Citrus Sinensis ID: 009287

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKVEPPKETEAAESSSSKQEDSGEKEEETEKEETAAAPARRRRRDN
cHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEccccccccEEEEEccccccccEEEEcccccccEEEEccccccccccccEEEEEEEEEcccccccccEEEEccccccccccccccccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccHHHHHHHcccccccccccc
cHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccEEccccccccEEEEEccccccccEEEEccHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEcccccccccHHHccccccEEEEEcccccccccEEEEEEEcccccccEEEEHccccccccccccccEEEEEEEccccEEEEEEccEEEEcccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHccHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccHHHcccccHHHHHHHcccccccccccccc
MVQRMAVSLRFALLLFAAFVSFQLisasddatiLYESfdesfegrwivSQKDEYKgvwkhskseghedygllvgepaKKYAIVKEldeplslkdgtVVLQYEVRLQNGLECGGAYLkylrpqeagwvskefdnespymimfgpdkcgatnkVHFILKhknpksgeyiehhlknppsvpsdklTHVYTAIlkpdnelriLIDGEEKQkanflaaddfqpplipektipdpddkkpedwderakipdpdavkpedwdedapmeiededavkpegwldddpeeiddpeatkpedwddeedgeweapkidnpkceaapgcgewkrpmkrnpaykgkwhaphidnpnykgiwkpqqipnpnyfeldkpdfepiaavGIEIWTmqdgilfdnilisKDEKVAESYRasawkpkfdVEKEKLKAEEAaagsdglaGFQKTVFDLLYkvadipfldayKLKIIDVIEkgekqpnltiGILVSVVAVIITVLFKIIFggkkakveppketeaaesssskqedsgekeeetEKEETAAAPARRRRRDN
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKhskseghedyglLVGEPAKKYAIVKELdeplslkdgtVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKnppsvpsdKLTHVYTAILKPDNELRILIDGEEKQKANflaaddfqpplipektipdpddkkpedwderakipdpdavkpedwdEDAPmeiededavkpegwldddpeeiddpeatkpedwddeedgeweapkidnpkceaapgcgewkrPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYrasawkpkfdvEKEKLKAEEaaagsdglaGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEkgekqpnltigILVSVVAVIITVLFKIIFggkkakveppketeaaesssskqedsgekeeetekeetaaaparrrrrdn
MVQRMavslrfalllfaafvsfQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIpektipdpddkkpedwdeRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLdddpeeiddpeATKPedwddeedgeweAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVekeklkaeeaaaGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKVeppketeaaesssskqedsgekeeetekeetaaapaRRRRRDN
*****AVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHK*********************KLTHVYTAILKPDNELRILIDG*******F*********************************************************************************************************************AYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKP******************DGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGG************************************************
********LRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQE**********ESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIP*********KKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKF*************************VFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKII***************************************************
MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDP*********ERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEAT************WEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGK***********************************************
*VQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAA*GSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGG************************************************
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKAKVEPPKETEAAESSSSKQEDSGEKEEETEKEETAAAPARRRRRDN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
P29402530 Calnexin homolog 1 OS=Ara yes no 0.983 0.998 0.755 0.0
Q39817546 Calnexin homolog OS=Glyci yes no 0.986 0.972 0.764 0.0
Q38798532 Calnexin homolog 2 OS=Ara no no 0.938 0.949 0.753 0.0
O82709551 Calnexin homolog OS=Pisum N/A no 0.996 0.972 0.710 0.0
Q39994540 Calnexin homolog OS=Helia N/A no 0.929 0.925 0.701 0.0
P35564591 Calnexin OS=Mus musculus yes no 0.799 0.727 0.441 1e-108
P35565591 Calnexin OS=Rattus norveg yes no 0.799 0.727 0.441 1e-107
Q5R440592 Calnexin OS=Pongo abelii yes no 0.799 0.726 0.437 1e-107
P24643593 Calnexin OS=Canis familia yes no 0.799 0.725 0.435 1e-106
P27824592 Calnexin OS=Homo sapiens yes no 0.799 0.726 0.433 1e-106
>sp|P29402|CALX1_ARATH Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/539 (75%), Positives = 458/539 (84%), Gaps = 10/539 (1%)

Query: 1   MVQRMAVSLRFALLLFAAFVSFQLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKH 60
           M QR   S+    LL  AFVSFQ +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH
Sbjct: 1   MRQRQLFSV---FLLLLAFVSFQKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKH 57

Query: 61  SKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLR 120
           +KSEGHEDYGLLV E A+KY IVKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLR
Sbjct: 58  AKSEGHEDYGLLVSEKARKYGIVKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLR 117

