Citrus Sinensis ID: 009330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRPVSPRAASPRAASPRAASPRIVQHRRERPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPATVGRKPFNRFV
Secondary Structure (PSIPRED)
cccccccHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccccccHcccccHHHHHHHHHccccccccccccccccccccccccHHHcccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MGKKGSWFSAIKRvftphskeklanesdkkstKEKKkkglgklrhgetnsfiplfrgpsSIEKILGEAEREqklvfrpptppeqpttppfvaqrvasprvpsqritsprvasprvasprpvspraaspraaspraasprivqhrrerpeptlryRHASATKIQAAYRGYMARRSFRALKGLVRLqgvvrgqnvkrQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHkndkeaestlgkwtfgseagnhedwdaslLTKEEMEARMQRKVEAIIKRERAMAYAYSHqlwkstpksaqtsladirsggfpwwwnwlerqlpgantpetsamknfqltpprpnseikpsprvqasthkqhnfefsnmdtptpksakstiltatrpvrspssskipqgspslskysrarvsgaaspfdvplrdddslmscppfsvpnymtptvsakakvrpnsnpkerfpgtpssesqrrlsfpltqgigsfkwkkgsllstskdsssqrvldknqslqsignlsvdstvsmpatvgrkpfnrfv
Flexible Loop (DISEMBL)
mgkkgswfsaikrvftphskeklanesdkkstkekkkkglgklrhgetnsfiplfrgpSSIEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASprvpsqritsprvasprvasprpvspraaspraaspraasprivqhrrerpeptlryrhasATKIQAAYRGYMARRSFRALKGlvrlqgvvrgqnvkrqttnaMKYMQLLVRVQSQIQSRRIQMLENQARRqaqhkndkeaestlgkwtfgseagnheDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQhnfefsnmdtptpkSAKSTILtatrpvrspssskipqgspslskysrarVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVsakakvrpnsnpkerfpgtpssesqrrlsfpltqgigsfkwkkgsllstskdsssqrvldknqslqsignlsvdstvsmpatvgrkpfnrfv
Low Complexity Region (SEG)
MGKKGSWFSAIKRVFTPHSKEKLANesdkkstkekkkkglgklRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFRpptppeqpttppFVAQRVASPRVPSQRITsprvasprvasprpvspraaspraaspraasprIVQHRRERPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLvrvqsqiqsrriqMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPLTQGIGSFKWkkgsllstskdsssQRVLDKNQSLQSIGNLSVDSTVSMPATVGRKPFNRFV
Disordered region (IsUnstruct)
************************************************************************************************************************************************************ASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQS**************************************************************VEAIIKRERAMAYAYSHQLWKST*****TSLADIRSGGFPWWWNWLERQ**********************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MGKKGSWFSAIKR*******************************************************************************************************************************************RYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRG*NVKR**************************************************************************************************************************NWLERQLP*******************************************************************************************************************************************************************************************************PATVGRKPFNRFV
Disordered Region (DISEMBL)
MGKKGSWFSAIKRVFTPHSK**********************LRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQ***********************************************VQHRRERPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLEN****************TLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPP*****************KQHNFEFSNMDTPTPKSAKSTILTAT*****************************ASPFDVPLRDDDSLMSCPPFSVPNYMTPTVS**************************LSFPLTQGIGSFKWKKGS*****************QSLQSIGNLSVDSTVSMPATVGRKPFNRFV
Disordered Region (DISPRO)
**************************************************FIP**RGPSSIEKILGEAEREQKLVFR**************************************************************************LRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDKEAESTL*************DWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKST***************FPWWWNWLERQLPGAN***************************************************************************************************************************************************************************************************M*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRPVSPRAASPRAASPRAASPRIVQHRRERPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRxxxxxxxxxxxxxxxxxxxxxSTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPATVGRKPFNRFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.776	0.624	0.517	1e-114
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.296	0.350	0.436	7e-25
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.121	0.110	0.461	1e-10
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.104	0.070	0.375	6e-06

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 264/510 (51%), Positives = 327/510 (64%), Gaps = 93/510 (18%)

Query: 72  QKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVAS---------------PRVA 116
           Q +  +PP+P  +P T      R  SPR  S R   PR+ +               PR+ 
Sbjct: 208 QAISSKPPSPRAEPPT--LDTPRPPSPRAASLRADPPRLDAARPTTPRPPSPLADAPRLD 265

Query: 117 SPRPVS---------------PRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHAS 158
           +PRP +               PR  +P+  SPR+ SPR VQ RRE   RPEPTL  +HAS
Sbjct: 266 APRPTTPKPPSPRSDPPRLDAPRPTTPKPPSPRSVSPRAVQ-RREIVYRPEPTLPVQHAS 324

Query: 159 ATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRR 218
           ATKIQ A+RGYMAR+SFRALKGLVRLQGVVRG +VKRQT NAMKYMQ +VRVQSQIQSRR
Sbjct: 325 ATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRR 384

Query: 219 IQMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAI 278
           I+MLENQA          + E    KW   SEAGN ++WD S+LTKEE ++R QRK +AI
Sbjct: 385 IKMLENQA----------QVEKDEAKWA-ASEAGN-DNWDDSVLTKEERDSRSQRKTDAI 432

Query: 279 IKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGAN-TPETS-AMK 336
           IKRER+MAYAYS +LWK++PKS Q    D RS  FP WWNW++RQ P A+  P  S   +
Sbjct: 433 IKRERSMAYAYSRKLWKNSPKSTQ----DNRS--FPQWWNWVDRQNPLASPAPSYSQPQR 486

Query: 337 NFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSN-MDTPTPKSAKSTILTATRPVRSPSSS 395
           +F+LTP    S + PSP  Q+S  KQH+    N  DT TP+S++ST  T +RP+ +    
Sbjct: 487 DFRLTP----SRLCPSPLSQSS--KQHHIRLDNHFDTSTPRSSRSTFHTPSRPIHT---- 536

Query: 396 KIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNS 455
                    S+YSR R+ G  SPF    +DDDSL SCPPF  P+YM PTVSAKAKVRPNS
Sbjct: 537 -------GTSRYSRGRLRGQDSPF----KDDDSLTSCPPF--PSYMAPTVSAKAKVRPNS 583

Query: 456 NPKERFPGTPSSESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQR--------VLDKN 507
           NPKER  GTP SE +RR+S+P TQ   +F+W KGSL+ +  +SSS R        VL+K+
Sbjct: 584 NPKERVMGTPVSE-KRRMSYPPTQ--DTFRWNKGSLVMS--NSSSHRGPGSPGGVVLEKH 638

Query: 508 QSLQSIGNLSVDSTVSMPATVGRKPFNRFV 537
           ++L+S+GNLS+ ST SM  TVGRK FNRFV
Sbjct: 639 KTLKSVGNLSIGSTASMATTVGRKEFNRFV 668

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score =  115 bits (289), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 105/174 (60%), Gaps = 15/174 (8%)

Query: 156 HASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQ 215
            A+A  IQ+ +RG++ARR  + ++G  RL+ ++ G  V+RQ    +K MQ L RVQSQI+
Sbjct: 108 EAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIR 167

Query: 216 SRRIQML-ENQAR-RQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQR 273
           SRRI+M  ENQAR +Q   K+ KE    LG    G   GN   W+ S  +KE++EA M  
Sbjct: 168 SRRIRMSEENQARHKQLLQKHAKE----LGGLKNG---GN---WNYSNQSKEQVEAGMLH 217

Query: 274 KVEAIIKRERAMAYAYSHQL-WKSTPKSAQTSLADIRSGGFPWWWNWLERQLPG 326
           K EA ++RERA+AYA++HQ   KS  K+A     D       W W+WLER + G
Sbjct: 218 KYEATMRRERALAYAFTHQQNLKSFSKTANPMFMD--PSNPTWGWSWLERWMAG 269

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 155 RHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQI 214
           R  +AT +QAA+RGY+ARR+F ALKG++RLQ ++RG  V+RQ    +  +  +VR+Q+  
Sbjct: 112 REIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFA 171

Query: 215 QSRRI 219
           + R I
Sbjct: 172 RGREI 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%)

Query: 162 IQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSR 217
           IQAA RG++ARR     K +++LQ  VRG  V+ Q   +++ +Q +V++Q+ +++R
Sbjct: 221 IQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRAR 276

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
224145323	530	predicted protein [Populus trichocarpa]	0.981	0.994	0.777	0.0
224121980	528	predicted protein [Populus trichocarpa]	0.977	0.994	0.783	0.0
357475589	534	IQ domain-containing protein [Medicago t	0.966	0.971	0.699	0.0
225434116	535	PREDICTED: protein IQ-DOMAIN 14-like [Vi	0.972	0.975	0.667	0.0
356500106	534	PREDICTED: protein IQ-DOMAIN 14-like [Gl	0.966	0.971	0.690	0.0
356521459	533	PREDICTED: protein IQ-DOMAIN 14-like iso	0.968	0.975	0.687	0.0
356521461	529	PREDICTED: protein IQ-DOMAIN 14-like iso	0.960	0.975	0.678	0.0
255582195	433	conserved hypothetical protein [Ricinus	0.694	0.861	0.757	1e-158
388509834	370	unknown [Lotus japonicus]	0.672	0.975	0.726	1e-148
297817274	512	IQ-domain 13 [Arabidopsis lyrata subsp.	0.910	0.955	0.562	1e-146

>gi|224145323|ref|XP_002325602.1| predicted protein [Populus trichocarpa] gi|222862477|gb|EEE99983.1| predicted protein [Populus trichocarpa]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/540 (77%), Positives = 467/540 (86%), Gaps = 13/540 (2%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVF+PHSK+KLA+ESDK+STKEKKKKGLGKLRHGET SFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFSPHSKDKLASESDKRSTKEKKKKGLGKLRHGETTSFIPLFREPSS 60

Query: 61  IEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRP 120
           IEKIL EAERE KL+FRPPTPPE+ TTPPFV  R  SPRV SQR+TSPR A+PRVASPR 
Sbjct: 61  IEKILDEAERENKLIFRPPTPPEELTTPPFVPPRADSPRVASQRVTSPRAATPRVASPR- 119

