788999999999999999999999999999875 3 5888
Q ss_pred CccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCch
Q 009268 105 GTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWP 184 (538)
Q Consensus 105 ~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~ 184 (538)
.+|.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.++++++... .++++.+++.|++.|++.+...+
T Consensus 58 -~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 135 (447)
T d1pw4a_ 58 -RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TSSIAVMFVLLFLCGWFQGMGWP 135 (447)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HSSSSHHHHHHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh-hhhHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998876111 14788999999999999999999
Q ss_pred hhhhhhhcccccCccchhhHHHHHHHhhhHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 009268 185 SVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGSLLAASVLD--YGWGWSFILPGASIVMGGIIVYLFLAAYPEDVGFPY 262 (538)
Q Consensus 185 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~--~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 262 (538)
...++++|++|+++|++++++.+.+..+|..+++.+++.+.. .+||+.|++.+++.++..++.+++.+++|++.....
T Consensus 136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (447)
T d1pw4a_ 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 215 (447)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS
T ss_pred HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccch
Confidence 999999999999999999999999999999999998887663 479999999999888887888888887776654432
Q ss_pred CCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009268 263 ANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKLVAYTFLYWLPFYLS 342 (538)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (538)
.++...+..+...+. .++ +...+....+..+++|.++......++.....+....+.|.|+.
T Consensus 216 ~~~~~~~~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T d1pw4a_ 216 IEEYKNDYPDDYNEK-------AEQ-----------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277 (447)
T ss_dssp CTTTCCC-------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred hhhhhhhcccchhhc-------ccc-----------ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcc
Confidence 222211111100000 000 12223334566788888898888889999999999999999999
Q ss_pred hcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHhhccCchHHHHHHHHHHH
Q 009268 343 QTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIP--SMLLYRTYGSVSQTVNIVLMMVA 420 (538)
Q Consensus 343 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 420 (538)
+. ++++..+.+.......++.+++.++.|++.||+++++..........+. ...+.......+.+...+..++.
T Consensus 278 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 278 EV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp TB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cc----cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 98 7999999999999999999999999999999998765433333222222 22222222344566667777788
Q ss_pred HHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHH-HHHhHHHHHHhhcc-CchHHHHHHHHHHHHHHH
Q 009268 421 GLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVG-AALGPLLTGFLSTQ-GWDAVFIMLMVGALIAGL 498 (538)
Q Consensus 421 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~ 498 (538)
|++.++..+.......+..|+ +.+|++.|+.+.+.+++ ..++|.+.|.+.|. |+...|++.+++.+++.+
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPK--------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCT--------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 888878788888888888875 88999999999988875 56688999999998 999999888888887777
Q ss_pred HHHHHhhhhhhhh
Q 009268 499 LLSRLVIAEITEK 511 (538)
Q Consensus 499 ~~~~~~~~~~~~~ 511 (538)
+...+..+++|++
T Consensus 426 ~~~~~~~~~~~r~ 438 (447)
T d1pw4a_ 426 LLIVVMIGEKRRH 438 (447)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccH
Confidence 6666655444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.6e-29 Score=246.09 Aligned_cols=358 Identities=13% Similarity=0.072 Sum_probs=257.6
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHH----HH
Q 009268 95 KGWDPFNGTHGTSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFY----LI 170 (538)
Q Consensus 95 ~g~s~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l----~~ 170 (538)
+|+| ++++|++.+++.++..++++++|+++||+|||++++++..+..++.++..+. .+.... ++
T Consensus 38 ~g~s-------~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 105 (417)
T d1pv7a_ 38 NHIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF-----IFGPLLQYNILV 105 (417)
T ss_dssp HCCC-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH-----THHHHHHTTCHH
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHH
Confidence 6888 9999999999999999999999999999999999999999998888888876 444443 44
Q ss_pred HHHHHHhhhccCchhhhhhhhccccc--CccchhhHHHHHHHhhhHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 009268 171 MQMVAGLFQATGWPSVVAVIGNWFGK--RKRGLIMGVWNAHTSVGNISGSLLAASVLDYGWGWSFILPGASIVMGGIIVY 248 (538)
Q Consensus 171 ~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~gwr~~f~~~~~~~~~~~~~~~ 248 (538)
.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+.+|+..++.......+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (417)
T d1pv7a_ 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185 (417)
T ss_dssp HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence 45555555554444444444443332 3556778888888999999999999999988888888888877777777777
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCCccccccccccccccccCcccccCCCCccccchhhhhccCchHHHHHHHHHHHH
Q 009268 249 LFLAAYPEDVGFPYANDPIPSSERLPNDEESHMQKGKTAAVENNSGIRYGSGSRTSVGLFQACLIPGVIPFAFCLFFAKL 328 (538)
Q Consensus 249 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (538)
+..++.++....+.++++. ..+.......+.++++..+...........