Query: 121 PQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSD 180
           PQEAGW  + FD+ESPY IMFGPDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP D
Sbjct: 118 PQEAGWTPQGFDSESPYSIMFGPDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYD 177

Query: 181 KLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDER 240
           KL+HVYTAILKPDNE+RIL+DGEEK+KAN L+ +DF+P LIP KTIPDP+DKKPEDWDER
Sbjct: 178 KLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDER 237

Query: 241 AKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEW 300
           AKIPDP+AVKPEDWDEDAPMEIEDE+A KPEGWLDD+PEE+DDPEATKPEDWDDEEDG W
Sbjct: 238 AKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMW 297

Query: 301 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFEL 360
           EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFEL
Sbjct: 298 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFEL 357

Query: 361 DKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEA 420
           D+PD+EPIAA+GIEIWTMQDGILFDNILI+KDEKVAE+YR + WKPKFDVEKEK KAEE 
Sbjct: 358 DRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEE 417

Query: 421 AAGS-DGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVI 479
           AAGS DGL  +QK VFDLL KVAD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V 
Sbjct: 418 AAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVF 477

Query: 480 ITVLFKIIFGGKKAKVEPPKETEAAESSSSKQEDSGEKEEETEKEETAAAPARRRRRDN 538
            ++  K+IFGGKKA   P ++ +   + SSK  D  EK     KEETAA   R+ RRDN
Sbjct: 478 FSLFLKLIFGGKKAAA-PVEKKKPEVAESSKSGDEAEK-----KEETAAPRKRQPRRDN 530
Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q39817|CALX_SOYBN Calnexin homolog OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q38798|CALX2_ARATH Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2 Back     alignment and function description
>sp|O82709|CALX_PEA Calnexin homolog OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q39994|CALX_HELTU Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1 Back     alignment and function description
>sp|P35564|CALX_MOUSE Calnexin OS=Mus musculus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|P35565|CALX_RAT Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1 Back     alignment and function description
>sp|Q5R440|CALX_PONAB Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2 Back     alignment and function description
>sp|P24643|CALX_CANFA Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3 Back     alignment and function description
>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
255540003542 calnexin, putative [Ricinus communis] gi 0.957 0.950 0.820 0.0
297797139529 calnexin 1 [Arabidopsis lyrata subsp. ly 0.981 0.998 0.758 0.0
15240353530 calnexin 1 [Arabidopsis thaliana] gi|231 0.983 0.998 0.755 0.0
31321896533 putative papillar cell-specific calnexin 0.975 0.984 0.761 0.0
297797141 1401 hypothetical protein ARALYDRAFT_496347 [ 0.933 0.358 0.774 0.0
225447725539 PREDICTED: calnexin homolog [Vitis vinif 0.990 0.988 0.762 0.0
147858623539 hypothetical protein VITISV_041895 [Viti 0.990 0.988 0.762 0.0
224134230533 predicted protein [Populus trichocarpa] 0.973 0.983 0.760 0.0
351727521546 calnexin homolog precursor [Glycine max] 0.986 0.972 0.764 0.0
356508884543 PREDICTED: calnexin homolog [Glycine max 0.981 0.972 0.776 0.0
>gi|255540003|ref|XP_002511066.1| calnexin, putative [Ricinus communis] gi|223550181|gb|EEF51668.1| calnexin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/519 (82%), Positives = 466/519 (89%), Gaps = 4/519 (0%)

Query: 1   MVQRMAVSLRFALLLFAAFVSF-QLISASDDATILYESFDESFEGRWIVSQKDEYKGVWK 59
           M +   +SLR AL+   AFVSF QL + SDD  I YESF++SFEGRW +S KD+YKG WK
Sbjct: 1   MGEAKRISLRLALVFLVAFVSFVQLRADSDDNKIFYESFEDSFEGRWTLSAKDDYKGEWK 60

Query: 60  HSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYL 119
           H+KSEGH++YGLLV E A+KYAIVKELDEP +LKDGT+VLQ+E R QNGLECGGAYLKYL
Sbjct: 61  HAKSEGHDEYGLLVSEKARKYAIVKELDEPATLKDGTIVLQFETRFQNGLECGGAYLKYL 120

Query: 120 RPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPS 179
           RPQEAGW  K+FDN+SPY IMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLK PPSVPS
Sbjct: 121 RPQEAGWTPKDFDNDSPYSIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKYPPSVPS 180

Query: 180 DKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDE 239
           DKLTHVYTAILKPDNELRIL+DGEEK+KANFL++DDF+PPL+P KTIPDPDDKKPEDWDE
Sbjct: 181 DKLTHVYTAILKPDNELRILVDGEEKKKANFLSSDDFEPPLVPAKTIPDPDDKKPEDWDE 240