Query: 121 VSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRA 177
               AASPR ASPRAASPR  Q  +E   RPEPTLR  HASATKIQAAYRGY+ARRSFRA
Sbjct: 120 ----AASPRVASPRAASPRNAQRHKEIYYRPEPTLRNHHASATKIQAAYRGYVARRSFRA 175

Query: 178 LKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDKE 237
           LKGLVRLQGV+RGQNVKRQT NAMK+MQLLVRVQSQIQSRRIQMLENQARRQAQ++NDKE
Sbjct: 176 LKGLVRLQGVIRGQNVKRQTMNAMKHMQLLVRVQSQIQSRRIQMLENQARRQAQNRNDKE 235

Query: 238 AESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKST 297
            +STLGKW   SEAGN+EDWD S+LTKEE++AR+Q++VEA++KRERAMAYAYSHQLWK+T
Sbjct: 236 VDSTLGKWGQLSEAGNNEDWDDSVLTKEEIDARLQKRVEAVVKRERAMAYAYSHQLWKAT 295

Query: 298 PKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQA 357
           PKSAQ++L DIRS GFPWWWNWLERQLP  N PE+ A++NFQLTPPRP S++K SPR  +
Sbjct: 296 PKSAQSALMDIRSNGFPWWWNWLERQLPPTNPPESQALRNFQLTPPRPRSDMKASPRPPS 355

Query: 358 STHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAAS 417
            +HKQ +F F NMDTPTP+S+KST+   TR  R+P        SPSLSKYS AR S A S
Sbjct: 356 RSHKQQHFGFDNMDTPTPRSSKSTVFVPTRQARTPLHRTPQANSPSLSKYSMARASAANS 415

Query: 418 PFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPL 477
           PF++PL+DDDSLMSCPPFSVPNYM+PTVSAKAK R NSNPKERFPGTP+SE +RRLSFPL
Sbjct: 416 PFNLPLKDDDSLMSCPPFSVPNYMSPTVSAKAKERANSNPKERFPGTPTSE-KRRLSFPL 474

Query: 478 TQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPATVGRKPFNRFV 537
           TQGIGSFKW KGS   TSKDSSSQR LD++QSLQSIGNLSVDSTVSMPAT  RKPFNRFV
Sbjct: 475 TQGIGSFKWNKGSF--TSKDSSSQRGLDRHQSLQSIGNLSVDSTVSMPAT--RKPFNRFV 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121980|ref|XP_002330701.1| predicted protein [Populus trichocarpa] gi|222872305|gb|EEF09436.1| predicted protein [Populus trichocarpa]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/540 (78%), Positives = 461/540 (85%), Gaps = 15/540 (2%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVF P+SK+KLANESDK+S KEKKKKG GKLRHGET SFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFLPNSKDKLANESDKRSAKEKKKKGRGKLRHGETTSFIPLFREPSS 60

Query: 61  IEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRP 120
           IEKIL EAERE KL+FRPPTPPEQPTTPPFV  R ASPRV SQR+TSPR ASPR      
Sbjct: 61  IEKILDEAEREHKLIFRPPTPPEQPTTPPFVPPRSASPRVASQRVTSPRAASPR------ 114

Query: 121 VSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRA 177
               AASPR ASPRAASPR  Q  +E   RPEPTLR  HASATKIQAAYRGY+ARRSFRA
Sbjct: 115 ----AASPRVASPRAASPRNAQRHKEIYYRPEPTLRNHHASATKIQAAYRGYVARRSFRA 170

Query: 178 LKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDKE 237
           LKGLVRLQGV+RGQNVKRQT NAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQ+KNDKE
Sbjct: 171 LKGLVRLQGVIRGQNVKRQTMNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQNKNDKE 230

Query: 238 AESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKST 297
            + TLGKW    EAGN EDWD S+LTKEE++AR+QRKVEA++KRERAMAY+YSHQLWK++
Sbjct: 231 VDGTLGKWGQSPEAGNSEDWDDSVLTKEEIDARLQRKVEAVVKRERAMAYSYSHQLWKAS 290

Query: 298 PKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQA 357
           PKSAQ+SL DIRS GFPWWWNWLERQLP  N PE+ A+KNFQLTPPRP+SEIKPSPR  +
Sbjct: 291 PKSAQSSLMDIRSNGFPWWWNWLERQLPPTNPPESQALKNFQLTPPRPHSEIKPSPRPPS 350

Query: 358 STHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKYSRARVSGAAS 417
           S+HKQ +  F NMDTPTP+S+KST   +TRP R+P        SPSLS+YSRAR SG  S
Sbjct: 351 SSHKQQHLGFDNMDTPTPRSSKSTAFVSTRPARTPLLRTPQANSPSLSRYSRARASGGNS 410

Query: 418 PFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQRRLSFPL 477
           PFD+PL+DDDSL SCPPFSVPNYMTPT SAKAK R  SNPKERFPGTP+SE +RRLSFPL
Sbjct: 411 PFDLPLKDDDSLTSCPPFSVPNYMTPTASAKAKTRAYSNPKERFPGTPNSE-KRRLSFPL 469

Query: 478 TQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPATVGRKPFNRFV 537
           TQGIGSFKW KGS   TSKDSSSQR LDK+QSLQSIG+LSVDSTVSMPATVGR+PFNRFV
Sbjct: 470 TQGIGSFKWNKGSFF-TSKDSSSQRGLDKHQSLQSIGDLSVDSTVSMPATVGRRPFNRFV 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475589|ref|XP_003608080.1| IQ domain-containing protein [Medicago truncatula] gi|355509135|gb|AES90277.1| IQ domain-containing protein [Medicago truncatula]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/552 (69%), Positives = 436/552 (78%), Gaps = 33/552 (5%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWF+AIKRVFT HSK K   +S+ KSTKEKKK G+GKL+HGETNSFIPLFR PSS
Sbjct: 1   MGKKGSWFAAIKRVFTHHSKGK---DSENKSTKEKKK-GVGKLKHGETNSFIPLFREPSS 56

Query: 61  IEKILGEAEREQK-LVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPR 119
           IEKI G+ EREQ+ L  RPPTPPE+P TPPFV  RVASPR PS +  SPR  SPR ASPR
Sbjct: 57  IEKIFGDFEREQQVLAIRPPTPPERPKTPPFVPPRVASPRPPSPKPPSPRDPSPRAASPR 116

Query: 120 PVSPRAASPRAASPRAASPRIVQHR--RERPEPTLRYRHASATKIQAAYRGYMARRSFRA 177
             SP+AAS R          + QH+  R RPEPTL+ +H SATKIQ+AYRGYMAR+SFRA
Sbjct: 117 VTSPKAASSR---------NVHQHKEVRYRPEPTLQNQHVSATKIQSAYRGYMARKSFRA 167

Query: 178 LKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDKE 237
           LKGLVRLQGVVRGQNVKRQT NAMK+MQLLVRVQSQIQSRRIQMLENQAR QA+ KN  E
Sbjct: 168 LKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKN--E 225

Query: 238 AESTLGKWTFG--SEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWK 295
           A STLGK   G  SEAGN+EDWD SLLTKEE+EAR+QRKVEAIIKRER+MA+AYSHQLWK
Sbjct: 226 AGSTLGKSALGHGSEAGNNEDWDDSLLTKEEVEARLQRKVEAIIKRERSMAFAYSHQLWK 285

Query: 296 STPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRV 355
           +TPKS QT + D+RS GFPWWWNWLERQLP +N PE   +KNFQ TPPRP SE K SPR 
Sbjct: 286 ATPKSTQTPVTDMRSSGFPWWWNWLERQLPASNPPEKQVLKNFQFTPPRPYSEQKTSPRP 345

Query: 356 QASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQG--SPSLSKYSRARVS 413
            +S+  Q  F F NMDTPTPKS +STI  ++RP R+P   + PQG  S + SKYSR R  
Sbjct: 346 GSSS--QRPFAFDNMDTPTPKSTRSTIFPSSRPSRTP-PFRTPQGNTSSATSKYSRPRGV 402

Query: 414 GAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPG------TP-S 466
           G+ SPFDVPL+DDDSL SCPPFSVPNYM PTVSAKAKVR +SNP+ERF G      TP S
Sbjct: 403 GSNSPFDVPLKDDDSLTSCPPFSVPNYMAPTVSAKAKVRASSNPRERFGGGSSGCATPTS 462

Query: 467 SESQRRLSFPLTQGIGSFKWKKGSLLSTSKD-SSSQRVLDKNQSLQSIGNLSVDSTVSMP 525
           ++S+RR+SFPL+QGIGSFKW KGS+ S +KD   S R  DK QSL+SIGN+SVDS VS+P
Sbjct: 463 TDSKRRVSFPLSQGIGSFKWNKGSMFSRNKDPHGSHRTPDKYQSLESIGNVSVDSAVSLP 522

Query: 526 ATVGRKPFNRFV 537
           A V RKPF RFV
Sbjct: 523 ARVERKPFTRFV 534

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434116|ref|XP_002276507.1| PREDICTED: protein IQ-DOMAIN 14-like [Vitis vinifera]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/550 (66%), Positives = 431/550 (78%), Gaps = 28/550 (5%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVF P+SKEKL N +++K+ KEKKKKG       +T+SFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFIPNSKEKLVNGTERKNAKEKKKKGR------DTHSFIPLFREPSS 54

Query: 61  IEKILGEAEREQ--KLVFRPPTPPEQPTTPPFVAQRVASPRV---PSQRITSPRVASPRV 115
           IEKILG+AEREQ  K+  RPPTP E P  P  V  RV+SPRV    +        +   V
Sbjct: 55  IEKILGDAEREQQNKIFLRPPTPSETPKVPTPVPPRVSSPRVTSPRAAASPRAAASPRAV 114