T Consensus 186 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T d1pv7a_ 186 FAKTDAPSSATVANAVGAN-------------------------------HSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp SSCCCSCSSSCSSHHHHSC-------------------------------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred HHhcccccchhhhhhhhhh-------------------------------cccccccccccccccccccchhhhhHHHHH
Confidence 7777665544321100000 111112222334444444444444444443
Q ss_pred HHHHHHHHHHHHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCc
Q 009268 329 VAYTFLYWLPFYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTYGSV 408 (538)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
.........+.+..... ...+.+....+.......++..++..+.+++.||.++|+.+..+..+..+..+.+.. ..
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~---~~ 310 (417)
T d1pv7a_ 235 TYDVFDQQFANFFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF---AT 310 (417)
T ss_dssp HHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---CC
T ss_pred HHHhhhccccccccccc-cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc---cc
Confidence 34333333333333220 002455666777888888999999999999999999999988888777776555544 35
Q ss_pred hHHHHHHHHHHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHH-HhHhHHHHHHhHHHHHHhhcc-CchHHH
Q 009268 409 SQTVNIVLMMVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAII-DGTGSVGAALGPLLTGFLSTQ-GWDAVF 486 (538)
Q Consensus 409 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~~~~ 486 (538)
+.+..++..++.|++.+...+.....+.+.+|+ +.+|++.|+. +....+|..++|.+.|++.|. |++.+|
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~ 382 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG--------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 667777788888999888899999999999886 8899999985 456679999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 009268 487 IMLMVGALIAGLLLSRLVIAE 507 (538)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~ 507 (538)
++.+++.++..++..+..+++
T Consensus 383 ~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 383 LVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 998888888777776665544
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.8e-13 Score=134.64 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=125.4
Q ss_pred HHhhhcccCCcCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-cCchHHHHHHHH
Q 009268 339 FYLSQTEIGGEYLSVKTAGNLSTLFDVGGIFGGIIAGYISDKLKARATTAATFMYAAIPSMLLYRTY-GSVSQTVNIVLM 417 (538)
Q Consensus 339 ~~l~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 417 (538)
.++++. |++..+.|++.+...++..++.++.|+++||+|||+.+..+..+..++.++..... ...+.+..++..
T Consensus 49 p~~~~~-----g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 49 PYLVEQ-----GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HHTTSS-----TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHh-----CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 355554 99999999999999999999999999999999999999988887777666554321 113455667777
Q ss_pred HHHHHhhccchhhHHHHHHhhcCCCcccccccchhHHHHHHHHhHhHHHHHHhHHHHHHhhcc--CchHHHHHHHHHHHH
Q 009268 418 MVAGLFVNGPYALITTAVSADLGTHSSVRGDSRALATVTAIIDGTGSVGAALGPLLTGFLSTQ--GWDAVFIMLMVGALI 495 (538)
Q Consensus 418 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~ 495 (538)
++.|++.+..++.....+.+.+++ +.|++++|+.+....+|..++|.+.+.+.+. +|+..|++.+.+.++
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~~~~--------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 195 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHWWSQ--------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 195 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTT--------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHh--------hcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHH
Confidence 888888888889999999998886 8899999999999999999999998887765 888888888877777
Q ss_pred HHHHHHHHhh
Q 009268 496 AGLLLSRLVI 505 (538)
Q Consensus 496 ~~~~~~~~~~ 505 (538)
..++.+...+
T Consensus 196 ~~~~~~~~~~ 205 (447)
T d1pw4a_ 196 VALFAFAMMR 205 (447)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcc
Confidence 6666655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.5e-13 Score=133.13 Aligned_cols=144 Identities=14% Similarity=-0.001 Sum_probs=129.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhhhcCChhhHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhccCchh
Q 009268 106 TSKLGEIDLAFLACYSVGMFVAGHLGDTLDLRLFLTTGMVGSGIFVGLFGMGYFLDIHAFGFYLIMQMVAGLFQATGWPS 185 (538)
Q Consensus 106 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 185 (538)
....+...+...++..++.++.+++.||+|+|+.+.++.++.+++.++..+. ++.+.+++..++.|++.+...+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-----cccchhhHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred hhhhhhcccccCccchhhHHH-HHHHhhhHhHHHHHHHHHH-HhCchHHHHHHHHHHHHHHHHHHhhhccC
Q 009268 186 VVAVIGNWFGKRKRGLIMGVW-NAHTSVGNISGSLLAASVL-DYGWGWSFILPGASIVMGGIIVYLFLAAY 254 (538)
Q Consensus 186 ~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 254 (538)
..+++.|.+|+++|+++.++. .....+|..++|+++|++. ++||+..|++.+++.++..++..+.++++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999985 4567799999999999988 58999999999988888766666666543
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