Query: 240 RAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGE 299
           RAKIPDP+AVKP+DWDEDAPMEI DEDA KPEGWLDD+PEEIDDP+A KPEDWDDEEDGE
Sbjct: 241 RAKIPDPNAVKPDDWDEDAPMEIVDEDAEKPEGWLDDEPEEIDDPDAAKPEDWDDEEDGE 300

Query: 300 WEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE 359
           WEAPKIDNPKCE APGCGEWKRPMKRNPAYKGKWHAP IDNPNYKGIWKPQ+IPNPNYFE
Sbjct: 301 WEAPKIDNPKCETAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPNYFE 360

Query: 360 LDKPDFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEE 419
           L+KPDFEPIAAVGIEIWTMQDGILF +ILI+ DEKVAES R +AWKPKFD EKEK KAE+
Sbjct: 361 LEKPDFEPIAAVGIEIWTMQDGILFGHILIADDEKVAESLRQTAWKPKFDAEKEKQKAED 420

Query: 420 AAAGSDGLAGFQKTVFDLLYKVADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVI 479
           AAAGSDGLAGFQK VFDLLY+VADIPFL  +K KIID+IEKGEKQPNLTIGILVS+V VI
Sbjct: 421 AAAGSDGLAGFQKKVFDLLYQVADIPFLSEHKDKIIDIIEKGEKQPNLTIGILVSIVVVI 480

Query: 480 ITVLFKIIFGGKK-AKVEPPKETEAAESSSSKQEDSGEK 517
            TVLFKI+FGGKK AKVE  K   AAE +S K+E SGEK
Sbjct: 481 FTVLFKILFGGKKPAKVE-EKPAPAAE-TSKKEESSGEK 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297797139|ref|XP_002866454.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] gi|297312289|gb|EFH42713.1| calnexin 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240353|ref|NP_200987.1| calnexin 1 [Arabidopsis thaliana] gi|231683|sp|P29402.1|CALX1_ARATH RecName: Full=Calnexin homolog 1; Flags: Precursor gi|16211|emb|CAA79144.1| calnexin homolog [Arabidopsis thaliana] gi|10176872|dbj|BAB10079.1| calnexin homolog precursor [Arabidopsis thaliana] gi|16649021|gb|AAL24362.1| calnexin homolog precursor [Arabidopsis thaliana] gi|21387169|gb|AAM47988.1| calnexin-like protein precursor [Arabidopsis thaliana] gi|21555674|gb|AAM63911.1| calnexin-like protein [Arabidopsis thaliana] gi|332010135|gb|AED97518.1| calnexin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|31321896|gb|AAK84429.1| putative papillar cell-specific calnexin [Brassica napus] Back     alignment and taxonomy information
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225447725|ref|XP_002277666.1| PREDICTED: calnexin homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858623|emb|CAN83091.1| hypothetical protein VITISV_041895 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134230|ref|XP_002321768.1| predicted protein [Populus trichocarpa] gi|222868764|gb|EEF05895.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351727521|ref|NP_001235116.1| calnexin homolog precursor [Glycine max] gi|3334138|sp|Q39817.1|CALX_SOYBN RecName: Full=Calnexin homolog; Flags: Precursor gi|669003|gb|AAA80588.1| calnexin [Glycine max] Back     alignment and taxonomy information
>gi|356508884|ref|XP_003523183.1| PREDICTED: calnexin homolog [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2159223530 CNX1 "calnexin 1" [Arabidopsis 0.875 0.888 0.703 4.5e-185
ASPGD|ASPL0000015815561 clxA [Emericella nidulans (tax 0.663 0.636 0.463 1e-84
UNIPROTKB|G4MTZ0577 MGG_01607 "Calnexin" [Magnapor 0.802 0.748 0.411 1.2e-83
MGI|MGI:88261591 Canx "calnexin" [Mus musculus 0.676 0.615 0.445 5e-83
UNIPROTKB|E1C2S5591 CANX "Uncharacterized protein" 0.674 0.614 0.449 1e-82
UNIPROTKB|E1C8M9582 CANX "Uncharacterized protein" 0.674 0.623 0.449 1e-82
UNIPROTKB|F1P2L1600 CANX "Uncharacterized protein" 0.674 0.605 0.449 1e-82
RGD|2266591 Canx "calnexin" [Rattus norveg 0.674 0.614 0.444 1.3e-82
UNIPROTKB|P35565591 Canx "Calnexin" [Rattus norveg 0.674 0.614 0.444 1.3e-82
UNIPROTKB|A7Z066593 canx "Canx protein" [Bos tauru 0.674 0.612 0.439 2.8e-82
TAIR|locus:2159223 CNX1 "calnexin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1795 (636.9 bits), Expect = 4.5e-185, P = 4.5e-185
 Identities = 332/472 (70%), Positives = 374/472 (79%)