Query: 116 ASPRPVSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMAR 172
           ASPR V+   A+    +    +     H +E   RPEPTLR  H +A +IQ AYRGYMAR
Sbjct: 115 ASPRAVASPRAAASPRAASPRA---FHHHKEVSYRPEPTLRNHHIAAIRIQTAYRGYMAR 171

Query: 173 RSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQA-RRQAQ 231
           RSFRAL+GLVRLQGVVRGQNVKRQTTNAMK MQLLVRVQSQIQSRRIQMLENQA +RQ+Q
Sbjct: 172 RSFRALRGLVRLQGVVRGQNVKRQTTNAMKCMQLLVRVQSQIQSRRIQMLENQALQRQSQ 231

Query: 232 HKNDKEAESTLGKWTFG--SEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAY 289
           +KNDKE ES++GKW     SEAGN+EDWD S LTKE++EAR+Q+KVEA+IKRERAMAYAY
Sbjct: 232 YKNDKELESSIGKWASSQPSEAGNNEDWDDSQLTKEQIEARLQKKVEAVIKRERAMAYAY 291

Query: 290 SHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEI 349
           SHQLWK+TPKSAQ S+ DIRSGGFPWWWNWLERQLP AN PE+ A K+  LTP RP  ++
Sbjct: 292 SHQLWKATPKSAQASIMDIRSGGFPWWWNWLERQLPPANPPESQATKSILLTPTRPTPDL 351

Query: 350 KPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPS-SSKIPQGSPS-LSKY 407
           +PSPR QAS ++Q +F F N+++ TPKS+KS +     P R+ +  +++PQ + S LS+Y
Sbjct: 352 RPSPRPQASNYRQQSFGFDNLESLTPKSSKSAV-----PARAKTPPNRVPQANGSNLSRY 406

Query: 408 SRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSS 467
            + R S A S FDVPLRDDDSL SCPPFSVPNYMTPTVSAKAKVR NSNPKER+P TPS+
Sbjct: 407 PKPRASAADSTFDVPLRDDDSLTSCPPFSVPNYMTPTVSAKAKVRANSNPKERYPVTPSA 466

Query: 468 ESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPAT 527
           ES+RRLSFPL QGIGSFKW KG+L S SKDS+SQRV++++QSLQS GNLSVDSTVS+PAT
Sbjct: 467 ESKRRLSFPLGQGIGSFKWNKGTLFS-SKDSTSQRVIERHQSLQSTGNLSVDSTVSLPAT 525

Query: 528 VGRKPFNRFV 537
           VGRKPFNRFV
Sbjct: 526 VGRKPFNRFV 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500106|ref|XP_003518875.1| PREDICTED: protein IQ-DOMAIN 14-like [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/552 (69%), Positives = 427/552 (77%), Gaps = 33/552 (5%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVFT HSK K  +  + K TKEKKK  LGKL+HGETNSFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFTHHSKGK--DSDNNKGTKEKKK-SLGKLKHGETNSFIPLFREPSS 57

Query: 61  IEKILGEAEREQKLV-FRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPR 119
           IEKI G+ EREQ+L+  RP TPPE+P TPP+V  R  SPR PS R  SPR  SPR ASPR
Sbjct: 58  IEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRAPSPRPPSPRAASPR 117

Query: 120 PVSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMARRSFR 176
                 ASPR  SP+AAS RI  H +E   RPEPTLR +HA+ATKIQ+ YRGYMARRSFR
Sbjct: 118 -----VASPRVTSPKAASSRIAHHHKEVGYRPEPTLRQQHATATKIQSVYRGYMARRSFR 172

Query: 177 ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDK 236
           ALKGLVRLQGVVRGQNVKRQT NAMK+MQLLVRVQSQIQSRRIQMLENQAR QA  KNDK
Sbjct: 173 ALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQADFKNDK 232

Query: 237 EAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKS 296
           +A S LGK T  SEAGN E+WD SLLTKEE+EAR+QRKVEAIIKRERAMA+AYSHQLWK+
Sbjct: 233 DAASILGKLT--SEAGN-EEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKA 289

Query: 297 TPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPR-- 354
           TPKS  T + D RS GFPWWWNWLERQ P A   E  ++KNFQ+TPPRP SE K SPR  
Sbjct: 290 TPKSTHTPMTDTRSSGFPWWWNWLERQTPAATPQERQSLKNFQITPPRPYSEQKTSPRPG 349

Query: 355 -----VQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQG--SPSLSKY 407
                   S  +Q +  F NMDTPTPKS KSTI+ +++PVR P   + PQ   S S SKY
Sbjct: 350 SSTQRQPQSQQQQPHVSFDNMDTPTPKSTKSTIVASSKPVRMP-PFRTPQANSSGSGSKY 408

Query: 408 SRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTP-S 466
            R R  G+ SPFD+PL+DDDSL SCPPFSVPNYM PT+SA+AK R +SNP+ER  GTP S
Sbjct: 409 PRPRDVGSNSPFDLPLKDDDSLTSCPPFSVPNYMAPTLSARAKARASSNPRERLGGTPTS 468

Query: 467 SESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPA 526
           ++S+RRLSFPL+QGIGSFKW KG    +SKD   QRV DK QSL+SIGN+SVDSTVS+PA
Sbjct: 469 TDSKRRLSFPLSQGIGSFKWSKG---FSSKD---QRVPDKFQSLESIGNVSVDSTVSLPA 522

Query: 527 -TVGRKPFNRFV 537
             VGRKPF RFV
Sbjct: 523 RVVGRKPFTRFV 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521459|ref|XP_003529373.1| PREDICTED: protein IQ-DOMAIN 14-like isoform 1 [Glycine max]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/550 (68%), Positives = 430/550 (78%), Gaps = 30/550 (5%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVFT HSK K   +SD     ++KKK LGKL+HGE NSFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFTHHSKGK--QDSDNNKGTKEKKKSLGKLKHGEANSFIPLFREPSS 58

Query: 61  IEKILGEAEREQKLV-FRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPR 119
           IEKI G+ EREQ+L+  RP TPPE+P TPP+   R  SPR PS R+ SPR  SPR ASPR
Sbjct: 59  IEKIFGDFEREQQLLGLRPATPPERPKTPPYAPPRAPSPRPPSPRVPSPRPPSPRAASPR 118

Query: 120 PVSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMARRSFR 176
                AASPR  SP+A S RI  H +E   RPEPTLR + ASATKIQ+ YRGYMARRSFR
Sbjct: 119 -----AASPRVTSPKATSSRIAHHHKEVGHRPEPTLRQQQASATKIQSVYRGYMARRSFR 173

Query: 177 ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDK 236
           ALKGLVRLQGVV+GQNVKRQT NAMK+MQLLVRVQ QIQSRRIQMLENQAR QA  KNDK
Sbjct: 174 ALKGLVRLQGVVKGQNVKRQTVNAMKHMQLLVRVQCQIQSRRIQMLENQARYQADFKNDK 233

Query: 237 EAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKS 296
           +A S LGK T  SEAGN E+WD SLLTKEE+EAR+QRKVEAIIKRERAMA+AYSHQLWK+
Sbjct: 234 DAASILGKLT--SEAGN-EEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKA 290

Query: 297 TPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQ 356
           TPKS  T + D RSGGFPWWWNWLERQ P A   E  ++KNFQ+TPPRP SE K SPR  
Sbjct: 291 TPKSTHTPVTDTRSGGFPWWWNWLERQTPAATPQERQSLKNFQITPPRPYSEQKTSPRPG 350

Query: 357 AST-----HKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQ--GSPSLSKYSR 409
           +ST      +Q +F F NMDTPTPKS KSTI+T+++P R+P   + PQ  GS S S+Y R
Sbjct: 351 SSTQRQPQQQQPHFAFDNMDTPTPKSTKSTIVTSSKPARTP-PFRTPQANGSGSGSRYPR 409

Query: 410 ARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTP-SSE 468
            R  G+ SPFDVPL+DDDSL SCPPFSVPNYM PT+SA+AKVR +SNP+ER  GTP S++
Sbjct: 410 PRGVGSNSPFDVPLKDDDSLTSCPPFSVPNYMAPTLSARAKVRASSNPRERLGGTPTSTD 469

Query: 469 SQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPA-T 527
           S+RRLSFPL+QGIGSFKW KG    ++KD   QR+ DK QSL+SIGN+SVDSTVS+PA  
Sbjct: 470 SKRRLSFPLSQGIGSFKWSKG---FSNKD---QRIPDKFQSLESIGNVSVDSTVSLPARV 523

Query: 528 VGRKPFNRFV 537
           VGRKPF RFV
Sbjct: 524 VGRKPFTRFV 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521461|ref|XP_003529374.1| PREDICTED: protein IQ-DOMAIN 14-like isoform 2 [Glycine max]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/550 (67%), Positives = 426/550 (77%), Gaps = 34/550 (6%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIKRVFT HSK K   +SD     ++KKK LGKL+HGE NSFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKRVFTHHSKGK--QDSDNNKGTKEKKKSLGKLKHGEANSFIPLFREPSS 58

Query: 61  IEKILGEAEREQKLV-FRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPR 119
           IEKI G+ EREQ+L+  RP TPPE+P TPP+   R  SPR PS R+ SPR  SPR ASPR
Sbjct: 59  IEKIFGDFEREQQLLGLRPATPPERPKTPPYAPPRAPSPRPPSPRVPSPRPPSPRAASPR 118

Query: 120 PVSPRAASPRAASPRAASPRIVQHRRE---RPEPTLRYRHASATKIQAAYRGYMARRSFR 176
                AASPR  SP+A S RI  H +E   RPEPTLR + ASATKIQ+ YRGYMARRSFR
Sbjct: 119 -----AASPRVTSPKATSSRIAHHHKEVGHRPEPTLRQQQASATKIQSVYRGYMARRSFR 173

Query: 177 ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDK 236
           ALKGLVRLQGVV+GQNVKRQT NAMK+MQLLVRVQ QIQSRRIQMLENQAR QA  KNDK
Sbjct: 174 ALKGLVRLQGVVKGQNVKRQTVNAMKHMQLLVRVQCQIQSRRIQMLENQARYQADFKNDK 233