Query:    23 QLISASDDATILYESFDESFEGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAI 82
             Q +   DD T+LYESFDE F+GRWIVS+  +Y+GVWKH+KSEGHEDYGLLV E A+KY I
Sbjct:    20 QKLCYCDDQTVLYESFDEPFDGRWIVSKNSDYEGVWKHAKSEGHEDYGLLVSEKARKYGI 79

Query:    83 VKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFG 142
             VKELDEPL+LK+GTVVLQYEVR Q GLECGGAYLKYLRPQEAGW  + FD+ESPY IMFG
Sbjct:    80 VKELDEPLNLKEGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFG 139

Query:   143 PDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDG 202
             PDKCG TNKVHFILKHKNPKSGEY+EHHLK PPSVP DKL+HVYTAILKPDNE+RIL+DG
Sbjct:   140 PDKCGGTNKVHFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDG 199

Query:   203 EEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEI 262
             EEK+KAN L+ +DF+P LI                  RAKIPDP+AVKPEDWDEDAPMEI
Sbjct:   200 EEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEI 259

Query:   263 EDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRP 322
             EDE+A KPEGWL           ATKP            APKIDNPKCEAAPGCGEWKRP
Sbjct:   260 EDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRP 319

Query:   323 MKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGI 382
             MKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFELD+PD+EPIAA+GIEIWTMQDGI
Sbjct:   320 MKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGI 379

Query:   383 LFDNILISKDEKVAESYRASAWKPKFDVXXXXXXXXXXXXGS-DGLAGFQKTVFDLLYKV 441
             LFDNILI+KDEKVAE+YR + WKPKFDV            GS DGL  +QK VFDLL KV
Sbjct:   380 LFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVVFDLLNKV 439

Query:   442 ADIPFLDAYKLKIIDVIEKGEKQPNLTIGILVSVVAVIITVLFKIIFGGKKA 493
             AD+ FL AYK KI ++IEK E+QPNLTIG+LV++V V  ++  K+IFGGKKA
Sbjct:   440 ADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGGKKA 491
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
ASPGD|ASPL0000015815 clxA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTZ0 MGG_01607 "Calnexin" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:88261 Canx "calnexin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2S5 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8M9 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2L1 CANX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|2266 Canx "calnexin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P35565 Canx "Calnexin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z066 canx "Canx protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P36581CALX_SCHPONo assigned EC number0.40950.89210.8571yesno
Q39994CALX_HELTUNo assigned EC number0.70130.92930.9259N/Ano
Q39817CALX_SOYBNNo assigned EC number0.76490.98690.9725yesno
P27825CALX_YEASTNo assigned EC number0.30500.82890.8884yesno
P29402CALX1_ARATHNo assigned EC number0.75510.98320.9981yesno
O82709CALX_PEANo assigned EC number0.71060.99620.9727N/Ano
Q38798CALX2_ARATHNo assigned EC number0.75330.93860.9492nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-168
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  479 bits (1234), Expect = e-168
 Identities = 206/365 (56%), Positives = 251/365 (68%), Gaps = 17/365 (4%)

Query: 34  LYESFD--ESFEGRWIVSQ-KDEYKGVWKHSKSEGH----EDYGLLVGEPAKKYAIVKEL 86
            +E FD  + +E RWI S+ K +  G WK    + +    +D GL+  + AK YAI  + 
Sbjct: 3   FFEQFDDDDLWEKRWIPSKAKKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKF 62

Query: 87  DEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKC 146
            +P S K  T+V+QYEV+LQ G++CGGAY+K L         K+F  E+PY IMFGPD C
Sbjct: 63  PKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQ---KDFSGETPYTIMFGPDIC 119

Query: 147 GATNK-VHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEK 205
           G+  K VHFI +HK P +G   E HL   P    DKLTH+YT I++PDN   ILIDGE  
Sbjct: 120 GSDTKKVHFIFRHK-PITGYKEEKHLIKKPISRCDKLTHLYTLIIRPDNTFEILIDGEVV 178

Query: 206 QKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDE 265
           +  + L  +DF PP  P K IPDP DKKPEDWD+R KIPDP+A KPEDWDED P  I D 
Sbjct: 179 KSGSLL--EDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDP 236

Query: 266 DAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKR 325
           +AVKPEGWL+D+PE I DP+ATKPEDWDDEEDGEWEAP I NPKCE A GC   K PM +
Sbjct: 237 NAVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGC--GKPPMIK 294

Query: 326 NPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILF 384
           NP YKGKW  P IDNPNYKG+WKP++IPNP+YFE   P + EPI A+G E+W ++ GILF
Sbjct: 295 NPKYKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILF 354

Query: 385 DNILI 389
           DNILI
Sbjct: 355 DNILI 359

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.97
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.89
PF07423 217 DUF1510: Protein of unknown function (DUF1510); In 87.91
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-149  Score=1170.38  Aligned_cols=480  Identities=55%  Similarity=0.955  Sum_probs=426.9

Q ss_pred             HHHHHHHHHHHhhhcccccC------------CCcccceecccCcc--cCCCceeccCC---------CccceEEEeCCC
Q 009287            8 SLRFALLLFAAFVSFQLISA------------SDDATILYESFDES--FEGRWIVSQKD---------EYKGVWKHSKSE   64 (538)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~F~E~Fd~~--~~~rWv~S~~~---------~y~G~W~~~~~~   64 (538)
                      .++++++||++++.+.....            .+-+..|.++||.+  |. |||.|.++         +|.|+|.++++.
T Consensus         5 ~~~~~~lLli~~v~~~~~~~~~~~~e~~~~~~~~ykspf~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~   83 (558)
T KOG0675|consen    5 MLLFLFLLLIAAVDGNDDDYEDTCTEPSVFSKESYKSPFADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPP   83 (558)
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccccccCcchhcccccccce-eeeeeecccccccchhhhccceeeeccCc
Confidence            34445666666666443211            11233478888863  44 89999874         899999999765


Q ss_pred             C---CCCceeeeCCCcchhhhhcccCCCccCCCCcEEEEEEEEecCCcccCCceeEecCCCCCCCCccccCCCCCeEEEE
Q 009287           65 G---HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF  141 (538)
Q Consensus        65 ~---~~D~GL~~~~~ak~yaIs~~l~kp~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMF  141 (538)
                      .   ++|+|||++++|||||||+.|++||+++.++||||||||+|+|++|||||||||+.+..+..+++|+++|||+|||
T Consensus        84 ~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImF  163 (558)
T KOG0675|consen   84 KSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMF  163 (558)
T ss_pred             cccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEe
Confidence            3   8999999999999999999999999999999999999999999999999999999878889999999999999999


Q ss_pred             cCCCCCCCCeEEEEEecCCCCCccccccccCCCCC----CCCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCC
Q 009287          142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQ  217 (538)
Q Consensus       142 GPDkCG~~~kvHfI~~~knp~tg~~ee~~lk~p~~----~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~  217 (538)
                      ||||||.+++|||||||+||+||+|+|||++.|+.    ..+|++||||||||+|||||+|||||++|+.|||+  +||.
T Consensus       164 GPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~  241 (558)
T KOG0675|consen  164 GPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFE  241 (558)
T ss_pred             CccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccC
Confidence            99999999999999999999999999999999998    56799999999999999999999999999999999  8999


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCccCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 009287          218 PPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEED  297 (538)
Q Consensus       218 P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~d  297 (538)
                      ||++||++|+||+|.||+|||+|++||||+|+||+||||++|++|+|++|+||++|+++||++|+||+|+||+|||+++|
T Consensus       242 Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~d  321 (558)
T KOG0675|consen  242 PPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEED  321 (558)
T ss_pred             CCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccCCCCCccCCCCCCCCCCCCcccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeEe
Q 009287          298 GEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIW  376 (538)
Q Consensus       298 G~W~~p~i~NP~c~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~d~~p-~~~~i~~iG~ElW  376 (538)
                      |+|++|+|.||+|..++|||+|++|||+||+|||+|.+|||+||+|+|+|+||+|+||+||++.+| .+++|.+||+|+|
T Consensus       322 GeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElW  401 (558)
T KOG0675|consen  322 GEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELW  401 (558)
T ss_pred             CccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccchhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999 8999999999999


Q ss_pred             eeccCceeeeeeecCCHHHHHHHHHhhcCCCchhHHHHHHHHHhhcCCC-CccchhHHHHHHHhhhhcchhhhHH-hhhh
Q 009287          377 TMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEKLKAEEAAAGSD-GLAGFQKTVFDLLYKVADIPFLDAY-KLKI  454 (538)
Q Consensus       377 ~~~~~~~FDNili~~d~~~a~~~~~~t~~~k~~~e~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~fl~~~-~~~~  454 (538)
                      +|+++|+|||||||+++++|+.+++.||..|..+++++.-..+...... -...++..++.++..++++.++..+ +.++
T Consensus       402 sMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~~~~~~~~~~~~~~~~w~~~i~~~~~~v~~i~~~c~~~k~k~  481 (558)
T KOG0675|consen  402 SMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKPFVQQVMEAAEGHPWLWAIYILTLLLPVADITKFCAPVKSKI  481 (558)
T ss_pred             hcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccchHHHHHHhhccccchHHHHHHHHhhhhHhhhhhcccccccch
Confidence            9999999999999999999999999999999888877652222222222 3345788899999999998887777 7767