Query: 237 EAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKS 296
           +A   +      SEAGN E+WD SLLTKEE+EAR+QRKVEAIIKRERAMA+AYSHQLWK+
Sbjct: 234 DAAKLI------SEAGN-EEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKA 286

Query: 297 TPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQ 356
           TPKS  T + D RSGGFPWWWNWLERQ P A   E  ++KNFQ+TPPRP SE K SPR  
Sbjct: 287 TPKSTHTPVTDTRSGGFPWWWNWLERQTPAATPQERQSLKNFQITPPRPYSEQKTSPRPG 346

Query: 357 AST-----HKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQ--GSPSLSKYSR 409
           +ST      +Q +F F NMDTPTPKS KSTI+T+++P R+P   + PQ  GS S S+Y R
Sbjct: 347 SSTQRQPQQQQPHFAFDNMDTPTPKSTKSTIVTSSKPARTP-PFRTPQANGSGSGSRYPR 405

Query: 410 ARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTP-SSE 468
            R  G+ SPFDVPL+DDDSL SCPPFSVPNYM PT+SA+AKVR +SNP+ER  GTP S++
Sbjct: 406 PRGVGSNSPFDVPLKDDDSLTSCPPFSVPNYMAPTLSARAKVRASSNPRERLGGTPTSTD 465

Query: 469 SQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKNQSLQSIGNLSVDSTVSMPA-T 527
           S+RRLSFPL+QGIGSFKW KG    ++KD   QR+ DK QSL+SIGN+SVDSTVS+PA  
Sbjct: 466 SKRRLSFPLSQGIGSFKWSKG---FSNKD---QRIPDKFQSLESIGNVSVDSTVSLPARV 519

Query: 528 VGRKPFNRFV 537
           VGRKPF RFV
Sbjct: 520 VGRKPFTRFV 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582195|ref|XP_002531890.1| conserved hypothetical protein [Ricinus communis] gi|223528457|gb|EEF30489.1| conserved hypothetical protein [Ricinus communis]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 300/396 (75%), Positives = 336/396 (84%), Gaps = 23/396 (5%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEKLANESDKKSTKEKKKKGLGKLRHGETNSFIPLFRGPSS 60
           MGKKGSWFSAIK+VF PH KEKLANESD+KSTKEKKKKGLGKLRHG+TNSFIPLFR PSS
Sbjct: 1   MGKKGSWFSAIKKVFLPHPKEKLANESDRKSTKEKKKKGLGKLRHGDTNSFIPLFREPSS 60

Query: 61  IEKILGEAEREQKLVFRPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRP 120
           IEKIL EAERE KL+FRPPTPPEQP TPPFV  R ASP+VPSQR+TSPR ASPRV+SPR 
Sbjct: 61  IEKILDEAEREHKLIFRPPTPPEQPRTPPFVP-RAASPKVPSQRVTSPRAASPRVSSPRA 119

Query: 121 VSPRAASPRAASPRAASPRIVQHRRE----RPEPTLRYRHASATKIQAAYRGYMARRSFR 176
            SP+ ASPRA SP+ A      HR +    RPEPTL+  HASATKIQAAYRGY+ARRSFR
Sbjct: 120 ASPKVASPRAPSPKNA------HRHKEIYYRPEPTLKNHHASATKIQAAYRGYIARRSFR 173

Query: 177 ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQHKNDK 236
           ALKGLVRLQGVVRGQ+VKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQ++NDK
Sbjct: 174 ALKGLVRLQGVVRGQSVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQAQYRNDK 233

Query: 237 EAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKS 296
           E ES            N+EDWD SLLTKEE+EAR+QRKV A+IKRERAMAYAYSHQLWKS
Sbjct: 234 EVES------------NNEDWDDSLLTKEEIEARLQRKVNAVIKRERAMAYAYSHQLWKS 281

Query: 297 TPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSEIKPSPRVQ 356
           TPKSAQ++LADIRS GFPWWWNWLERQLP ++TP+  A+K+FQLTP R +SE+KPSPR  
Sbjct: 282 TPKSAQSALADIRSNGFPWWWNWLERQLPPSSTPDNQAIKHFQLTPSRLHSELKPSPRPS 341

Query: 357 ASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSP 392
           +S +KQH+F F +MDTPTP+S+KS    +TR  R+P
Sbjct: 342 SSNNKQHHFAFDSMDTPTPRSSKSVAFMSTRQARTP 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509834|gb|AFK42983.1| unknown [Lotus japonicus]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/377 (72%), Positives = 310/377 (82%), Gaps = 16/377 (4%)

Query: 170 MARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARRQ 229
           MARRSFRALKGLVRLQGVVRGQNVKRQT NAMK+MQLLVRVQSQIQSRRIQ LENQAR Q
Sbjct: 1   MARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQTLENQARYQ 60

Query: 230 AQHKNDKEAESTLGKWTFG--SEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAY 287
           A+ KNDK+A ST GK T G  SEAGN+E+WD S+L KEE++AR+QRKVEA+IKRERAMA+
Sbjct: 61  AEFKNDKDAASTFGKRTLGHGSEAGNNEEWDDSILKKEEVDARLQRKVEAMIKRERAMAF 120

Query: 288 AYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNS 347
           AYSHQLWK+TPKS QT + D RSGGFPWWWNWLERQLP AN  E   +KNFQLTP RP S
Sbjct: 121 AYSHQLWKATPKSTQTPVTDTRSGGFPWWWNWLERQLPAANPQEKQILKNFQLTPSRPYS 180

Query: 348 EIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKY 407
           E K SPR  +ST +QHNF F NMDTPTPKS KSTILT+++P R+P   + PQ     +K+
Sbjct: 181 EQKTSPRPGSSTPRQHNFAFDNMDTPTPKSTKSTILTSSKPARTP-PYRTPQ-----AKH 234

Query: 408 SRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERF-----P 462
            R+R  GA SPFDVPLRDDDSL SCPPFSVP+YM PTVSA+AKVR NSNP+ERF      
Sbjct: 235 PRSRALGAKSPFDVPLRDDDSLTSCPPFSVPSYMAPTVSAQAKVRANSNPRERFGGSVGG 294

Query: 463 GTPSSESQRRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQRVLDKN--QSLQSIGNLSVDS 520
           GTPSS+S+RRLSFPL+QGIGSFKW KGSL S SK  +SQR  D N  Q+L+SIGN+SVDS
Sbjct: 295 GTPSSDSKRRLSFPLSQGIGSFKWTKGSLFS-SKVPNSQRTPDNNKFQTLESIGNVSVDS 353

Query: 521 TVSMPATVGRKPFNRFV 537
           T+S+PA VGRKPF RFV
Sbjct: 354 TLSLPARVGRKPFTRFV 370

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817274|ref|XP_002876520.1| IQ-domain 13 [Arabidopsis lyrata subsp. lyrata] gi|297322358|gb|EFH52779.1| IQ-domain 13 [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 314/558 (56%), Positives = 388/558 (69%), Gaps = 69/558 (12%)

Query: 1   MGKKGSWFSAIKRVFTPHSKEK-LAN-----ESDKKSTKEKKKKGLGKLRHGETNSFIPL 54
           MGKKG+WFSAIKRVFTPHSKEK L+N     E   ++ ++KKK    K+R+GETNSF+P+
Sbjct: 1   MGKKGNWFSAIKRVFTPHSKEKQLSNNNQEPERKSENKEKKKKGFGKKIRNGETNSFLPI 60

Query: 55  FRGPSSIEKILGEAEREQKLVFRPPTPPEQ----PTTPPFVAQRVASPRVPSQRITSPRV 110
           F  PSSIEKIL EAERE  LVFRPP+P ++     T+ P  + R+ASP+VPSQR     V
Sbjct: 61  FGQPSSIEKILCEAEREHNLVFRPPSPTDRTKASSTSVPSPSVRLASPKVPSQRY----V 116

Query: 111 ASPRVASPRPVSPRAASPRAASPRAASPRIVQHRR--ERPEPTLRYRHASATKIQAAYRG 168
           +SP+  SPR  SPR  SP+  SPRA SP+IV  R    RPEP+L  ++A ATKIQAA+RG
Sbjct: 117 SSPKPISPRVASPRVPSPKPPSPRAVSPKIVLQREFVHRPEPSLLVKNAYATKIQAAFRG 176

Query: 169 YMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQMLENQARR 228
           YMARRSFRALKGLVRLQGVVRG +VKRQT NAMKYMQLLVRVQ+Q+QSRRIQMLEN+A+ 
Sbjct: 177 YMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQVQSRRIQMLENRAK- 235

Query: 229 QAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMAYA 288
               K+D +  S+L            EDWD S+LTKEE +AR+ RK++A+IKRER+MAYA
Sbjct: 236 --NDKDDTKLASSLAS----------EDWDDSVLTKEEKDARLHRKIDAMIKRERSMAYA 283

Query: 289 YSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKNFQLTPPRPNSE 348
           YSHQLWK++PKSAQ    DI + GFP WWNW++RQ    N P       F+LTP RP+  
Sbjct: 284 YSHQLWKNSPKSAQ----DIITSGFPLWWNWVDRQ-KNQNQP-------FRLTPTRPSPS 331

Query: 349 IKPSPRVQASTHKQHNFEFSN-MDTPTPKSAKSTILTATRPVRSPSSSKIPQGSPSLSKY 407
                  Q  +  Q++F  +N  DT TP S+KST +T +RP+ +P        S S+S+Y
Sbjct: 332 ------PQPQSSSQNHFRLNNSFDTSTPNSSKSTFVTPSRPIHTPQPY-----SGSVSRY 380

Query: 408 SRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTP-S 466
           SR    G  +  D P +DDDSL SCPPFS P+YM PTVSAKAK+R NSNPKER   TP S
Sbjct: 381 SRG---GGRATQDSPFKDDDSLTSCPPFSAPSYMAPTVSAKAKLRANSNPKERMDRTPVS 437