Q ss_pred             hhhhhhhc-cCchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 009287          455 IDVIEKGE-KQPNLTIGILVSVVAVIITVLFKIIFGGK  491 (538)
Q Consensus       455 ~~~~e~~~-~~p~~~~~~~~~v~~~~~~~~~~~~~~~~  491 (538)
                      ...++++. .||.+.+++.+.++.. ...++.+.++|+
T Consensus       482 ~~~~~ktd~~qP~~~~~~~~~~~~~-~~~~~~~~~~~~  518 (558)
T KOG0675|consen  482 SDAIEKTDDEQPNLKIGLEAEIKED-ESDMFKLEFSGS  518 (558)
T ss_pred             hhHHhhccccCCCcccchhhhhhhh-hhhhhccccCCc
Confidence            77777555 8999998777766543 444444444443

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 5e-83
3rg0_A332 Structural And Functional Relationships Between The 2e-36
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 6e-18
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 7e-17
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 9e-04
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 2e-16
1hhn_A101 Calreticulin P-Domain Length = 101 2e-08
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure 
Iteration: 1

 Score =  305 bits (780), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 223/388 (57%), Gaps = 24/388 (6%)
Query: 36  ESFDESFEGRWIVSQ--KDE-------YKGVW-----KHSKSEGHEDYGLLVGEPAKKYA 81
           +SFD      WI+S+  KD+       Y G W     K +K  G  D GL++   AK +A
Sbjct: 30  DSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPG--DKGLVLMSRAKHHA 87
Query: 82  IVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMF 141
           I  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY IMF
Sbjct: 88  ISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLS-KTPELNLDQFHDKTPYTIMF 146
Query: 142 GPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNELR 197
           GPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN   
Sbjct: 147 GPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFE 206
Query: 198 ILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDED 257
           IL+D       N L  +D  PP+                   R KIPDPDAVKP+DW+ED
Sbjct: 207 ILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNED 264
Query: 258 APMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCG 317
           AP +I DE+A KP+GWL           A KP            AP+I NPKCE+APGCG
Sbjct: 265 APAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCG 324
Query: 318 EWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIW 376
            W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE L+     P +A+G+E+W
Sbjct: 325 VWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELW 384
Query: 377 TMQDGILFDNILISKDEKVAESYRASAW 404
           +M   I FDN ++  D +V + +    W
Sbjct: 385 SMTSDIFFDNFIVCGDRRVVDDWANDGW 412
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-148
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 3e-95
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 7e-58
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 2e-12
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 6e-35
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 1e-15
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  431 bits (1110), Expect = e-148
 Identities = 192/400 (48%), Positives = 257/400 (64%), Gaps = 20/400 (5%)

Query: 32  TILYESFDESFEGRWIVSQKDE---------YKGVWKHSKSEGH---EDYGLLVGEPAKK 79
               +SFD      WI+S+  +         Y G W+  + +      D GL++   AK 
Sbjct: 26  VYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKH 85

Query: 80  YAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMI 139
           +AI  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY I
Sbjct: 86  HAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLL-SKTPELNLDQFHDKTPYTI 144

Query: 140 MFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPP----SVPSDKLTHVYTAILKPDNE 195
           MFGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN 
Sbjct: 145 MFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNS 204

Query: 196 LRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWD 255
             IL+D       N L  +D  PP+ P + I DP+D+KPEDWDER KIPDPDAVKP+DW+
Sbjct: 205 FEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWN 262

Query: 256 EDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPG 315
           EDAP +I DE+A KP+GWLDD+PE + DP+A KPEDWD++ DGEWEAP+I NPKCE+APG
Sbjct: 263 EDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPG 322

Query: 316 CGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIE 374
           CG W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE  +P    P +A+G+E
Sbjct: 323 CGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLE 382

Query: 375 IWTMQDGILFDNILISKDEKVAESYRASAWKPKFDVEKEK 414
           +W+M   I FDN ++  D +V + +    W  K   +   
Sbjct: 383 LWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAA 422
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.9
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.55
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.3
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 97.76
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=7.9e-146  Score=1136.95  Aligned_cols=389  Identities=50%  Similarity=1.014  Sum_probs=358.6

Q ss_pred             hhcccccCCCcccceecccCcccCCCceeccCC---------CccceEEEeCCCC---CCCceeeeCCCcchhhhhcccC
Q 009287           20 VSFQLISASDDATILYESFDESFEGRWIVSQKD---------EYKGVWKHSKSEG---HEDYGLLVGEPAKKYAIVKELD   87 (538)
Q Consensus        20 ~~~~~~~~~~~~~~F~E~Fd~~~~~rWv~S~~~---------~y~G~W~~~~~~~---~~D~GL~~~~~ak~yaIs~~l~   87 (538)
                      ++|.+ +..++++||+|+|+++|.+|||+|+++         +|.|+|+++++..   .+|+||||+++|||||||++|+
T Consensus        15 ~~y~~-p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~   93 (424)
T 1jhn_A           15 VTYKA-PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLN   93 (424)
T ss_dssp             --CCC-CCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEE
T ss_pred             ceeec-CCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhc
Confidence            34432 444789999999999999999999996         5889999998763   6899999999999999999999


Q ss_pred             CCccCCCCcEEEEEEEEecCCcccCCceeEecCCCCCCCCccccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCcccc
Q 009287           88 EPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYI  167 (538)
Q Consensus        88 kp~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~~~kvHfI~~~knp~tg~~e  167 (538)
                      +||+|++|+||||||||||++|+|||||||||+. ..++++++|+++|||+||||||+||.++||||||||+||+||+|+
T Consensus        94 kpf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~-~~~~d~~~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~  172 (424)
T 1jhn_A           94 KPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSK-TPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYE  172 (424)
T ss_dssp             EEECSSSSCEEEEEEECCTTCCSEEECCEEEEBC-CSSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEE
T ss_pred             CccccCCCCEEEEEEEEecccccccceEEEeecC-cccCCHhHcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchh
Confidence            9999999999999999999999999999999974 345899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCC----CCCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCcc
Q 009287          168 EHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKI  243 (538)
Q Consensus       168 e~~lk~p~~----~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~I  243 (538)
                      |+|+++++.    +++|++||||||||||||||+|+|||+++++|||+  +||+|||+||++|+||+|+||+|||++++|
T Consensus       173 ekh~~~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~--~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I  250 (424)
T 1jhn_A          173 EKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKI  250 (424)
T ss_dssp             EECCCCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC---------CCSSCCCCBCTTCCCCTTCCCCSEE
T ss_pred             hhcccCCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccH--HhccccCCCcccccCccccCcccccccccc
Confidence            999998874    34799999999999999999999999999999999  899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCccccCCCCCccCCCC
Q 009287          244 PDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLDDDPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPM  323 (538)
Q Consensus       244 ~DP~a~KPeDWde~~p~~I~Dp~a~KP~dW~ddep~~I~DP~a~KPedWdd~~dG~W~~p~i~NP~c~~~~gcG~W~~P~  323 (538)
                      +||+|+||+|||+++|.+|+||+|+||+||+++||++|+||+|+||+||++++||+|++|+|+||+|+.++|||+|++||
T Consensus       251 ~Dp~a~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~  330 (424)
T 1jhn_A          251 PDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPM  330 (424)
T ss_dssp             ECSSCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCE
T ss_pred             CCcccCCccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccCCccCCCCCCCCCCCCCCCCCCCCCCCCC-CCcccceeeEeEeeeccCceeeeeeecCCHHHHHHHHHh
Q 009287          324 KRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFDNILISKDEKVAESYRAS  402 (538)
Q Consensus       324 I~NP~ykG~W~pp~I~NP~YkG~W~P~~I~NP~y~~d~~p-~~~~i~~iG~ElW~~~~~~~FDNili~~d~~~a~~~~~~  402 (538)
                      |+||+|||+|+||||+||+|+|.|+||+|+||+|++|.+| +|.+|++||||||||++|++|||||||+|+++|++++++
T Consensus       331 I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~  410 (424)
T 1jhn_A          331 IDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWAND  410 (424)
T ss_dssp             EECTTCCCSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHH
T ss_pred             CCCccccCcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             hcCCCchhHH
Q 009287          403 AWKPKFDVEK  412 (538)
Q Consensus       403 t~~~k~~~e~  412 (538)
                      ||+.++.+|.
T Consensus       411 t~~~k~~~e~  420 (424)
T 1jhn_A          411 GWGLKKAADG  420 (424)
T ss_dssp             TTTC------
T ss_pred             hhhhhhhhhh
Confidence            9999997764
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 5e-75
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 2e-06
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 0.002
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 2e-67
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-26
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-13
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  235 bits (602), Expect = 5e-75
 Identities = 86/242 (35%), Positives = 120/242 (49%), Gaps = 22/242 (9%)