Query: 467 SESQRRLSFPLTQGIGSFKWKKGSLLSTSK--------DSSSQRVLDKNQSLQSIGNLSV 518
           +  +RR SFPL    GSFKW KGSL  +S          SS   VL+K+++L+S+GNLS+
Sbjct: 438 TNEKRRSSFPL----GSFKWNKGSLFMSSNSNNKGPGSSSSGAVVLEKHKTLKSVGNLSI 493

Query: 519 DSTVSMPATVGRKPFNRF 536
           DSTVSMPAT+GR+ FNRF
Sbjct: 494 DSTVSMPATIGRRAFNRF 511

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.301	0.313	0.574	2.8e-111
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.374	0.300	0.517	2.7e-105
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.567	0.661	0.337	1.1e-40
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.538	0.672	0.308	2.7e-27
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.523	0.665	0.308	1.9e-22
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.504	0.651	0.312	2.8e-22
TAIR|locus:2066226	527	Iqd4 "AT2G26410" [Arabidopsis	0.445	0.453	0.338	1e-19
TAIR|locus:2055430	263	iqd9 "AT2G33990" [Arabidopsis	0.379	0.775	0.278	1.2e-17
TAIR|locus:2181635	443	IQD11 "AT5G13460" [Arabidopsis	0.482	0.584	0.287	7.1e-16
TAIR|locus:2150650	403	IQD12 "AT5G03960" [Arabidopsis	0.264	0.352	0.315	1.5e-14

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
 Identities = 104/181 (57%), Positives = 123/181 (67%)

Query:   140 IVQHRR--ERPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQT 197
             IVQ R    RPEP+L  ++A A KIQAA+RGYMARRSFRALKGLVRLQGVVRG +VKRQT
Sbjct:   151 IVQRREFVHRPEPSLLVKNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQT 210

Query:   198 TNAMKYMQLLXXXXXXXXXXXXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDW 257
              NAMKYMQLL             MLEN+AR      NDK+ ++ L      S     +DW
Sbjct:   211 MNAMKYMQLLVRVQTQVQSRRIQMLENRAR------NDKD-DTKL----VSSRMS--DDW 257

Query:   258 DASLLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWW- 316
             D S+LTKEE + R+ RK++A+IKRER+MAYAYSHQLWK++PKSAQ       SG   WW 
Sbjct:   258 DDSVLTKEEKDVRLHRKIDAMIKRERSMAYAYSHQLWKNSPKSAQDIRT---SGFPLWWN 314

Query:   317 W 317
             W
Sbjct:   315 W 315

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 2.7e-105, Sum P(3) = 2.7e-105
 Identities = 116/224 (51%), Positives = 140/224 (62%)

Query:   144 RRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNA 200
             RRE   RPEPTL  +HASATKIQ A+RGYMAR+SFRALKGLVRLQGVVRG +VKRQT NA
Sbjct:   308 RREIVYRPEPTLPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINA 367

Query:   201 MKYMQLLXXXXXXXXXXXXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDAS 260
             MKYMQ +             MLENQA    Q + D EA     KW   SEAGN ++WD S
Sbjct:   368 MKYMQQVVRVQSQIQSRRIKMLENQA----QVEKD-EA-----KWA-ASEAGN-DNWDDS 415

Query:   261 LLTKEEMEARMQRKVEAIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWL 320
             +LTKEE ++R QRK +AIIKRER+MAYAYS +LWK++PKS Q    D RS    W W   
Sbjct:   416 VLTKEERDSRSQRKTDAIIKRERSMAYAYSRKLWKNSPKSTQ----DNRSFPQWWNWVDR 471

Query:   321 ERQLPGANTPETSAMKNFQLTP----PRPNSEIKPSPRVQASTH 360
             +  L       +   ++F+LTP    P P S+      ++   H
Sbjct:   472 QNPLASPAPSYSQPQRDFRLTPSRLCPSPLSQSSKQHHIRLDNH 515

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 115/341 (33%), Positives = 175/341 (51%)

Query:   157 ASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXX 216
             A+A  IQ  +RGY+ARR+ RA++GLVRL+ ++ G  VKRQ  N +K MQ L         
Sbjct:   116 AAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQIRA 175

Query:   217 XXXXMLE-NQAR-RQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRK 274
                 M E NQAR +Q   K+ KE          G + G  ++W+ S+ +KE++EA +  K
Sbjct:   176 RRIRMSEENQARQKQLLQKHAKELA--------GLKNG--DNWNDSIQSKEKVEANLLSK 225

Query:   275 VEAIIKRERAMAYAYSHQL-WKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETS 333
              EA ++RERA+AY+YSHQ  WK+  KS      D  +    W W+WLER + G   P  S
Sbjct:   226 YEATMRRERALAYSYSHQQNWKNNSKSGNPMFMDPSNP--TWGWSWLERWMAGR--PLES 281

Query:   334 AMKNFQLTPPRPNS-EIKPS-PRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPVRS 391
             + K  Q      N+  +K S  R +A+     N    +    TP SA+ T          
Sbjct:   282 SEKE-QSNSNNDNAASVKGSINRNEAAKSLTRN---GSTQPNTPSSARGTPRNKNSFFSP 337

Query:   392 PSSSKIPQGS-PSLSKYSRARVSGAA------SPFDVPLRDDDSLMSCPPFSVPNYMTPT 444
             P+ S++ Q S  S    S++ +S  +      S     +RDD+SL   P  ++P+YM PT
Sbjct:   338 PTPSRLNQSSRKSNDDDSKSTISVLSERNRRHSIAGSSVRDDESLAGSP--ALPSYMVPT 395

Query:   445 VSAKAKVRPNS----NPKERFPGTPSSESQRRLSFPLTQGI 481
              SA+A+++P S      +E    T  + +++RLS+P +  +
Sbjct:   396 KSARARLKPQSPLGGTTQENEGFTDKASAKKRLSYPTSPAL 436

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 103/334 (30%), Positives = 166/334 (49%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +A KIQ A+RGYMARR+ RAL+GLVRL+ +V+G+ V+RQ T+ ++ MQ L          
Sbjct:   110 AAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQIRER 169

Query:   218 XXXMLEN-QA-RRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKV 275
                + E+ QA  RQ Q K++K+ + T          G  E+W+ S L++E++EA M  K 
Sbjct:   170 RLRLSEDKQALTRQLQQKHNKDFDKT----------G--ENWNDSTLSREKVEANMLNKQ 217

Query:   276 EAIIKRERAMAYAYSHQ-LWKSTPKSAQTSLADIRSGGFPWWWNWLERQL---PGAN--- 328
              A ++RE+A+AYA+SHQ  WK++ K    +  D  +    W W+WLER +   P  N   
Sbjct:   218 VATMRREKALAYAFSHQNTWKNSTKMGSQTFMDPNNPH--WGWSWLERWMAARPNENHSL 275

Query:   329 TPETSAM-KNFQLTPPRPNSEIKP-----SPRVQASTHKQHNFEFSNMDTPTPKSAKSTI 382
             TP+ +    + +    R  SE+ P     SPR +    ++ +        P+  S     
Sbjct:   276 TPDNAEKDSSARSVASRAMSEMIPRGKNLSPRGKTPNSRRGSSPRVRQ-VPSEDSNSIVS 334

Query:   383 LTATRPV--RSPSSSKIP--QGSPSL-SKYSRARVSGAASPFDVPLRDDDSLMSCPPFSV 437
               + +P   R  +   IP  +   S  S +S++ V G  +P         +  +   FS 
Sbjct:   335 FQSEQPCNRRHSTCGSIPSTRDDESFTSSFSQS-VPGYMAP-------TQAAKARARFSN 386

Query:   438 PNYMTPTVSAKAKVRPNSNPK--ERFPGTPSSES 469
              + ++   +AK ++  + +PK   RF G P  ES
Sbjct:   387 LSPLSSEKTAKKRLSFSGSPKTVRRFSGPPKLES 420

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 99/321 (30%), Positives = 155/321 (48%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +AT+IQ AYRG++ARR+ RALKGLVRLQ +VRG  V++Q    ++ MQ L          
Sbjct:    90 AATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARVRAR 149

Query:   218 XXXM-LENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVE 276
                + LE ++    Q    + A+    +     E    E W  S+ + E+++A++ ++ E
Sbjct:   150 RVRLALELESETSQQTLQQQLADEARVR-----EI--EEGWCDSIGSVEQIQAKLLKRQE 202

Query:   277 AIIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFP----WWWNWLERQLPGANTPET 332
             A  KRERAMAYA +HQ W+     A T L    SG  P    W WNWLER +  A  P  
Sbjct:   203 AAAKRERAMAYALTHQ-WQ-----AGTRLLSAHSGFQPDKNNWGWNWLERWM--AVRPWE 254

Query:   333 SAMKNFQLTPPRPNSEIKPSPRVQA-STHKQHNFEFSNM-DTPTPKSAKSTILTATRPVR 390
             +   +  L   R ++++  +   Q+ +  K      S M +T    S  S+ +T   P +
Sbjct:   255 NRFLDSNL---RDDAKLGENGMEQSENVPKTQIKSVSKMPNTSNLVSGVSSQMTG--PCQ 309

Query:   391 SPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSL-MSCPPFSVP-NYMTPTVSAK 448
             S   S  P  S S+   S+A+          P +DD ++ ++  P + P ++  P   ++
Sbjct:   310 SDGDSSSPGISSSIPVVSKAKSK--------PAKDDLAVEVNSRPGAGPRSHSNPKERSR 361

Query:   449 AKVRPNSNPKERFPGTPSSES 469
                 PN + KER     S +S
Sbjct:   362 ---EPNRSSKERLSLPNSGKS 379

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 96/307 (31%), Positives = 147/307 (47%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +A +IQ A+RG++ARR+ RALKG+VRLQ +VRG+ V++Q    ++ MQ L          
Sbjct:    86 AAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRAR 145

Query:   218 XXXM-LENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVE 276
                M +E QA ++    ++   +S L K     E    E W     T +++++++Q++ E
Sbjct:   146 RVRMTVEGQAVQKLL--DEHRTKSDLLK-----EV--EEGWCDRKGTVDDIKSKLQQRQE 196

Query:   277 AIIKRERAMAYAYSHQLWKSTPKS---AQTSLADIRSGGFP---WWWNWLERQLPGANTP 330
                KRERA+AYA + + W+ST  S     +S++ ++S  F    W W+WLER +  A   
Sbjct:   197 GAFKRERALAYALAQKQWRSTTSSNLKTNSSISYLKSQEFDKNSWGWSWLERWM-AARPW 255

Query:   331 ETSAMKNFQLT---PPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATR 387
             ET  M         PP P+  +K SP        + N    N+ T         +L+++ 
Sbjct:   256 ETRLMDTVDTAATPPPLPHKHLK-SPETADVVQVRRN----NVTTRVSAKPPPHMLSSSP 310

Query:   388 PVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSA 447
                   SS    GS S+   S   VSG        L  D+S         P+YM+ T S 
Sbjct:   311 GYEFNESS----GSSSICT-STTPVSGKTG-----LVSDNSSSQAKKHK-PSYMSLTEST 359

Query:   448 KAKVRPN 454
             KAK R N
Sbjct:   360 KAKRRTN 366

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2066226 Iqd4 "AT2G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 90/266 (33%), Positives = 132/266 (49%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +A KIQ AYR Y ARR+ RAL+G+ RL+ +++G+ VKRQ    +  MQ L          
Sbjct:   150 AAIKIQNAYRCYTARRTLRALRGMARLKSLLQGKYVKRQMNAMLSSMQTLTRLQTQIQER 209

Query:   218 XXXM-LENQAR-RQAQHK-NDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRK 274
                +  EN+ R R  Q K + KE    L        AGN   +D+S  +KE++ AR   +
Sbjct:   210 RNRLSAENKTRHRLIQQKGHQKENHQNL------VTAGN---FDSSNKSKEQIVARSVNR 260

Query:   275 VEAIIKRERAMAYAYSHQ-LWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETS 333
              EA ++RERA+AYAYSHQ  W+++ K    +L D  +    W W+WLER +  A+ P  +
Sbjct:   261 KEASVRRERALAYAYSHQQTWRNSSKLPHQTLMDTNTTD--WGWSWLERWM--ASRPWDA 316

Query:   334 AMKNFQLTPP----RPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKSTILTATRPV 389
                + Q++      R NS IK SP   A +  Q +   S++  P     KS  +  T   
Sbjct:   317 ESIDDQVSVKSSLKRENS-IKSSP---ARSKTQKSASQSSIQWPVNNDTKSRKIEVTNRR 372

Query:   390 RS--PSSSKIPQGSPSLSKYSRARVS 413
              S    SS+  +   S+   S  R S
Sbjct:   373 HSIGGGSSENAKDDESVGSSSSRRNS 398

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2055430 iqd9 "AT2G33990" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 63/226 (27%), Positives = 108/226 (47%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +AT+IQ A++ Y AR+S R LKG+ R +     Q+VK Q    ++Y+             
Sbjct:    49 AATRIQTAFKAYKARKSLRRLKGIARAKLSTEKQSVKNQAVVTLRYLHSWSKIQSEIKAR 108

Query:   218 XXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEA 277
                M+     +  + ++ ++ E+ L       E     +W+    TK+E+  R+ ++ EA
Sbjct:   109 RVCMVTEWRLKNKRLEHQQKLEAKL----HDVEV----EWNGGSETKDEILERILQREEA 160

Query:   278 IIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLPGANTPETSAMKN 337
              IKRERA+AYA+SHQ WK+  K+    L     G   W W+W ER +  A   E      
Sbjct:   161 TIKRERALAYAFSHQ-WKADGKTQW--LGSYELGNTNWGWSWKERWI-SARPWEV----R 212

Query:   338 FQLTPPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTP-KSAKSTI 382
             + +TP +P S      +  +++  +     S++   TP   A++T+
Sbjct:   213 YSVTPKKPKSS-----KTDSNSPAKRTVSLSSVPAKTPFPGARNTV 253

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2181635 IQD11 "AT5G13460" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 7.1e-16, Sum P(2) = 7.1e-16
 Identities = 84/292 (28%), Positives = 131/292 (44%)

Query:   158 SATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXX 217
             +AT+IQ A+RG++AR++ RALKG+V+LQ  +RG+ V+RQ    +K +Q +          
Sbjct:   113 AATRIQTAFRGHLARKALRALKGIVKLQAYIRGRAVRRQAMTTLKCLQSVVNIQSQVCGK 172

Query:   218 XXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQRKVEA 277
                +          H+ D E  +         +    + WD SLLTKEE EA +  K EA
Sbjct:   173 RTQI------PGGVHR-DYEESNIFNDNILKVDTNGQKRWDDSLLTKEEKEAVVMSKKEA 225

Query:   278 IIKRERAMAYAYSHQLWKSTPKSAQTSLADIRSGGFPWWWNWLERQLP----------GA 327
              ++RER   YA +H+      KSA++      +    W   W++ QL            +
Sbjct:   226 SLRRERIKEYAVTHR------KSAESYQKRSNTKWKYWLDEWVDTQLTKSKELEDLDFSS 279

Query:   328 NT-PETSAMKNFQLTPPRPNSEIKPSPRVQASTHKQHNFEFSNMDTPTPKSAKS-TILTA 385
              T P+   +   QL  PR NS    SPR   + H++      +  +P   +  + T + A
Sbjct:   280 KTKPKDETLNEKQLKTPR-NS----SPRRLVNNHRRQVSIGEDEQSPAAVTITTPTYMVA 334

Query:   386 TRPVRSPSSSKIPQGSPSLSKYSRARVSGAASPFDVPLRDDDSLMSCPPFSV 437
             T   ++ S S     SP +   S    S + SP+   L    S+MS  P  V
Sbjct:   335 TESAKAKSRSL---SSPRIRPRSFDTQSESYSPYKNKLCLTTSMMSEAPSKV 383

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2150650 IQD12 "AT5G03960" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
 Identities = 48/152 (31%), Positives = 82/152 (53%)

Query:   156 HASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXX 215
             + +A KIQ+A+R  +AR++ RALK LVRLQ +VRG+ V+R+ +  +K             
Sbjct:   107 NVAAIKIQSAFRASLARKALRALKALVRLQAIVRGRAVRRKVSALLK-------SSHSNK 159

Query:   216 XXXXXMLENQARRQ--AQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEARMQR 273
                  +++ Q  R+  +  K++ + E  +   +  +       WD+S LTKE+++A   R
Sbjct:   160 ASTSNIIQRQTERKHWSNTKSEIKEELQVSNHSLCNSKVKCNGWDSSALTKEDIKAIWLR 219

Query:   274 KVEAIIKRERAMAYAYSHQLWKSTPKSAQTSL 305
             K E +IKR+R + Y+ S Q  + +P     SL
Sbjct:   220 KQEGVIKRDRMLKYSRS-QRERRSPHMLVESL 250

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIX2422 hypothetical protein (531 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	2e-09
smart00015	23	smart00015, IQ, Calmodulin-binding motif	1e-04
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 413 SGAASPFDVPLRDDDSLMSCPPFSVPNYMTPTVSAKAKVRPNSNPKERFPGTPSSESQ-- 470
           S  +SP +    + D   S    S+PNYM  T SAKAKVR  S P++R P T   ES   
Sbjct: 13  SSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQR-PETEERESGSS 71

Query: 471 --RRLSFPLTQGIGSFKWKKGSLLSTSKDSSSQR 502
             +RLS P      S      S   TS    + R
Sbjct: 72  ATKRLSLP---VSSSSGGSSSSSPRTSGGKGALR 102

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 155 RHASATKIQAAYRGYMARRSFR 176
              +A  IQAA+RGY+AR+ ++
Sbjct: 2   LTRAAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 156 HASATKIQAAYRGYMARRSFR 176
             +A KIQAA+RGY+AR+ ++
Sbjct: 1   RKAAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 77  RPPTPPEQPTTPPFVAQRVASPRVPSQRITSPRVASPRVASPRPVSPRAASPRAASPRAA 136
           +    P     P   A   A+P   +        A+   A+    +P A +   A P  A
Sbjct: 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

Query: 137 SPRIVQ-HRRERPEPTLRYRHASATKIQAAYR 167
           +P  V    R  PEP +     +     AA R
Sbjct: 456 APETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	99.4
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.69
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.04
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	96.83
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.14
PTZ00014	821	myosin-A; Provisional	94.67
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	94.08
COG5022	1463	Myosin heavy chain [Cytoskeleton]	93.04
KOG2128	1401	consensus Ras GTPase-activating protein family - I	87.47
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	83.76
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	82.9

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=99.40  E-value=2.9e-13  Score=119.22  Aligned_cols=45  Identities=40%  Similarity=0.580  Sum_probs=37.9

Q ss_pred             CCCCCCccccccccccCCCCCCCCCCCCC---CcccccccCCCCCCCC
Q 009330          437 VPNYMTPTVSAKAKVRPNSNPKERFPGTP---SSESQRRLSFPLTQGI  481 (537)
Q Consensus       437 ~PnYMA~TESAKAKaRS~SaPkQR~~~tp---~s~aKKRLSFP~~~~~  481 (537)
                      +|||||+|||||||+|+||+||||++...   ...++||+|||+....
T Consensus        34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~   81 (102)
T PF13178_consen   34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNS   81 (102)
T ss_pred             CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCC
Confidence            59999999999999999999999976532   3458999999976653

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.69  E-value=4.2e-05  Score=49.35  Aligned_cols=21  Identities=38%  Similarity=0.793  Sum_probs=19.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHH
Q 009330          156 HASATKIQAAYRGYMARRSFR  176 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lr  176 (537)
                      +.|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999874

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.04  E-value=0.00056  Score=46.16  Aligned_cols=22  Identities=45%  Similarity=0.797  Sum_probs=20.0

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHH
Q 009330          155 RHASATKIQAAYRGYMARRSFR  176 (537)
Q Consensus       155 ee~AAI~IQsAfRGylARR~lr  176 (537)
                      .+.||++||+.||||++|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999884

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=96.83  E-value=0.0026  Score=73.96  Aligned_cols=62  Identities=26%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          155 RHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ  220 (537)
Q Consensus       155 ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R  220 (537)
                      ...+++.||..||||+.|+.|. ..++++-||+.+||.++|++.   + ..-+++.||..+|++..|
T Consensus       672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r  734 (862)
T KOG0160|consen  672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNR  734 (862)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHH
Confidence            3567888999999999999988 778888899999999999821   1 334455555555554443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.14  E-value=0.015  Score=68.39  Aligned_cols=69  Identities=26%  Similarity=0.431  Sum_probs=56.7

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHH------HH-HHHHHHHHHHHHHHHHHHHHh
Q 009330          154 YRHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTN------AM-KYMQLLVRVQSQIQSRRIQML  222 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~------tl-r~mqa~vriQs~iR~rr~R~s  222 (537)
                      ....||..||.-||||+.|+.+. ...=+|++|+.|||+.||+++..      .+ +.+..|-++|.-+|+++.|-.
T Consensus       808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~  884 (975)
T KOG0520|consen  808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL  884 (975)
T ss_pred             cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc
Confidence            35688999999999999999999 77889999999999999999972      22 344677777888888876643

>PTZ00014 myosin-A; Provisional

Probab=94.67  E-value=0.038  Score=64.71  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhh
Q 009330          157 ASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa  197 (537)
                      ..++.||+++|||++|+.|. .+.+++.||+.+||+++++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            36788999999999999888 677888889999998888754

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=94.08  E-value=0.12  Score=60.59  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          154 YRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylARR~lralkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      ..-.+++.||+.+||+++|+........+.+|..+|++..|+++   .....+++.||+.+|+..+|.
T Consensus       694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence            45678999999999999998222445566789999999999999   556688999999999999887

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=93.04  E-value=0.19  Score=61.34  Aligned_cols=64  Identities=27%  Similarity=0.366  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          156 HASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ  220 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R  220 (537)
                      ...|++||+||||++.||++. +++.+..+|.+.+|-.+++..-.. --.....++|..++...-|
T Consensus       745 ~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~r  809 (1463)
T COG5022         745 DNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE-LKWRLFIKLQPLLSLLGSR  809 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc-hHHHhHHHhhHHhHHHhhH
Confidence            567999999999999999988 889888889999998888665322 2345566667666554433

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=87.47  E-value=1.2  Score=54.54  Aligned_cols=68  Identities=24%  Similarity=0.323  Sum_probs=56.4

Q ss_pred             chhhHHHHHHHHHhhHHH---HH-HHH-HHhhHHHHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHH
Q 009330          154 YRHASATKIQAAYRGYMA---RR-SFR-ALKGLVRLQGVVRGQNVKRQTT----NAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylA---RR-~lr-alkglVrLQalvRG~~VRrQa~----~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      ...-.-+.||.+.|||+.   +. .+. ..+.||.+|++.||.++|+...    .-..||...+.||+-+|++..|-
T Consensus       563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~  639 (1401)
T KOG2128|consen  563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK  639 (1401)
T ss_pred             hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence            456668899999999993   22 233 7889999999999999999987    35589999999999999988764

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=83.76  E-value=0.95  Score=29.04  Aligned_cols=19  Identities=21%  Similarity=0.302  Sum_probs=14.5

Q ss_pred             hhHHHHHHHhhhhhhhhhh
Q 009330          179 KGLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       179 kglVrLQalvRG~~VRrQa  197 (537)
                      +++|.||+.+||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4577788888888888765

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=82.90  E-value=3.5  Score=48.00  Aligned_cols=53  Identities=21%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009330          157 ASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRI  219 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lralkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~  219 (537)
                      .-++.||.++||+++|..|+.++....|-...|.+.+          -..+..||.++|+.+.
T Consensus       697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~----------ks~v~el~~~~rg~k~  749 (1001)
T KOG0164|consen  697 SLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKL----------KSYVQELQRRFRGAKQ  749 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhh
Confidence            4588999999999999999965554433113332111          1235567777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-06
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	4e-06
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	9e-04
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 18/155 (11%), Positives = 45/155 (29%), Gaps = 9/155 (5%)

Query: 139 RIVQHRRERPEPTLRYRHASATKIQAAYRGYMARRSFRAL---KGLVRLQGVVRGQNVKR 195
           + +  ++   E   R    S   +Q+    +   +        + +  L+ +      K 
Sbjct: 772 QWINDKQASLE--SRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKL 829

Query: 196 QTTNAMKYMQLLVRVQSQIQSRRI----QMLENQARRQAQHKNDKEAESTLGKWTFGSEA 251
           +      ++       ++I S          E+    + + K  K+    L K+    + 
Sbjct: 830 RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK 889

Query: 252 GNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMA 286
             +     S+             V+A +K   A  
Sbjct: 890 LENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 924

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 12/135 (8%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 155 RHASATKIQAAYRGYMARRSF----RALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRV 210
           +     +     +    +++          +  +Q  +     + + T      Q +  +
Sbjct: 760 KSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKTEKPPKGQEVSEL 818

Query: 211 QSQIQSR--RIQMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEME 268
           ++   S   ++++++ +           E +ST        E    E           +E
Sbjct: 819 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL----EKAEQE-----HAEALRIE 869

Query: 269 ARMQRKVEAIIKRER 283
            + Q+K+  ++++  
Sbjct: 870 LKRQKKIAVLLQKYN 884

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 20/149 (13%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRALK-GLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQ 211
               A+  +IQ   RG++ R+ +  ++   + +Q  VRG    R     ++  +  + +Q
Sbjct: 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQA-RCYATFLRRTRAAIIIQ 823

Query: 212 SQIQSR--------------RIQMLE--NQARRQAQHKNDKEAESTLGKWTFGSEAGNH- 254
              +                 +Q L      R + Q    +     + K   G  A  H 
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883

Query: 255 -EDWDASLLTKEEMEARMQRKVEAIIKRE 282
                A +  +      M ++    +K E
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIE 912

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 22/157 (14%)

Query: 144 RRERPEPTLRYRHASATKIQAAYRGYMARRSFRALK-GLVRLQGVVRGQNV-----KRQT 197
            + R   T   R  +A  IQ   R Y+ R+ ++ ++   + LQ ++RG  V         
Sbjct: 804 HQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR 863

Query: 198 TNAMKYMQLLVRVQSQIQS-----RRIQMLENQARR---QAQHKNDKEAESTLGKWTFGS 249
            +    +Q  VR            + I  L+   RR   + + K  K    ++ +     
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER----- 918

Query: 250 EAGNHEDWDASLLTKEEMEARMQRKVEAIIKRERAMA 286
               H   +  +    +++ ++  + +        M 
Sbjct: 919 YKKLHIGLENKI---MQLQRKIDEQNKEYKSLLEKMN 952

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 15/135 (11%), Positives = 42/135 (31%), Gaps = 2/135 (1%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQS 212
           +   +  TK     R     +     +  +  +         +   NA K  +   +   
Sbjct: 760 QRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK 819

Query: 213 QIQSRRIQMLEN--QARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKEEMEAR 270
             +   ++ + N  Q + +   +    A + L      S     E  +        +E +
Sbjct: 820 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 879

Query: 271 MQRKVEAIIKRERAM 285
            Q+K+  ++++   +
Sbjct: 880 RQKKIAVLLQKYNRI 894

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 155 RHASATKIQAAYRGYMARRSFRALK-GLVRLQGVVRGQNVKRQ 196
             A+  +IQ   RG++ R+ +  ++   + +Q  VRG   +  
Sbjct: 4   LRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCY 46

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 152 LRYRHASATKIQAAYRGYMARRSFRALK 179
           L  + A A  +Q   RGY AR   + L+
Sbjct: 25  LCMQRA-AITVQRYVRGYQARCYAKFLR 51

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRALK----GLVRLQGVVRGQNVKRQTTNAMKYMQLLV 208
                  +  QA  RGY+ R++++ L+    GL  +Q  +R   V R      ++ +L  
Sbjct: 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN----WQWWKLYS 831

Query: 209 RVQ 211
           +V+
Sbjct: 832 KVK 834

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 18/151 (11%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 152 LRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQ 211
            + +  S   IQ   R +M    +  +     +  +++    + +     + +Q     Q
Sbjct: 814 RQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQ 873

Query: 212 SQIQSRRIQMLE---------NQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLL 262
            + ++   ++ +         N  + + Q + +  AE+   +    ++    E+    + 
Sbjct: 874 QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 263 TKEEMEARMQRKVEAIIKRERAMAYAYSHQL 293
            + E E    ++++A  K+ +        QL
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 6/145 (4%)

Query: 156 HASATKIQAAYRGYMARRSFRALK----GLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQ 211
                  QA  RGY+AR++F   +     +  +Q  VR             +  +   ++
Sbjct: 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLK 851

Query: 212 SQIQSRRIQMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWDASLLTKE-EMEAR 270
              Q   +Q  + +  ++ + +  K            ++    ++     L  E E+ A 
Sbjct: 852 VTRQEEEMQAKDEE-LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 271 MQRKVEAIIKRERAMAYAYSHQLWK 295
            +     +  +++ +         +
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEAR 935

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.74
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.35
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.28
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.27
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.79
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.68
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.31
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.35
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.32
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.25
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	95.89
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	95.47
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	94.88
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	94.81
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.95
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	90.44
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	83.72

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.74  E-value=1.5e-08  Score=78.73  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=45.7

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 009330          154 YRHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLL  207 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~  207 (537)
                      ..+.|||.||+.||||++|+.|. ...++|.||+.+||+++|+.+ ..++...++
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCc
Confidence            46789999999999999999999 555999999999999999998 556665554

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.35  E-value=5.5e-07  Score=67.30  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHh---hHHHHHHHhhhhhhhhhh
Q 009330          157 ASATKIQAAYRGYMARRSFRALK---GLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lralk---glVrLQalvRG~~VRrQa  197 (537)
                      .|||.||+.+|||++|+.+..++   ..|.||+.+||+.+|+..
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            58999999999999999988433   778888888888888764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.28  E-value=9.1e-07  Score=103.16  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          155 RHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       155 ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      ++.||++||+.||||++|+.|. .+.++|.||+.+||..+|+++ ..++...+++.||+.+|++..|.
T Consensus       815 ~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ~~~Rg~l~R~  881 (1080)
T 2dfs_A          815 RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQKHVRGWLARV  881 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777788888888888777 566777788888888888777 44555667777777777777664

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.27  E-value=1.3e-06  Score=101.84  Aligned_cols=66  Identities=17%  Similarity=0.318  Sum_probs=60.2

Q ss_pred             hhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009330          156 HASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQML  222 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~s  222 (537)
                      ..||+.||++||||++|+.|+ ...+++.||+.+||+.+|+.+ ..++...|++.||+.+|++.+|..
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~  834 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKR  834 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHH
Confidence            579999999999999999999 667899999999999999998 667888999999999999998854

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.79  E-value=8.3e-06  Score=57.04  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             chhhHHHHHHHHHhhHHHHHHHH
Q 009330          154 YRHASATKIQAAYRGYMARRSFR  176 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylARR~lr  176 (537)
                      .||.||+.||.|||+||.|+.+.
T Consensus         4 ~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            4 SEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            68999999999999999998754

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.68  E-value=1.4e-05  Score=54.24  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             chhhHHHHHHHHHhhHHHHHH
Q 009330          154 YRHASATKIQAAYRGYMARRS  174 (537)
Q Consensus       154 ~ee~AAI~IQsAfRGylARR~  174 (537)
                      .||.||+.||.|||+||+++.
T Consensus         4 ~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            4 QEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999874

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00039  Score=51.64  Aligned_cols=43  Identities=14%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             HhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          178 LKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       178 lkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      .+.+|.||+.+||.++|+++ ..++...+++.||+.+|++.+|.
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence            35789999999999999999 56777789999999999998773

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.35  E-value=0.0048  Score=48.67  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHhhHHHHHHHHH----HhhHHHHHHHhhhhhhhhh
Q 009330          157 ASATKIQAAYRGYMARRSFRA----LKGLVRLQGVVRGQNVKRQ  196 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lra----lkglVrLQalvRG~~VRrQ  196 (537)
                      ..++.||+.+||||+|+.|..    ..++.-||.-+|+.+..+.
T Consensus         7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A            7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            457778888888888887762    2344344555555544443

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.32  E-value=0.003  Score=58.45  Aligned_cols=38  Identities=24%  Similarity=0.550  Sum_probs=33.1

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHH-HHhhHHHHHHHhhh
Q 009330          153 RYRHASATKIQAAYRGYMARRSFR-ALKGLVRLQGVVRG  190 (537)
Q Consensus       153 ~~ee~AAI~IQsAfRGylARR~lr-alkglVrLQalvRG  190 (537)
                      .++..|+|+||+++||||+|+.++ .+.|++++.+|..-
T Consensus        42 ~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~~   80 (148)
T 3gn4_A           42 KYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKR   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            367889999999999999999999 88999998877543

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.25  E-value=0.0046  Score=48.66  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHhhHHHHHHHHH----HhhHHHHHHHhhhhhhhh
Q 009330          157 ASATKIQAAYRGYMARRSFRA----LKGLVRLQGVVRGQNVKR  195 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lra----lkglVrLQalvRG~~VRr  195 (537)
                      ..++.||+.+|||++|+.|..    ..++.-||.-+|+.+.++
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456777777777777777652    233333444444444443

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=95.89  E-value=0.012  Score=45.26  Aligned_cols=40  Identities=15%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             hhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          179 KGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       179 kglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      ..+|.||+.+||+.+|+.+   ++...+++.||+.+|++.+|.
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~   45 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARC   45 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999   334479999999999998885

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=95.47  E-value=0.011  Score=67.56  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHH----hhHHHHHHHhhhhhhhhhh
Q 009330          156 HASATKIQAAYRGYMARRSFRAL----KGLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lral----kglVrLQalvRG~~VRrQa  197 (537)
                      ..+|+.||+++||||+|+.|+.+    .+++.||.-+||++++|+.
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            34688899999999999988743    5677777777777777665

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=94.88  E-value=0.043  Score=43.11  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=36.4

Q ss_pred             hhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          179 KGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ  220 (537)
Q Consensus       179 kglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R  220 (537)
                      .-++.||+.+||.++|+.+...+...+|+..||..+|++..+
T Consensus         7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l   48 (64)
T 1wdc_A            7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL   48 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            457889999999999999987777788888999999998654

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=94.81  E-value=0.041  Score=43.18  Aligned_cols=43  Identities=14%  Similarity=0.014  Sum_probs=36.6

Q ss_pred             hhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          179 KGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQM  221 (537)
Q Consensus       179 kglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R~  221 (537)
                      .-++.||+.+||.++|+.+...+...+|+..||..+|++..+.
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3477899999999999999877777888889999999986543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.95  E-value=0.078  Score=62.42  Aligned_cols=41  Identities=27%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHH----hhHHHHHHHhhhhhhhhhh
Q 009330          157 ASATKIQAAYRGYMARRSFRAL----KGLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       157 ~AAI~IQsAfRGylARR~lral----kglVrLQalvRG~~VRrQa  197 (537)
                      .+|+.||+.+|||++|+.|..+    .+++.||..+||++.++..
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6789999999999999998843    5899999999999988763

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=90.44  E-value=0.15  Score=48.07  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             cchhhHHHHHHHHHhhHHHHHHHH
Q 009330          153 RYRHASATKIQAAYRGYMARRSFR  176 (537)
Q Consensus       153 ~~ee~AAI~IQsAfRGylARR~lr  176 (537)
                      ..|+.||+.||.|||.|+.|+.+.
T Consensus       127 ~~e~~aA~~IQra~R~~~~r~~~~  150 (168)
T 4dck_A          127 KHEEVSAMVIQRAFRRHLLQRSLK  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Confidence            368999999999999999998776

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=83.72  E-value=1.6  Score=49.95  Aligned_cols=43  Identities=16%  Similarity=0.127  Sum_probs=35.8

Q ss_pred             HhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          178 LKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ  220 (537)
Q Consensus       178 lkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R  220 (537)
                      .+-++.||+.+||.+.|+.+...+....|++.||..+|++..|
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~  821 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL  821 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999965555568999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-06
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.002
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-06
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	8e-04
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	8e-04

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRALK----GLVRLQGVVRGQNVKRQTTNAMKYMQLLV 208
                  +  QA  RGY+ R++++ L+    GL  +Q  +R   V R      ++ +L  
Sbjct: 728 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN----WQWWKLYS 783

Query: 209 RV 210
           +V
Sbjct: 784 KV 785

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 152 LRYRHASATKIQAAYRGYMARRSFRALKGLVRL 184
           L+ +    + IQ   R ++  R+++  K   ++
Sbjct: 753 LQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKV 785

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRAL----KGLVRLQGVVRG-QNVKRQTTNAMKYMQLL 207
                  T  QA  RG++ R  +RA+    + +  +Q  VR   NVK        +M+L 
Sbjct: 732 DKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH-----WPWMKLF 786

Query: 208 VRVQSQIQ 215
            +++  ++
Sbjct: 787 FKIKPLLK 794

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 152 LRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVR 189
           +  R  S   IQ   R +M  + +  +K   +++ +++
Sbjct: 757 MVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 153 RYRHASATKIQAAYRGYMARRSFRALK 179
               A+  +IQ   RG++ R+ +  ++
Sbjct: 703 DKLRAACIRIQKTIRGWLMRKKYMRMR 729

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.15
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.14
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.34
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.45

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.15  E-value=0.0024  Score=69.74  Aligned_cols=42  Identities=26%  Similarity=0.282  Sum_probs=35.7

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHH----HhhHHHHHHHhhhhhhhhhh
Q 009330          156 HASATKIQAAYRGYMARRSFRA----LKGLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lra----lkglVrLQalvRG~~VRrQa  197 (537)
                      ..+||.||+.+|||++|+.|+.    ...++.||..+||+++||..
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4689999999999999998863    45788889999999888876

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.14  E-value=0.0028  Score=69.22  Aligned_cols=42  Identities=31%  Similarity=0.462  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHh----hHHHHHHHhhhhhhhhhh
Q 009330          156 HASATKIQAAYRGYMARRSFRALK----GLVRLQGVVRGQNVKRQT  197 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lralk----glVrLQalvRG~~VRrQa  197 (537)
                      ..+|+.||+.+|||++|+.|+.++    .++.||..+||+++||..
T Consensus       731 ~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            568999999999999999998554    577778888888888776

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.34  E-value=0.37  Score=52.09  Aligned_cols=44  Identities=11%  Similarity=0.039  Sum_probs=36.9

Q ss_pred             HHhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009330          177 ALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLVRVQSQIQSRRIQ  220 (537)
Q Consensus       177 alkglVrLQalvRG~~VRrQa~~tlr~mqa~vriQs~iR~rr~R  220 (537)
                      ..+.++.||+.+||.++|+.....++.-++++.||+.+|++..|
T Consensus       734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~  777 (794)
T d2mysa2         734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV  777 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567789999999999999966556668999999999999765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.45  E-value=0.25  Score=52.75  Aligned_cols=24  Identities=25%  Similarity=0.642  Sum_probs=19.7

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHh
Q 009330          156 HASATKIQAAYRGYMARRSFRALK  179 (537)
Q Consensus       156 e~AAI~IQsAfRGylARR~lralk  179 (537)
                      ..+||+||+.+|||++||.|..+|
T Consensus       706 ~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         706 RAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            458999999999999999887443