Query: 33  ILYESFDESFEGRWIVSQ--KDE-------YKGVWKH---SKSEGHEDYGLLVGEPAKKY 80
              +SFD      WI+S+  KD+       Y G W+     +++   D GL++   AK +
Sbjct: 11  YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHH 70

Query: 81  AIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIM 140
           AI  +L++P       +++QYEV  QNG+ECGGAY+K L  +       +F +++PY IM
Sbjct: 71  AISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLL-SKTPELNLDQFHDKTPYTIM 129

Query: 141 FGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP----PSVPSDKLTHVYTAILKPDNEL 196
           FGPDKCG   K+HFI +HKNPK+G Y E H K P     +  +DK TH+YT IL PDN  
Sbjct: 130 FGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSF 189

Query: 197 RILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVKPEDWDE 256
            IL+D       N    + F+    P   I         D      I   D    +DW  
Sbjct: 190 EILVDQSIVNSGNL---EPFKMT--PFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWAN 244

Query: 257 DA 258
           D 
Sbjct: 245 DG 246
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.94
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.8
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.35
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 97.97
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.42
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=3.8e-84  Score=637.79  Aligned_cols=226  Identities=37%  Similarity=0.636  Sum_probs=208.9

Q ss_pred             CCCcccceecccCcccCCCceeccCC---------CccceEEEeCCCC---CCCceeeeCCCcchhhhhcccCCCccCCC
Q 009287           27 ASDDATILYESFDESFEGRWIVSQKD---------EYKGVWKHSKSEG---HEDYGLLVGEPAKKYAIVKELDEPLSLKD   94 (538)
Q Consensus        27 ~~~~~~~F~E~Fd~~~~~rWv~S~~~---------~y~G~W~~~~~~~---~~D~GL~~~~~ak~yaIs~~l~kp~~~~~   94 (538)
                      ..++.+||+|+|+++|.+|||+|+++         +|.|+|.++++..   .+|+|||++++|||||||++|++||++++
T Consensus         5 ~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~   84 (249)
T d1jhna4           5 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDT   84 (249)
T ss_dssp             CCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSS
T ss_pred             CCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCC
Confidence            34789999999999999999999985         6899999987653   78999999999999999999999999999


Q ss_pred             CcEEEEEEEEecCCcccCCceeEecCCCCCCCCccccCCCCCeEEEEcCCCCCCCCeEEEEEecCCCCCccccccccCCC
Q 009287           95 GTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNP  174 (538)
Q Consensus        95 k~LVvQYeVk~q~~l~CGGaYiKLl~~~~~~~~~~~f~~~TpY~IMFGPDkCG~~~kvHfI~~~knp~tg~~ee~~lk~p  174 (538)
                      |+||||||||+|++|+|||||||||+.. ..+++++|+++|||+||||||+||.++||||||||+||.+|+++|+|++.|
T Consensus        85 k~LVvQYeVk~q~~~~CGGaYiKLl~~~-~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfIf~~~np~~~~~eek~~~~p  163 (249)
T d1jhna4          85 KPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRP  163 (249)
T ss_dssp             SCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCC
T ss_pred             CCEEEEEEeeeccCccccceEEEeecCc-ccCCHhHcCCCCCceEEeCCcccCCCCEEEEEEEcCCCCCccceeeeecCC
Confidence            9999999999999999999999999743 457899999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCCCCCceEEEEEcCCCceEEeecceeeccccccccCCCCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCC
Q 009287          175 PS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIPDPDDKKPEDWDERAKIPDPDAVK  250 (538)
Q Consensus       175 ~~----~~~D~~tHLYTLIl~pdntfeI~IDg~~~~~GsL~~~~df~P~~~ppk~I~DP~d~KPeDWdd~~~I~DP~a~K  250 (538)
                      .+    +++|++||||||||+|||||+|+|||+++++|||+  + |.  +.|+++|+||+++||+|||++++|+||+++|
T Consensus       164 ~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le--~-~~--~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~k  238 (249)
T d1jhna4         164 DADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE--P-FK--MTPFSAIGLELWSMTSDIFFDNFIVCGDRRV  238 (249)
T ss_dssp             SSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC--T-TC--CCCEEEEEECCCCSSSCCBCEEEEEESSSHH
T ss_pred             CccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC--c-cc--CCCcccCCCcccCCCCCccccccccCCCcCC
Confidence            54    45799999999999999999999999999999987  3 43  6689999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 009287          251 PEDWDEDA  258 (538)
Q Consensus       251 PeDWde~~  258 (538)
                      |+||||++
T Consensus       239 pedWdedt  246 (249)
T d1jhna4         239 VDDWANDG  246 (249)
T ss_dssp             HHHHHHHT
T ss_pred             hhhhhhhc
Confidence            99999875
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure