Citrus Sinensis ID: 009362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S735 | 532 | Probable inorganic phosph | yes | no | 0.917 | 0.924 | 0.630 | 0.0 | |
| Q9SYQ1 | 534 | Probable inorganic phosph | no | no | 0.929 | 0.932 | 0.628 | 1e-180 | |
| Q69T94 | 552 | Probable inorganic phosph | yes | no | 0.923 | 0.896 | 0.597 | 1e-169 | |
| Q8H6G7 | 582 | Probable inorganic phosph | yes | no | 0.923 | 0.850 | 0.558 | 1e-161 | |
| Q01MW8 | 538 | Probable inorganic phosph | N/A | no | 0.930 | 0.927 | 0.544 | 1e-148 | |
| Q8H6H2 | 538 | Probable inorganic phosph | yes | no | 0.930 | 0.927 | 0.544 | 1e-148 | |
| Q8H074 | 541 | Probable inorganic phosph | no | no | 0.938 | 0.929 | 0.525 | 1e-144 | |
| Q8H6G8 | 541 | Probable inorganic phosph | no | no | 0.938 | 0.929 | 0.542 | 1e-144 | |
| Q8GSD9 | 528 | Inorganic phosphate trans | no | no | 0.934 | 0.948 | 0.528 | 1e-143 | |
| Q7XDZ7 | 526 | Probable inorganic phosph | no | no | 0.934 | 0.952 | 0.520 | 1e-142 |
| >sp|Q9S735|PHT19_ARATH Probable inorganic phosphate transporter 1-9 OS=Arabidopsis thaliana GN=PHT1-9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/517 (63%), Positives = 393/517 (76%), Gaps = 25/517 (4%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPN 62
L +LSALD+A+ Q+YHFKAII+AGMGLFTDAYDLFCI PIMK++ +IYY + I
Sbjct: 4 LSLLSALDAARIQWYHFKAIIVAGMGLFTDAYDLFCIAPIMKMISQIYYHKDS----IGT 59
Query: 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ-CV 121
A++S A+ALLGT +GQL+FG LGD +GRR+VYGL+L++MV SS CGFS+CTT++ CV
Sbjct: 60 ALLSTSYAIALLGTALGQLIFGYLGDRVGRRKVYGLSLLIMVFSSFGCGFSVCTTRRSCV 119
Query: 122 LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181
+ SLGFFRF+LG+GIGGDYPLSATIMSEFANK TRGAFIAAVFSMQG GIL SS VTM V
Sbjct: 120 MVSLGFFRFVLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILMSSAVTMVV 179
Query: 182 CKIF----EATTTRDNDVNKRQ---HQADIAWRLILMLGSIPAAFTYYWRMTMPESARYT 234
C F E ++ + N ++DIAWRLILM+G++PAA T+YWRM MPE+ARYT
Sbjct: 180 CLAFKNAGEGSSEKTNVAGLETLAPPESDIAWRLILMIGALPAALTFYWRMLMPETARYT 239
Query: 235 ALVEQNVMQAAKDMEKVLDVS-ISQIAE----EYPLPPSPPQYPLISKRFLRRHGRDLFA 289
ALVE NV+QAAKDM++V+ VS ISQI E E PPS Y L S+RFL HGRDLFA
Sbjct: 240 ALVENNVVQAAKDMQRVMSVSMISQITEDSSSELEQPPSSSSYKLFSRRFLSLHGRDLFA 299
Query: 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPG 349
+ +W LVD+VFY+SNL S+I++ N + + ++ AF+VA+ AI A CSTIPG
Sbjct: 300 ASANWFLVDVVFYTSNLLLSQIFNF---SNKPLNSTNVYDSAFEVAKLAAIVAACSTIPG 356
Query: 350 YFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKH--TNFGFMFLYALTFFFA 407
Y+ TV+FID+IGRV IQ +GFF M V+YL G+PYS+ WSKH TN GFM LY L FFF+
Sbjct: 357 YWFTVYFIDKIGRVKIQMMGFFLMAVVYLVAGIPYSWYWSKHEKTNKGFMVLYGLIFFFS 416
Query: 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS---HDDNKVNATG 464
NFGPNTTTFI+PAELFPARFRSTCHGISGA GK GAI+GTV FLWA+ +D +
Sbjct: 417 NFGPNTTTFIIPAELFPARFRSTCHGISGAAGKFGAIVGTVGFLWATRHHEEDGFPDVKR 476
Query: 465 VTIALLILGGVCFMGFAITYFFTRETMGRSLEENEKE 501
V IA LILGGVC G +TY FTRETMGRSLEENE E
Sbjct: 477 VRIAFLILGGVCIAGMIVTYLFTRETMGRSLEENEDE 513
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High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYQ1|PHT18_ARATH Probable inorganic phosphate transporter 1-8 OS=Arabidopsis thaliana GN=PHT1-8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 631 bits (1627), Expect = e-180, Method: Compositional matrix adjust.
Identities = 327/520 (62%), Positives = 391/520 (75%), Gaps = 22/520 (4%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
M +KVLS+LD A+TQ+YHFKAII+AGMGLFTDAYDLFCI P+MK++ +YY+ + I
Sbjct: 1 MPIKVLSSLDVARTQWYHFKAIIVAGMGLFTDAYDLFCIAPVMKMISHVYYNGDS----I 56
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ- 119
AV+S A+ALLGT GQLVFG LGD +GRRRVYGL L++M+LSS CGFS+CTT++
Sbjct: 57 NTAVLSTSYAIALLGTATGQLVFGYLGDRVGRRRVYGLCLIIMILSSFGCGFSVCTTRRS 116
Query: 120 CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTM 179
CV+ SLGFFRF LG+GIGGDYPLSATIMSEFANK TRGAFIAAVFSMQG GIL SS VTM
Sbjct: 117 CVMVSLGFFRFFLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILVSSAVTM 176
Query: 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQ 239
AVC F+ + +AD+AWRLILM+G++PAA T+YWRM MPE+ARYTALVE
Sbjct: 177 AVCVAFKRSGGGLEVDAAAPTEADLAWRLILMIGALPAALTFYWRMLMPETARYTALVEN 236
Query: 240 NVMQAAKDMEKVLDVSISQIAEE----YPLPPSPPQYPLISKRFLRRHGRDLFACATSWL 295
N++QAAKDM++V+ S S I++E P PP PP Y L S+ F R HGRDLFA + +W
Sbjct: 237 NIVQAAKDMQRVM--SRSHISDEATTDPPPPPPPPSYKLFSRCFFRLHGRDLFAASFNWF 294
Query: 296 LVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVF 355
LVDIVFY+SNL S I+ Y + ++ AF+VA AI A CSTIPGY+ TV+
Sbjct: 295 LVDIVFYTSNLLLSHIFSHY--SKKPSTAENVYDAAFEVAELGAIIAACSTIPGYWFTVY 352
Query: 356 FIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK--HTNFGFMFLYALTFFFANFGPNT 413
FID+IGRV IQ +GFFFM VIYL G+PYS+ WSK H N GFM LY L FFF NFGPNT
Sbjct: 353 FIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKHEHNNKGFMVLYGLVFFFCNFGPNT 412
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA-----SHDDNKV--NATGVT 466
TTFI+PAE FPARFRSTCHGISGA GK+GAI+GTV FLWA S D N++ +
Sbjct: 413 TTFIIPAEHFPARFRSTCHGISGAAGKLGAIVGTVGFLWATKKMESDDKNQIYPEVNRMR 472
Query: 467 IALLILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSDA 506
IA LILGGVC G +TYFFT+ETMGRSLEENE + D++A
Sbjct: 473 IAFLILGGVCIAGILVTYFFTKETMGRSLEENEHDQDNNA 512
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High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q69T94|PT110_ORYSJ Probable inorganic phosphate transporter 1-10 OS=Oryza sativa subsp. japonica GN=PHT1-10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust.
Identities = 307/514 (59%), Positives = 381/514 (74%), Gaps = 19/514 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI-P 61
+ VL+ALD A+TQYYHFKAI+IAGMGLFTD+YDLFCI P+MK++GR+YYSDG R + P
Sbjct: 4 IGVLTALDQARTQYYHFKAIVIAGMGLFTDSYDLFCIAPVMKIVGRVYYSDGGARPGVTP 63
Query: 62 NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCV 121
AVVS + +ALLG VIG +VFG LGD +GRRRVYG L+LMV SS+ GFS+C T++C
Sbjct: 64 PAVVSATVGVALLGAVIGNVVFGALGDRVGRRRVYGACLLLMVCSSVGSGFSVCRTRRCA 123
Query: 122 LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181
L SL FFRFLLGVG+GGDYPLSATIMSEFAN+ TRGAFIAAVFSMQGFGILASS VTMAV
Sbjct: 124 LASLCFFRFLLGVGVGGDYPLSATIMSEFANRRTRGAFIAAVFSMQGFGILASSAVTMAV 183
Query: 182 CKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNV 241
F+ T ++ + AD+AWR+ILM G++PAA TYYWRM+MPE+ARYTALVE++V
Sbjct: 184 AAAFDHYTGYPAPLDTPEC-ADLAWRIILMAGAVPAALTYYWRMSMPETARYTALVERDV 242
Query: 242 MQAAKDMEKVL-DVSISQIAE-------EYPLPPSPPQYPLISKRFLRRHGRDLFACATS 293
++A D+ +VL D+ + +AE P PP P Y L+S+RF+R+HGRDLFACA +
Sbjct: 243 VKATNDIGRVLADLDLGAVAEEEVAAALSRPPPPPRPSYGLLSRRFVRQHGRDLFACAAA 302
Query: 294 WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVT 353
W L+DI +YSS LFQS+IY G +AF+EAF VA+ QA+ A+ STIPGYFV
Sbjct: 303 WFLLDIPYYSSTLFQSQIYRPLFPAPG---LINAFQEAFNVAKFQAVIAVASTIPGYFVA 359
Query: 354 VFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKH-TNFGFMFLYALTFFFANFGPN 412
V IDR+GR +Q GF M V A+ PY W H + G++ LY+LTFF AN GPN
Sbjct: 360 VLLIDRVGRRCLQMAGFLLMAVFLFALAGPYDGYWRDHGAHAGYIVLYSLTFFSANLGPN 419
Query: 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA-----TGVTI 467
TTTFI+PAELFPARFRSTCHG+SGA GK+GA++G++ FLWAS + A G+
Sbjct: 420 TTTFILPAELFPARFRSTCHGLSGAAGKLGALVGSIGFLWASQQKDGAAAGHLPGIGMMY 479
Query: 468 ALLILGGVCFMGFAITYFFTRETMGRSLEENEKE 501
AL +LGG+C +G A+TY FT ETM RSLEENE +
Sbjct: 480 ALFVLGGICLLGLALTYVFTPETMMRSLEENESD 513
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High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6G7|PHT19_ORYSJ Probable inorganic phosphate transporter 1-9 OS=Oryza sativa subsp. japonica GN=PHT1-9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 293/525 (55%), Positives = 366/525 (69%), Gaps = 30/525 (5%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQ--- 59
++VL+ALD A+TQYYHFKAI+IAGMGLFTD+YDLFCI P+MK+ GR+YY+
Sbjct: 5 IRVLAALDQARTQYYHFKAIVIAGMGLFTDSYDLFCISPVMKIFGRVYYAPSGSVDGSGS 64
Query: 60 ----IPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSIC 115
P AVVS + +ALLG V G +VFG LGD +GRRRVYG L+LMV SS+ G S+C
Sbjct: 65 GPGVTPPAVVSATVGVALLGAVAGNVVFGALGDRVGRRRVYGACLLLMVCSSVGSGLSVC 124
Query: 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175
T++C L SL FFRFLLGVG+GGDYPLSATIMSEFAN+ TRGAFIAAVFSMQGFGIL SS
Sbjct: 125 RTRRCALASLCFFRFLLGVGVGGDYPLSATIMSEFANRRTRGAFIAAVFSMQGFGILVSS 184
Query: 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA 235
VTMAV F+ T ++ + AD+AWR+ILM G++PAA TYYWRM+MPE+ARYTA
Sbjct: 185 AVTMAVAAAFDHYTGYPAPLDTPE-CADLAWRIILMAGAVPAALTYYWRMSMPETARYTA 243
Query: 236 LVEQNVMQAAKDMEKVL-DVSIS------------QIAEEYPLPPSPPQYPLISKRFLRR 282
LVE++V++A D+ +VL D+ ++ PP P Y L S+RF+R+
Sbjct: 244 LVERDVVKATNDIGRVLADLDLAAVAEEEVAAAALSPPPVTTPPPPRPSYGLFSRRFVRQ 303
Query: 283 HGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFA 342
HGRDLFACA +W L+DI +YSS LFQS+IY + +AF+EAF VA+ QA+ A
Sbjct: 304 HGRDLFACAAAWFLLDIPYYSSTLFQSQIYRPWFPPAAK---VNAFQEAFNVAKFQAVIA 360
Query: 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNF-GFMFLYA 401
+ STIPGYF + I+R GR +Q GF M V A+ PY W H G++ LY+
Sbjct: 361 VASTIPGYFAAMLLIERAGRRRLQMAGFLLMAVFLFALAGPYDGYWRDHAKTAGYIVLYS 420
Query: 402 LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVN 461
LTFF AN GPNTTTFI+PAELFPARFRSTCHG+SGA GK+GA++G++ FLWAS +
Sbjct: 421 LTFFSANLGPNTTTFILPAELFPARFRSTCHGLSGAAGKLGALVGSIGFLWASQQKDGAA 480
Query: 462 A-----TGVTIALLILGGVCFMGFAITYFFTRETMGRSLEENEKE 501
A G+ AL +LGG+C +G A+TY FT ETM RSLEENE
Sbjct: 481 AGHLPGIGMMYALFVLGGICLLGLALTYAFTPETMTRSLEENESS 525
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q01MW8|PHT14_ORYSI Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/520 (54%), Positives = 347/520 (66%), Gaps = 21/520 (4%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRF--QI 60
LKVL+ALDSAKTQ+YHF AI+IAGMG FTDAYDLF I + KLLGRIYY + A + +
Sbjct: 5 LKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPASKSPGSL 64
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V + + +A GT+ GQL FG LGD +GR++VYG+ LMLMV+ LA G S ++ +
Sbjct: 65 PPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSSAKG 124
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+ANK TRGAFIAAVF+MQGFG L V +
Sbjct: 125 VMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAII 184
Query: 181 VCKIF----EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V F +A RD+ QAD AWR++LM G+IPA TYYWRM MPE+ARYTAL
Sbjct: 185 VSAAFKARFDAPAYRDDRAGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTAL 244
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLL 296
V +N QAA DM +VL+V I + E+ Q+ L S++FLRRHGR L W +
Sbjct: 245 VAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWFV 304
Query: 297 VDIVFYSSNLFQSKIYH--QYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
+DI FYSSNLFQ IY Q++ T SA EE FK++R Q + A+C TIPGY+ TV
Sbjct: 305 LDIAFYSSNLFQKDIYTAVQWLP---KADTMSALEEMFKISRAQTLVALCGTIPGYWFTV 361
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
FFID IGR IQ GFFFM L + VPY + + + GF+ +YA TFFFANFGPN+T
Sbjct: 362 FFIDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNST 421
Query: 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA--SHDDNKVNA-----TGVTI 467
TFIVPAE+FPAR RSTCHGIS A GK GAI+G+ FL+A S D +K +A GV
Sbjct: 422 TFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRN 481
Query: 468 ALLILGGVCFMGFAITYFFTRETMGRSLEE--NEKEDDSD 505
+L L G +GF T F E+ G+SLEE E EDD D
Sbjct: 482 SLFFLAGCNVIGFFFT-FLVPESKGKSLEELSGENEDDDD 520
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8H6H2|PHT14_ORYSJ Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/520 (54%), Positives = 347/520 (66%), Gaps = 21/520 (4%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRF--QI 60
LKVL+ALDSAKTQ+YHF AI+IAGMG FTDAYDLF I + KLLGRIYY + A + +
Sbjct: 5 LKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPASKSPGSL 64
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V + + +A GT+ GQL FG LGD +GR++VYG+ LMLMV+ LA G S ++ +
Sbjct: 65 PPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSSAKG 124
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+ANK TRGAFIAAVF+MQGFG L V +
Sbjct: 125 VMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAII 184
Query: 181 VCKIF----EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V F +A RD+ QAD AWR++LM G+IPA TYYWRM MPE+ARYTAL
Sbjct: 185 VSAAFKSRFDAPAYRDDRTGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTAL 244
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLL 296
V +N QAA DM +VL+V I + E+ Q+ L S++FLRRHGR L W +
Sbjct: 245 VAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWFV 304
Query: 297 VDIVFYSSNLFQSKIYH--QYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
+DI FYSSNLFQ IY Q++ T SA EE FK++R Q + A+C TIPGY+ TV
Sbjct: 305 LDIAFYSSNLFQKDIYTAVQWLP---KADTMSALEEMFKISRAQTLVALCGTIPGYWFTV 361
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
FFID IGR IQ GFFFM L + VPY + + + GF+ +YA TFFFANFGPN+T
Sbjct: 362 FFIDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNST 421
Query: 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA--SHDDNKVNA-----TGVTI 467
TFIVPAE+FPAR RSTCHGIS A GK GAI+G+ FL+A S D +K +A GV
Sbjct: 422 TFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRN 481
Query: 468 ALLILGGVCFMGFAITYFFTRETMGRSLEE--NEKEDDSD 505
+L L G +GF T F E+ G+SLEE E EDD D
Sbjct: 482 SLFFLAGCNVIGFFFT-FLVPESKGKSLEELSGENEDDDD 520
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H074|PT112_ORYSJ Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 272/518 (52%), Positives = 335/518 (64%), Gaps = 15/518 (2%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRF--QI 60
L+VL+ALD+AKTQ+YHF AII+AGMG FTDAYDLFCI + KLLGRIYY+D A +
Sbjct: 8 LQVLNALDAAKTQWYHFTAIIVAGMGFFTDAYDLFCISLVTKLLGRIYYTDPASPTPGSL 67
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P + + + +AL GT+ GQL FG LGD +GR+ VYG+ L+LMV+ S+A G S T
Sbjct: 68 PPNIAAAVNGVALCGTLSGQLFFGWLGDKLGRKSVYGMTLLLMVICSIASGLSFSHTPTS 127
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+ANK TRGAFIAAVF+MQGFGILA VT+A
Sbjct: 128 VMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVVTLA 187
Query: 181 VCKIFEAT----TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
+ F+A N QAD WR+ILMLG++PA TYYWRM MPE+ARYTAL
Sbjct: 188 MSAGFQAAFPAPAYEVNAAASTVPQADYVWRIILMLGALPAILTYYWRMKMPETARYTAL 247
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLL 296
V ++ QA+ DM KVL V I E+ Y L S RF +RHG L A +W L
Sbjct: 248 VAKDAKQASSDMAKVLQVEIEVEEEKLQDITRGRDYGLFSARFAKRHGAHLLGTAATWFL 307
Query: 297 VDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356
VD+ +YS NLFQ I+ I +T S EE F+++R Q + A+C T+PGY+ TVF
Sbjct: 308 VDVAYYSQNLFQKDIFTS-IHWIPKARTMSELEEVFRISRAQTLIALCGTVPGYWFTVFL 366
Query: 357 IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416
ID IGR IQ LGF M L + +PY + F+FLY TFFFANFGPN TTF
Sbjct: 367 IDIIGRFKIQLLGFAGMTAFMLGLAIPYHHWTMPGNQVIFVFLYGFTFFFANFGPNATTF 426
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVN-------ATGVTIAL 469
IVPAE+FPAR RSTCHGIS A GK GAIIG FL+A+ +K + GV AL
Sbjct: 427 IVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQPQDKAHVDAGYKPGIGVRNAL 486
Query: 470 LILGGVCFMGFAITYFFTRETMGRSLEENEKE-DDSDA 506
+L G +GF +T+ E+ G+SLEE E DD +A
Sbjct: 487 FVLAGCNLVGFLMTWMLVPESKGKSLEEMSGEADDEEA 524
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6G8|PHT18_ORYSJ Probable inorganic phosphate transporter 1-8 OS=Oryza sativa subsp. japonica GN=PHT1-8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 282/520 (54%), Positives = 352/520 (67%), Gaps = 17/520 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRF--QI 60
L+VLSALD+AKTQ+YHF AI++AGMG FTDAYDLFCI + KLLGRIYY+D A +
Sbjct: 10 LQVLSALDAAKTQWYHFTAIVVAGMGFFTDAYDLFCISLVTKLLGRIYYTDLAKENPGSL 69
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V + + +A GT+ GQL FG LGD +GR+ VYG+ L++MV+ S+A G S T
Sbjct: 70 PPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKSVYGMTLLMMVICSIASGLSFSHTPTS 129
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+ANK TRGAFIAAVF+MQGFGILA VT+
Sbjct: 130 VMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVTLI 189
Query: 181 VCKIFEA----TTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
+ F A +D+ QAD WR+ILMLG++PA TYYWRM MPE+ARYTAL
Sbjct: 190 ISSAFRAGFPAPAYQDDRAGSTVRQADYVWRIILMLGAMPALLTYYWRMKMPETARYTAL 249
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAE--EYPLPPSPPQYPLISKRFLRRHGRDLFACATSW 294
V +N QAA DM KVL V I + + E + + + L S++F RRHG L AT+W
Sbjct: 250 VAKNAKQAAADMSKVLQVEIQEEQDKLEQMVTRNSSSFGLFSRQFARRHGLHLVGTATTW 309
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FYS NLFQ I+ I+ +T SA EE F++AR Q + A+C T+PGY+ TV
Sbjct: 310 FLLDIAFYSQNLFQKDIFTS-INWIPKAKTMSALEEVFRIARAQTLIALCGTVPGYWFTV 368
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
F ID +GR AIQ LGFF M V L + VPY + +K + GF+ +YA TFFFANFGPN+T
Sbjct: 369 FLIDIVGRFAIQLLGFFMMTVFMLGLAVPYHHWTTKGNHIGFVVMYAFTFFFANFGPNST 428
Query: 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA-----TGVTIAL 469
TFIVPAE+FPAR RSTCHGIS A GK GAIIG+ FL+A+ D +K +A GV +L
Sbjct: 429 TFIVPAEIFPARLRSTCHGISAAAGKAGAIIGSFGFLYAAQDPHKPDAGYKPGIGVRNSL 488
Query: 470 LILGGVCFMGFAITYFFTRETMGRSLEE--NEKEDDSDAL 507
+L G +GF T F E+ G+SLEE E EDD D +
Sbjct: 489 FVLAGCNLLGFICT-FLVPESKGKSLEEMSGEAEDDDDEV 527
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GSD9|PHT12_ORYSJ Inorganic phosphate transporter 1-2 OS=Oryza sativa subsp. japonica GN=PTH1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/515 (52%), Positives = 340/515 (66%), Gaps = 14/515 (2%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSD--GADRFQI 60
L VL LD AKTQ+YHF AI+IAGMG FTDAYDLFCI + KLLGR+YY+D + +
Sbjct: 6 LNVLVKLDQAKTQWYHFMAIVIAGMGFFTDAYDLFCIALVTKLLGRLYYTDITKPNPGTL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V S + +AL GT+ GQL FG LGD +GR+ VYG L+LMV+ S+A G S T +
Sbjct: 66 PPNVSSAVTGVALCGTLAGQLFFGWLGDKLGRKSVYGFTLILMVVCSIASGLSFGHTPKS 125
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+A+K TRGAFIAAVF+MQGFGIL + V +
Sbjct: 126 VIATLCFFRFWLGFGIGGDYPLSATIMSEYASKKTRGAFIAAVFAMQGFGILFGAIVALV 185
Query: 181 VCKIFE----ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V F A + N QAD WRLILM G+IPA TYYWRM MPE+ARYTAL
Sbjct: 186 VSAGFRHAYPAPSYAQNPAASLAPQADYTWRLILMFGTIPAGLTYYWRMKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQ-YPLISKRFLRRHGRDLFACATSWL 295
V +N QAA DM KVL I + E + + L S++F++RHG L A ++W
Sbjct: 246 VARNAKQAAADMSKVLHAEIEERPEVVESQVVAGETWGLFSRQFMKRHGMHLLATTSTWF 305
Query: 296 LVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVF 355
L+DI FYS NLFQ I+ + + +T +A EE ++++R QA+ A+C TIPGY+ TV
Sbjct: 306 LLDIAFYSQNLFQKDIFSK-VGWIPPAKTMNALEELYRISRAQALIALCGTIPGYWFTVA 364
Query: 356 FIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415
FID +GR IQ +GFF M V LA+GVPY + + GF+ LYALTFFFANFGPN+TT
Sbjct: 365 FIDIVGRFWIQIMGFFMMTVFMLALGVPYDHWTHPAHHTGFVVLYALTFFFANFGPNSTT 424
Query: 416 FIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA-----TGVTIALL 470
FIVPAE+FPAR RSTCHGIS A GK GAIIG FL+A+ D + +A G+ AL
Sbjct: 425 FIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQDQHNPDAGYSRGIGIRNALF 484
Query: 471 ILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSD 505
+L G F+G +T E+ G SLEE K++ D
Sbjct: 485 VLAGTNFLGMLMT-LLVPESKGLSLEEMSKDNVVD 518
|
Low-affinity transporter for inorganic phosphate (Pi). Probably involved in internal Pi transport from root to shoot. Acts as a H(+):phosphate symporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7XDZ7|PHT13_ORYSJ Probable inorganic phosphate transporter 1-3 OS=Oryza sativa subsp. japonica GN=PHT1-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/517 (52%), Positives = 342/517 (66%), Gaps = 16/517 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSD--GADRFQI 60
LKVL+ LD A+TQ+YHF AI+IAGMG FTDAYDLFCI + KLLGRIYY+D G + +
Sbjct: 6 LKVLTTLDHARTQWYHFMAIVIAGMGFFTDAYDLFCISLVSKLLGRIYYTDLAGDNPGSL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V + + +AL GT+ GQL FG LGD +GR+ VYG L+LMV+ S+A G S T +
Sbjct: 66 PPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKSVYGFTLVLMVVCSVASGLSFGRTAKG 125
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V+ +L FFRF LG GIGGDYPLSATIMSE+ANK TRGAFIAAVF+MQGFGIL + V +
Sbjct: 126 VVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILFGAIVALV 185
Query: 181 VCKIFE----ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V F A + D +AD WR+ILM G++PAA TYYWRM MPE+ARYTAL
Sbjct: 186 VSAGFRNAYPAPSYADGRAASLVPEADYVWRIILMFGTVPAALTYYWRMKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP---QYPLISKRFLRRHGRDLFACATS 293
+ +N QAA DM KVLD I + A+ + ++ L S++F+RRHG L A ++
Sbjct: 246 IARNAKQAAADMSKVLDTEIQEDADRAEAVAAGGAGNEWGLFSRQFVRRHGVHLVATTST 305
Query: 294 WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVT 353
W L+DI FYS NLFQ I+ + + +T +A EE F++AR QA+ A+C TIPGY+ T
Sbjct: 306 WFLLDIAFYSQNLFQKDIFSK-VGWIPPARTMNAVEEVFRIARAQALIALCGTIPGYWFT 364
Query: 354 VFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413
V FID GR AIQ +GF M V L + PY + + + GF+ +Y TFFFANFGPN
Sbjct: 365 VAFIDVAGRFAIQLMGFAMMTVFMLGLAAPYHHWTTPGNHTGFVVMYGFTFFFANFGPNA 424
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA-----TGVTIA 468
TTFIVPAE++PAR RSTCHGIS A GK GAI+G FL+A+ D +K A G+ A
Sbjct: 425 TTFIVPAEIYPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQDPHKPEAGYKPGIGIRNA 484
Query: 469 LLILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSD 505
L +L G F+G +T E+ G SLEE KE+ +D
Sbjct: 485 LFVLAGTNFLGMLMT-LLVPESKGMSLEEVSKENVAD 520
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | ||||||
| 425872918 | 540 | phosphate transporter [Citrus trifoliata | 1.0 | 0.992 | 0.968 | 0.0 | |
| 225457638 | 540 | PREDICTED: probable inorganic phosphate | 0.979 | 0.972 | 0.699 | 0.0 | |
| 449455730 | 544 | PREDICTED: probable inorganic phosphate | 0.938 | 0.924 | 0.693 | 0.0 | |
| 255539312 | 528 | inorganic phosphate transporter, putativ | 0.970 | 0.984 | 0.674 | 0.0 | |
| 224086102 | 502 | high affinity inorganic phosphate transp | 0.910 | 0.972 | 0.699 | 0.0 | |
| 357475179 | 518 | hypothetical protein MTR_4g083960 [Medic | 0.934 | 0.967 | 0.684 | 0.0 | |
| 359807139 | 514 | probable inorganic phosphate transporter | 0.916 | 0.955 | 0.690 | 0.0 | |
| 224061843 | 528 | high affinity inorganic phosphate transp | 0.964 | 0.979 | 0.659 | 0.0 | |
| 227121296 | 506 | phosphate transporter 12 [Glycine max] | 0.899 | 0.952 | 0.690 | 0.0 | |
| 359806882 | 511 | probable inorganic phosphate transporter | 0.912 | 0.956 | 0.687 | 0.0 |
| >gi|425872918|gb|AFY06663.1| phosphate transporter [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/540 (96%), Positives = 527/540 (97%), Gaps = 4/540 (0%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI
Sbjct: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC
Sbjct: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA
Sbjct: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN
Sbjct: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
Query: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV 300
VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV
Sbjct: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV 300
Query: 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI 360
FYSSNLFQSKIYHQYIDGNGHDQT +AFEEAFKV RHQAI AICSTI GYFVTVFFIDRI
Sbjct: 301 FYSSNLFQSKIYHQYIDGNGHDQTMNAFEEAFKVTRHQAILAICSTISGYFVTVFFIDRI 360
Query: 361 GRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420
GRVAIQALGFFFMGVIYLAIGVPYS+KWS+ NFGFMFLYALTFFFANFGPNTTTFIVPA
Sbjct: 361 GRVAIQALGFFFMGVIYLAIGVPYSHKWSEQHNFGFMFLYALTFFFANFGPNTTTFIVPA 420
Query: 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK----VNATGVTIALLILGGVC 476
ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS +DNK VN TGVT ALLILGGVC
Sbjct: 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASQEDNKNDKGVNETGVTTALLILGGVC 480
Query: 477 FMGFAITYFFTRETMGRSLEENEKEDDSDALCFLRCLTKSSLRTNSPRNNNEVAVNADAP 536
FMGFAITYFFTRETMGRSLEENEKEDDSDALCFLRCLTKSSLRTNSPRNNNEVAVNADAP
Sbjct: 481 FMGFAITYFFTRETMGRSLEENEKEDDSDALCFLRCLTKSSLRTNSPRNNNEVAVNADAP 540
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457638|ref|XP_002274930.1| PREDICTED: probable inorganic phosphate transporter 1-9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/545 (69%), Positives = 437/545 (80%), Gaps = 20/545 (3%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGAD---R 57
MALKVLSALD+AKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKL+GRIYY D + +
Sbjct: 1 MALKVLSALDTAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLIGRIYYEDEPNLEKQ 60
Query: 58 FQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTT 117
++ P VVS ++ LALLGTVIGQLVFGRLGD IGRRRVYGL+LMLMVLSS+ CGFSIC T
Sbjct: 61 YETPAFVVSLLVGLALLGTVIGQLVFGRLGDQIGRRRVYGLSLMLMVLSSIGCGFSICRT 120
Query: 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177
+ CVLG+LGFFRF+LG+GIGGDYPLSATIMSEFANK TRG+FIAAVFSMQGFGIL SSTV
Sbjct: 121 RNCVLGTLGFFRFMLGIGIGGDYPLSATIMSEFANKKTRGSFIAAVFSMQGFGILVSSTV 180
Query: 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALV 237
TM VC IF A + + N +AD+ WRLILM G+IPAA TYYWRM MPE+ARYTALV
Sbjct: 181 TMVVCSIFNAAS--NAQYNHTPEEADLVWRLILMFGAIPAAMTYYWRMMMPETARYTALV 238
Query: 238 EQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLV 297
EQNV+QAAKDMEKVLDVS+SQIAEEY +PP+PP YPL SK F RRHGRDLF+CAT+W LV
Sbjct: 239 EQNVLQAAKDMEKVLDVSMSQIAEEYEIPPNPPSYPLFSKEFFRRHGRDLFSCATTWFLV 298
Query: 298 DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFI 357
D+VFYSSNLFQS+IY++Y+ + +A+ EAF+VAR QA+ A+CSTIPGY+ TV I
Sbjct: 299 DVVFYSSNLFQSQIYNEYLS---KKEDMNAYTEAFEVARVQALIAVCSTIPGYWATVSCI 355
Query: 358 DRIGRVAIQALGFFFMGVIYLAIGVPYSYKW-----SKHTNFGFMFLYALTFFFANFGPN 412
DRIGRV IQ +GF FMG+ LAIG+PY W ++ FGFM LY LTFFFANFGPN
Sbjct: 356 DRIGRVKIQMMGFLFMGLGLLAIGIPYYSTWDEGMENEGKKFGFMLLYGLTFFFANFGPN 415
Query: 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV---NATGVTIAL 469
TTTFIVPAELFPARFRSTCHGISGA GKVGAIIG+V FLWASH+ + A G+ +L
Sbjct: 416 TTTFIVPAELFPARFRSTCHGISGAAGKVGAIIGSVGFLWASHNKKEKGYPKAIGMRYSL 475
Query: 470 LILGGVCFMGFAITYFFTRETMGRSL----EENEKEDDSDALCFLRCLTKSSLRTNSPRN 525
+IL GVCFMG +TYFFTRET GRSL ENE ED S+ LRC T S++++S N
Sbjct: 476 VILAGVCFMGVVVTYFFTRETKGRSLEENEIENENEDGSNDHVLLRCFTNCSVQSHSSIN 535
Query: 526 NNEVA 530
A
Sbjct: 536 EGAAA 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455730|ref|XP_004145604.1| PREDICTED: probable inorganic phosphate transporter 1-9-like [Cucumis sativus] gi|449522966|ref|XP_004168496.1| PREDICTED: probable inorganic phosphate transporter 1-9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/515 (69%), Positives = 412/515 (80%), Gaps = 12/515 (2%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
M LKVLSALD+AKTQ YHFKAI+IAGMGLFTDAYDLF I PIM +LGR+YY D +++I
Sbjct: 1 MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSISPIMTILGRVYYQD--KQYEI 58
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P V S MLA+ALLGT +GQLVFG LGD +GRRRVYGLAL LMV SS+ CGFSICTT+ C
Sbjct: 59 PATVKSAMLAVALLGTAMGQLVFGILGDRVGRRRVYGLALALMVASSIGCGFSICTTRSC 118
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VL SLGFFRFLLG+GIGGDYPLSATIMSEFANK TRGAFIAAVFSMQGFGILAS+TVTM
Sbjct: 119 VLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASATVTMI 178
Query: 181 VCKIFEATTTRDNDVNKRQHQ-ADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQ 239
VC IF+ + + KR ADIAWRLILMLG++PAA TYYWRM MPE+ARYTALVE+
Sbjct: 179 VCSIFDRAS--NYPTGKRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVER 236
Query: 240 NVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDI 299
NV QAAKDMEKVLDVS++ I E+ P+ PSPP + S +FLRRHGRDLF+CA SW LVD+
Sbjct: 237 NVAQAAKDMEKVLDVSLADITEDSPMSPSPPNFHFFSNQFLRRHGRDLFSCAASWFLVDV 296
Query: 300 VFYSSNLFQSKIYHQYIDGNGHDQ--TRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFI 357
VFYSSNLFQSKIY Q++ HDQ T + + +A AR QAI A+CSTIPGY+++VFFI
Sbjct: 297 VFYSSNLFQSKIYTQFLP---HDQNSTNNVYHQALNEARLQAIVAVCSTIPGYWISVFFI 353
Query: 358 DRIGRVAIQALGFFFMGVIYLAIGVPYSYKW-SKHTNFGFMFLYALTFFFANFGPNTTTF 416
DR+GRV IQ +GF FM + Y+ I +PY+ W S +GFM Y LTFFF+NFGPNTTTF
Sbjct: 354 DRLGRVTIQIIGFLFMAIGYVVIAIPYNSFWESDKHKYGFMLFYCLTFFFSNFGPNTTTF 413
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVC 476
I+PAELFPARFRSTCHGISGA GK+GAIIG V FLWASHD N G+ +L++LGGV
Sbjct: 414 ILPAELFPARFRSTCHGISGASGKIGAIIGAVGFLWASHDRED-NGIGMKASLMLLGGVS 472
Query: 477 FMGFAITYFFTRETMGRSLEENEKEDDSDALCFLR 511
G A+TYFFTRET GRSLEENE ED+ + FLR
Sbjct: 473 LAGVAVTYFFTRETNGRSLEENENEDEYVGIFFLR 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539312|ref|XP_002510721.1| inorganic phosphate transporter, putative [Ricinus communis] gi|223551422|gb|EEF52908.1| inorganic phosphate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/534 (67%), Positives = 429/534 (80%), Gaps = 14/534 (2%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGA--DRF 58
MALKVLSALDSAKTQ+YHFKAII+AGMGLFTDAYDLFC P IMKLLGRIYY + ++
Sbjct: 1 MALKVLSALDSAKTQFYHFKAIIVAGMGLFTDAYDLFCFPAIMKLLGRIYYENNPPNTKY 60
Query: 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTK 118
+IP VV+ M+ ALLGT IGQ++FGR GD +GRR VYGLALMLMV+SSL CGFSIC T+
Sbjct: 61 EIPTTVVTFMVGTALLGTAIGQVIFGRQGDRMGRRSVYGLALMLMVISSLGCGFSICRTR 120
Query: 119 QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178
CVL SLGFFRF LG+GIGGDYPLSATIMSEFANK TRG+FIA VFSMQGFGILASS VT
Sbjct: 121 NCVLVSLGFFRFFLGLGIGGDYPLSATIMSEFANKRTRGSFIAGVFSMQGFGILASSAVT 180
Query: 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVE 238
M VCKIF T + + Q ADI WRLILMLG+IPAA TYYWRM MPE+ARYTALVE
Sbjct: 181 MVVCKIFWGEATNLTNDHTPQ-DADITWRLILMLGAIPAALTYYWRMMMPETARYTALVE 239
Query: 239 QNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVD 298
NV+QAAKDMEKVLDVSI+QIAE+ PLP P YPL+SK+FLRRHGRDLF+C+ +W L+D
Sbjct: 240 NNVLQAAKDMEKVLDVSINQIAEDGPLPQDRPTYPLLSKKFLRRHGRDLFSCSINWFLLD 299
Query: 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID 358
IVFYSSNLFQS+IY Q++ + + +EEAFKVAR QAI AICSTIPGY+VTV+FID
Sbjct: 300 IVFYSSNLFQSQIYSQFL----KLKDDNVYEEAFKVARFQAILAICSTIPGYYVTVYFID 355
Query: 359 RIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIV 418
RIGR IQ +GF FMG++Y A+G+PY++ W K+TN F+FLYALTFFFANFGPNTTTF+V
Sbjct: 356 RIGRRKIQIMGFLFMGIVYFALGIPYNH-WRKNTNKAFLFLYALTFFFANFGPNTTTFMV 414
Query: 419 PAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVN---ATGVTIALLILGGV 475
PAELFPARFRSTCHGI+GA GK+GA+IG + L+AS + ++ N A +T AL++LG V
Sbjct: 415 PAELFPARFRSTCHGIAGAMGKLGALIGAIGVLYASEEQDEENYPKAKPMTTALVVLGVV 474
Query: 476 CFMGFAITYFFTRETMGRSLEENEKEDDSDALCFLRCLTKSSLRTNSPRNNNEV 529
C +G +TY T ETMGRSLEENE +++ + + C ++ + R N++EV
Sbjct: 475 CLIGMVVTYLLTPETMGRSLEENENDNEDEENELMGCFSRGARRRA---NSSEV 525
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086102|ref|XP_002307816.1| high affinity inorganic phosphate transporter [Populus trichocarpa] gi|222857265|gb|EEE94812.1| high affinity inorganic phosphate transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/499 (69%), Positives = 400/499 (80%), Gaps = 11/499 (2%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGA-DRFQ 59
M L+VLSALD AK QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGR+YY D D++Q
Sbjct: 1 MGLRVLSALDGAKIQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRVYYEDNPHDKYQ 60
Query: 60 IPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ 119
IP V++ ML LLGTVIGQLVFG LGD +GRRRVYG++LMLMVLSS+ CGFSIC TK
Sbjct: 61 IPQVVLATMLGTVLLGTVIGQLVFGILGDRMGRRRVYGISLMLMVLSSVGCGFSICRTKT 120
Query: 120 CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTM 179
CVL SLGFFRF LG+GIGGDYPLSATIMSEFANK TRGAFIAAVFSMQG GILASS VTM
Sbjct: 121 CVLVSLGFFRFFLGLGIGGDYPLSATIMSEFANKNTRGAFIAAVFSMQGLGILASSMVTM 180
Query: 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQ 239
V K FEA ++ + ADIAWRLILMLG++PA TYYWRM MPE+ARYTALVE
Sbjct: 181 VVSKTFEAAASKKLSHDHTPEDADIAWRLILMLGAVPAGLTYYWRMMMPETARYTALVEN 240
Query: 240 NVMQAAKDMEKVLDVSISQIAEEYPL--PPSPPQYPLISKRFLRRHGRDLFACATSWLLV 297
N +QAA+DMEKVLDVSI QIAE+ P+ P +P YPLIS +FLR HG DLF+CAT+WLL+
Sbjct: 241 NALQAARDMEKVLDVSIFQIAEDDPMQQPQNPSSYPLISMQFLRVHGIDLFSCATTWLLL 300
Query: 298 DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFI 357
DI FYSS+LFQS+IY + N H Q + + EAFKVA Q + AI +TIPGY+ TV+FI
Sbjct: 301 DIAFYSSSLFQSQIYRK----NLHLQDTNVYNEAFKVAFFQTMVAIAATIPGYWFTVYFI 356
Query: 358 DRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417
DRIGR IQ +GF MG++Y AIG+PY Y W H N GF+ LY LTFFFANFGPNTTTFI
Sbjct: 357 DRIGRKKIQMMGFLCMGIVYFAIGIPYHY-WRTHENKGFLVLYGLTFFFANFGPNTTTFI 415
Query: 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS-HDDNKVNATGVTIALLILGGVC 476
VPAELFPARFRSTCHGISGA GKVGA GT+ FLWA+ ++D ++ A + IAL+ LGG+C
Sbjct: 416 VPAELFPARFRSTCHGISGAMGKVGAFFGTLGFLWATKNNDPRIKA--MRIALVSLGGIC 473
Query: 477 FMGFAITYFFTRETMGRSL 495
+G A+TY FTRET GRSL
Sbjct: 474 LLGMAVTYLFTRETNGRSL 492
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475179|ref|XP_003607875.1| hypothetical protein MTR_4g083960 [Medicago truncatula] gi|124359661|gb|ABN06033.1| General substrate transporter [Medicago truncatula] gi|355508930|gb|AES90072.1| hypothetical protein MTR_4g083960 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/513 (68%), Positives = 410/513 (79%), Gaps = 12/513 (2%)
Query: 2 ALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIP 61
LKVLSALDSAKTQYYHFKAIIIAGMGLFTD+YDLF I I K+LGRIYYSD + Q+
Sbjct: 4 GLKVLSALDSAKTQYYHFKAIIIAGMGLFTDSYDLFSITLITKMLGRIYYSDHQEIRQVN 63
Query: 62 NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ-C 120
VVS ++++ALLGT GQL+FGRLGDL GRR VYG+AL+LM+ SSLA GFSICTTK+ C
Sbjct: 64 PVVVSALVSVALLGTAFGQLLFGRLGDLKGRRHVYGIALLLMLTSSLASGFSICTTKRAC 123
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VL SLGFFRF LG+GIGGDYPLS+TIMSEFANK TRG+FIAAVFSMQGFGILAS+TVTM
Sbjct: 124 VLLSLGFFRFFLGLGIGGDYPLSSTIMSEFANKRTRGSFIAAVFSMQGFGILASATVTMV 183
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
VC +F + ++ +AD+AWRLILM+GS+PAA TYYWRM MPE+ARYTALVEQN
Sbjct: 184 VCLVFR-SGSKPATAFDVPPEADVAWRLILMIGSVPAALTYYWRMMMPETARYTALVEQN 242
Query: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPP-QYPLISKRFLRRHGRDLFACATSWLLVDI 299
V+QAAKDMEKVLDVS+SQI EE+PLPP+ YPL+S+ FL RHGRDLFAC+ +W L+DI
Sbjct: 243 VLQAAKDMEKVLDVSMSQITEEHPLPPATNVAYPLLSREFLWRHGRDLFACSANWFLLDI 302
Query: 300 VFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR 359
VFYS LFQS+IY +Y++ ++EAF +AR QAI A+CSTIPGYF TV+FIDR
Sbjct: 303 VFYSQVLFQSEIYKRYLN---EKDDEDVYQEAFHLARIQAILAVCSTIPGYFFTVYFIDR 359
Query: 360 IGRVAIQALGFFFMGVIYLAIGVPYSYKWSK---HTNFGFMFLYALTFFFANFGPNTTTF 416
+GRV IQ +GFFFM V + A+G PY W+K H N GFM +Y L FFFANFGPNTTTF
Sbjct: 360 VGRVKIQMMGFFFMAVSFFALGFPYYSHWTKGENHDNKGFMVIYGLAFFFANFGPNTTTF 419
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV---NATGVTIALLILG 473
IVPAELFPARFRSTCHGISGA GKVGAIIG+V FLWASH + + G+ +L+ILG
Sbjct: 420 IVPAELFPARFRSTCHGISGAVGKVGAIIGSVGFLWASHKEKEEGYPKGIGMKASLIILG 479
Query: 474 GVCFMGFAITYFFTRETMGRSLEENEKEDDSDA 506
GVC +G +TYFFT+ETMGRSLEENE E A
Sbjct: 480 GVCIVGMFVTYFFTKETMGRSLEENEDEQSHHA 512
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807139|ref|NP_001241607.1| probable inorganic phosphate transporter 1-9-like [Glycine max] gi|265144490|gb|ACY74619.1| phosphate transporter1-8 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/511 (69%), Positives = 412/511 (80%), Gaps = 20/511 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS--DGADRFQI 60
LKVLSALD+A+TQYYHFKAIIIAGMGLFTDAYDLF I I+K++GR+YY +G +R++
Sbjct: 4 LKVLSALDTARTQYYHFKAIIIAGMGLFTDAYDLFSITLIIKIIGRVYYGHREGENRYET 63
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P VVS ++A+ALLGT +GQLVFGRLGDL GRRRVYG AL+LMV SSLA GFSIC K C
Sbjct: 64 PPEVVSALVAVALLGTAVGQLVFGRLGDLKGRRRVYGFALLLMVFSSLASGFSICIRKTC 123
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VL +LGFFRF LG+GIGGDYPLS+TIMSEFANK TRG+FIAAVFSMQGFGILASSTVTMA
Sbjct: 124 VLLTLGFFRFFLGLGIGGDYPLSSTIMSEFANKKTRGSFIAAVFSMQGFGILASSTVTMA 183
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
VC IF A + + +AD+AWRLILMLGS+PAA TYYWRM MPE+ARYTALVEQN
Sbjct: 184 VCSIFGAAS--------KNSEADVAWRLILMLGSVPAAMTYYWRMMMPETARYTALVEQN 235
Query: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV 300
VMQAAKDMEKVLDV++SQIAEE PLPP+P YPL+S FLRRHG DLFAC+++W LVDIV
Sbjct: 236 VMQAAKDMEKVLDVTLSQIAEEDPLPPTPHPYPLLSWEFLRRHGPDLFACSSTWFLVDIV 295
Query: 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI 360
FYS LFQS+IY +Y+D + ++E F A QA+ A+CSTIPGYF +++FID+
Sbjct: 296 FYSQVLFQSEIYKRYLD---KKEDVDVYQETFHAAWIQAVIAVCSTIPGYFFSMYFIDKW 352
Query: 361 GRVAIQALGFFFMGVIYLAIGVPYSYKWS---KHTNFGFMFLYALTFFFANFGPNTTTFI 417
GRV IQ +GFFFM + + +IG+PY W+ H N FM LY L FFFANFGPNTTTFI
Sbjct: 353 GRVKIQMMGFFFMALAFFSIGIPYYSYWTTKEHHKNKVFMVLYGLAFFFANFGPNTTTFI 412
Query: 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH---DDNKVNATGVTIALLILGG 474
VPAELFPARFRS+CHGISGA GKVGAIIG+V FLWASH +D G+ ++L+ILGG
Sbjct: 413 VPAELFPARFRSSCHGISGAVGKVGAIIGSVGFLWASHRKKEDGYPKGIGMKVSLIILGG 472
Query: 475 VCFMGFAITYFFTRETMGRSLEENEKE-DDS 504
VC +G ITYFFTRETMGRSLEENE E +DS
Sbjct: 473 VCLLGMVITYFFTRETMGRSLEENEVEIEDS 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061843|ref|XP_002300626.1| high affinity inorganic phosphate transporter [Populus trichocarpa] gi|222842352|gb|EEE79899.1| high affinity inorganic phosphate transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/529 (65%), Positives = 410/529 (77%), Gaps = 12/529 (2%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGA--DRF 58
MALKVL ALD+AK QYYHFKAIIIAGMGLFTDAYDLFCIPP+MKLLGR+YY D +++
Sbjct: 1 MALKVLYALDAAKIQYYHFKAIIIAGMGLFTDAYDLFCIPPVMKLLGRVYYEDKPVPEKY 60
Query: 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTK 118
IP V++ ML ALLGTVIGQLVFGRLGD +GRR VYG++L+LMV SS+ CGFS C TK
Sbjct: 61 HIPRVVLATMLGTALLGTVIGQLVFGRLGDRMGRRHVYGISLILMVFSSIGCGFSFCRTK 120
Query: 119 QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178
CVL SLG FRF LG+GIGGDYPLSATIMSEFANK TRGAF+AA+FSMQG GILASS VT
Sbjct: 121 TCVLVSLGIFRFFLGLGIGGDYPLSATIMSEFANKKTRGAFVAALFSMQGLGILASSMVT 180
Query: 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVE 238
M V KIFEA +++ N ADI WRLIL+LG++PA TYYWRM MPE+ARYTALVE
Sbjct: 181 MVVSKIFEAAASKNLSGNHTPEDADIVWRLILILGAVPAGLTYYWRMMMPETARYTALVE 240
Query: 239 QNVMQAAKDMEKVLDVSISQIAEE--YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLL 296
NV+QA KDMEKVLDVSIS+IAE+ L PP Y L+SK+F RRHG DLF+CAT+WLL
Sbjct: 241 NNVLQATKDMEKVLDVSISRIAEDDLIYLQQDPPSYSLLSKQFFRRHGVDLFSCATTWLL 300
Query: 297 VDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356
+DI FYSS+LFQS+IY ++D + + +EE FKVA QA+ A+ + IPGY+ TV+F
Sbjct: 301 LDIAFYSSSLFQSQIYKMHLD----LKNTNVYEETFKVAVFQAMVALVAAIPGYWFTVYF 356
Query: 357 IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416
IDRIGR IQ +GF MG++Y A+G+PY Y W +H N GF+FLY LTFFFANFGPNTTTF
Sbjct: 357 IDRIGRRKIQMMGFLCMGIVYFALGIPYQY-WGEHKNKGFLFLYGLTFFFANFGPNTTTF 415
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHD---DNKVNATGVTIALLILG 473
IVPAELFPARFRSTCHGISGA GKVGA GT+ FLWAS+ D+ + IAL+ LG
Sbjct: 416 IVPAELFPARFRSTCHGISGAVGKVGAFFGTLGFLWASNHNGPDDLPRIGPMRIALVSLG 475
Query: 474 GVCFMGFAITYFFTRETMGRSLEENEKEDDSDALCFLRCLTKSSLRTNS 522
+C G A+TY FTRET GRSLEENE ED++ LC RC + N+
Sbjct: 476 VICLFGMAVTYLFTRETNGRSLEENENEDENTELCLFRCHMDADRHPNT 524
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227121296|gb|ACP19338.1| phosphate transporter 12 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/501 (69%), Positives = 404/501 (80%), Gaps = 19/501 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS--DGADRFQI 60
LKVLSALD+A+TQYYHFKAIIIAGMGLFTDAYDLF I I+K++GR+YY +G +R++
Sbjct: 4 LKVLSALDTARTQYYHFKAIIIAGMGLFTDAYDLFSITLIIKIIGRVYYGHREGENRYET 63
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P VVS ++A+ALLGT +GQLVFGRLGDL GRRRVYG AL+LMV SSLA GFSIC K C
Sbjct: 64 PPEVVSALVAVALLGTAVGQLVFGRLGDLKGRRRVYGFALLLMVFSSLASGFSICIRKTC 123
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VL +LGFFRF LG+GIGGDYPLS+TIMSEFANK TRG+FIAAVFSMQGFGILASSTVTMA
Sbjct: 124 VLLTLGFFRFFLGLGIGGDYPLSSTIMSEFANKKTRGSFIAAVFSMQGFGILASSTVTMA 183
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
VC IF A + + +AD+AWRLILMLGS+PAA TYYWRM MPE+ARYTALVEQN
Sbjct: 184 VCSIFGAAS--------KNSEADVAWRLILMLGSVPAAMTYYWRMMMPETARYTALVEQN 235
Query: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV 300
VMQAAKDMEKVLDV++SQIAEE PLPP+P YPL+S FLRRHG DLFAC+++W LVDIV
Sbjct: 236 VMQAAKDMEKVLDVTLSQIAEEDPLPPTPHPYPLLSWEFLRRHGPDLFACSSTWFLVDIV 295
Query: 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI 360
FYS LFQS+IY +Y+D + ++E F A QA+ A+CSTIPGYF +++FID+
Sbjct: 296 FYSQVLFQSEIYKRYLD---KKEDVDVYQETFHAAWIQAVIAVCSTIPGYFFSMYFIDKW 352
Query: 361 GRVAIQALGFFFMGVIYLAIGVPYSYKWS---KHTNFGFMFLYALTFFFANFGPNTTTFI 417
GRV IQ +GFFFM + + +IG+PY W+ H N FM LY L FFFANFGPNTTTFI
Sbjct: 353 GRVKIQMMGFFFMALAFFSIGIPYYSYWTTKEHHKNKVFMVLYGLAFFFANFGPNTTTFI 412
Query: 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH---DDNKVNATGVTIALLILGG 474
VPAELFPARFRS+CHGISGA GKVGAIIG+V FLWASH +D G+ ++L+ILGG
Sbjct: 413 VPAELFPARFRSSCHGISGAVGKVGAIIGSVGFLWASHRKKEDGYPKGIGMKVSLIILGG 472
Query: 475 VCFMGFAITYFFTRETMGRSL 495
VC +G ITYFFTRETMGRSL
Sbjct: 473 VCLLGMVITYFFTRETMGRSL 493
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806882|ref|NP_001241574.1| probable inorganic phosphate transporter 1-9-like [Glycine max] gi|265144515|gb|ACY74620.1| phosphate transporter1-9 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/508 (68%), Positives = 409/508 (80%), Gaps = 19/508 (3%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS--DGADRFQI 60
LKVLS LD+++TQYYHFKAIIIAGMGLFTDAYDLF I I+K++GR+YY +G R++
Sbjct: 4 LKVLSTLDTSRTQYYHFKAIIIAGMGLFTDAYDLFSITLIIKIIGRVYYDHREGEHRYET 63
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
P VVS ++A+ALLGT +GQLVFGRLGDL GRRRVYG +L+LMV SSLA GFSIC K C
Sbjct: 64 PPEVVSALVAVALLGTAVGQLVFGRLGDLKGRRRVYGFSLLLMVFSSLASGFSICRRKTC 123
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
VL +LGFFRF LG+GIGGDYPLS+TIMSEFANK TRG+FIAAVFSMQGFGILASSTVTMA
Sbjct: 124 VLLTLGFFRFFLGLGIGGDYPLSSTIMSEFANKKTRGSFIAAVFSMQGFGILASSTVTMA 183
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
VC IF A + + +AD+AWRLILMLGS+PAA TYYWRM MPE+ARYTALVEQN
Sbjct: 184 VCSIFRAAS--------KNSEADLAWRLILMLGSVPAAMTYYWRMMMPETARYTALVEQN 235
Query: 241 VMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIV 300
VMQAAKDMEKVLDV++SQIAEE+PLPP+P YPL+S+ FLRRHGRDLFAC+++W LVDIV
Sbjct: 236 VMQAAKDMEKVLDVTLSQIAEEHPLPPTPHPYPLLSREFLRRHGRDLFACSSTWFLVDIV 295
Query: 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI 360
FYS LFQS+IY +Y+D + ++E F VA QA+ A+CSTIPGYF +V+FID+
Sbjct: 296 FYSQVLFQSEIYKRYLD---KKEEVDVYQETFHVAWIQAVIAVCSTIPGYFFSVYFIDKW 352
Query: 361 GRVAIQALGFFFMGVIYLAIGVPYSYKWS---KHTNFGFMFLYALTFFFANFGPNTTTFI 417
GRV IQ +GFFFM + + AIG+PY W+ + N GFM LY L FFFANFGPNTTTFI
Sbjct: 353 GRVKIQMMGFFFMALAFFAIGIPYYSFWTTEDHNMNKGFMVLYGLAFFFANFGPNTTTFI 412
Query: 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH---DDNKVNATGVTIALLILGG 474
VPAELFPARFRSTCHGISGA GKVGAIIG+V FLWASH ++ G+ + L+ILG
Sbjct: 413 VPAELFPARFRSTCHGISGAVGKVGAIIGSVGFLWASHKKKENGYPKGIGMEVTLIILGV 472
Query: 475 VCFMGFAITYFFTRETMGRSLEENEKED 502
VC +G +TY FTRETMGRSLEENE E
Sbjct: 473 VCLLGMLVTYLFTRETMGRSLEENEVES 500
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 536 | ||||||
| TAIR|locus:2011681 | 532 | PHT1;9 "AT1G76430" [Arabidopsi | 0.917 | 0.924 | 0.584 | 4.7e-151 | |
| TAIR|locus:2037390 | 534 | PHT1;8 "phosphate transporter | 0.929 | 0.932 | 0.578 | 3.3e-150 | |
| TAIR|locus:2064895 | 534 | PHT1;4 "phosphate transporter | 0.936 | 0.940 | 0.487 | 1.8e-119 | |
| TAIR|locus:2102450 | 535 | PHT1;7 "AT3G54700" [Arabidopsi | 0.932 | 0.934 | 0.483 | 5.4e-118 | |
| TAIR|locus:2176471 | 521 | PHT1;3 "phosphate transporter | 0.930 | 0.957 | 0.495 | 6.9e-118 | |
| TAIR|locus:2176481 | 524 | PHT1;2 "phosphate transporter | 0.916 | 0.937 | 0.502 | 3e-117 | |
| TAIR|locus:2176461 | 524 | PHT1;1 "AT5G43350" [Arabidopsi | 0.916 | 0.937 | 0.502 | 4.9e-117 | |
| TAIR|locus:2046432 | 542 | PHT1;5 "phosphate transporter | 0.929 | 0.918 | 0.480 | 7.1e-116 | |
| TAIR|locus:2176451 | 516 | PHT1;6 "phosphate transporter | 0.921 | 0.957 | 0.461 | 2.6e-111 | |
| DICTYBASE|DDB_G0282311 | 663 | DDB_G0282311 "MFS family prote | 0.432 | 0.349 | 0.351 | 4.9e-53 |
| TAIR|locus:2011681 PHT1;9 "AT1G76430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
Identities = 302/517 (58%), Positives = 364/517 (70%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPN 62
L +LSALD+A+ Q+YHFKAII+AGMGLFTDAYDLFCI PIMK++ +IYY + I
Sbjct: 4 LSLLSALDAARIQWYHFKAIIVAGMGLFTDAYDLFCIAPIMKMISQIYYHKDS----IGT 59
Query: 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQ-CV 121
A++S A+ALLGT +GQL+FG LGD +GRR+VYG CGFS+CTT++ CV
Sbjct: 60 ALLSTSYAIALLGTALGQLIFGYLGDRVGRRKVYGLSLLIMVFSSFGCGFSVCTTRRSCV 119
Query: 122 XXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181
DYPLSATIMSEFANK TRGAFIAAVFSMQG GIL SS VTM V
Sbjct: 120 MVSLGFFRFVLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILMSSAVTMVV 179
Query: 182 CKIF----EATTTRDNDVNKRQ---HQADIAWRLILMLGSIPAAFTYYWRMTMPESARYT 234
C F E ++ + N ++DIAWRLILM+G++PAA T+YWRM MPE+ARYT
Sbjct: 180 CLAFKNAGEGSSEKTNVAGLETLAPPESDIAWRLILMIGALPAALTFYWRMLMPETARYT 239
Query: 235 ALVEQNVMQAAKDMEKVLDVS-ISQIAEEXXXXX----XXXXXXXISKRFLRRHGRDLFA 289
ALVE NV+QAAKDM++V+ VS ISQI E+ S+RFL HGRDLFA
Sbjct: 240 ALVENNVVQAAKDMQRVMSVSMISQITEDSSSELEQPPSSSSYKLFSRRFLSLHGRDLFA 299
Query: 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPG 349
+ +W LVD+VFY+SNL S+I++ N + + ++ AF+VA+ AI A CSTIPG
Sbjct: 300 ASANWFLVDVVFYTSNLLLSQIFNF---SNKPLNSTNVYDSAFEVAKLAAIVAACSTIPG 356
Query: 350 YFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKH--TNFGFMFLYALTFFFA 407
Y+ TV+FID+IGRV IQ +GFF M V+YL G+PYS+ WSKH TN GFM LY L FFF+
Sbjct: 357 YWFTVYFIDKIGRVKIQMMGFFLMAVVYLVAGIPYSWYWSKHEKTNKGFMVLYGLIFFFS 416
Query: 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS-H--DDNKVNATG 464
NFGPNTTTFI+PAELFPARFRSTCHGISGA GK GAI+GTV FLWA+ H +D +
Sbjct: 417 NFGPNTTTFIIPAELFPARFRSTCHGISGAAGKFGAIVGTVGFLWATRHHEEDGFPDVKR 476
Query: 465 VTIALLILGGVCFMGFAITYFFTRETMGRSLEENEKE 501
V IA LILGGVC G +TY FTRETMGRSLEENE E
Sbjct: 477 VRIAFLILGGVCIAGMIVTYLFTRETMGRSLEENEDE 513
|
|
| TAIR|locus:2037390 PHT1;8 "phosphate transporter 1;8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 301/520 (57%), Positives = 360/520 (69%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
M +KVLS+LD A+TQ+YHFKAII+AGMGLFTDAYDLFCI P+MK++ +YY+ + I
Sbjct: 1 MPIKVLSSLDVARTQWYHFKAIIVAGMGLFTDAYDLFCIAPVMKMISHVYYNGDS----I 56
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQ- 119
AV+S A+ALLGT GQLVFG LGD +GRRRVYG CGFS+CTT++
Sbjct: 57 NTAVLSTSYAIALLGTATGQLVFGYLGDRVGRRRVYGLCLIIMILSSFGCGFSVCTTRRS 116
Query: 120 CVXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTM 179
CV DYPLSATIMSEFANK TRGAFIAAVFSMQG GIL SS VTM
Sbjct: 117 CVMVSLGFFRFFLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILVSSAVTM 176
Query: 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQ 239
AVC F+ + +AD+AWRLILM+G++PAA T+YWRM MPE+ARYTALVE
Sbjct: 177 AVCVAFKRSGGGLEVDAAAPTEADLAWRLILMIGALPAALTFYWRMLMPETARYTALVEN 236
Query: 240 NVMQAAKDMEKVLDVSISQIAEEXXXXXXXX----XXXXISKRFLRRHGRDLFACATSWL 295
N++QAAKDM++V+ S S I++E S+ F R HGRDLFA + +W
Sbjct: 237 NIVQAAKDMQRVM--SRSHISDEATTDPPPPPPPPSYKLFSRCFFRLHGRDLFAASFNWF 294
Query: 296 LVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVF 355
LVDIVFY+SNL S I+ Y + ++ AF+VA AI A CSTIPGY+ TV+
Sbjct: 295 LVDIVFYTSNLLLSHIFSHY--SKKPSTAENVYDAAFEVAELGAIIAACSTIPGYWFTVY 352
Query: 356 FIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKH--TNFGFMFLYALTFFFANFGPNT 413
FID+IGRV IQ +GFFFM VIYL G+PYS+ WSKH N GFM LY L FFF NFGPNT
Sbjct: 353 FIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKHEHNNKGFMVLYGLVFFFCNFGPNT 412
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA-----SHDDNKV--NATGVT 466
TTFI+PAE FPARFRSTCHGISGA GK+GAI+GTV FLWA S D N++ +
Sbjct: 413 TTFIIPAEHFPARFRSTCHGISGAAGKLGAIVGTVGFLWATKKMESDDKNQIYPEVNRMR 472
Query: 467 IALLILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSDA 506
IA LILGGVC G +TYFFT+ETMGRSLEENE + D++A
Sbjct: 473 IAFLILGGVCIAGILVTYFFTKETMGRSLEENEHDQDNNA 512
|
|
| TAIR|locus:2064895 PHT1;4 "phosphate transporter 1;4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 254/521 (48%), Positives = 323/521 (61%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS-DGADR-FQI 60
L+VL+ALD AKTQ+YHF AIIIAGMG FTDAYDLFCI + KLLGRIYY +GA + +
Sbjct: 6 LQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGAQKPGTL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQC 120
P V + + +A GT+ GQL FG LGD +GR++VYG G S +
Sbjct: 66 PPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFGHEPKA 125
Query: 121 VXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V DYPLSATIMSE+ANK TRGAF++AVF+MQGFGI+A +
Sbjct: 126 VMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFVSAVFAMQGFGIMAGGIFAII 185
Query: 181 VCKIFEAT----TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
+ FEA D+ + QAD+ WR+ILM G+IPAA TYY R MPE+ARYTAL
Sbjct: 186 ISSAFEAKFPSPAYADDALGSTIPQADLVWRIILMAGAIPAAMTYYSRSKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVLDVSIS--QIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSW 294
V ++ QAA DM KVL V I Q E SK F+ RHG L ++W
Sbjct: 246 VAKDAKQAASDMSKVLQVEIEPEQQKLEEISKEKSKAFGLFSKEFMSRHGLHLLGTTSTW 305
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FYS NLFQ I+ I Q+ +A +E FK+AR Q + A+CST+PGY+ TV
Sbjct: 306 FLLDIAFYSQNLFQKDIFSA-IGWIPPAQSMNAIQEVFKIARAQTLIALCSTVPGYWFTV 364
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
FID IGR AIQ +GFFFM V A+ +PY++ K GF+ +Y+LTFFFANFGPN T
Sbjct: 365 AFIDVIGRFAIQMMGFFFMTVFMFALAIPYNHWTHKENRIGFVIMYSLTFFFANFGPNAT 424
Query: 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH--DDNKVNA-----TGVTI 467
TF+VPAE+FPARFRSTCHGIS A GK+GA++G FL+ + D +K +A GV
Sbjct: 425 TFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPPGIGVRN 484
Query: 468 ALLILGGVCFMGFAITYFFTRETMGRSLEE--NEKEDDSDA 506
+L++LG V F+G T F E+ G+SLEE E ED+ ++
Sbjct: 485 SLIVLGVVNFLGILFT-FLVPESKGKSLEEMSGENEDNENS 524
|
|
| TAIR|locus:2102450 PHT1;7 "AT3G54700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 252/521 (48%), Positives = 320/521 (61%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS-DGADR-FQI 60
L VL+ALD AKTQ+YHF AIIIAGMG FTDAYDLFCI + KLLGRIYY DG+++ +
Sbjct: 6 LNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSEKPGTL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQC 120
P V + + +A GT+ GQL FG LGD +GR++VYG G S + +
Sbjct: 66 PPNVSAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFGSNPKT 125
Query: 121 VXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V DYPLSATIMSE+ANK TRGAFIAAVF+MQGFGIL +
Sbjct: 126 VMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGGIFAII 185
Query: 181 VCKIFEAT----TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V FEA T + + + QAD WR+ILM+G++PAA TYY R MPE+ARYTAL
Sbjct: 186 VSAAFEAKFPAPTYQIDALASTVPQADYVWRIILMVGALPAAMTYYSRSKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVLDVSISQIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSWLL 296
V ++ AA +M KVL V I AE+ SK F++RHG L ++W L
Sbjct: 246 VAKDAKLAASNMSKVLQVEIE--AEQQGTEDKSNSFGLFSKEFMKRHGLHLLGTTSTWFL 303
Query: 297 VDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356
+DI FYS NLFQ I+ I QT +A +E FK+AR Q + A+CST+PGY+ TV F
Sbjct: 304 LDIAFYSQNLFQKDIFSA-IGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGYWFTVAF 362
Query: 357 IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416
ID IGR AIQ +GFFFM V A+ +PY + K GF+ +Y+LTFFFANFGPN TTF
Sbjct: 363 IDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFGPNATTF 422
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNAT-------GVTIAL 469
+VPAE+FPARFRSTCHGIS A GK+GA++G FL+ + +K GV +L
Sbjct: 423 VVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGIGVKNSL 482
Query: 470 LILGGVCFMGFAITYFFTRETMGRSLEE----NEKEDDSDA 506
++LG V +G T E+ G+SLEE NE+ D+S +
Sbjct: 483 IVLGVVNLLGMVFT-LLVPESKGKSLEEMSGENEQNDESSS 522
|
|
| TAIR|locus:2176471 PHT1;3 "phosphate transporter 1;3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 257/519 (49%), Positives = 318/519 (61%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSD--GADRFQI 60
L VL ALD AKTQ YHF AI+IAGMG FTDAYDLFC+ + KLLGR+YY + A +
Sbjct: 6 LGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRLYYFNPTSAKPGSL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQC 120
P V + + +AL GT+ GQL FG LGD +GR++VYG G S+ + +
Sbjct: 66 PPHVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLIMMILCSVASGLSLGNSAKG 125
Query: 121 VXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V DYPLSATIMSE+ANK TRGAFIAAVF+MQG GILA V +A
Sbjct: 126 VMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALA 185
Query: 181 VCKIFEA---TTTRDND-VNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V IF+ + T + D QAD WR+I+M G++PAA TYYWRM MPE+ARYTAL
Sbjct: 186 VSSIFDKKFPSPTYEQDRFLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVL--DVSISQIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSW 294
V +N+ QA DM KVL D+ + + E+ SK FLRRHG L ++W
Sbjct: 246 VAKNIKQATADMSKVLQTDLELEERVEDDVKDPKKNYGL-FSKEFLRRHGLHLLGTTSTW 304
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FYS NLFQ I+ I T +A E FK+AR Q + A+CST+PGY+ TV
Sbjct: 305 FLLDIAFYSQNLFQKDIFSA-IGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGYWFTV 363
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTN-FGFMFLYALTFFFANFGPNT 413
FID IGR AIQ +GFF M V AI PY++ W N GF+ +Y+LTFFFANFGPN
Sbjct: 364 AFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNH-WILPDNRIGFVVMYSLTFFFANFGPNA 422
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH--DDNKVNA-----TGVT 466
TTFIVPAE+FPAR RSTCHGIS A GK GAI+G FL+A+ D K +A GV
Sbjct: 423 TTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGIGVK 482
Query: 467 IALLILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSD 505
+L++LG + F+G T F E G+SLEE E + D
Sbjct: 483 NSLIMLGVINFVGMLFT-FLVPEPKGKSLEELSGEAEVD 520
|
|
| TAIR|locus:2176481 PHT1;2 "phosphate transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 257/511 (50%), Positives = 311/511 (60%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYY--SDGADRFQI 60
L VL ALD AKTQ YHF AI+IAGMG FTDAYDLFC+ + KLLGRIYY + A +
Sbjct: 6 LGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESAKPGSL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQC 120
P V + + +AL GT+ GQL FG LGD +GR++VYG G S +
Sbjct: 66 PPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLIMMILCSVASGLSFGNEAKG 125
Query: 121 VXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V DYPLSATIMSE+ANK TRGAFIAAVF+MQG GILA V +A
Sbjct: 126 VMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALA 185
Query: 181 VCKIFE----ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V IF+ A T N Q D WR+I+M G++PAA TYYWRM MPE+ARYTAL
Sbjct: 186 VSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVL--DVSISQIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSW 294
V +N+ QA DM KVL D+ + + E+ SK FLRRHG L ++W
Sbjct: 246 VAKNIKQATADMSKVLQTDIELEERVEDDVKDPRQNYGL-FSKEFLRRHGLHLLGTTSTW 304
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FYS NLFQ I+ I T +A E F++AR Q + A+CST+PGY+ TV
Sbjct: 305 FLLDIAFYSQNLFQKDIFSA-IGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTV 363
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTN-FGFMFLYALTFFFANFGPNT 413
FID IGR IQ GFF M V AI PY++ W K N GF+ +Y+LTFFFANFGPN
Sbjct: 364 AFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNH-WIKPENRIGFVVMYSLTFFFANFGPNA 422
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH--DDNKVNA-----TGVT 466
TTFIVPAE+FPAR RSTCHGIS A GK GAIIG FL+A+ D KV+A GV
Sbjct: 423 TTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNQDKAKVDAGYPPGIGVK 482
Query: 467 IALLILGGVCFMGFAITYFFTRETMGRSLEE 497
+L++LG + F+G T F E G+SLEE
Sbjct: 483 NSLIVLGVLNFIGMLFT-FLVPEPKGKSLEE 512
|
|
| TAIR|locus:2176461 PHT1;1 "AT5G43350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 257/511 (50%), Positives = 311/511 (60%)
Query: 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYY--SDGADRFQI 60
L VL ALD AKTQ YHF AI+IAGMG FTDAYDLFC+ + KLLGRIYY + A +
Sbjct: 6 LGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESAKPGSL 65
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQC 120
P V + + +AL GT+ GQL FG LGD +GR++VYG G S +
Sbjct: 66 PPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLVMMILCSVASGLSFGHEAKG 125
Query: 121 VXXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
V DYPLSATIMSE+ANK TRGAFIAAVF+MQG GILA V +A
Sbjct: 126 VMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGGFVALA 185
Query: 181 VCKIFE----ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTAL 236
V IF+ A T N Q D WR+I+M G++PAA TYYWRM MPE+ARYTAL
Sbjct: 186 VSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETARYTAL 245
Query: 237 VEQNVMQAAKDMEKVL--DVSISQIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSW 294
V +N+ QA DM KVL D+ + + E+ SK FLRRHG L ++W
Sbjct: 246 VAKNIKQATADMSKVLQTDIELEERVEDDVKDPKQNYGL-FSKEFLRRHGLHLLGTTSTW 304
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FYS NLFQ I+ I T +A E F++AR Q + A+CST+PGY+ TV
Sbjct: 305 FLLDIAFYSQNLFQKDIFSA-IGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYWFTV 363
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTN-FGFMFLYALTFFFANFGPNT 413
FID IGR IQ GFF M V AI PY++ W K N GF+ +Y+LTFFFANFGPN
Sbjct: 364 AFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNH-WIKPENRIGFVVMYSLTFFFANFGPNA 422
Query: 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA--SHDDNKVNA-----TGVT 466
TTFIVPAE+FPAR RSTCHGIS A GK GAI+G FL+A S D KV+A GV
Sbjct: 423 TTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGIGVK 482
Query: 467 IALLILGGVCFMGFAITYFFTRETMGRSLEE 497
+L++LG + F+G T F E G+SLEE
Sbjct: 483 NSLIMLGVLNFIGMLFT-FLVPEPKGKSLEE 512
|
|
| TAIR|locus:2046432 PHT1;5 "phosphate transporter 1;5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 251/522 (48%), Positives = 314/522 (60%)
Query: 4 KVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS-DGADR-FQIP 61
+VL+ALD+AKTQ YHF AI+IAGMG FTDAYDLF I + KLLGRIYY D + + +P
Sbjct: 7 EVLNALDAAKTQMYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYHVDSSKKPGTLP 66
Query: 62 NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQCV 121
V + + +A GT+ GQL FG LGD +GR++VYG G S + V
Sbjct: 67 PNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGITLMLMVLCSLGSGLSFGHSANGV 126
Query: 122 XXXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181
DYPLSATIMSE+ANK TRGAFIAAVF+MQGFGILA V++ V
Sbjct: 127 MATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVSLIV 186
Query: 182 CKIFE----ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALV 237
F+ A T + V QAD WR++LM G+IPA TYYWRM MPE+ARYTALV
Sbjct: 187 SSTFDHAFKAPTYEVDPVGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPETARYTALV 246
Query: 238 EQNVMQAAKDMEKVLDVSISQIAEEXXXXXXXXXX-----XXISKRFLRRHGRDLFACAT 292
+N QAA DM KVL V + IAEE ++ F RRHG L T
Sbjct: 247 ARNTKQAASDMSKVLQVDL--IAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLLGTTT 304
Query: 293 SWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFV 352
+W L+DI +YSSNLFQ IY I +T +A E F V++ Q + A+C T+PGY+
Sbjct: 305 TWFLLDIAYYSSNLFQKDIYTA-IGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPGYWF 363
Query: 353 TVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTN-FGFMFLYALTFFFANFGP 411
TV FID +GR IQ +GF FM + A+ +PY + W N GF+ +Y+LT FFANFGP
Sbjct: 364 TVAFIDILGRFFIQLMGFIFMTIFMFALAIPYDH-WRHRENRIGFLIMYSLTMFFANFGP 422
Query: 412 NTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA--SHDDNKVNA-----TG 464
N TTF+VPAE+FPAR RSTCHGIS A GK GAI+G FL+A S D K +A G
Sbjct: 423 NATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPGIG 482
Query: 465 VTIALLILGGVCFMGFAITYFFTRETMGRSLEENEKEDDSDA 506
V +LL+L V F+G T E+ G+SLEE +ED+ +
Sbjct: 483 VRNSLLMLACVNFLGIVFT-LLVPESKGKSLEEISREDEEQS 523
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| TAIR|locus:2176451 PHT1;6 "phosphate transporter 1;6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 236/511 (46%), Positives = 310/511 (60%)
Query: 5 VLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS--DGADRFQIPN 62
+L ALD AKTQ+YH A++++GMG FTD+YDLF I I KLLGRIYY + +P+
Sbjct: 9 ILKALDVAKTQWYHVTAVVVSGMGFFTDSYDLFVISLITKLLGRIYYQVPGSSSPGSLPD 68
Query: 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGXXXXXXXXXXXXCGFSICTTKQCVX 122
+ + + +A GT IGQ+ FG LGD +GR+RVYG G S+ + V
Sbjct: 69 GISAAVSGVAFAGTFIGQIFFGCLGDKLGRKRVYGLTLLIMTICSICSGLSLGRDPKTVM 128
Query: 123 XXXXXXXXXXXXXXXXDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182
DYPLSATIMSE++NK TRGAFIAAVF MQG GILA+ V++ V
Sbjct: 129 VTLCFFRFWLGFGIGGDYPLSATIMSEYSNKRTRGAFIAAVFGMQGIGILAAGAVSLLVS 188
Query: 183 KIFEAT-TTRD---NDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVE 238
+FE+ +R + QAD WR+ILM+G++PA TYYWRM MPE+ARYTALV
Sbjct: 189 AVFESKFPSRAYILDGAASTVPQADYVWRIILMVGALPALLTYYWRMKMPETARYTALVS 248
Query: 239 QNVMQAAKDMEKVLDVSI-SQIAEEXXXXXXXXXXXXISKRFLRRHGRDLFACATSWLLV 297
+N QAA DM KVL+V I + A+ S +FLRRHG L A++W L+
Sbjct: 249 KNAEQAALDMTKVLNVDIEASAAKNDQARVSSDEFGLFSMKFLRRHGLHLLGTASTWFLL 308
Query: 298 DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFI 357
DI FYS NLFQ I+ I +T +A +E + +A+ Q I A CST+PGYF TV FI
Sbjct: 309 DIAFYSQNLFQKDIFTT-IGWLPSAKTMNAIQELYMIAKAQTIIACCSTVPGYFFTVGFI 367
Query: 358 DRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTN-FGFMFLYALTFFFANFGPNTTTF 416
D +GR IQ +GF M + L++ +PY + W+ N GF+ LY+ TFFF+NFGPN TTF
Sbjct: 368 DYMGRKKIQIMGFAMMTIFMLSLAIPYHH-WTLPANRIGFVVLYSFTFFFSNFGPNATTF 426
Query: 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVC 476
IVPAE+FPAR RSTCHGIS A GK GA++G+ F V A G++ L I+ G+
Sbjct: 427 IVPAEIFPARIRSTCHGISAASGKAGAMVGSFGF------SALVKALGMSNTLYIMAGIN 480
Query: 477 FMGFAITYFFTRETMGRSLEENEKEDDSDAL 507
+G +T F ET G+SLEE E + + +
Sbjct: 481 LLGLLLT-FTIPETNGKSLEELSGETEPEKI 510
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| DICTYBASE|DDB_G0282311 DDB_G0282311 "MFS family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 4.9e-53, Sum P(2) = 4.9e-53
Identities = 90/256 (35%), Positives = 139/256 (54%)
Query: 280 LRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQA 339
+ ++ + L A W + DI FY++ LF I + G D + ++E +
Sbjct: 412 IMKYWKTLAGTAGGWFIFDITFYANGLFNGTI----VSLIGFDDASNTYDEIWNTTLVSL 467
Query: 340 IFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFL 399
A+ +PGYFV + IDR+GR +Q LGF +G+ Y+ +G+ Y + F+ L
Sbjct: 468 YLALIG-LPGYFVGIALIDRLGRKKLQMLGFALLGITYMVMGISYDH--IVKIKALFIVL 524
Query: 400 YALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG--TVAFLWASHDD 457
Y LTFFF N GPNTTTF++P+E FP + R+TCHG+S A GK+GA+IG T+ L+ ++
Sbjct: 525 YGLTFFFGNAGPNTTTFVLPSESFPTKIRATCHGLSAAAGKIGAVIGGATIKPLFTNY-- 582
Query: 458 NKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLEENEK---EDDSDALCFLRCLT 514
G+ L++ G + F+G +T+ ETMG+ + E+E ++ SD LR T
Sbjct: 583 ------GLGKTLIVCGAIAFVGLILTFLIVEETMGKPIIEDEDIQLDNISDDPS-LREST 635
Query: 515 KSS---LRTNSPRNNN 527
SS + N NNN
Sbjct: 636 GSSSSGVEDNIDNNNN 651
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q69T94 | PT110_ORYSJ | No assigned EC number | 0.5972 | 0.9235 | 0.8967 | yes | no |
| Q8H6G7 | PHT19_ORYSJ | No assigned EC number | 0.5580 | 0.9235 | 0.8505 | yes | no |
| Q01MW8 | PHT14_ORYSI | No assigned EC number | 0.5442 | 0.9309 | 0.9275 | N/A | no |
| Q8H6H2 | PHT14_ORYSJ | No assigned EC number | 0.5442 | 0.9309 | 0.9275 | yes | no |
| Q9S735 | PHT19_ARATH | No assigned EC number | 0.6305 | 0.9179 | 0.9248 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00002927001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (540 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 536 | |||
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 1e-173 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-31 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-23 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 4e-22 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-19 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 4e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-07 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 9e-07 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 8e-05 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 | |
| PRK11043 | 401 | PRK11043, PRK11043, putative transporter; Provisio | 5e-04 | |
| PRK10642 | 490 | PRK10642, PRK10642, proline/glycine betaine transp | 6e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.003 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.003 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 497 bits (1281), Expect = e-173
Identities = 224/511 (43%), Positives = 300/511 (58%), Gaps = 26/511 (5%)
Query: 8 ALDSAKTQ---YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAV 64
AL+ A T + HF+AI+IAG+G FTD+YDLFCI + K+LG +YY +P++V
Sbjct: 1 ALEEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKG---PLPSSV 57
Query: 65 VSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGS 124
+ + A +GT+ GQL FG L D +GR+RVYG+ L++M+++++A G S ++ + V+ +
Sbjct: 58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMAT 117
Query: 125 LGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184
L F+RF LGVGIGGDYPLSA I SEFA K RGA +AAVF+MQGFGILA + V + V
Sbjct: 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG 177
Query: 185 FEATTTRDNDVNK----RQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
F+ + D D WR+++ G++PA Y+R+T+PE+ RYTA V ++
Sbjct: 178 FKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKD 237
Query: 241 VMQAAKDMEKVLDVSIS------QIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSW 294
V QAA DM VL V I + A P + F RHG+ L A SW
Sbjct: 238 VEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSW 297
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
L+DI FY NL Q I I + T +A+EE +K A I A+ T+PGY+VTV
Sbjct: 298 FLLDIAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
F +D IGR IQ +GFF + V++ +G Y+ S H GF+ +Y L FFANFGPN T
Sbjct: 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYN-HLSTH---GFLAIYVLAQFFANFGPNAT 412
Query: 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA--SHDDNKVNATGVTI--ALL 470
TFIVP E+FP R+RST HGIS A GK GAIIG FL+ D K TG+ + L
Sbjct: 413 TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472
Query: 471 ILGGVCFMGFAITYFFTRETMGRSLEENEKE 501
I F+G T ET G+SLEE E
Sbjct: 473 IFALFMFLGILFT-LLIPETKGKSLEELSGE 502
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This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 6e-31
Identities = 105/491 (21%), Positives = 178/491 (36%), Gaps = 65/491 (13%)
Query: 23 IIAGMGLFTDAYDLFCI--PPIMKLLGRIYYSDGADRFQIPNAVVSPML-ALALLGTVIG 79
++A +G F YD I + + + + + + V+S ++ ++ +G +IG
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 80 QLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGD 139
L G+LGD GR++ + +L V+ +L GF+ + L R ++G+G+GG
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKS----FYMLIVGRVIVGLGVGGI 118
Query: 140 YPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199
L +SE A K RGA + FGIL ++ + + + K
Sbjct: 119 SVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYS-------------- 164
Query: 200 HQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAK----DMEKVLDVS 255
WR+ L L +PA + +PES R+ LV + ++ A+ + V DV
Sbjct: 165 --NSDGWRIPLGLQFVPAILLLIGLLFLPESPRW--LVLKGKLEEARAVLAKLRGVSDVD 220
Query: 256 ISQIAEEYPLPPSPPQYPLISKRFLRRHGRD---LFACATSWLLV-----DIVFYSSNLF 307
E+ L S R L I +YS +F
Sbjct: 221 QEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF 280
Query: 308 QSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQA 367
++ + I F+ +F +DR GR +
Sbjct: 281 ETLGLSDSLLVT--------------------IIVGVVNFVFTFIAIFLVDRFGRRPLLL 320
Query: 368 LGFFFMGVIYLAIGVPYSY-KWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR 426
LG M + +L +GV SK + L F G +++ +ELFP
Sbjct: 321 LGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLG 380
Query: 427 FRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486
R I+ A + + F + G L+ G+ + +FF
Sbjct: 381 VRPKAMAIATAANWLANFLIGFLFPIITG-----AIGGYV--FLVFAGLLVLFILFVFFF 433
Query: 487 TRETMGRSLEE 497
ET GR+LEE
Sbjct: 434 VPETKGRTLEE 444
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Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 103/456 (22%), Positives = 165/456 (36%), Gaps = 69/456 (15%)
Query: 5 VLSALDSAKTQYYHFKAIIIAGMGLFTDAYDL----FCIPPIMKLLGRIYYSDGADRFQI 60
V + + Y ++AII++ + + D YDL F P I G +
Sbjct: 2 VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWG------------L 49
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120
+ + + L+G G L FG L D IGRRRV +++L + +L C + T
Sbjct: 50 DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVT--- 106
Query: 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
L RFL G+G+GG P ++SE+A K RG + +F G+ I A+ +A
Sbjct: 107 ---QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFC--GYPIGAAVGGFLA 161
Query: 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI-PAAFTYYWRMTMPESARYTALVEQ 239
I WR + +G I P +PES + LV +
Sbjct: 162 GWLI-----------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDF--LVSK 202
Query: 240 NVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDI 299
+ + + ++ P + + L + G+ WLL
Sbjct: 203 RPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQ-GKTARITVLLWLL--- 258
Query: 300 VFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR 359
Y L ++ + S A A I S I G+ DR
Sbjct: 259 --YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW-----LADR 311
Query: 360 IGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVP 419
+G AL V + +G + + L A+ FF N G + + +
Sbjct: 312 LGPRVT-ALLLLLGAVFAVLVGSTL------FSPTLLLLLGAIAGFFVN-GGQSGLYALM 363
Query: 420 AELFPARFRSTCHGISGAF--GKVGAIIG--TVAFL 451
A +P R+T G+ A G++GAIIG +L
Sbjct: 364 ALFYPTAIRAT--GVGWAIGIGRLGAIIGPILAGYL 397
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-22
Identities = 101/451 (22%), Positives = 162/451 (35%), Gaps = 67/451 (14%)
Query: 69 LALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACG-FSICTTKQCVLGSLGF 127
+++ L+G IG L G L D GR++ +L+++ L + + L
Sbjct: 77 VSIFLVGGFIGALFAGWLSDRFGRKK----SLLIIALLFVIGAILMGLAAFALSVEMLIV 132
Query: 128 FRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEA 187
R LLG+G+G L +SE A K RGA + FGIL + F +
Sbjct: 133 GRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY--------GFGS 184
Query: 188 TTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN-VMQAAK 246
N+ + WR+ L L IPA + +PES R+ LV + V +A K
Sbjct: 185 GKVSLNN--------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRW--LVGKGRVEEARK 234
Query: 247 DMEKVLDVSIS-----------QIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWL 295
+ ++ S I P + + R R W
Sbjct: 235 SLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWF 294
Query: 296 LV-----DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350
I++YS +F++ + + AF V+ T
Sbjct: 295 QQFTGINAIMYYSPTIFEN--------------AGVSTDHAFLVSIIVGAVNFAFT---- 336
Query: 351 FVTVFFIDRIGRVAIQALGFFFM---GVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFA 407
FV +F +DR GR + +G M + +G + SK + + L F
Sbjct: 337 FVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFF 396
Query: 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTI 467
G +++ +E+FP R I+ A + I F + + GV
Sbjct: 397 AMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM------LESIGVGG 450
Query: 468 ALLILGGVCFMGFAITYFFTRETMGRSLEEN 498
+ GG+ +G YFF ET GR+LEE
Sbjct: 451 VFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-19
Identities = 98/464 (21%), Positives = 154/464 (33%), Gaps = 104/464 (22%)
Query: 55 ADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI 114
D +++ + +G ++G VFG L D GR++V L+ ++ +S + FS
Sbjct: 124 EDAWKVDLTQ-----SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP 178
Query: 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174
T V FR L+G+GIGG + + + +EF K R + G++
Sbjct: 179 NYTVFLV------FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLL 232
Query: 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIP--AAFTYYWRMTMPESAR 232
V + D WR + + S+P F W +PES R
Sbjct: 233 PLVAYFI---------PD-------------WRWLQLAVSLPTFLFFLLSW--FVPESPR 268
Query: 233 Y------TALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYP---LISKRFLRRH 283
+ + + + AK K L + ++ E L S QY L LR+
Sbjct: 269 WLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKT 328
Query: 284 GRDLFACATSWLLVDIVFYS-----SNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQ 338
W +Y NL + Y+D
Sbjct: 329 ---TLCLMMLWFTTAFSYYGLVLDLGNLGGN----IYLD--------------------L 361
Query: 339 AIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIG-VPYSYKWSKHTNFGFM 397
I + +P +T+ IDR+GR A GV L + VP +
Sbjct: 362 FISGL-VELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYF--------- 411
Query: 398 FLYALTFFFANFGPN---TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS 454
L FG ++ AEL+P R+ G+ +VG+II
Sbjct: 412 -LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--- 467
Query: 455 HDDNKVNATGVTIAL-LILGGVCFMGFAITYFFTRETMGRSLEE 497
+ L L+L G + I F ET G L E
Sbjct: 468 -------LGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 4e-14
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 31/216 (14%)
Query: 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIG 79
A A +G DA+D F + + ++ A F + + +++ AL+ G
Sbjct: 12 NAFSAAWLGWLLDAFDFFLVA--------LVLAEVAGEFGLTTVDAASLISAALISRWFG 63
Query: 80 QLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGD 139
L+FG GD GRR +++L +LACGF+ + R ++G+G+GG+
Sbjct: 64 ALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIA------RLVIGIGMGGE 117
Query: 140 YPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199
Y SA + E K R + S G + ++ V V ++
Sbjct: 118 YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW-------------- 163
Query: 200 HQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA 235
WR + + +P F + R +PE+ +
Sbjct: 164 ---GDGWRALFFISILPIIFALWLRKNIPEAEDWKE 196
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQL 81
+++ +G F D + P + LL + + +++ LG +G L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAED--------LGLSASQAGLIVSAFSLGYALGSL 52
Query: 82 VFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYP 141
+ G L D GRRRV L L+L L SL F+ L L RFLLG+G G YP
Sbjct: 53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS------SLWLLLVGRFLLGLGGGALYP 106
Query: 142 LSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIF 185
+A +++E+ RG + + G G L + + +
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 58 FQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTT 117
I + +L LG + Q + GRL D GRRRV + L+L L L F+
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS--- 83
Query: 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177
L L R L G+G G +P +A +++++ RG + + + G G +
Sbjct: 84 ---SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL 140
Query: 178 TMAVCKIF 185
+ +F
Sbjct: 141 GGLLASLF 148
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 69 LALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGF-----SICTTKQCVLG 123
A L +G +VFG GD IGR++ + L++M + +L G +I +L
Sbjct: 41 FAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLL 100
Query: 124 SLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183
R + G +GG++ +A ++E+A RG + + G+L ++ + +
Sbjct: 101 LA---RLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Query: 184 IFEATTTRDNDVNKRQHQA--DIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQN 240
+ A + WR+ ++ ++ Y R + E+ + E++
Sbjct: 158 LLG-------------DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH 203
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 35/233 (15%)
Query: 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIG 79
KA A +G D +D I ++ ++ F + + +++ A + G
Sbjct: 20 KAFSAAWLGYLLDGFDFVLITLVL--------TEVQGEFGLTTVQAASLISAAFISRWFG 71
Query: 80 QLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGD 139
L+ G +GD GRR ++++L + +LACGF+ +L R ++G+G+ G+
Sbjct: 72 GLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW------TLFIARLVIGMGMAGE 125
Query: 140 YPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199
Y SAT + E K R + S G + ++ V V ++
Sbjct: 126 YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-------------- 171
Query: 200 HQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252
WR + +G +P F + R +PE+ + + M +L
Sbjct: 172 -----GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA--PVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 99/503 (19%), Positives = 180/503 (35%), Gaps = 50/503 (9%)
Query: 12 AKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLAL 71
Y F ++A +G YD I ++ L ++ + N+++ +A
Sbjct: 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 72 ALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACG------FSICTTKQCVLGSL 125
AL+G +IG + G + GRR +A +L +S+L SI +
Sbjct: 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 126 GFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIF 185
+R + G+G+G LS ++E A RG + S F I+ V V F
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLV----SFNQFAIIFGQLVVYFV-NYF 178
Query: 186 EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAA 245
A + + +N WR + +IPA +PE+ RY + QA
Sbjct: 179 IARSGDASWLN------TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQAE 231
Query: 246 KDMEKVLD-VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSS 304
+ K++ +Q +E S R+ G L +++ ++
Sbjct: 232 GILRKIMGNTLATQALQEIKH----------SLDHGRKTGGKLLMFGVGVIVIGVML--- 278
Query: 305 NLFQSKI-------YHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFI 357
++FQ + Y I T A + V I + + + +
Sbjct: 279 SVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVG---VINLTFTVL-----AIMTV 330
Query: 358 DRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417
D+ GR +Q +G M + ++G + + M Y F ++GP ++
Sbjct: 331 DKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV-AAFAMSWGP--VCWV 387
Query: 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCF 477
+ +E+FP R I+ A + + F + V + I G +
Sbjct: 388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447
Query: 478 MGFAITYFFTRETMGRSLEENEK 500
+ + F ET G++LEE E
Sbjct: 448 LAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 27/203 (13%)
Query: 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAIC 344
R L A ++ L+ +Y + + A + ++F +
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-----------LGLSAAEAGLLLSLFGLG 223
Query: 345 STIPGYFVTVFFIDRIGR-VAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALT 403
I G + DR+GR + +G + L + + S + + L
Sbjct: 224 G-ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL--------LLVALLL 274
Query: 404 FFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNAT 463
F + +EL P R T G+ FG +G +G +
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD------TG 328
Query: 464 GVTIALLILGGVCFMGFAITYFF 486
G LIL + + +
Sbjct: 329 GYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 24 IAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVF 83
+ G+ L D ++F + G + S D IP++ + + LG ++G +
Sbjct: 171 VLGLALMADGVEVFVV-------GFVLPSAEKD-LCIPDSGKGMLGLIVYLGMMVGAFFW 222
Query: 84 GRLGDLIGRRRVYGLAL----MLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGD 139
G L D +GR++ + L SS G+ G F R L G GIGG
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY----------GFFLFCRLLSGFGIGGA 272
Query: 140 YPLSATIMSEFANKMTRGAFIA--AVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK 197
P+ + +EF + RG ++ +F M G GI A++ MA I +
Sbjct: 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG-GIYAAA---MAWAIIPHYGWSFQMGSAY 328
Query: 198 RQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARY 233
+ H +WR+ +++ + P F MPES R+
Sbjct: 329 QFH----SWRVFVIVCAFPCVFAIGALTFMPESPRF 360
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 72 ALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFL 131
+LG + G L+ GRL D IGR+R+ L++ V L FS+ T + SL R L
Sbjct: 59 GILGLLPGALLGGRLADRIGRKRI----LIVSVA--LFGLFSLATAQAWDFPSLLVARLL 112
Query: 132 LGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180
GVG+GG P + SE RG ++ ++ FG +S + +
Sbjct: 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
|
Length = 406 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 78 IGQLVFGRLGDLIGRRRVYGLALMLMVLSSL--AC--GFSICTTKQCVLGSLGFFRFLLG 133
IG +FGR+ D GR++ +++ +M SL AC G+ T L L R G
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPAL--LLLARLFQG 135
Query: 134 VGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDN 193
+ +GG+Y SAT MSE A + +G F A S Q ++ + + V + + T D
Sbjct: 136 LSVGGEYGTSATYMSEVAVEGRKG-FYA---SFQYVTLIGGQLLALLVVVVLQQTLE-DA 190
Query: 194 DVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESA 231
++ + WR+ LG++ A + R + E++
Sbjct: 191 ELR------EWGWRIPFALGAVLAVVALWLRRQLDETS 222
|
Length = 432 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 58 FQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFS 113
P ++V L L LLG GQL++G L D GRR V L L + LSSL S
Sbjct: 35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS 90
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 56 DRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSIC 115
+ + A +L+L LG ++G L+ G L D +GRRR+ L +L+ L
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Query: 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175
+ ++ LLG G+G +P T+ SE A RG + G
Sbjct: 264 SLALLLVAL-----LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP 318
Query: 176 TVTMAV 181
+ +
Sbjct: 319 LLAGLL 324
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 55 ADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGF-S 113
+ + + +L LA L IG+L+ GRL D +GRRR LAL+L++L++L S
Sbjct: 229 QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 114 ICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173
+ + +L +L LLG G G +P ++S+ A K RG + G
Sbjct: 289 LTESSLWLLVAL----LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Query: 174 SS 175
Sbjct: 345 GP 346
|
Length = 346 |
| >gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 58 FQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFS 113
Q + VS L+L L G +GQL++G L D GR+ V L L L SL +
Sbjct: 36 LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91
|
Length = 401 |
| >gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 55/268 (20%), Positives = 113/268 (42%), Gaps = 25/268 (9%)
Query: 1 MALKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQI 60
+ L+ ++ +D K + KAI A +G + +D + LG++++ Q+
Sbjct: 1 ITLRDVTIIDDGKLR----KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQM 56
Query: 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGF--SICTTK 118
A+ + ++ L +G L FG LGD GR+++ + +++M +S+ G S T
Sbjct: 57 IAALAT--FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIG 114
Query: 119 QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVF---SMQGFGILASS 175
L + G +GG+Y ++ ++E++ RG F+ + S+ GF +L +
Sbjct: 115 IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAG 172
Query: 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA 235
V + + EA D WR+ + Y R + E+ +
Sbjct: 173 VVVLISTIVGEANF------------LDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQ 220
Query: 236 LVEQNVMQAAKDMEKVLDVSISQIAEEY 263
V++ + ++ VS +IA ++
Sbjct: 221 HVDKLEQGDREGLQDGPKVSFKEIATKH 248
|
Length = 490 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 36 LFCIP----PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG 91
LF I PI LL +G D VVS ++ A GTV+G +V+G D IG
Sbjct: 240 LFSIFGANWPIFGLLPTYLAGEGFD-----TGVVSNLMTAAAFGTVLGNIVWGLCADRIG 294
Query: 92 RRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYP 141
++ + + L LM + F I +LG+ F VG+GG P
Sbjct: 295 LKKTFSIGL-LMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVP 343
|
Length = 426 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 55 ADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI 114
A + ++ LG +G + L + RRR+ L L ++S+L +
Sbjct: 40 AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP 99
Query: 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS 165
L R L G+ G + ++A + + RG +A VF+
Sbjct: 100 ------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT 144
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.98 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.88 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.84 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.83 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.75 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.68 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.65 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.52 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.51 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.5 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.49 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.46 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.46 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.45 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.45 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.44 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.43 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.42 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.42 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.4 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.39 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.38 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.38 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.38 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.37 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.36 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.34 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.33 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.32 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.31 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.31 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.31 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.3 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.3 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.3 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.29 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.27 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.27 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.26 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.25 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.23 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.19 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.19 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.19 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.19 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.19 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.17 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.16 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.16 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.16 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.14 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.13 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.11 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.09 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.08 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.05 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.04 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.03 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.03 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.02 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.95 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.95 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.94 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.91 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.89 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.89 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.86 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.86 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.83 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.8 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.79 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.77 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.72 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.69 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.69 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.68 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.67 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.64 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.64 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.62 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.62 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.58 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.51 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.47 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.37 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.37 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.22 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.21 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.2 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.18 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.13 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.11 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.1 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.02 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.97 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.79 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.71 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.45 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.39 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.31 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.23 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.18 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.89 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.48 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.37 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.34 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.32 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.3 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.27 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.94 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.81 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.36 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.36 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.25 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.12 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.65 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.28 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.18 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.83 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 86.93 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 83.39 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 83.37 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 82.58 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.26 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 80.76 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 80.09 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=366.20 Aligned_cols=485 Identities=44% Similarity=0.767 Sum_probs=340.7
Q ss_pred hhhcccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccc
Q 009362 7 SALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRL 86 (536)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l 86 (536)
+++|+.+.+++++..+.+++++.+.+++|...++.+.|.+.+++.. ++.+.+..+.+++.+.+.++..++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l 79 (502)
T TIGR00887 3 EEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH---GKGPLPSSVSAAVNGSASIGTLAGQLFFGWL 79 (502)
T ss_pred chhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999988776421 1125667788999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHH
Q 009362 87 GDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSM 166 (536)
Q Consensus 87 ~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 166 (536)
+||+|||+++.++++++.++.++++++++.....+++.++++|++.|++.|...+....++.|++|+++|++++++.+.+
T Consensus 80 ~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~ 159 (502)
T TIGR00887 80 ADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAM 159 (502)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 99999999999999999999999888766211112378999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-cC-Cc--ccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHH
Q 009362 167 QGFGILASSTVTMAVCKIFEATTT-RD-ND--VNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVM 242 (536)
Q Consensus 167 ~~~G~~i~~~~~~~l~~~~~~~~~-~~-~~--~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~ 242 (536)
..+|.++++.++..+...+.+... ++ .. ..-.....+++||++|.+.++++++.++..+++||||+|+..++++++
T Consensus 160 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~ 239 (502)
T TIGR00887 160 QGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE 239 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchH
Confidence 999999999998877543321000 00 00 000000123589999999998888887778899999999855444434
Q ss_pred HHHHhHHHHhcccccc-ccc---cCCCCC-CCCChhhh-hHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhc
Q 009362 243 QAAKDMEKVLDVSISQ-IAE---EYPLPP-SPPQYPLI-SKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYI 316 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (536)
++.+.+.+..+.+.++ .++ .++.++ .+..+..+ +....++..+..+.+...+++....+|+...+.|.++++ .
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~ 318 (502)
T TIGR00887 240 QAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-I 318 (502)
T ss_pred HHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-H
Confidence 4555555544322211 111 000001 11122222 222222333344444455566667788889999999977 8
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHH
Q 009362 317 DGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGF 396 (536)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (536)
|+++.+.+...+............+..++.+++.+++++++||+|||+.+..+..+++++.+++..... .. .....
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~-~~---~~~~~ 394 (502)
T TIGR00887 319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN-HL---STHGF 394 (502)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-hc---chhHH
Confidence 887653321111111112222344455677788899999999999999998888887777666654322 00 01112
Q ss_pred HHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccc----cccccccchhhHHH
Q 009362 397 MFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDN----KVNATGVTIALLIL 472 (536)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~~g~~~~~~~~ 472 (536)
..+..+...++..+..+..+.+.+|.+|++.|+++.|+.+.+++++++++|.+.+.+.+..+ ...+.++..+|+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHH
Confidence 22222333344555667888889999999999999999999999999999999999876331 11134566788888
Q ss_pred HHHHHHHHHHhheeeccccccchhhccc
Q 009362 473 GGVCFMGFAITYFFTRETMGRSLEENEK 500 (536)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (536)
+++++++.++. +++||++++++||.++
T Consensus 475 ~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 475 ALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 88888876655 4789999988876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=334.89 Aligned_cols=477 Identities=52% Similarity=0.874 Sum_probs=394.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.+|++.+.+.+...+.+.++||.++++.+.|.+...|+...+...++++...+.+..+..+|.++|+++.|+++||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 37888999999999999999999999999999999987665555678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccc-chhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQ-CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGIL 172 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 172 (536)
+++...++++.+++++++++...+.+ +...++...|+++|+|.|+-+|...+..+|....++||...+.+.+..++|.+
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 99999999999999988888766555 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 173 ASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 173 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
.|.+++..+...+....+.+ ..-+.-+.-||..+.+++++++..+...+.+|||++|....+++.+.+.++.++..
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~----~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~ 270 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGP----STYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVL 270 (538)
T ss_pred hccHHHHHHHHHHhccCCCC----CCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccc
Confidence 99999888877665421110 00012234599999999999999999999999999986555555555555544443
Q ss_pred ccccccccc-cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHH
Q 009362 253 DVSISQIAE-EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEA 331 (536)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 331 (536)
..+..+.+. ....+.++.....+.+.+.+++-+.++..+..||.....+|+...+...+++. +|+.+.+... ...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~---~~~ 346 (538)
T KOG0252|consen 271 SVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTY---HEL 346 (538)
T ss_pred ccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchH---HHH
Confidence 332211111 22222334445566677766677889999999999999999999999999998 8998886553 444
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCc
Q 009362 332 FKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGP 411 (536)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (536)
...+.....+...+.++|..+...++|++|||+..+.+++++.+..+.++.... +. .+.....++..+..++.+.+.
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~--~~-~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN--QL-ENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc--cc-cccCceeehHHHHHHHHhcCC
Confidence 456667777788888899999999999999999999999999999998887766 22 244566778888889999999
Q ss_pred cccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 412 NTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+.....+.+|.+|++.|++..|+.-..+..|++++...+.++.+.. +....+...++++++.+++++.++.+ ++||++
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk 501 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-YPPNIGVRNVFIILAGCMLLGILFTL-LIPETK 501 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-CCccccchHHHHHHHHHHHHhHheeE-Eeeccc
Confidence 9999999999999999999999999999999999999999996633 23366889999999999999999888 888999
Q ss_pred ccchhhcccccC
Q 009362 492 GRSLEENEKEDD 503 (536)
Q Consensus 492 ~~~~~~~~~~~~ 503 (536)
++++++++.+.+
T Consensus 502 ~~~leei~~e~~ 513 (538)
T KOG0252|consen 502 GKSLEEISNEEE 513 (538)
T ss_pred ccCHHHhcChhh
Confidence 999998855543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=360.88 Aligned_cols=455 Identities=16% Similarity=0.257 Sum_probs=342.8
Q ss_pred hhhhhhhcccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhh
Q 009362 3 LKVLSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLV 82 (536)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~ 82 (536)
++..+.+++.+.++++|..+++++++.+..+++...++.++|.+.+++ +++..+.+++.+++.++.++++++
T Consensus 150 ~~~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~--------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 150 QQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDL--------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888999999999999999999999999999999999 999999999999999999999999
Q ss_pred hcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHH
Q 009362 83 FGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAA 162 (536)
Q Consensus 83 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~ 162 (536)
+|+++||+|||+++++++++.+++++++++++++ +.++++|++.|++.|+..++..+++.|++|+++|++.+++
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~------~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~ 295 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY------GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW 295 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHH
Q 009362 163 VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVM 242 (536)
Q Consensus 163 ~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~ 242 (536)
..++..+|.++++.++..+....+.. ..........+||+.+++.+++.++.++..+++||||+|+. .+++.+
T Consensus 296 ~~~~~~iG~ila~~la~~il~~~G~~------~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~-~~gr~~ 368 (742)
T TIGR01299 296 LCMFWMIGGIYAAAMAWAIIPHYGWS------FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL-ENGKHD 368 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch------hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HCCCHH
Confidence 99999999999999988776433210 00000113357999999998888888888889999999983 455667
Q ss_pred HHHHhHHHHhcccccc------------cccc--C----CCCCCCC----------------ChhhhhHHHhhhhhhhHH
Q 009362 243 QAAKDMEKVLDVSISQ------------IAEE--Y----PLPPSPP----------------QYPLISKRFLRRHGRDLF 288 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~------------~~~~--~----~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 288 (536)
++.+.+++..+.+... .+.. . +.+++.. .|..+.+.+.+...+..+
T Consensus 369 eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl 448 (742)
T TIGR01299 369 EAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITI 448 (742)
T ss_pred HHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHH
Confidence 7777776665443210 0000 0 0000000 011222333334556678
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhhh---------------------cCCCCCCc-------------cc---------
Q 009362 289 ACATSWLLVDIVFYSSNLFQSKIYHQY---------------------IDGNGHDQ-------------TR--------- 325 (536)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~g~~~~~~-------------~~--------- 325 (536)
.+.+.+++..+.+|++..|.|.++... ++++..+. ++
T Consensus 449 ~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (742)
T TIGR01299 449 KLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFED 528 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccc
Confidence 888999999999999999999886541 00111000 00
Q ss_pred -------------------------------h--h--------------------------hHHHHHHHHHHHHHHHHhh
Q 009362 326 -------------------------------S--A--------------------------FEEAFKVARHQAIFAICST 346 (536)
Q Consensus 326 -------------------------------~--~--------------------------~~~~~~~~~~~~~~~~~~~ 346 (536)
+ . .............+..++.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~ 608 (742)
T TIGR01299 529 SLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAV 608 (742)
T ss_pred ccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHH
Confidence 0 0 0000112344466677889
Q ss_pred hhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc
Q 009362 347 IPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR 426 (536)
Q Consensus 347 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 426 (536)
+++.+++++++||+|||+++.++.++.+++.+++.+... ....+++.+ +.+++..+..+..+++++|++|++
T Consensus 609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s-------~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~ 680 (742)
T TIGR01299 609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS-------ESAMIALLC-LFGGLSIAAWNALDVLTVELYPSD 680 (742)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999999999998888877765543 122222222 333333344577889999999999
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccc
Q 009362 427 FRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRS 494 (536)
Q Consensus 427 ~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (536)
.|++++|+.++.+.+|++++|++.+.+.+. +...+|++++++.+++.++.+ ++||++++.
T Consensus 681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-------~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 681 KRATAFGFLNALCKAAAVLGILIFGSFVGI-------TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 999999999999999999999999987532 345688888888888777777 669988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=332.12 Aligned_cols=448 Identities=21% Similarity=0.246 Sum_probs=349.6
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCC--CChh----hhHHHHHHHHHHHHHhhhhhccccc
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQ--IPNA----VVSPMLALALLGTVIGQLVFGRLGD 88 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~----~~g~~~s~~~~~~~i~~~~~g~l~d 88 (536)
+++........+++.+-.+|....+++..+.+.+-..+...++++ +++. ..+.+.+++.+|.++|+++.+.++|
T Consensus 6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666888999888888766555444333333334 3333 4578899999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHH
Q 009362 89 LIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQG 168 (536)
Q Consensus 89 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 168 (536)
|+|||..+.++.++..++.+++.++... .+..+++++|++.|+..|......+.|+.|..|++.||....+.+.+..
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~---~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~ 162 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSA---PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVV 162 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHH
Confidence 9999999999999999888887766442 1248999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhH
Q 009362 169 FGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDM 248 (536)
Q Consensus 169 ~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~ 248 (536)
+|.+++..++..-. + .....|++.+.+..+++++.++...++||||+|+..++++++++++.+
T Consensus 163 ~g~ll~~~~~l~~i--l---------------Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl 225 (485)
T KOG0569|consen 163 IGILLGQVLGLPSL--L---------------GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKAL 225 (485)
T ss_pred HHHHHHHHHccHHh--c---------------CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHH
Confidence 99999987775432 1 345679999999999999999999999999999977788999999999
Q ss_pred HHHhccccc--ccc-------ccCCCC-CCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCC
Q 009362 249 EKVLDVSIS--QIA-------EEYPLP-PSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDG 318 (536)
Q Consensus 249 ~~~~~~~~~--~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (536)
+..++.+.+ +.+ +.+..+ ++.+.++.++++..|+ .....+.+.......+.+....|...++.+ .|+
T Consensus 226 ~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~--~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~ 302 (485)
T KOG0569|consen 226 KFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRR--PLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGF 302 (485)
T ss_pred HHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhH--HHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCC
Confidence 998877531 111 111111 2223344455444444 234445555556667778888888889888 888
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC--CchHHH
Q 009362 319 NGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK--HTNFGF 396 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 396 (536)
+.. .+........+..++.++++.+++||+|||++++.+..++.+..+++.......... ...+..
T Consensus 303 ~~~------------~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~ 370 (485)
T KOG0569|consen 303 TPE------------EAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC 370 (485)
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 877 455677777788888999999999999999999999999988887776654421111 111233
Q ss_pred HHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHH
Q 009362 397 MFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVC 476 (536)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 476 (536)
+....++...++.|.+|+.+.+.+|++|++.|..++++....+++..++....+..+.+. +|. ..|+++.+.+
T Consensus 371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~------~g~-~~filF~i~~ 443 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV------IGP-YVFILFVIPL 443 (485)
T ss_pred HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcc-hhhHHHHHHH
Confidence 556666677888899999999999999999999999999999999999999999999654 443 7899999999
Q ss_pred HHHHHHhheeeccccccchhhcccccCc
Q 009362 477 FMGFAITYFFTRETMGRSLEENEKEDDS 504 (536)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (536)
+++.++.++.+||||+|+..|+.++.++
T Consensus 444 ~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 444 AIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 9999999999999999998887766543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=341.79 Aligned_cols=454 Identities=18% Similarity=0.237 Sum_probs=317.5
Q ss_pred CcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch
Q 009362 13 KTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR 92 (536)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 92 (536)
...+++.+.+.++.++.+..+++...+++..|.+.+++.+...++.+++..+.+++.+++.++.+++++++|+++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Gr 84 (479)
T PRK10077 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (479)
T ss_pred ccchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566788888888999999999999999999999998766666779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhc------ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHH
Q 009362 93 RRVYGLALMLMVLSSLACGFSIC------TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSM 166 (536)
Q Consensus 93 r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 166 (536)
|++++++.++++++.++++++.- ......++.++++|+++|++.|...+...++++|++|+++|++++++.+.+
T Consensus 85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 164 (479)
T PRK10077 85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA 164 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence 99999999999999888776310 000112367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHH
Q 009362 167 QGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAK 246 (536)
Q Consensus 167 ~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~ 246 (536)
..+|.++++.+++.+...... ...+..+||+.|++.+++.++..+..+++||+|+++.. +++.+++.+
T Consensus 165 ~~~G~~~~~~~~~~~~~~~~~-----------~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~-~~~~~~~~~ 232 (479)
T PRK10077 165 IIFGQLVVYFVNYFIARSGDA-----------SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMS-RGKQEQAEG 232 (479)
T ss_pred HHHHHHHHHHHHHHHhccCcc-----------cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH-cCCHHHHHH
Confidence 999999998887766421110 01245689999999888877776667789999987532 333333333
Q ss_pred hHHHHhccccccccccCCCCCCCCChhhhhHHHh--hh---hhh--hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCC
Q 009362 247 DMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFL--RR---HGR--DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGN 319 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (536)
..++..+.+..+.... ........... +. ... .........+.....++....+.|.+.++ .|.+
T Consensus 233 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~ 304 (479)
T PRK10077 233 ILRKIMGNTLATQALQ-------EIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGAS 304 (479)
T ss_pred HHHHHcCChhHHHHHH-------HHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCC
Confidence 3332221110000000 00000000000 00 000 01111111222223334455677877776 7776
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 009362 320 GHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFL 399 (536)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (536)
.. ..........+..+++.+++++++||+|||+++..+.++.+++.+++...... . .........
T Consensus 305 ~~------------~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--~-~~~~~~~~~ 369 (479)
T PRK10077 305 TD------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--Q-APGIVALLS 369 (479)
T ss_pred Cc------------hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--C-cccHHHHHH
Confidence 55 23344555667778889999999999999999999999888887776543220 0 111222222
Q ss_pred HHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHH
Q 009362 400 YALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMG 479 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 479 (536)
..++.........+..+.+++|.+|++.|++++|+.+..++++.++++.+.+.+.+..-..+..++...|++.+++++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 23333333334457788999999999999999999999999999999888876642111123567788899988888888
Q ss_pred HHHhheeeccccccchhhcccc
Q 009362 480 FAITYFFTRETMGRSLEENEKE 501 (536)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~ 501 (536)
.++.+++.||+|+++.+|.+++
T Consensus 450 ~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 450 ALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHhccccCCCCCHHHHHHH
Confidence 8888778899988877665444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=305.53 Aligned_cols=408 Identities=15% Similarity=0.178 Sum_probs=327.5
Q ss_pred cCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccc
Q 009362 12 AKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG 91 (536)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 91 (536)
+..+++|+.++...++++...++.+-..+.+.|.+.++. ++|.+|+|++.+++++.|.++-++.|.++||.+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~--------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~n 92 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG--------GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSN 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 345677899999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 92 RRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 92 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
.|+.+.+++++.++.+++++++++. +.+.++-++.|..+|...|.+...++.|+|+++||+..++++.+.++|.
T Consensus 93 pr~fm~~gLilsai~nil~Gfs~s~------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGG 166 (448)
T COG2271 93 PRYFMAFGLILSAIVNILFGFSPSL------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGG 166 (448)
T ss_pred CceeehHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhccc
Confidence 9999999999999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhH
Q 009362 172 LASSTVT--MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDM 248 (536)
Q Consensus 172 ~i~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~ 248 (536)
.+.+++. +++. .+.+||..|++.++++++. ++.++..+|+|+..-. ...++..++
T Consensus 167 al~~~~~~la~~~-------------------~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL--P~ie~~~~d- 224 (448)
T COG2271 167 ALAPLVALLAFFA-------------------FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL--PPIEEYRGD- 224 (448)
T ss_pred chHHHHHHHHHHH-------------------hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC--CCHHHhhcC-
Confidence 9999998 6662 4458999999988888775 5566778888874211 111111111
Q ss_pred HHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 249 EKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
.. |..++++..+..+.++.+.+...+. +.+|.+++..+.....-+++..|.|.|+.+..|++..
T Consensus 225 ------~~-e~~~~~~~~~~ls~~~i~~~YVL~N--k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~------- 288 (448)
T COG2271 225 ------PL-EIYEEEKENEGLTAWQIFVKYVLKN--KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV------- 288 (448)
T ss_pred ------ch-hhhhhhccCCCccHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH-------
Confidence 00 1101111111144566666666655 6789999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh--chhHHHHHhH-HHHHHHHHHhhcccccccCCCchHHHHHHHHHHHH
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFIDRI--GRVAIQALGF-FFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFF 405 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (536)
.+.......-.++++|++++|+++||+ |||....+.+ +...++++.+..... .++.+..++.+..+
T Consensus 289 -----~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~------~~~~l~~~~l~~iG 357 (448)
T COG2271 289 -----KANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN------GSYLLDAILLFIIG 357 (448)
T ss_pred -----HHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC------ccHHHHHHHHHHHH
Confidence 444677778889999999999999996 6666554443 333444444333332 24555556666666
Q ss_pred HHhcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 406 FANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+.-.++.-+.-..+.|..|++..|++.|+...++++ |.+.+....|++.| .+||...|++..+.++++.++..
T Consensus 358 f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d------~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 358 FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD------TWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred HHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe------cCCCcchHHHHHHHHHHHHHHHH
Confidence 666666666666789999999999999999999999 88899999998854 57999999998888888877776
Q ss_pred eeec
Q 009362 485 FFTR 488 (536)
Q Consensus 485 ~~~~ 488 (536)
....
T Consensus 432 ~~~~ 435 (448)
T COG2271 432 PVWN 435 (448)
T ss_pred HHHh
Confidence 4443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=325.83 Aligned_cols=417 Identities=17% Similarity=0.250 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCCh--hhhHH--HHHHHHHHHHHhhhhhcccccccchhH
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPN--AVVSP--MLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++.+..++++.+++++|...++...|.+.++++.. .++ +..+. +.++.++++.+++++.|+++||+|||+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~ 88 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPG------ADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQK 88 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 45677778899999999999999999999998321 111 11222 257888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchh--hHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVL--GSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGIL 172 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 172 (536)
++.+++++++++++++++++++...+.+ .+++++|+++|++.|+.++...+++.|++|+++||++.++...+..+|.+
T Consensus 89 ~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 89 ILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999997110000 14899999999999999999999999999999999999999999889998
Q ss_pred HHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 173 ASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 173 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
+++.+...+.....+. ....+|||++|++.+++.++.+++...+||+|++...+ ++.++..+
T Consensus 169 lg~~~~~~~~~~~~~~-----------~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~-~~~~~~~~------ 230 (490)
T PRK10642 169 LGAGVVVLISTIVGEA-----------NFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV-DKLEQGDR------ 230 (490)
T ss_pred HHHHHHHHHHHhcCHH-----------HhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH-Hhhhhhcc------
Confidence 8887776654322110 02357999999998777666666667789999863111 11000000
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
+. ..++++.++... .+++++.+.......++....+++...|.|.++++..|++..
T Consensus 231 ----~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~----------- 286 (490)
T PRK10642 231 ----EG-----LQDGPKVSFKEI----ATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSED----------- 286 (490)
T ss_pred ----cc-----ccccccCCHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----------
Confidence 00 000111122111 111223333333344455677888889999999876777654
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHH-hhcccccccCCCchHHHHHHHHHHHHHHhcCc
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLA-IGVPYSYKWSKHTNFGFMFLYALTFFFANFGP 411 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (536)
.+........++.+++.++.|+++||+|||+.+..+.++..++... +..... .....+.+..+..++.....
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~ 359 (490)
T PRK10642 287 -HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS------NVIGLIFAGLLMLAVILNCF 359 (490)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHH
Confidence 2334555666778888899999999999999887776543332222 211111 11222222222222211112
Q ss_pred cccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 412 NTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
.+....+..|.+|++.|+++.|+......+++.++|.+.+++.+..+ ++..++++..+.++++.+..+ +.||++
T Consensus 360 ~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~-----~~~~~~~~~~~~~~i~~~~~~-~~pes~ 433 (490)
T PRK10642 360 TGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ-----NLMMPAYYLMVVAVIGLITGV-TMKETA 433 (490)
T ss_pred HHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 23445666799999999999998777778888999999999865322 345555555666666666555 669987
Q ss_pred ccchh
Q 009362 492 GRSLE 496 (536)
Q Consensus 492 ~~~~~ 496 (536)
++..+
T Consensus 434 ~~~~~ 438 (490)
T PRK10642 434 NRPLK 438 (490)
T ss_pred CCCCC
Confidence 76554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=307.72 Aligned_cols=404 Identities=13% Similarity=0.116 Sum_probs=286.4
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++.+|..+.+++++++.+++|+...+...|.+.+|+ |++..+.|++.+++.+++++++++.|+++||+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~ 74 (412)
T TIGR02332 3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL--------GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR 74 (412)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc--------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH
Confidence 346788888999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
++..++++++++++++++++++ +.+++.|++.|++.+...+....++.|++|+++|++++++++.+.++|.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 148 (412)
T TIGR02332 75 WIAGIMVLWGIASTATMFATGP------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG 148 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
+++++++..... ..+..|||+.|++.+++.++. .+..+++||+|+.. +.-.+++ ++...+..+
T Consensus 149 ~~~~~~l~~~~~-------------~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~-~~~~~~~~~ 212 (412)
T TIGR02332 149 LILSGYILALDG-------------LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEED-KKALKEMID 212 (412)
T ss_pred HHHHHHHHhCCC-------------CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHH-HHHHHHHHH
Confidence 999998852110 013468999999987777664 44556789988531 0000111 111111111
Q ss_pred cccccccccCCC-CCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh-cCCCCCCccchhhHHH
Q 009362 254 VSISQIAEEYPL-PPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY-IDGNGHDQTRSAFEEA 331 (536)
Q Consensus 254 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 331 (536)
.+..+.++.++. ++++..+....+. ...+.++......++.....++...|.|.++++. .|.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~---------- 279 (412)
T TIGR02332 213 NDQLTLEQPEGAFAHAAMPQRSMLRE---IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI---------- 279 (412)
T ss_pred hccccccccccccccccccHHHHHHH---hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----------
Confidence 111000000000 0011111111111 1123466667777777788888999999999872 244443
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH-HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcC
Q 009362 332 FKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI-QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFG 410 (536)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (536)
.+........++.+++.++.++++||++||+. ......+..+.+ ++..... .......... ....+...
T Consensus 280 --~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~-~~~~g~~~ 349 (412)
T TIGR02332 280 --MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASATD------HNLIQLLGII-MASMGSFS 349 (412)
T ss_pred --HhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhcC------CHHHHHHHHH-HHHHHhhh
Confidence 44456777888899999999999999997764 333333333333 2222111 1111111111 11222222
Q ss_pred ccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHH
Q 009362 411 PNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVC 476 (536)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 476 (536)
..+..+....|.+|++.|+++.|+.+..+++|++++|.+.|.+.+..+ +|+..+++.+++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g-----~~~~~~~~~~~~~ 410 (412)
T TIGR02332 350 AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG-----SFNSGLWFVAALL 410 (412)
T ss_pred hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC-----CCchhHHHHHHHH
Confidence 223444555788999999999999999999999999999999966443 4777877666544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=316.27 Aligned_cols=436 Identities=22% Similarity=0.306 Sum_probs=308.8
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
.+....++.++.+...++...+++..+.+..++..+.+.+.+.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 105 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence 34444455566678888999999999999888844333333466999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
++.+++.++.+++.+..+. .+++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 182 (481)
T TIGR00879 106 IIALLFVIGAILMGLAAFA---LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGF 182 (481)
T ss_pred HHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999998665442 0125899999999999999999999999999999999999999999999999999999
Q ss_pred H---HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcc
Q 009362 178 T---MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDV 254 (536)
Q Consensus 178 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~ 254 (536)
+ ... ....+||+.|++.++..++.++..+++||+|++... +++.++..+...+....
T Consensus 183 ~~~~~~~-------------------~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR00879 183 GSGKVSL-------------------NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVG-KGRVEEARKSLARLRGT 242 (481)
T ss_pred HHHhhcC-------------------CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-cCChHHHHHHHHHHhCC
Confidence 8 332 355689999999777777776777789999876422 22222222222221111
Q ss_pred cccccc-----------ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCc
Q 009362 255 SISQIA-----------EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQ 323 (536)
Q Consensus 255 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 323 (536)
+.++.+ ...+.+..+..+..+.+...+...+.++...+..+...........+.|.++++ .|++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-- 319 (481)
T TIGR00879 243 SGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTD-- 319 (481)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCch--
Confidence 100000 000000001112222111111112334444444444444445566777777766 787765
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC---CchHHHHHHH
Q 009362 324 TRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK---HTNFGFMFLY 400 (536)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 400 (536)
.+........++.+++.++++++.||++||+.+..+..+.+++++++.......... ......+...
T Consensus 320 ----------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (481)
T TIGR00879 320 ----------HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI 389 (481)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHH
Confidence 444666777778888999999999999999999888887777766665321100010 0123334444
Q ss_pred HHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHH
Q 009362 401 ALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGF 480 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 480 (536)
.++..+...+..+....+..|.+|++.|++++|+.+...++|++++|.+.+.+.+ ..++...|++.+++++++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 390 LLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE------SIGVGGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCccceehhHHHHHHHHH
Confidence 4445555555667778888999999999999999999999999999999999854 4578889999999999888
Q ss_pred HHhheeeccccccch
Q 009362 481 AITYFFTRETMGRSL 495 (536)
Q Consensus 481 ~~~~~~~~~~~~~~~ 495 (536)
++.+++.||+++++.
T Consensus 464 i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 464 IFVYFFLPETKGRTL 478 (481)
T ss_pred HHHheecccCCCCCh
Confidence 888877888776544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=282.75 Aligned_cols=377 Identities=12% Similarity=0.106 Sum_probs=304.1
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.++..|..++...++.|..+.+.+....++|++.+|+ |+|..+.|++.++|.++.++++++...+.||+.||
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl--------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr 78 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADL--------GVSEGAAGQLITAYALGVALGAPLLALLTGRLERR 78 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 3445677888888899999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
++++..+.++.++++++++++|| +.++++|++.|++.|.+++...++..+..||++|++++++...+..++.++
T Consensus 79 ~lLl~~l~lFi~~n~l~alAp~f------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~ 152 (394)
T COG2814 79 RLLLGLLALFIVSNLLSALAPSF------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL 152 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHH-HHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTY-YWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
|.+++.++- +..|||..|++.+.++++.+ ..+..+| |+.. ++....+..+.
T Consensus 153 GvPLGt~ig-------------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~~~~~~~~~----- 204 (394)
T COG2814 153 GVPLGTFLG-------------------QLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SGSLPGPLRTL----- 204 (394)
T ss_pred hccHHHHHH-------------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CCCCCcchhHH-----
Confidence 999999994 55689999999888888764 4556778 2211 01111110000
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
.... +++..+......++...+.|...+|+..++++..|++..
T Consensus 205 ------------------------~~~l--~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~----------- 247 (394)
T COG2814 205 ------------------------LRLL--RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVS----------- 247 (394)
T ss_pred ------------------------HHHh--cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHh-----------
Confidence 0011 113466666677777788889999999999998898877
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcc
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPN 412 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (536)
........++++.++|+.++|++.|| +.|+.+.....+..+.++.+.+... ..+......+..++......
T Consensus 248 -~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~-------~~~~~~~~~~~wg~a~~~~~ 318 (394)
T COG2814 248 -AVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA-------SPALALALLFLWGFAFSPAL 318 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHhhhhh
Confidence 45578888999999999999999999 8888888888888888777766655 12222222222333333222
Q ss_pred ccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhe
Q 009362 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYF 485 (536)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 485 (536)
.......++.. ++.++.+.+++....|+|..+|..++|.+.| ++|+....++.+.+.+++.++.+.
T Consensus 319 ~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~------~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 319 QGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLD------ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHHH
Confidence 33334444533 4779999999999999999999999999954 568899999999888888887763
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=313.01 Aligned_cols=414 Identities=12% Similarity=0.074 Sum_probs=291.1
Q ss_pred ccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc
Q 009362 11 SAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI 90 (536)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~ 90 (536)
++...+..+..+.+++++++..+.++..+++..|.+.+|+ |++..+.|++.+++.+++.+++++.|+++||+
T Consensus 20 ~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~ 91 (467)
T PRK09556 20 RKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTY--------GLSTTELGMIGLGFSITYGVGKTLVGYYADGK 91 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc
Confidence 3344555677788888899999999999999999999999 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhh-----hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHH
Q 009362 91 GRRRVYGLALMLMVLSSLACGF-----SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS 165 (536)
Q Consensus 91 Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 165 (536)
|||+++.+++++++++.++.++ ++++ +.+++.|++.|++.+...+...++++||+|+++||+++++...
T Consensus 92 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~ 165 (467)
T PRK09556 92 NTKQFLPFLLILSAICMLGFGASLGSGSVSL------GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNI 165 (467)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcccchH------HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeec
Confidence 9999999988888887776665 4665 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHH
Q 009362 166 MQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQA 244 (536)
Q Consensus 166 ~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~ 244 (536)
+.++|.++++++..++.+.. ...+||..|.+.+++.++. ++.+++.+++|+.. ...+.++.
T Consensus 166 ~~~lG~~l~~~i~~~~~~~~----------------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~--~~~~~~~~ 227 (467)
T PRK09556 166 SHNLGGAGAGGVALWGANYF----------------FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL--GWGKAEEI 227 (467)
T ss_pred ccchhhhHHHHHHHHHHHhh----------------ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc--CCCChhhc
Confidence 99999999999887664321 1125999998877766654 44445567666421 01111110
Q ss_pred HHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCcc
Q 009362 245 AKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQT 324 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 324 (536)
. .+...+ ++....+++....+.+.+... +.+.++...+..++.....++...|.|.|+++..|++..
T Consensus 228 ---~----~~~~~~-~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~--- 294 (467)
T PRK09556 228 ---F----GEPISE-EDKETESTDMTKWQIFVEYVL--KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKE--- 294 (467)
T ss_pred ---c----cCccch-hhhccccccCcHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH---
Confidence 0 000000 000000001111111111112 224567777777777777788899999999887888876
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHH
Q 009362 325 RSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTF 404 (536)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (536)
.+........++.+++.+++|+++||++||+.+.....+..++...+..... . ......+..+..
T Consensus 295 ---------~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~ 359 (467)
T PRK09556 295 ---------DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-----T-SEYMYLASLFAL 359 (467)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-----C-cHHHHHHHHHHH
Confidence 3445566677788999999999999999988766554443333222222111 1 122222222222
Q ss_pred HHHhcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhcc-c-c----cccccccchhhHHHHHHHH
Q 009362 405 FFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHD-D-N----KVNATGVTIALLILGGVCF 477 (536)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~-~-~----~~~~~g~~~~~~~~~~~~~ 477 (536)
++...+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|.+.|. . + .....+|+..|++.+++++
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 3222222222235567999999999999999999997 779999999999871 1 0 0113478999999888888
Q ss_pred HHHHHhh
Q 009362 478 MGFAITY 484 (536)
Q Consensus 478 ~~~~~~~ 484 (536)
++.+..+
T Consensus 440 ~~~~~~~ 446 (467)
T PRK09556 440 GCICLMA 446 (467)
T ss_pred HHHHHHH
Confidence 8766665
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=300.45 Aligned_cols=384 Identities=19% Similarity=0.192 Sum_probs=290.5
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
..+++|..+.++++..+.++++....+...|.+.+++ +.++.+.|++.+++.++..+++++.|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 80 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEF--------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK 80 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3457888999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
+++..+.++.+++.+++.+++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 154 (406)
T PRK11551 81 RILIVSVALFGLFSLATAQAWDF------PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL 154 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
++.++..+ .+..+||+.|++.++..++. .+...++||+|++.. +++.++..+..
T Consensus 155 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~---- 209 (406)
T PRK11551 155 ASVIGVLA-------------------AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ--AAGAGKQRAPV---- 209 (406)
T ss_pred HHHHHHHH-------------------ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHh--ccCcchhhhhh----
Confidence 99998776 35568999999877665554 344456888876421 11100000000
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
.+...+. ...+..+......+......+....|.|.++++ .|+++.+
T Consensus 210 -------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~---------- 256 (406)
T PRK11551 210 -------------------LRALFGE---GRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQ---------- 256 (406)
T ss_pred -------------------HHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhh----------
Confidence 0000000 001112223333344445566777788999887 7887764
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcc
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPN 412 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (536)
.+.......++.+++.++.+++.||+|||+.+..+.....++++.+..... ...+.+..+..++...+..
T Consensus 257 --~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~ 326 (406)
T PRK11551 257 --AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS--------FAGMLLAGFAAGLFVVGGQ 326 (406)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHhHH
Confidence 335666677888999999999999999999888766666665554443332 2223333333444444455
Q ss_pred ccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+..+++..|.+|++.|+++.|+.+....+|..++|.+.|.+.+..+ ++...++....+.+++.++.+
T Consensus 327 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 327 SVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR-----STVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC-----chHHHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999999999999999999999999965322 455556666655655555555
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=302.54 Aligned_cols=409 Identities=14% Similarity=0.123 Sum_probs=289.7
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.+++++.......++++..+++...++...|.+.+++ |+|..+.|++.+++.+++.+++++.|+++||+|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r 88 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADL--------GLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR 88 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc
Confidence 3445667777777888888899889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
+++.++.++.+++.+++++++++ +.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 162 (434)
T PRK11663 89 YFMGIGLIATGIINILFGFSSSL------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGAL 162 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
++.+++.+. +..+||+.|++.+++.++. ++..++++|+|++...++.++.+ .+. +
T Consensus 163 ~~~~~~~l~-------------------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~-~--- 218 (434)
T PRK11663 163 IPLVVGAIA-------------------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-HDA-L--- 218 (434)
T ss_pred HHHHHHHHH-------------------HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-ccc-c---
Confidence 999999884 4468999999877766554 44455678877542100000000 000 0
Q ss_pred ccccccccccCCCCCCCCChhh-hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPL-ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEA 331 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 331 (536)
+..+ +.++++.+++. ++....+ .+.++.+.+..++.....++...|.|.++.+..|++..
T Consensus 219 -----~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~---------- 279 (434)
T PRK11663 219 -----ELAQ--QQEGAGLSRKEILTKYVLL--NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLV---------- 279 (434)
T ss_pred -----ccch--hccccCCChhhhHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH----------
Confidence 0000 00000111111 1111111 23455555556666666777888999999776888876
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhh--chhHHH-HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHh
Q 009362 332 FKVARHQAIFAICSTIPGYFVTVFFIDRI--GRVAIQ-ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFAN 408 (536)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (536)
.+........++.+++.+++|++.||+ ++|+.. ........+....+..... . .........+..+++.
T Consensus 280 --~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~g~~~ 351 (434)
T PRK11663 280 --TANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-----A-SYVMQAACFFTIGFFV 351 (434)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc-----c-cHHHHHHHHHHHHHHH
Confidence 334566677788899999999999998 333322 2211111211111111111 0 1122222222222222
Q ss_pred cCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeec
Q 009362 409 FGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 409 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
.+..........|.+|++.|++++|+.++..++|.+++|.+.|++.+ ..||..+|++.+++++++.+..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE------IWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH------hcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222334566899999999999999999999999999999999954 568899999999888888777664555
Q ss_pred ccccc
Q 009362 489 ETMGR 493 (536)
Q Consensus 489 ~~~~~ 493 (536)
+++++
T Consensus 426 ~~~~~ 430 (434)
T PRK11663 426 AQAPR 430 (434)
T ss_pred hhchh
Confidence 44443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=263.10 Aligned_cols=434 Identities=20% Similarity=0.351 Sum_probs=333.9
Q ss_pred hhhhcccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcc
Q 009362 6 LSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGR 85 (536)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~ 85 (536)
.++++..++.+++|........+...........+.+.|.+.+.+ +.+..|..+++...+.|..+++..+|.
T Consensus 64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w--------~~s~~q~~llt~~v~~gmllga~~w~l 135 (528)
T KOG0253|consen 64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVW--------GPSEGQAPLLTLSVFLGMLVGAMVWGL 135 (528)
T ss_pred hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------chhhhhhhHHHHHHHhhhhhhhhhhhe
Confidence 445556678889999999999999888888888888999999999 999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHH
Q 009362 86 LGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS 165 (536)
Q Consensus 86 l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 165 (536)
++|++|||+.+.+..+..++..++.+.++|+ ..+++.|.+.|+|.|+ .|...++-.|..|..+|..-+-+. .
T Consensus 136 ~~d~~grr~~f~~T~l~t~v~~~is~~spnf------~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~ 207 (528)
T KOG0253|consen 136 SADTIGRRKGFNLTFLVTGVFGVISGASPNF------ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-F 207 (528)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHhhcCCCCe------ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-H
Confidence 9999999999999999999999999999998 9999999999999998 899999999999999998888777 8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHH
Q 009362 166 MQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAA 245 (536)
Q Consensus 166 ~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~ 245 (536)
.+.+|.++...++...+ .+.||||......++..+.....+++|||||+.. .+++++++.
T Consensus 208 ~waig~v~ea~law~vm-------------------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~-~~G~~~kAl 267 (528)
T KOG0253|consen 208 FWAIGQVFEALLAWGVM-------------------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL-AKGDDYKAL 267 (528)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh-hcCChHHHH
Confidence 99999999999998885 4558999999888888888888899999999974 466777777
Q ss_pred HhHHHHhcccccc-------------ccccCC----------CCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 009362 246 KDMEKVLDVSISQ-------------IAEEYP----------LPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFY 302 (536)
Q Consensus 246 ~~~~~~~~~~~~~-------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (536)
+.++++.+.|..+ .++++. ++.......++.+. .| +..+.+...++...+.+|
T Consensus 268 etL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~-lr---kttlllw~iwfgnafsyy 343 (528)
T KOG0253|consen 268 ETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPK-LR---KTTLLLWRIWFGNAFSYY 343 (528)
T ss_pred HHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChH-HH---HHHHHHHHHHHhhHHHHH
Confidence 7777766554211 111100 00111112222222 22 345667777888888888
Q ss_pred hhhhhhhHHhhhhc--CCCCCCccchh-----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHH
Q 009362 303 SSNLFQSKIYHQYI--DGNGHDQTRSA-----FEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGV 375 (536)
Q Consensus 303 ~~~~~~~~~~~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 375 (536)
+........++... +......+... ..........-..+..+...+|.++.++++||+|||+.+....++.++
T Consensus 344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~i 423 (528)
T KOG0253|consen 344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGI 423 (528)
T ss_pred HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88877777665421 11111000000 011122333456677788999999999999999999999999999999
Q ss_pred HHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 376 IYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
+.+.+..... .....++.+..-.+... .+.+.|.|..|++|+..|+++.|.+...+.+|+++.|++. ...
T Consensus 424 flfll~~c~~-------rn~~tvllf~arafisg-~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~- 493 (528)
T KOG0253|consen 424 FLFLLTTCKT-------RNAYTVLLFTARAFISG-AFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA- 493 (528)
T ss_pred HHHHHHHhcC-------cchhHHHHHHHHHHHhc-hheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh-
Confidence 8887766555 22333333333334443 4478899999999999999999999999999999999998 332
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHhheeeccccccch
Q 009362 456 DDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSL 495 (536)
Q Consensus 456 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (536)
......+..+++.+++++.+...++--|+|+|..
T Consensus 494 ------e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 494 ------ELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ------ccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 2244567888899999999988866668888753
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=297.93 Aligned_cols=370 Identities=17% Similarity=0.201 Sum_probs=266.8
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++++++.+..+.++++.++++.....+..|.+.+++ |+++.+.+++.+++.+++.+++++.|+++||+|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~ 84 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADL--------GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP 84 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 356677788888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
++.++.++.+++.+++++++++ +.++++|++.|++.|...+....++.|++|+++|+++.++...+..+|.+++
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 158 (426)
T PRK12307 85 LMMWSIVAYSVGTGLSGLASGV------IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence 9999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDV 254 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~ 254 (536)
+.+.+.+ .+..+||+.|++..+..++.+......||++++. +++.++.
T Consensus 159 ~~l~~~l-------------------~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~---------- 206 (426)
T PRK12307 159 AYFMPSF-------------------AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE---EAKLSGK---------- 206 (426)
T ss_pred HHHHHHH-------------------cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH---Hhhhhcc----------
Confidence 9888877 3456899999986554444333333456654321 0000000
Q ss_pred ccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHH
Q 009362 255 SISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKV 334 (536)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 334 (536)
+ + +. + ...+......+....++..+.........+......+....+.|.++++ .|+++. .
T Consensus 207 ~-~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~------------~ 267 (426)
T PRK12307 207 G-K---HS-Q-SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTG------------V 267 (426)
T ss_pred c-c---cc-c-cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH------------H
Confidence 0 0 00 0 0000000011111111111112222222223333444566788888887 576654 3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccc
Q 009362 335 ARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414 (536)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (536)
.........++.+++.++.+++.||++||+.+..+.++..+..+.+..... ..........+...+...+..+.
T Consensus 268 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ------DNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHHhcccHhHH
Confidence 345556677788999999999999999999888887776665544433222 11222222222222223333345
Q ss_pred ccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 415 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
...++.|.+|++.|++++|+.+...++++.++|.+.|++.+
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999954
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=295.27 Aligned_cols=386 Identities=18% Similarity=0.241 Sum_probs=281.5
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.++++|+.+..++++++.++++....+++.|.+.+++ |++..+.|++.+++.++..+++++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r 77 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF--------GLTTVDAASLISAALISRWFGALMFGLWGDRYGRR 77 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 5678899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
+++.++.++.+++.+++++++++ +.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 78 LPMVTSIVLFSAGTLACGFAPGY------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
++.+++.+.+.. ..+||+.|++.++..++.++....+||++++... ++++++..+..++..+
T Consensus 152 ~~~l~~~l~~~~-----------------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 213 (405)
T TIGR00891 152 AAQVYSLVVPVW-----------------GDGWRALFFISILPIIFALWLRKNIPEAEDWKEK-HAGKALVRTMVDILYG 213 (405)
T ss_pred HHHHHHHHHHhc-----------------CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH-hhhhhhhhhHHHHHhc
Confidence 999998885432 1259999998777766666666678888764211 1111111111111110
Q ss_pred cccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHH
Q 009362 254 VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFK 333 (536)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 333 (536)
.+ +..+. ..+.......+ ..++.++.+...................+.|.++.+..|++..
T Consensus 214 ~~-~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------------ 274 (405)
T TIGR00891 214 GE-HRIAN-----IVMTLAAAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPH------------ 274 (405)
T ss_pred cc-hhhhh-----hhhhhhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHH------------
Confidence 00 00000 00000000111 1111112222333333344445556677888888876787765
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..+.......++.+++.++.+++.||+|||+.+..+..+..+.......... ..+.+.+..+..++...+..+
T Consensus 275 ~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 347 (405)
T TIGR00891 275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA-------NVAVLGLGLFFQQMLVQGIWG 347 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHccchh
Confidence 3345566777888999999999999999999888776655333222221111 122222332333333344456
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDD 457 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 457 (536)
....+..|.+|++.|++++|+.+...++|..++|.+.|.+.|..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 391 (405)
T TIGR00891 348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL 391 (405)
T ss_pred hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778899999999999999999999999999999999996643
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=300.64 Aligned_cols=439 Identities=20% Similarity=0.305 Sum_probs=334.3
Q ss_pred eehHHHHHHHHHHHHhhhhh--hcchhhhHhhhhhhhccCCCCCCCCCh--hhhHHHHHHHHHHHHHhhhhhcccccccc
Q 009362 16 YYHFKAIIIAGMGLFTDAYD--LFCIPPIMKLLGRIYYSDGADRFQIPN--AVVSPMLALALLGTVIGQLVFGRLGDLIG 91 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~G 91 (536)
...........++.+..+++ ....+++...+.++...... ..+. .+.+|+.++..++.+++++++|+++|++|
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~---~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDL---STGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhccccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666667777888886 55666677666665421111 2222 56799999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 92 RRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 92 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
||+.++++.+++.++.+++++++|+ .+++++|++.|+|.|+...+.+.|++|..|++.||...+..+....+|.
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~------~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi 191 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSW------YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGI 191 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHH
Q 009362 172 LASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKV 251 (536)
Q Consensus 172 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~ 251 (536)
.++..++.... ....+||..+.+..+++++..+..+++||||+|+ .++++.+++++.+.+.
T Consensus 192 ~~~~~~~~~~~------------------~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~~l~~l 252 (513)
T KOG0254|consen 192 LLGYCINYGTS------------------KVYAGWRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKRSLKRL 252 (513)
T ss_pred HHHHHHhhhhc------------------cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHHHHHHH
Confidence 99966666551 1115899999999999999877788999999998 4467777788888877
Q ss_pred hccccccccc----cC-------CCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCC
Q 009362 252 LDVSISQIAE----EY-------PLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNG 320 (536)
Q Consensus 252 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (536)
++.+..+.+. .. ...+.+..+..+.++. ..++.++.+.+..+....+.+....|.+.+++. .|...
T Consensus 253 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~ 329 (513)
T KOG0254|consen 253 RGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPK--VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKS 329 (513)
T ss_pred hCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcc--hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCC
Confidence 7632111100 00 0011111122222211 122345566677777778888889999999887 67664
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccccc-----CCCchHH
Q 009362 321 HDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKW-----SKHTNFG 395 (536)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 395 (536)
.. .....+..+..+++.+++.++.||+|||++++.+...+.++.++++....... .....+.
T Consensus 330 ~~-------------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
T KOG0254|consen 330 DT-------------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWL 396 (513)
T ss_pred ch-------------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHH
Confidence 41 24455556666777778899999999999999999999999988886654221 1223456
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHH
Q 009362 396 FMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGV 475 (536)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 475 (536)
.+...+++...+..+..++.+.+.+|.+|.+.|+++.++....+++.+.+....+..+.+.. +....|..++++
T Consensus 397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~------~~~~~f~~f~~~ 470 (513)
T KOG0254|consen 397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL------GIGGTFGYFGGI 470 (513)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHH
Confidence 66677777788888889999999999999999999999999999998888877777664421 234577777777
Q ss_pred HHHHHH-HhheeeccccccchhhcccccCc
Q 009362 476 CFMGFA-ITYFFTRETMGRSLEENEKEDDS 504 (536)
Q Consensus 476 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 504 (536)
+.+... +.+++.||+|+++.+++++...+
T Consensus 471 ~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 471 CLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 777777 78889999999999988775543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=294.97 Aligned_cols=409 Identities=16% Similarity=0.191 Sum_probs=275.9
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHH-----HHHHHHHHHhhhhhcccccc
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPML-----ALALLGTVIGQLVFGRLGDL 89 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr 89 (536)
.++++.+...+++.+.+++|...++.+.|. +.+++++ +.++. .+++. ++.+++..+++++.|+++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr 90 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFP------QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR 90 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 345677778888999999999999988775 4555532 34444 34443 45667788999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcccccc--hhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHH
Q 009362 90 IGRRRVYGLALMLMVLSSLACGFSICTTKQC--VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQ 167 (536)
Q Consensus 90 ~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 167 (536)
+|||+++.++.++++++++++++++++...+ ....++++|+++|++.|..++....++.|++|+++|++..+..+.+.
T Consensus 91 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~ 170 (438)
T PRK09952 91 LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY 170 (438)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999971000 01158899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHh
Q 009362 168 GFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKD 247 (536)
Q Consensus 168 ~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~ 247 (536)
.+|.+++..+...+....++. ....+|||++|++.+++.++........||+|++...++ +.++.
T Consensus 171 ~~G~~l~~~~~~~l~~~~~~~-----------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~-~~~~~--- 235 (438)
T PRK09952 171 GVGLLLSTGLVSLISMMTTDE-----------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH-EQAAA--- 235 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCHH-----------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh-hcccc---
Confidence 999999988877764332210 013579999999988776665555556788887521110 00000
Q ss_pred HHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchh
Q 009362 248 MEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSA 327 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 327 (536)
+++.+. .+.. +++++.+.......++.....+....|.|.|+++..|.+..
T Consensus 236 -------------------~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~------ 286 (438)
T PRK09952 236 -------------------KKRIPV---IEAL-LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRE------ 286 (438)
T ss_pred -------------------cccCCH---HHHH-HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------
Confidence 000000 1111 11222233333344555567777888999998776776654
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHH
Q 009362 328 FEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFA 407 (536)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (536)
..........+..+++.++.|+++||+|||+.+..+.++..++...+..... ..+....+++..+..++.
T Consensus 287 ------~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 287 ------LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSIFWIVFFSIMLANIA 356 (438)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHH
Confidence 1112233345566777889999999999999888776665544332222111 011122222222322333
Q ss_pred hcCccccccccccccccccccchhhhHhHHHHH-HHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGK-VGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 408 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
.....+..+++..|.+|++.|+++.|+.+..+. +++.++|.+.+++.+..+ .+|...+.+.+++++++.+..+ .
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~----~~~~~~~~~~~~~~~i~~v~~~-~ 431 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG----GSWHSVAIYLLAGCLISAMTAL-L 431 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHHH-H
Confidence 333345667888999999999999999766654 899999999999976432 1466777777777777777665 4
Q ss_pred eccc
Q 009362 487 TRET 490 (536)
Q Consensus 487 ~~~~ 490 (536)
.+|+
T Consensus 432 ~~~~ 435 (438)
T PRK09952 432 MKDN 435 (438)
T ss_pred cccc
Confidence 5553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.04 Aligned_cols=375 Identities=11% Similarity=0.065 Sum_probs=275.1
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRV 95 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 95 (536)
+++|..++.+.++.+..........+.+|.+.+++ |.|+.+.|++.+.+.+++.+++++.|+++||+|||++
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 76 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSF--------HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL 76 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 34565555555555554444445566789999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 96 YGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
+..+.++.+++++++++++++ +.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~ 150 (390)
T PRK03545 77 LIGLFVLFIASHVLSALAWNF------TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGL 150 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999997 99999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhcc
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDV 254 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~ 254 (536)
++++.+. +..|||+.|++.+++.++..+ ...++||.|+. +++. .+..
T Consensus 151 ~l~~~l~-------------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~~~---~~~~------ 198 (390)
T PRK03545 151 PLGRVIG-------------------QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----HSGS---LKSL------ 198 (390)
T ss_pred hHHHHHH-------------------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Ccch---HHHH------
Confidence 9999884 345899999998777666543 33456665431 1100 0000
Q ss_pred ccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHH
Q 009362 255 SISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKV 334 (536)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 334 (536)
.+ ..++ +.++......++.....+....+.+.++.+..|.++. .
T Consensus 199 ---------------------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~------------~ 242 (390)
T PRK03545 199 ---------------------PL-LFRR--PALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSEN------------F 242 (390)
T ss_pred ---------------------HH-HHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------------H
Confidence 01 1111 1222233333333444455566777787776787766 3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccc
Q 009362 335 ARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414 (536)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (536)
.+.......++.+++.++.+++.||++||... .+..+..++...+..... ..+.+.+..+..+.......+.
T Consensus 243 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~g~~~~~~~~~ 314 (390)
T PRK03545 243 ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN-------SEWHLSVLSIFWGIAIMCIGLA 314 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHhcchHH
Confidence 44556667778899999999999999988654 444444444333322211 1233333444444444444455
Q ss_pred ccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheee
Q 009362 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFT 487 (536)
Q Consensus 415 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
......|..| +.+++++|+.+...++|..+||.+.|.+. +..|++..|++.+.+.+++.++.+...
T Consensus 315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS------LHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 5566677776 57899999999999999999999999995 466889999999988888888776443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=294.03 Aligned_cols=397 Identities=18% Similarity=0.209 Sum_probs=264.2
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHH---HHHHHHHHHHHhhhhhcccccccc
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSP---MLALALLGTVIGQLVFGRLGDLIG 91 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~---~~s~~~~~~~i~~~~~g~l~dr~G 91 (536)
++++++.+..++++.+.+++|...++...|.+.++++.. +.+..+.+. +.+..+++..++++++|+++||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~G 91 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPS-----GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHG 91 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666777778899999999999999999999998321 234444444 444555555699999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccc--cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHH
Q 009362 92 RRRVYGLALMLMVLSSLACGFSICTTK--QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGF 169 (536)
Q Consensus 92 rr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 169 (536)
||+++.++.++++++++++++++++.. ......++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...
T Consensus 92 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~ 171 (432)
T PRK10406 92 RKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIG 171 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHH
Confidence 999999999999999999999988611 011236899999999999999999999999999999999999999989889
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHH
Q 009362 170 GILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDME 249 (536)
Q Consensus 170 G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~ 249 (536)
|.++++.+...+.....+. ....+|||++|++.+++.++.+.....+||+|++. + ++.+
T Consensus 172 G~~~~~~~~~~~~~~~~~~-----------~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~---~-~~~~------ 230 (432)
T PRK10406 172 GQLLALLVVVVLQQTLEDA-----------ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE---T-RALK------ 230 (432)
T ss_pred HHHHHHHHHHHHHHhCCHH-----------HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH---H-hhhc------
Confidence 9888888766654322110 01357999999998888777666656678876531 0 0000
Q ss_pred HHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 250 KVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATS-WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
+..++. + ..+ + +..+..... .+.....++....|.|.++.+..|.+..
T Consensus 231 ------------------~~~~~~---~-l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~------- 279 (432)
T PRK10406 231 ------------------EAGSLK---G-LWR-N-RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHAN------- 279 (432)
T ss_pred ------------------ccccHH---H-HHh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------
Confidence 000111 1 111 1 223333333 3333567788889999999876777654
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhc-ccccccCCCchHHHHHHHHHHHHHH
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGV-PYSYKWSKHTNFGFMFLYALTFFFA 407 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (536)
..........+...++..+.|+++||++||+.+..+..+..+....+.. ... .......+.+..+.....
T Consensus 280 -----~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 350 (432)
T PRK10406 280 -----VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN----VSSPYAAFGLVMCALLIV 350 (432)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHH
Confidence 2334444445555677778899999999998877665544333221211 111 011122221121111111
Q ss_pred hcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 408 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
. ...+..+.+.+|.+|++.|++++|+.+..+++ .+...|.+.+.+ +..+ .+...+++.+++.+++.+..+
T Consensus 351 ~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g-----~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 351 S-FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIG-----METAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred H-HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhC-----CCcHHHHHHHHHHHHHHHHHH
Confidence 1 11234557789999999999999999988775 344577777755 3222 244556666666666666655
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=308.24 Aligned_cols=385 Identities=21% Similarity=0.321 Sum_probs=278.2
Q ss_pred hhHhhhhhhhccCCCCCCCCC---hhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIP---NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTT 117 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 117 (536)
+..|.+.+|+ +++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++++
T Consensus 110 ~~~~~i~~e~--------~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~- 180 (505)
T TIGR00898 110 TFSSTIVTEW--------DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNY- 180 (505)
T ss_pred cccccEEEEe--------cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccH-
Confidence 5667888888 998 8999999999999999999999999999999999999999999999999999997
Q ss_pred ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc
Q 009362 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK 197 (536)
Q Consensus 118 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~ 197 (536)
+.++++|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.
T Consensus 181 -----~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------------- 240 (505)
T TIGR00898 181 -----TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------------- 240 (505)
T ss_pred -----HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Confidence 999999999999999999999999999999999999999999999999999999887762
Q ss_pred cccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc----c--CCCCCCCCC
Q 009362 198 RQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE----E--YPLPPSPPQ 271 (536)
Q Consensus 198 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~ 271 (536)
+||+.|++.+++.++..+..+++||+|+|+.. +++.+++.+.+++..+.+..+... . .+..+++..
T Consensus 241 -------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (505)
T TIGR00898 241 -------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLIS-QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKK 312 (505)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccC
Confidence 39999999888888777777889999999743 444555555554443322111000 0 000000000
Q ss_pred hhhhhHHHhh-hhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 272 YPLISKRFLR-RHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 272 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
...+...... +.++..+.....++.....+++...+.+. .+.+. ........+..+++.
T Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~~~~~~~~~~i~~~ 372 (505)
T TIGR00898 313 QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-----LGGNI---------------YLDLFISGLVELPAK 372 (505)
T ss_pred CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCCh---------------HHHHHHHHHHHHHHH
Confidence 0111111111 11122333334444444445544443332 22211 123344566778888
Q ss_pred HHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccch
Q 009362 351 FVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRST 430 (536)
Q Consensus 351 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 430 (536)
++.+++.||+|||+.+.++.++.+++.+++..... ...+... ...+...++..+..+..+.+..|.+|++.|++
T Consensus 373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 446 (505)
T TIGR00898 373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYFLRT-ALAVLGKFGITSAFQMVYLYTAELYPTVVRNL 446 (505)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchHHHH-HHHHHHHHHHHHHHHHHHHHhcccccHHHHhh
Confidence 99999999999999999998888888777665543 1112222 22222333333344677788999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccchhh
Q 009362 431 CHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLEE 497 (536)
Q Consensus 431 ~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (536)
++|+.++...+|++++|++.+ +.+ .++..++.+++++++++.++.+ ++||++++++++
T Consensus 447 ~~g~~~~~~~ig~~i~p~i~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 447 GVGVCSTMARVGSIISPFLVY-LGE-------KWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred hHhHHHHHHHHHHHHHhHHHH-HHH-------HHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 999999999999999999998 422 2456788888888888877776 789998876543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=299.99 Aligned_cols=405 Identities=16% Similarity=0.200 Sum_probs=279.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.++.+|+.+..++++.+...++....++..|.+.+++ |++..+.+++.+.+.+++.+++++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 85 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF--------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR 85 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3456788888889999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
+++.++.++.+++.+++++++++ +.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 159 (496)
T PRK03893 86 LAMVISIVLFSVGTLACGFAPGY------WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
++.+++.+. +..+||+.|++.++..++.++....+||++++...+ ++.++..+..+....
T Consensus 160 ~~~~~~~l~-------------------~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 219 (496)
T PRK03893 160 AAQVYSLVV-------------------PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKH-AGKAPVRTMVDILYR 219 (496)
T ss_pred HHHHHHHHh-------------------ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhc-cccccchhHHHHHhc
Confidence 999999883 456899999886655555555555678776542111 110000000000000
Q ss_pred cccccccc-----------cCCCCCCCCChhh-------------hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 009362 254 VSISQIAE-----------EYPLPPSPPQYPL-------------ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQS 309 (536)
Q Consensus 254 ~~~~~~~~-----------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (536)
.+...... ..........+.. +......+.++.........+......+....+.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 299 (496)
T PRK03893 220 GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLP 299 (496)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHH
Confidence 00000000 0000000000000 00000000001111111111111112224567889
Q ss_pred HHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccC
Q 009362 310 KIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWS 389 (536)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (536)
.++++..|++.. ..+.......++.+++.++.+++.||+|||+.+..+..+..+..+.+.....
T Consensus 300 ~~l~~~~g~~~~------------~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---- 363 (496)
T PRK03893 300 TYLKTDLGYDPH------------TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG---- 363 (496)
T ss_pred HHHHhhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc----
Confidence 999765888766 4446667778888899999999999999999888776665555443332222
Q ss_pred CCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhh
Q 009362 390 KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIAL 469 (536)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~ 469 (536)
...+......+...+...+..+....+..|.+|++.|++++|+.+....+|+.++|.+.|.+.+ ..|+...+
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~------~~g~~~~~ 435 (496)
T PRK03893 364 --ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ------RLDLGTAL 435 (496)
T ss_pred --cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc------cCChHHHH
Confidence 1222222222222233333445666778899999999999999999999999999999999954 55677676
Q ss_pred HHHHHHH
Q 009362 470 LILGGVC 476 (536)
Q Consensus 470 ~~~~~~~ 476 (536)
...++.+
T Consensus 436 ~~~~~~~ 442 (496)
T PRK03893 436 ASLSFSL 442 (496)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=279.87 Aligned_cols=352 Identities=11% Similarity=0.047 Sum_probs=248.9
Q ss_pred hhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 009362 35 DLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI 114 (536)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 114 (536)
....+++.+|.+.+|+ |+|..+.|++.+++.+++++++++.|+++||+|||+++..+......+.+....++
T Consensus 6 ~~~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDI--------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF 77 (368)
T ss_pred HHHHHHhhHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc
Confidence 3456789999999999 99999999999999999999999999999999999987666555544433333335
Q ss_pred cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 115 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
++ +.++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.
T Consensus 78 ~~------~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~------------ 138 (368)
T TIGR00903 78 NY------EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY------------ 138 (368)
T ss_pred cH------HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 65 9999999999999985 5666777799999999999999999999999999999999984
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChh
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYP 273 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (536)
+..|||+.|++.++++++. ++..+++||+|++. +++.+. .+..+
T Consensus 139 -------~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~~-~~~~~------------------------ 183 (368)
T TIGR00903 139 -------TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFGF-KDAVK------------------------ 183 (368)
T ss_pred -------HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcch-HHHHH------------------------
Confidence 4568999999977666554 55566789998752 110000 00000
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 009362 274 LISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVT 353 (536)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (536)
.+ +...+ .+.++.+....++....+++...|.|.++++ .|++.. .+.......+.+. +..
T Consensus 184 ~~-~~ll~--~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-------------~~~~~~l~~~~g~---~g~ 243 (368)
T TIGR00903 184 EF-GALAG--RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-------------AGDAVALAILAGL---IGV 243 (368)
T ss_pred HH-HHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-------------HHHHHHHHHHHHH---HHH
Confidence 00 11111 1456777788888888999999999999977 666532 1122222233333 345
Q ss_pred HHHHHhhchh---HH-HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccc
Q 009362 354 VFFIDRIGRV---AI-QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRS 429 (536)
Q Consensus 354 g~l~d~~grr---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 429 (536)
+++.||..|| +. ......+.++....+..... ....+ ......+++.....+..+++.+|.+|++.|+
T Consensus 244 ~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rg 315 (368)
T TIGR00903 244 AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN-------RLALF-AFIGIAGLLMLPAYAIIMDWIGKFCDKELHG 315 (368)
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc-------cHHHH-HHHHHHHHhhhhhHHHHHHHHHHhcchhhcC
Confidence 7788887543 33 22233333333333332221 12222 2222233334344466778899999999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 430 TCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 430 ~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++.|+.+..++++++++|.+.+.+.. +....|.++++..+++.+..+
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--------~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--------SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988752 556788888888888877765
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=288.56 Aligned_cols=401 Identities=14% Similarity=0.118 Sum_probs=269.1
Q ss_pred hhhhcccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcc
Q 009362 6 LSALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGR 85 (536)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~ 85 (536)
.++.+....++++++.+...++..+...++.....+..|.+.+++ |++..+.+++.+.+.+++.+++++.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------gls~~~~g~~~~~~~~~~~~~~~~~G~ 93 (476)
T PLN00028 22 ATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL--------NLTKSDIGNAGIASVSGSIFSRLAMGP 93 (476)
T ss_pred cccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666777777777777777788888999999999 999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHH
Q 009362 86 LGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS 165 (536)
Q Consensus 86 l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 165 (536)
++||+|||+++..+.++++++.+++++++++ +.++++|++.|++.+.. .....++.|++|+++|++++++...
T Consensus 94 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~------~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~ 166 (476)
T PLN00028 94 VCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA------TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAG 166 (476)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHH
Confidence 9999999999999999999999999999886 88889999999998864 4456789999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCC-CCcchhhhhhhcHHHH
Q 009362 166 MQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMP-ESARYTALVEQNVMQA 244 (536)
Q Consensus 166 ~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~-esp~~l~~~~~~~~~~ 244 (536)
..++|..+++.+...+........ ..+..|||+.|++.+++.++..+..++++ +.|+. + .++.
T Consensus 167 ~~~~g~~~~~~~~~~i~~~~~~~~----------~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~----~--~~~~ 230 (476)
T PLN00028 167 WGNLGGGVTQLLMPLVFPLIKDAG----------APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG----N--YREL 230 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----------CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC----c--hhhH
Confidence 888888888777765543321100 01235899999998887776554444444 33321 0 0000
Q ss_pred HHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCcc
Q 009362 245 AKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQT 324 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 324 (536)
.+. ...++....+.+++.. ..+.++.+.+.++......+....+.|.++.+..|++..
T Consensus 231 ~~~----------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~--- 288 (476)
T PLN00028 231 KKS----------------GTMPKDSFSKVLRYGV---TNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLE--- 288 (476)
T ss_pred Hhc----------------CccccccHHHHHHHHH---cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHH---
Confidence 000 0000001111111111 113345455555555555566777889998776788765
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH-------HHHHhHHHHHHHHHHhhcccccccCCCchHHHH
Q 009362 325 RSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA-------IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFM 397 (536)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (536)
.+........++.+++++++|+++||++||+ .......+.+++.+++..... ....
T Consensus 289 ---------~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~--------~~~~ 351 (476)
T PLN00028 289 ---------TAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANS--------LGAA 351 (476)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccch--------HHHH
Confidence 4456777778889999999999999998752 222222222222222221111 1222
Q ss_pred HHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHH
Q 009362 398 FLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCF 477 (536)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 477 (536)
++..++.++......+..+++..+..| +.+|++.|+.+..+++|++++|.+.+ . .+..+|...|++.+++.+
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~------~~~~~y~~~f~~~~~~~~ 423 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T------GSSYSTETGISLMGVMII 423 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h------cCCccHhhHHHHHHHHHH
Confidence 222222222222223445566667655 68999999998888888888877654 1 113368889999988888
Q ss_pred HHHHHhh
Q 009362 478 MGFAITY 484 (536)
Q Consensus 478 ~~~~~~~ 484 (536)
++.++.+
T Consensus 424 i~~~~~~ 430 (476)
T PLN00028 424 ACTLPVA 430 (476)
T ss_pred HHHHHHH
Confidence 8877776
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=285.35 Aligned_cols=374 Identities=15% Similarity=0.203 Sum_probs=250.5
Q ss_pred ehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHH-HHH-----HHHHHHhhhhhccccccc
Q 009362 17 YHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPML-ALA-----LLGTVIGQLVFGRLGDLI 90 (536)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~g~l~dr~ 90 (536)
.+++....++++.+++++|+..+++..|.+.+++ +.++.+.+.+. +.. .++..+++++.|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~ 83 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF--------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV 83 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 4556778888999999999999999999999999 88877765443 322 233357899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhcccccch--hhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHH
Q 009362 91 GRRRVYGLALMLMVLSSLACGFSICTTKQCV--LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQG 168 (536)
Q Consensus 91 Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 168 (536)
|||++++.+.++++++++++++++++...+. ...++++|+++|++.|...+....+++|++|+++|++++++...+..
T Consensus 84 Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~ 163 (434)
T PRK15075 84 GRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ 163 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence 9999999999999999999999998610000 01478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhH
Q 009362 169 FGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDM 248 (536)
Q Consensus 169 ~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~ 248 (536)
+|..+++.+++.+...+... ..+..|||++|++.++..++........||++++. ++++
T Consensus 164 ~g~~~g~~~g~~l~~~~~~~-----------~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~--~~~~-------- 222 (434)
T PRK15075 164 VAVVFAALLGYLLNQWLSPA-----------QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL--ARKH-------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHhCCHH-----------HHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH--Hhhh--------
Confidence 99999998888875432210 01457899999986544333322222334432210 0000
Q ss_pred HHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 249 EKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
+.+..+.++. .. +.++.........+.....++....|.|.|+++..|++..
T Consensus 223 -------------------~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~------- 274 (434)
T PRK15075 223 -------------------RPSMREIFRS-LA-ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAA------- 274 (434)
T ss_pred -------------------ccccccHHHH-HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------
Confidence 0000001111 11 1112222223333444566778889999999887788765
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHH-HhhcccccccCCCchHHHHHHHHHHHHHH
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYL-AIGVPYSYKWSKHTNFGFMFLYALTFFFA 407 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (536)
..........++.+++.++.|+++||+|||+.+..+.++..+... .+..... .. .........+..++.
T Consensus 275 -----~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~ 344 (434)
T PRK15075 275 -----DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA----AP-SFARMLAVELWLSFL 344 (434)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc----CC-chHHHHHHHHHHHHH
Confidence 334556667778888999999999999999988776554433221 1111111 01 111111111111112
Q ss_pred hcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhccc
Q 009362 408 NFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDD 457 (536)
Q Consensus 408 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~ 457 (536)
.....+..+.+..|.+|++.|+++.|+.+..... ++.++|.+.|++.+..
T Consensus 345 ~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 345 YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 2222344556789999999999999997665554 5888999999997644
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=281.43 Aligned_cols=379 Identities=11% Similarity=0.041 Sum_probs=279.3
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
.|......+++.+..... ...++.+|.+.+|+ ++|.++.|++.+++.+++.+++++.|+++||+|||+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~ 78 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQAS--------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA 78 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH
Confidence 455555555555443333 66789999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
.+..+++++.+++++++++ +.++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+++.+
T Consensus 79 ~~~~l~~~~~~~~~~a~~~------~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 79 ISLLLIAVGALMRELYPQS------ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred HHHHHHHHHHHHHHHCcch------HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 899999999999999999999999999997 889999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC-CCCcchhhhhhhcHHHHHHhHHHHhcccc
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM-PESARYTALVEQNVMQAAKDMEKVLDVSI 256 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (536)
++++.+. ..+||+.+.+.++..++..+..+.. ++.|+ +++++
T Consensus 152 ~~~l~~~------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------- 194 (393)
T PRK09705 152 TPWLVQH------------------SETWYQTLAWWALPAVVALFAWWWQSAREVA-----SSHKT-------------- 194 (393)
T ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccCC--------------
Confidence 9887422 2379998877555544433333222 11111 00000
Q ss_pred ccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHH
Q 009362 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVAR 336 (536)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (536)
+....+.+ + .+..+...+..++....+++...|.|.++.+ .|.+.. .++
T Consensus 195 -----------~~~~~~~l-----~--~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~------------~ag 243 (393)
T PRK09705 195 -----------TTTPVRVV-----F--TPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQ------------YSG 243 (393)
T ss_pred -----------CcCCcccc-----c--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChh------------hhh
Confidence 00000000 1 1223444445555566777888999999988 788776 344
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (536)
.......++.++++++.+++.||++||+....+..+..++..++..... .... ... +..++......+...
T Consensus 244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~-~~~--~l~g~g~g~~~~~~~ 314 (393)
T PRK09705 244 SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL------QLPV-LWA--MVCGLGLGGAFPLCL 314 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc------hHHH-HHH--HHHHHhccchHHHHH
Confidence 6677788899999999999999999999888887777666655443222 1111 111 122223333345555
Q ss_pred cccccccc-ccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccc
Q 009362 417 IVPAELFP-ARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRS 494 (536)
Q Consensus 417 ~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (536)
....+..+ ++.+++..|+.+..++++..++|.+.|++.|..+ ++...|++.++++++..++.+.+.||++++.
T Consensus 315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-----NYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 55556664 6789999999999999999999999999977543 4677888888888887777776888877654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=285.13 Aligned_cols=403 Identities=13% Similarity=0.140 Sum_probs=269.4
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++++|..+..+++.....+.++...+...|.+.+ . |++..+.|++.+++.+++++++++.|+++||+|||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~-~--------g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~ 94 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-Q--------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 94 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-c--------CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch
Confidence 3455666666667777777777777778887664 4 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHH-H
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGIL-A 173 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-i 173 (536)
+++++.++.+++.+++++++.. ..+++.+++.|++.|++.|...+.....+.|++|+++|++++++.+.+.++|.. .
T Consensus 95 ~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 172 (452)
T PRK11273 95 FLPAGLILAAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLP 172 (452)
T ss_pred hHHHHHHHHHHHHHHHHhhhcc--cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999988876421 011378899999999999999898889999999999999999999999998864 4
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
+++++..+. ...+||+.|++.+++.++. ++..+++||+|+.... +++++..++..
T Consensus 173 ~~l~~~~~~-------------------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~--- 228 (452)
T PRK11273 173 PLLFLLGMA-------------------WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL--PPIEEYKNDYP--- 228 (452)
T ss_pred HHHHHHHHH-------------------HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC--CChhhhhhccc---
Confidence 555443331 1237999999977766654 5555677888763111 11111100000
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
++.+ . ..+++.+..+.+.+... +.+.++...+..++.....++...|.|.|+++..|++..
T Consensus 229 ----~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~----------- 289 (452)
T PRK11273 229 ----DDYN-E-KHEQELTAKQIFMQYVL--PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD----------- 289 (452)
T ss_pred ----cccc-c-ccCCCccHHHHHHHHHH--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----------
Confidence 0000 0 00011111111111111 224566666666666677788889999999987777765
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhh--chhHHH-HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhc
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRI--GRVAIQ-ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANF 409 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (536)
.+........++.+++.++.|+++||+ +||+.. .....+..++.+.+..... .+.+... +..+..+....
T Consensus 290 -~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~-~~~~~~g~~~~ 362 (452)
T PRK11273 290 -KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA-----GNPTVDM-ACMIVIGFLIY 362 (452)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc-----cChHHHH-HHHHHHHHHHH
Confidence 333455566778888999999999999 455432 2222222222222221111 1112222 22222222222
Q ss_pred CccccccccccccccccccchhhhHhHHHHHHHHHH-HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 410 GPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII-GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+.......+..|.+|++.||+++|+.+...++|+.+ +|.+.|.+.| ..||+..|++++++++++.+...
T Consensus 363 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~------~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 363 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------FFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH------HhcchHHHHHHHHHHHHHHHHHH
Confidence 222233345679999999999999999999998765 7999999954 55789999988888888877666
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=286.75 Aligned_cols=412 Identities=14% Similarity=0.112 Sum_probs=288.2
Q ss_pred ccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccC--------------CCCCCCCChhhhHHHHHHHHHHH
Q 009362 11 SAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSD--------------GADRFQIPNAVVSPMLALALLGT 76 (536)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~~g~~~s~~~~~~ 76 (536)
.....+.+|.+..+++++....+.|+..++...+.+.++-... ...+++++..+.|++.+++.+++
T Consensus 10 ~~~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~ 89 (465)
T TIGR00894 10 LPYFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQ 89 (465)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHH
Confidence 3445677889999999999999999999999988876621110 11145899999999999999999
Q ss_pred HHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhh--hcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcc
Q 009362 77 VIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFS--ICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKM 154 (536)
Q Consensus 77 ~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 154 (536)
.+++++.|+++||+|||+++.++.++++++.+++.++ .++ +.+++.|+++|++.+...+....++.|++|++
T Consensus 90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~ 163 (465)
T TIGR00894 90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGI------ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK 163 (465)
T ss_pred HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCc------hHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence 9999999999999999999999999999998887654 344 78999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCC-CchhHHHHHhhHHHHHHHHHH-HcCCCCcc
Q 009362 155 TRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQAD-IAWRLILMLGSIPAAFTYYWR-MTMPESAR 232 (536)
Q Consensus 155 ~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~-~~~~esp~ 232 (536)
+|++++++...+..+|.++++++++.+. +. .+||+.|++.+++.++..+.+ .+.+|+|+
T Consensus 164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~-------------------~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 164 ERSRLLGMSTSGFQLGTFIFLPISGWLC-------------------ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999884 34 389999999888777654444 45667775
Q ss_pred hhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHh
Q 009362 233 YTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIY 312 (536)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (536)
.. ++..+++++..++.. +++....+++.+ +++ .. ..+.++...+..++.....+....|.|.|+
T Consensus 225 ~~---~~~~~~~~~~i~~~~-------~~~~~~~~~~~~---~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 225 IH---PCISKFEKKYINSSL-------QGQKGSTRQSLP---IKA-IP--KSLPVWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred cC---CCCCHHHHHHHHhhc-------ccccCCCCCCCC---HHH-Hh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 111111111111110 000000011111 111 11 124567777778888888889999999999
Q ss_pred hhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH--------HHHhHHHHHHHHHHhhccc
Q 009362 313 HQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI--------QALGFFFMGVIYLAIGVPY 384 (536)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~--------~~~~~~~~~~~~~~~~~~~ 384 (536)
++.+|.+.. ..+.......++.+++.+++|+++||+++|+. +..+......+...+....
T Consensus 289 ~~~~g~s~~------------~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (465)
T TIGR00894 289 SWVLRVSGK------------ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY 356 (465)
T ss_pred HHHhCcChH------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888876 34466667778888999999999999865421 1111111111111111111
Q ss_pred ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc
Q 009362 385 SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG 464 (536)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 464 (536)
. .......+..+. ..+.......+..+....|..| +.+|.+.|+.+..+.++++++|.+.|.+.+..+ ..+
T Consensus 357 ~----~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~---~~~ 427 (465)
T TIGR00894 357 L----SAAFYLTIIILT-LANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDS---KNV 427 (465)
T ss_pred c----CCchHHHHHHHH-HHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC---chH
Confidence 1 011222222222 2222222223444455567776 489999999999999999999999998865321 124
Q ss_pred cchhhHHHHHHHHHHHHHhh
Q 009362 465 VTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ 484 (536)
|..+|.+.+++.+++.++..
T Consensus 428 ~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 428 WLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHHHHHHHee
Confidence 78889998888888877766
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=332.99 Aligned_cols=432 Identities=26% Similarity=0.388 Sum_probs=310.8
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCC---CCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGAD---RFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
..++.+..++|...++...+......+...++ +.+.+..+.+++.++..+|..+|+++.|+++||+|||++++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34566888999988887776665333222111 112255678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh---cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 009362 102 LMVLSSLACGFSI---CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178 (536)
Q Consensus 102 ~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~ 178 (536)
+..+++++.++++ ++ +.++++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++
T Consensus 85 ~~~i~~~~~~~~~~~~~~------~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNF------WMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred cccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 76 99999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccc
Q 009362 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQ 258 (536)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (536)
..+.+. ..+.+||+.+.+.++++++.++..+++||||+|+ ..+++.+|+++.+++.++.+..+
T Consensus 159 ~~~~~~----------------~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 159 YIVSYY----------------SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred cccccc----------------ccccccccccccccccccccccccccccccccee-ccccccccccccccccccccccc
Confidence 655211 1235799999999999988777778999999998 44556667777777754443322
Q ss_pred ccccCCC--CCC----CCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 259 IAEEYPL--PPS----PPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 259 ~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
.+.++.. .++ +..+..+.+... ..++....+.+..+....+.+....+.+.++++ .|.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~---------- 289 (451)
T PF00083_consen 222 EEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSF---------- 289 (451)
T ss_pred ccccccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc-ccccccc----------
Confidence 1111111 111 111222222111 001222222233333333444555666666655 5555441
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhh--cccccccCCCchHHHHHHHHHHHHHHhcC
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIG--VPYSYKWSKHTNFGFMFLYALTFFFANFG 410 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (536)
.......+..+++.+++.+++||+|||++++.+..+++++.+.++ .......+.......+....+....+..+
T Consensus 290 ----~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g 365 (451)
T PF00083_consen 290 ----LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLG 365 (451)
T ss_pred ----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 223334455666777778999999999999999988888877775 11110000011233344444445566667
Q ss_pred ccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 411 PNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
..+..+.+.+|++|++.|+++.|+....+++++++++.+.+.+.+ ..+....+.+++++++++.++.++++|||
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~------~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN------NLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc------cccccccchhhHHHHHHHHhheeEEEeeC
Confidence 778888999999999999999999999999999999999888854 33435678888888888888888899999
Q ss_pred cccchhhcccc
Q 009362 491 MGRSLEENEKE 501 (536)
Q Consensus 491 ~~~~~~~~~~~ 501 (536)
++++++|++++
T Consensus 440 ~g~~l~ei~~~ 450 (451)
T PF00083_consen 440 KGKTLEEIQEM 450 (451)
T ss_pred CCCCHHHHHhh
Confidence 99999988764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=279.02 Aligned_cols=390 Identities=19% Similarity=0.311 Sum_probs=279.0
Q ss_pred hhcccCcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccc
Q 009362 8 ALDSAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLG 87 (536)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~ 87 (536)
..++.+.++++|+.+..+.+..+..+++....++..|.+.+++ |.+..+.+++.+++.++..++.++.|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 76 (398)
T TIGR00895 5 NIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW--------GLDPVQLGFLFSAGLIGMAFGALFFGPLA 76 (398)
T ss_pred HHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555666777888888888888888888899999999999 99999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHH
Q 009362 88 DLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQ 167 (536)
Q Consensus 88 dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 167 (536)
||+|||+++..+.++.+++.++..+++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++...+.
T Consensus 77 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 150 (398)
T TIGR00895 77 DRIGRKRVLLWSILLFSVFTLLCALATNV------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY 150 (398)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHH
Confidence 99999999999999999999999998886 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHH-HHHHHHcCCCCcchhhhhhhcHHHHHH
Q 009362 168 GFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF-TYYWRMTMPESARYTALVEQNVMQAAK 246 (536)
Q Consensus 168 ~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~~~~~ 246 (536)
.+|..+++.+++.+. +..+||+.|++.++..++ ..+...++||++++.. +++.++..+
T Consensus 151 ~~g~~~~~~~~~~l~-------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (398)
T TIGR00895 151 PIGAAVGGFLAGWLI-------------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLV--SKRPETVRR 209 (398)
T ss_pred HHHHHHHHHHHHHHh-------------------hcccceeehhhhhhHHHHHHHHHHHhCCCCChHHH--hcCHHHHHH
Confidence 999999999998883 456899999987655444 4555567899887532 222222222
Q ss_pred hHHHHhccccccccccCCCC-CCCCChhhhhH-HHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCcc
Q 009362 247 DMEKVLDVSISQIAEEYPLP-PSPPQYPLISK-RFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQT 324 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 324 (536)
..++......++.++....+ +++...+...+ ...++..+..+.+....++.....+....+.|.+.++ .|.++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--- 285 (398)
T TIGR00895 210 IVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLS--- 285 (398)
T ss_pred HHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---
Confidence 22222111111111100000 11111111111 1111222334444444555556677777888855555 777765
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHH
Q 009362 325 RSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTF 404 (536)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (536)
..........++.+++.++.+++.||++||+.... ..+..+...++..... + ........+..
T Consensus 286 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~ 348 (398)
T TIGR00895 286 ---------LAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTLF------S-PTLLLLLGAIA 348 (398)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHhh------C-HHHHHHHHHHH
Confidence 34456677778889999999999999999854443 3333333333322111 1 22223333333
Q ss_pred HHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhh
Q 009362 405 FFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA 453 (536)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l 453 (536)
+++.....+...++..|.+|++.|+++.|+.+....+|..++|.+.|++
T Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 349 GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 4444444577788899999999999999999999999999999999875
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=279.34 Aligned_cols=375 Identities=13% Similarity=0.093 Sum_probs=282.0
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRV 95 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 95 (536)
.++++....++++++..+.+....++.+|.+.+++ |+|.++.+++.+.+.+++.+++++.|++.||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~ 74 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF--------NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ 74 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34667777888888999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 96 YGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
+..+.++.+++.+++++++++ +.+++.|++.|++.|...+....++.|++|+++|+++++..+....+|..++|
T Consensus 75 ~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 75 LIFGFALMILAVAGLMFSHSL------ALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 89999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccc
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVS 255 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~ 255 (536)
.+.+.+. .+..+||+.|.+.+++.++..+..++ .+.|+. .++++ ++
T Consensus 149 ~~~~~l~------------------~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~-~~------------ 194 (394)
T PRK03699 149 IIAAYLL------------------ARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP-KA------------ 194 (394)
T ss_pred HHHHHHH------------------hccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc-cc------------
Confidence 8888763 23468999999877766655443332 222221 00000 00
Q ss_pred cccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHH
Q 009362 256 ISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVA 335 (536)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 335 (536)
..+..+.. ..+.++...+..++.....+....|.|.|+++..|+++.+ .
T Consensus 195 --------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~ 243 (394)
T PRK03699 195 --------DKPVAKEK-----------WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------------A 243 (394)
T ss_pred --------cCcccccc-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------------h
Confidence 00000000 0123445555556666667788899999998878888773 3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccc
Q 009362 336 RHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (536)
+.......++.++++++.++++||++||+.+.....+..+...++..... .+. ..+..+..++...+..+..
T Consensus 244 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~G~~~~~~~~~~ 315 (394)
T PRK03699 244 GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD-------PSH-LLYAILGLGFFSSAIYTTI 315 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC-------chH-HHHHHHHHHHHHHHHHHHH
Confidence 35556667788899999999999999999888777666665554433322 122 2222333333333344555
Q ss_pred cccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 416 FIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 416 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.++..|..| +.++...|......++|..++|.+.|++.+ ..|++.++++.+++++++.+.+.
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 316 ITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA------HFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH------HhCchhhhhhhHHHHHHHHHHHH
Confidence 566677666 446778899999999999999999999955 45778888888888777766555
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=285.88 Aligned_cols=380 Identities=14% Similarity=0.070 Sum_probs=279.2
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
+|..+..++++.++..+|.+.++..+|.+.+++ |.+.++.+|+.+.+.++..++.+++|+++||+|||++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l--------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~ 75 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL--------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLM 75 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 577888899999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccC-CcccchhHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFA-NKMTRGAFIAAVFSMQGFGILASST 176 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~~G~~i~~~ 176 (536)
++.+++.++++++++++++ +.++++|+++|++.+...+.....+.+++ |+++|++++++......+|..+||.
T Consensus 76 ~~~~~~~~~~~~~~~a~~~------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~ 149 (495)
T PRK14995 76 LGGTLFGLASLAAAFSPTA------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL 149 (495)
T ss_pred HHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 99999999999999998888888887765 6789999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHH---------
Q 009362 177 VTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAK--------- 246 (536)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~--------- 246 (536)
+++++. +..+||+.|++...+.++. .+..+++||+++.. .++.+......
T Consensus 150 lgg~l~-------------------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~ 209 (495)
T PRK14995 150 VGGILL-------------------EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLIVAILLLV 209 (495)
T ss_pred HHHHhh-------------------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHHHHHHHHH
Confidence 999993 5668999999977666654 34445677765421 00111111000
Q ss_pred -hHHHHhcccccc-----------------ccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 009362 247 -DMEKVLDVSISQ-----------------IAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQ 308 (536)
Q Consensus 247 -~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (536)
..+...+..... ...+...+++..+.+ ..+ .+.+.......++.....++...+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~-----lf~--~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (495)
T PRK14995 210 YSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMR-----LFT--HRIILSGVVMAMTAMITLVGFELLM 282 (495)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHH-----HhC--CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 000000000001111 111 1334444455555556677778899
Q ss_pred hHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccccc
Q 009362 309 SKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKW 388 (536)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (536)
|.++++..|+++. .++.......++..++.++.|++.||+|+|+.+..+..+..++.+++.....
T Consensus 283 ~~~lq~v~g~s~~------------~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~--- 347 (495)
T PRK14995 283 AQELQFVHGLSPL------------EAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF--- 347 (495)
T ss_pred HHHHHHHcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---
Confidence 9999988898887 4557777788888899999999999999999888888777776655543322
Q ss_pred CCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 389 SKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
....+. .....++.+++.....+.......+..|++.++.+.++.++..++|+.+|+.+.|.+.+
T Consensus 348 -~~~~~~-~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 -STQQWQ-AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -CCchHH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 22233333333333345556667788999999999999999999999999999888754
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=281.92 Aligned_cols=388 Identities=15% Similarity=0.141 Sum_probs=277.2
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL 108 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 108 (536)
++...+++..++...|.+.+++ |.+..+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 74 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDL--------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG 74 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhh--------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHH
Confidence 3456678888899999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009362 109 ACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEAT 188 (536)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~ 188 (536)
++++++++ +.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.
T Consensus 75 ~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------ 142 (399)
T TIGR00893 75 LQAFAGAY------VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL------ 142 (399)
T ss_pred HHHHHcCH------HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH------
Confidence 99999986 999999999999999999999999999999999999999999999999999999999874
Q ss_pred cccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCC
Q 009362 189 TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPP 267 (536)
Q Consensus 189 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (536)
+..+||+.|++.++..++..+ ..++.||+|+. .+..++++.....++.. .+.+ ..++
T Consensus 143 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~---~~~~ 200 (399)
T TIGR00893 143 -------------IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK--AKWLTEEEKYIVVGGLL----AEQQ---GKGP 200 (399)
T ss_pred -------------HhCCchHHHHHHHHHHHHHHHHhhheecCCCCc--cccCCHHHHhhcchhhc----cccc---cccc
Confidence 445799999987777666544 34456776542 11111111111101000 0000 0001
Q ss_pred CCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 009362 268 SPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTI 347 (536)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (536)
++..+...++.. +.+.++...+..++..........+.|.++++..|.++. ..........++.+
T Consensus 201 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 265 (399)
T TIGR00893 201 STPKKYQIKELL---KDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL------------EAGFMASLPGIVGF 265 (399)
T ss_pred cCCCccchHHHh---cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHH------------HhhHHHHHHHHHHH
Confidence 111111111111 113455666666777777788888999999886777765 33356667778888
Q ss_pred hhHHHHHHHHHhhchhH--HHHHhHHH--HHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc
Q 009362 348 PGYFVTVFFIDRIGRVA--IQALGFFF--MGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF 423 (536)
Q Consensus 348 ~~~~~~g~l~d~~grr~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (536)
++.++.+++.||++||+ ........ ..+.......... . ............. .....+..+..+++..|.+
T Consensus 266 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 340 (399)
T TIGR00893 266 IGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN--Y--VNIPYAALALVAL-GFFGLGAGAIGWALISDNA 340 (399)
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc--c--chhHHHHHHHHHH-HHhchhhhhHHHHHHHhhc
Confidence 99999999999999986 11111111 1011111111111 0 0112222222222 2233335688889999999
Q ss_pred cccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHHHHhh
Q 009362 424 PARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 424 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 484 (536)
|++.|+++.|+.+...++|..++|.+.|.+.+ ..| +...+++.+++++++.+..+
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA------TTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc------CCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999965 445 78888888888777766654
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=278.57 Aligned_cols=371 Identities=15% Similarity=0.101 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLA 99 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (536)
..+....+..+..+. ....++..|.+.+++ |++.++.|++.+++.+++.+++++.|+++||+|||+++.++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~ 74 (377)
T TIGR00890 4 YVLVGTVIMCFTSGY-VYTWTLLAPPLGRYF--------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLG 74 (377)
T ss_pred EEeHHHHHHHHHhhH-HhhhhhHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHh
Confidence 333333344444443 556788999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 009362 100 LMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTM 179 (536)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~ 179 (536)
.++.+++.+++++++++ +.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 75 GILYGLGFTFYAIADSL------AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHH
Confidence 99999999999999997 999999999999999888888889999997 68999999999999999887766665
Q ss_pred HHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCcchhhhhhhcHHHHHHhHHHHhcccccc
Q 009362 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESARYTALVEQNVMQAAKDMEKVLDVSISQ 258 (536)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (536)
.+. +..+||+.|++.++..++..+.. ++++|+|+. +++++++.
T Consensus 148 ~~~-------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------- 191 (377)
T TIGR00890 148 SVI-------------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ---LIKTNIEV-------------- 191 (377)
T ss_pred HHH-------------------hcccHHHHHHHHHHHHHHHHHHHHHheecCchh---ccccCccc--------------
Confidence 552 34589999999887777654443 445544321 00000000
Q ss_pred ccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHH
Q 009362 259 IAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQ 338 (536)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 338 (536)
++++. ..++. .++ +.++......++..........+.+.+.++ .|.+.. .....
T Consensus 192 -------~~~~~---~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~ 245 (377)
T TIGR00890 192 -------SVKDY---TVWEM-LRT--PQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDG------------FLVLA 245 (377)
T ss_pred -------chhhh---hHHHH-HcC--ccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHH------------HHHHH
Confidence 00000 00111 111 223333333444334444444555666555 665543 34456
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccc
Q 009362 339 AIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIV 418 (536)
Q Consensus 339 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (536)
.....++.++++++.+++.||++||+.+..+..+..++.+.+..... . .........+..+.......+....+
T Consensus 246 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~g~~~g~~~~~~~~~ 319 (377)
T TIGR00890 246 VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM-----L-NDVLFLATVALVFFTWGGTISLFPSL 319 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc-----c-hhHHHHHHHHHHHHHhccchhccHHH
Confidence 66777888899999999999999999988888888777766654432 1 11122222222333333334556677
Q ss_pred ccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHH
Q 009362 419 PAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGF 480 (536)
Q Consensus 419 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 480 (536)
..|.+|+++|+++.|+.+....+|..++|.+.|.+.+ ..||+..|.+.+++++++.
T Consensus 320 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 320 VSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT------EIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh------hhchhhHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999954 5578889988887777654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=284.81 Aligned_cols=401 Identities=11% Similarity=0.052 Sum_probs=275.0
Q ss_pred CcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch
Q 009362 13 KTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR 92 (536)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 92 (536)
+...++|.++..+.+.......+...++...|.+.+++ |++.++.+++.+.+.++..++.++.|+++||+||
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~ 83 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIF--------QATYSETAWISSIMLAVLYAGGPISSILVNRFGC 83 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHh--------CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCc
Confidence 44566788877777776665556677888899999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHH-HHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 93 RRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGF-FRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
|++++.+.++.+++.+++++++++ +.+++ .|++.|++.+...+....++.++++ ++|+++.++.+.+..+|.
T Consensus 84 r~~l~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~ 156 (455)
T TIGR00892 84 RPVVIAGGLLASLGMILASFSSNV------IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFL 156 (455)
T ss_pred hHHHHhhHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHH
Confidence 999999999999999999999886 66654 5799999999877778888999996 789999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC-CCCcchhhhhhhcHHHHHHhHHH
Q 009362 172 LASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM-PESARYTALVEQNVMQAAKDMEK 250 (536)
Q Consensus 172 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~ 250 (536)
.+++++++.+. +..|||+.|++.+++.++..+..+++ ++.+.. +...++..+.
T Consensus 157 ~~~~~l~~~l~-------------------~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~--- 210 (455)
T TIGR00892 157 STLAPLNQYLF-------------------ESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ----RVSKSKSKEG--- 210 (455)
T ss_pred HHHHHHHHHHH-------------------HHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc----cccccccccc---
Confidence 99999998884 34579999999887776654443333 322210 0000000000
Q ss_pred HhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHH
Q 009362 251 VLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEE 330 (536)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (536)
....... ++.......+...+.......+ .+.++......+.....++....+.|.|+++ .|++..
T Consensus 211 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~--------- 276 (455)
T TIGR00892 211 LPPDGST--KKLSKKSTAEKINRFLDFSLFT--HRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEY--------- 276 (455)
T ss_pred CCCCCcc--ccccccchhhhhhhhcchHHhc--CchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHH---------
Confidence 0000000 0000000000000000001111 2345555555566666777778888999877 787766
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHh--hchhHHHHHh--HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHH
Q 009362 331 AFKVARHQAIFAICSTIPGYFVTVFFIDR--IGRVAIQALG--FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFF 406 (536)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (536)
..+.......++.+++.++++++.|| +++|+...++ .++.+++++++..... .+.+++..+..++
T Consensus 277 ---~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--------~~~~~i~~~~~G~ 345 (455)
T TIGR00892 277 ---EAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD--------YTGLVIYCIFFGL 345 (455)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHH
Confidence 34456666778888888899999997 3334333332 2222333333222221 2333344444444
Q ss_pred HhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 407 ANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 407 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
......+...+++.|.+|++.+++++|+.+...++|.+++|.+.|.+.+..+ +|+..|++.+++.+++.+...
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g-----~~~~~f~~~~~~~li~~~~~~ 418 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK-----NYKYIFYASGSIVVSAGLFLA 418 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC-----CcchHHHHhhHHHHHHHHHHH
Confidence 5555556777888899999999999999999999999999999999965432 478888888877776655433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=267.46 Aligned_cols=372 Identities=13% Similarity=0.101 Sum_probs=263.5
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
..+..|+.+..+.++.+..........+.+|.+.+++ |.++++.|+..+++.++..+++++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr 85 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDL--------GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR 85 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 4445777766666666666656556667789999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
+++..+.++.+++.+++++++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i 159 (394)
T PRK10213 86 YVVILFAVLLTLSCLLVSFANSF------SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI 159 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHChH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
+|++++.+. +..+||+.|++.+++.++..+.. ...||+|+. +++..++
T Consensus 160 g~~l~~~l~-------------------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~~~~~--------- 208 (394)
T PRK10213 160 AAPLGSFLG-------------------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSHQKQN--------- 208 (394)
T ss_pred HHHHHHHHH-------------------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---cccchhH---------
Confidence 999999984 45689999999777666544333 346775431 0000000
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhh-hHHhhhhcCCCCCCccchhhHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQ-SKIYHQYIDGNGHDQTRSAFEEA 331 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 331 (536)
..+. .++ +.++...+..++.....+....+. |.+.++ .|+++.
T Consensus 209 ----------------------~~~~-l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~---------- 252 (394)
T PRK10213 209 ----------------------TFRL-LQR--PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-AGFGVD---------- 252 (394)
T ss_pred ----------------------HHHH-hcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------
Confidence 0011 111 223333333344444445555565 555544 788776
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCc
Q 009362 332 FKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGP 411 (536)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (536)
..+.......++.+++.++.+++.||.+++ .+..+..+..++.+++..... ..+.+.+..++.++.....
T Consensus 253 --~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~G~~~~~~ 322 (394)
T PRK10213 253 --GLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWGS-------DKIVATGVAIIWGLTFALV 322 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHhh
Confidence 334556667778889999999999996544 333333333333222222211 1223333333344444444
Q ss_pred cccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHh
Q 009362 412 NTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 483 (536)
.+...+.+.+..| +.++.+.++.....++|..+|+.+.|++.| ..|+...+...+.+.++..+..
T Consensus 323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~------~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 323 PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD------NIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccChhhHHHHHHHHHHHHHHHH
Confidence 4555556777777 446778888888889999999999999965 4566777777666655554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=272.68 Aligned_cols=375 Identities=14% Similarity=0.061 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 98 (536)
+.+....+..+...++.....+.+|. +.+++ |.|+.+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL--------GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF 86 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence 34444566677777777888888887 57788 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccc--cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLSSLACGFSICTTK--QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASST 176 (536)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~ 176 (536)
+.++.+++.+++.++...+. ..+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 166 (399)
T PRK05122 87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP 166 (399)
T ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence 99998888776655421100 0113688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccc
Q 009362 177 VTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSI 256 (536)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (536)
+++.+. +..|||+.+++.++..++..+.....|++++ . ++++. ..+
T Consensus 167 l~~~l~-------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~------- 212 (399)
T PRK05122 167 LGVLLY-------------------HWGGLAGLGLLIMLLALLGLLLARPRPAVPP---V-KGERL----PFR------- 212 (399)
T ss_pred HHHHHH-------------------HcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---C-Cccch----hHH-------
Confidence 999884 4557999988766655544433332333221 0 00000 000
Q ss_pred ccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHH
Q 009362 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVAR 336 (536)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (536)
+. .++ .+............+.....+.+.++.+ .|.+. ..
T Consensus 213 --------------------~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~ 252 (399)
T PRK05122 213 --------------------RV-LGR----VWPYGMGLALASIGFGTIATFITLYYAA-RGWDG--------------AA 252 (399)
T ss_pred --------------------HH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccc--------------ch
Confidence 00 001 1111111222233444556677777765 44421 11
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (536)
.......++.+++.++.+++.||+++|+.+..+..+.+++.+++..... .+. ..+..++.+++.....+...
T Consensus 253 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~G~~~~~~~~~~~ 324 (399)
T PRK05122 253 LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS-------PWM-ALIGAALTGFGFSLVFPALG 324 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc-------HHH-HHHHHHHHHHhHHHHHHHHH
Confidence 3344556677888899999999999999888887777777666554332 222 22333333333333345555
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
....|..|++.|+++.|+.+...++|..+++.+.|.+.+ ..|++..+++.+++++++.++.+ +.++++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS------WFGYPSIFLAAALAALLGLALTW-LLYRRA 392 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 666788999999999999999999999999999999854 55788999998888888877766 444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=269.99 Aligned_cols=370 Identities=12% Similarity=0.090 Sum_probs=264.5
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
+....++.+..+.......+.+|.+.+++ |.+.++.|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 76 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDV--------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA 76 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHc--------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 44555667777888888889999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 102 LMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
+.+++.+++++++++ +.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++++++.+
T Consensus 77 ~~~~~~~l~~~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 77 LCVIGNAMFTLSSSY------LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHhCcH------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999997 99999999999999988888899999999999999999999999999999999999888
Q ss_pred HHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccc
Q 009362 182 CKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIA 260 (536)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (536)
. +..+||+.|++.++..++..+ ...++||.++. ++.+.++ ..
T Consensus 151 ~-------------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~---~~------------ 193 (382)
T PRK10091 151 S-------------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE---AKGGLRE---QF------------ 193 (382)
T ss_pred h-------------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc---cccCHHH---HH------------
Confidence 3 456899999998776665433 34567775431 1111000 00
Q ss_pred ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHH
Q 009362 261 EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAI 340 (536)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
+. .++ +..+......++.....+....+.+.++.+..|+++. .......
T Consensus 194 ----------------~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------------~~~~~~~ 242 (382)
T PRK10091 194 ----------------HF-LRS--PAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSET------------SMTFIMM 242 (382)
T ss_pred ----------------HH-hcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHH
Confidence 00 111 1122222222333333344445666677665777766 4556677
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc-cccccc
Q 009362 341 FAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT-TTFIVP 419 (536)
Q Consensus 341 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 419 (536)
...++.+++.++.+++.||+++|+.+..+..+.+++.+++..... ..+.......+ ...+..+..+ ......
T Consensus 243 ~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 315 (382)
T PRK10091 243 LVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG------MKTASLIFAFI-CCAGLFALSAPLQILLL 315 (382)
T ss_pred HHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHH-HHHHHHhhhHHHHHHHH
Confidence 788889999999999999999999988888777776655443222 11222222222 2222112222 222333
Q ss_pred cccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheee
Q 009362 420 AELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFT 487 (536)
Q Consensus 420 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
.+..|++.++.+ ..+...++|.++||.+.|++.|.. .+|+..+.+.++++++.......+.
T Consensus 316 ~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 316 QNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG-----LAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc-----cCcchHHHHHHHHHHHHHHHHHHHh
Confidence 444444545444 446778899999999999996532 3688888887777666655555333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=273.19 Aligned_cols=410 Identities=13% Similarity=0.133 Sum_probs=276.8
Q ss_pred ehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHH
Q 009362 17 YHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVY 96 (536)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 96 (536)
.+|..+....+.+...+.++..+....|.+.+ . |+++++.+++.+++.++..+++++.|+++||+|||+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~--------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~ 94 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-Q--------GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-c--------CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence 35666677777778888888878888887764 6 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHH
Q 009362 97 GLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASST 176 (536)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~ 176 (536)
.++.++.+++.+++++.++. ..+++.+.+.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 95 PAGLILSAAVMLLMGFVPWA--TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred HHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 99999999998887765321 0123778899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccc
Q 009362 177 VTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVS 255 (536)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~ 255 (536)
+.+.... ...+||+.|++.+++.++. ++..+++||+|+... .++.++.+++ .
T Consensus 173 l~~~~~~------------------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~ 225 (438)
T TIGR00712 173 LVLLGMA------------------WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG--LPPIEEYRND-------Y 225 (438)
T ss_pred HHHHHHH------------------HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC--CCCchhcccc-------c
Confidence 7765432 2347999999987776664 455566788765310 0010000000 0
Q ss_pred cccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHH
Q 009362 256 ISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVA 335 (536)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 335 (536)
.++.. ++.+++.+..+.+.+... +.+.++...+..++.....++...+.|.++++..|+++. .+
T Consensus 226 ~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~------------~~ 289 (438)
T TIGR00712 226 PDDYN--EKAEQELTAKEIFMQYVL--PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD------------KS 289 (438)
T ss_pred ccccc--cccccccchHHHHHHHHc--cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh------------hH
Confidence 00000 000001111111111111 123455555555555666778888999999987788776 33
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHH---HHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcc
Q 009362 336 RHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGV---IYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPN 412 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (536)
+.......++.+++.++++++.||+++++....+.....+ +.+.+..... .+.+.. ....+..+....+..
T Consensus 290 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~g~~~~~~~ 363 (438)
T TIGR00712 290 SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA-----GNPLVD-MICMIVIGFLIYGPV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC-----CchHHH-HHHHHHHHHHHccHH
Confidence 4556667778889999999999999643322222222211 1111111111 111221 122222222222222
Q ss_pred ccccccccccccccccchhhhHhHHHHHHHH-HHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGA-IIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
........|.+|++.|+++.|+.+..+++++ +++|.+.|.+.| ..||..++++..++++++.+..+++++|.|
T Consensus 364 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 364 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH------hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2223456799999999999999999988875 689999999955 457888999888888888888877777765
Q ss_pred c
Q 009362 492 G 492 (536)
Q Consensus 492 ~ 492 (536)
+
T Consensus 438 ~ 438 (438)
T TIGR00712 438 R 438 (438)
T ss_pred C
Confidence 3
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=272.73 Aligned_cols=383 Identities=10% Similarity=-0.042 Sum_probs=275.0
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL 108 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 108 (536)
.+...+......+.+|.+.+++ +.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFI 97 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHH
Confidence 3344445566678889998998 88999999999999999999999999999999999999988888777766
Q ss_pred Hhhh-----hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 109 ACGF-----SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 109 ~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
..+. .+++ +.+++.|++.|++.+...+...+++.|+.|+++|+++.++...+.++|..+|+.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~------~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 98 GLALNAFLPEPSL------LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred HHHHHHHcCCCcH------HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 5442 3443 8888999999999888888899999999999999999999999999999999999998853
Q ss_pred hhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccC
Q 009362 184 IFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEY 263 (536)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (536)
..+|++.|++.++..++..+..+.+||+++. +++++ +..+...+
T Consensus 172 -------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~-~~~~~~~~------------- 215 (417)
T PRK10489 172 -------------------AGGVAWNYGLAAAGTFITLLPLLRLPALPPP---PQPRE-HPLRSLLA------------- 215 (417)
T ss_pred -------------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---Ccccc-cchHHHHH-------------
Confidence 3469999998777777666666677776542 11110 00000000
Q ss_pred CCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHH
Q 009362 264 PLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAI 343 (536)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
.++. ..++ +.+....+..++. ....+...+.|.++++..|.++. ..+.......
T Consensus 216 ----------~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~g~~~~------------~~g~~~~~~~ 269 (417)
T PRK10489 216 ----------GFRF-LLAS--PVVGGIALLGGLL-TMASAVRVLYPALADEVWQMGAA------------QIGLLYAAVP 269 (417)
T ss_pred ----------HHHH-HHcC--hHHHHHHHHHHHH-HHHHhHHHhhHHHHHhccCCChh------------HhHHHHHHHH
Confidence 0000 0111 1122222222222 22345667889898887787766 3445666777
Q ss_pred HhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc
Q 009362 344 CSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF 423 (536)
Q Consensus 344 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (536)
++.+++.++.+++.||.++++.+..+..+.+++++++..... +....+..+..+++.....+...++..|..
T Consensus 270 ~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 341 (417)
T PRK10489 270 LGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM--------WILAVLCLALFGYLSAISSLLQYTLLQTQT 341 (417)
T ss_pred HHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888899999999999987777777777777766665544332 222233333333333333355667888999
Q ss_pred cccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccchhhcccc
Q 009362 424 PARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLEENEKE 501 (536)
Q Consensus 424 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (536)
|++.||+++|+.+...++|..++|.+.|.+.+ ..|+..++++.+++.++..++.+...++.|+++.+|.+++
T Consensus 342 p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 342 PDEMLGRINGLWTAQNVTGDAIGAALLGGLGA------MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 99999999999999999999999999999955 4566778887777776666666657788887776665544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=250.13 Aligned_cols=392 Identities=16% Similarity=0.187 Sum_probs=305.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.++.+++.+.+..+........+...+++.+.+.+++ ++|++|.+++.++..+..++..++.|.+.||||.|
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~--------~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR 79 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDF--------GLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR 79 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------CCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch
Confidence 3445667777777777777788888999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
++..+++++..+-.+..+++.++. +++++++++++.|++.| .+.+...++++|+||+++|.++|+.. ..++|..+
T Consensus 80 ~~~~~s~~l~~IP~~~~~~a~~~~---~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av 154 (417)
T COG2223 80 KWTILSMLLLLIPCLGLAFAVTYP---STWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAV 154 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC---chHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHH
Confidence 999999999999999999998761 12599999999999854 78899999999999999999999999 88999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
...++..+....+. ..||....+..+..++. +..++...|.|... .+.++.....+
T Consensus 155 ~q~~~P~v~~~~g~----------------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r---~~~~~~~~~~~---- 211 (417)
T COG2223 155 AQLVAPLVAVAFGF----------------LAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR---ASVKPQLPAQL---- 211 (417)
T ss_pred HHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh---ccccccchhHH----
Confidence 99998888644321 02999988877766664 44555666665421 11100000111
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
+... ..+..|.+++.++.....+.++..++|.|+++++|.++.+
T Consensus 212 ------------------------~~v~--~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~---------- 255 (417)
T COG2223 212 ------------------------KAVF--SNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT---------- 255 (417)
T ss_pred ------------------------HHHh--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh----------
Confidence 1111 1246888888999989999999999999999999999884
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcc
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPN 412 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (536)
++.......+.+.+.+.++|+++||+|.++++...+..++++..+....................+.....+.+.+ +
T Consensus 256 --Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G-n 332 (417)
T COG2223 256 --AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG-N 332 (417)
T ss_pred --HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC-c
Confidence 3356666666777789999999999999999999999999988888776642211122333333333333333333 4
Q ss_pred ccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 413 TTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
...+.++...+|+ +.|.+.|+...++.+|++.-|...+...+.++ .+...|+++..+.+++.++.+..
T Consensus 333 Gsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-----~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 333 GSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-----SYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred chheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888885 58999999999999999999999999987664 47889999999999998877733
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=265.90 Aligned_cols=365 Identities=13% Similarity=0.059 Sum_probs=253.3
Q ss_pred HHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLM 103 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (536)
+.++.+..........+.+|. +.+++ |.|..+.|++.+++.+++.++++++|+++||+||||+++.+.++.
T Consensus 20 ~~~~~~~~~~~~~~~~p~l~~~l~~~l--------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (392)
T PRK12382 20 IAFAVFLTYMTVGLPLPVIPLFVHHDL--------GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLAC 91 (392)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHH
Confidence 334445555556666777775 57888 999999999999999999999999999999999999999998887
Q ss_pred HHHHHHhhh---hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 104 VLSSLACGF---SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 104 ~~~~~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
.++.+.+.. .+.. ...+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+...|.+++|++++.
T Consensus 92 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 92 GLAGLAYLLAAILPVS-APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 776553322 1110 011248899999999999998888889999999999999999999999999999999999998
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccc
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIA 260 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (536)
+. +..|||+.+.+..+..++........||.++. ++++. ..
T Consensus 171 l~-------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~------------ 211 (392)
T PRK12382 171 LH-------------------SHFGFAALALTTMVLPLLAWAFNGTVRKVPAH----AGERP----SL------------ 211 (392)
T ss_pred HH-------------------hccChHHHHHHHHHHHHHHHHHHHhccCCCCC----cccCc----hH------------
Confidence 83 44679988776555444333322233332210 00000 00
Q ss_pred ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHH
Q 009362 261 EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAI 340 (536)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
++. .+. ++......+...........+.+.++++ .|++.. .....
T Consensus 212 -----------~~~-~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~ 256 (392)
T PRK12382 212 -----------WSV-VGL--------IWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWAMA--------------GFTLT 256 (392)
T ss_pred -----------HHH-HHH--------HHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCchh--------------HHHHH
Confidence 000 000 1111111122223444555667777766 444321 12334
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 341 FAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 341 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
...++.+++.++.+++.||+|+|+.+..+..+..++.+++..... . +...+..++.+.......+...+...
T Consensus 257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~g~~~~~~~~~~~~~~~ 328 (392)
T PRK12382 257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT-------A-WVALAGAALTGAGCSLIFPALGVEVV 328 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc-------H-HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455667788899999999999999988888877777666554332 2 22222333333333333455666778
Q ss_pred ccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 421 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
|.+|+++|+++.|+.+...++|..++|.+.|.+.+ ..||+..|.+.+++.+++.++.+++
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 329 KRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT------SFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCchHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999954 5688999999998888887776633
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=271.59 Aligned_cols=377 Identities=12% Similarity=0.055 Sum_probs=267.2
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHH
Q 009362 21 AIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLAL 100 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (536)
.+++++++.++..++...+++..|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 82 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSL--------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 345566778888889888999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
++.+++.+++.+++++ +.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 83 VLFTLGSLFCALSGTL------NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HHHHHHHHHHHHhCCH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999998888876 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH-HHcCCCCcchhhhhhhcHHHHHHhH------HHH--
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW-RMTMPESARYTALVEQNVMQAAKDM------EKV-- 251 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~------~~~-- 251 (536)
+. +..+||+.|.+......+..+. ....|+.+.. +.+.+...... ...
T Consensus 157 l~-------------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~ 213 (471)
T PRK10504 157 LV-------------------EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ----TRRFDLSGFLLLAVGMATLTLA 213 (471)
T ss_pred HH-------------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc----CCCCChHHHHHHHHHHHHHHHH
Confidence 84 3457999999877666554333 3444554321 11111100000 000
Q ss_pred -hcccccc--------------------ccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Q 009362 252 -LDVSISQ--------------------IAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSK 310 (536)
Q Consensus 252 -~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (536)
.+.+... ..++...+++..+.+ ..++ +.+.......++..........+.|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 286 (471)
T PRK10504 214 LDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK-----LFRT--RTFSLGLAGSFAGRIGSGMLPFMTPV 286 (471)
T ss_pred HhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-----Hhcc--cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000001111111 1111 23444444444444555556677888
Q ss_pred HhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC
Q 009362 311 IYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK 390 (536)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (536)
|++...|.++. ..+.......++.+++.++.+++.||+|||+.+..+..+.++...++.....
T Consensus 287 ~~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----- 349 (471)
T PRK10504 287 FLQIGLGFSPF------------HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL----- 349 (471)
T ss_pred HHHHHcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc-----
Confidence 88876777765 4445666677777788889999999999999998888877777665554332
Q ss_pred CchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 391 HTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
....+...+..+..+.+.....+....+..+..|++.++.++|+.++...+|..+|+.+.|.+.+..+
T Consensus 350 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 350 LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11122222222222222222335556777788999999999999999999999999999999876544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=262.07 Aligned_cols=372 Identities=18% Similarity=0.225 Sum_probs=282.9
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhh
Q 009362 56 DRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVG 135 (536)
Q Consensus 56 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 135 (536)
++++++..+.|++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.+. +++.+++.|+++|++
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----GFYLLLVLRFLQGLG 141 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----cchhhHHHHHHhHHH
Confidence 4679999999999999999999999999999999999999999999999999999998876 336889999999999
Q ss_pred ccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhH
Q 009362 136 IGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI 215 (536)
Q Consensus 136 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 215 (536)
.|..+|+...+.+.|.|++||++..++...+..+|.+++.++++.+++ ...||+.+|++.++
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~------------------s~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE------------------SSLGWPSIFYVFGI 203 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc------------------cCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999962 34799999999888
Q ss_pred HHHHHHHH-HHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHH
Q 009362 216 PAAFTYYW-RMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSW 294 (536)
Q Consensus 216 ~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (536)
.+++..++ .++..|+|.. ++.-.+++.+.+++....+. ..++++.+|..+. ..+.+|.+.+..
T Consensus 204 ~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k~~~~-------~~~~~~vP~~~i~------ts~~vwai~~~~ 267 (466)
T KOG2532|consen 204 VGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGKSEAH-------VKKKPPVPYKAIL------TSPPVWAIWISA 267 (466)
T ss_pred HHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhcccccc-------cCCCCCCCHHHHH------cCHHHHHHHHHH
Confidence 88886544 4566788763 22222333333332111000 0000122232222 225689999999
Q ss_pred HHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch---------hHH
Q 009362 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR---------VAI 365 (536)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr---------r~~ 365 (536)
++.+..++.+..|+|.|+++++|++..+.| ...++..+...+..+++|.++||+.+ |..
T Consensus 268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G------------~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETG------------FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF 335 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCCChhhhh------------HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence 999999999999999999999999988544 77888888888899999999998744 444
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
-.++....+++++.+++... ...+..++++.+..++.+ .....+........+++.+..+|+.+....+.+++
T Consensus 336 n~i~~~~~ai~l~~l~~~~~-----~~~~~a~~~l~~~~~~~g--~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~ 408 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVLAFTSD-----EHRLLAVILLTIAIGLSG--FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFI 408 (466)
T ss_pred HhHHHHHHHHHHHeeeecCC-----CcchHHHHHHHHHHHHcc--cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777666654 122233333333222222 22222222223324588999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheee
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFT 487 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
+|.+.+.+.. .+ +...|+.+|++.+++.+++.++..++-
T Consensus 409 ~P~~vg~~~~-~~--t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 409 APLLVGIIVT-DN--TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHheeeEeC-CC--CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 9999999975 21 355899999999999999987776443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=257.69 Aligned_cols=390 Identities=14% Similarity=0.117 Sum_probs=278.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhh-hhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGR-IYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVY 96 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 96 (536)
.++.+.+..++.+.........+++.+.+.+ ++ ++|.+|.+++.+++.+++.++.++.|++.||+|.|+++
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~--------~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~ 103 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGF--------NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 4567788888888888899999999999876 78 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh-----hcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 97 GLALMLMVLSSLACGFS-----ICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 97 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
.++.+++++.+++.+++ +++ +.+++.|++.|++ |..++.....+++|+|+++||+++|+.....++|.
T Consensus 104 ~~~~ll~~i~~~~~~~a~~~~~~s~------~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~ 176 (462)
T PRK15034 104 VFSTAILIIPCVWLGIAVQNPNTPF------GIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGV 176 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCH------HHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHH
Confidence 99999999999999987 665 9999999999998 66889999999999999999999999977777777
Q ss_pred HHHHHHHHHHH-----HhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH-cCCCCcchhhhhhhcHHHHH
Q 009362 172 LASSTVTMAVC-----KIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM-TMPESARYTALVEQNVMQAA 245 (536)
Q Consensus 172 ~i~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~~~~ 245 (536)
.+++++...+. ...+...+. ....+..+||...++.+++.++..+..+ +.++.|. ++.+.++..
T Consensus 177 ~l~~~l~p~~i~~~l~~~~G~~~~~------~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~~~~~~~~~ 246 (462)
T PRK15034 177 SVMQLVAPLVIFVPVFAFLGVNGVP------QADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----SRASIADQL 246 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc------ccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----cccCHHHHH
Confidence 77766665543 222210000 0001245699988887777666554444 3443321 111111111
Q ss_pred HhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccc
Q 009362 246 KDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTR 325 (536)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 325 (536)
. .. +.+..|.+++.+++....+.++..+.|.++++.+ +..
T Consensus 247 -------------------------------~-vl--k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~---- 286 (462)
T PRK15034 247 -------------------------------P-VL--QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDV---- 286 (462)
T ss_pred -------------------------------H-Hh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChH----
Confidence 1 11 1145777888888888888888889999987733 111
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHH
Q 009362 326 SAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFF 405 (536)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (536)
.......+..+...+.++++|+++||+|+++++.++.+.+.++...+..... ..............+..+
T Consensus 287 --------~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~ 356 (462)
T PRK15034 287 --------NILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLF 356 (462)
T ss_pred --------HHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHH
Confidence 1112233345667778889999999999999999888777666543222221 000112222222222222
Q ss_pred HHhcCccccccccccccccc---------------------cccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc
Q 009362 406 FANFGPNTTTFIVPAELFPA---------------------RFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG 464 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 464 (536)
.....-+...+-++.+.+|+ ++.|.+.|+....+.+|+++.|.++|...+.++ +
T Consensus 357 ~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-----~ 431 (462)
T PRK15034 357 LTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-----S 431 (462)
T ss_pred HHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-----C
Confidence 22222235566677777774 157889999999999999999999999977665 5
Q ss_pred cchhhHHHHHHHHHHHHHhheee
Q 009362 465 VTIALLILGGVCFMGFAITYFFT 487 (536)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
+...|+.+.+..++|.++.|.+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 432 PVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999998888543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=260.06 Aligned_cols=363 Identities=16% Similarity=0.123 Sum_probs=260.0
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++..+.....+.+..+...++...+.+.+|.+.+++ +.+..+.++..+.+.+++.+++++.|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 79 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDF--------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP 79 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 345566667777777888888888889999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
++.++..+.+++.+++.+++++ +.+++.|++.|++.+...+...+++.|++|+++|.+..++......+|..++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 153 (406)
T PRK15402 80 VMLAGVAFFILTCLAILLAQSI------EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLG 153 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 8899999999999998889999999999999999999999988888999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
|.+++.+. +..+||+.|++.++..++..+ ..+..||+++.. +++ .+. ++..+
T Consensus 154 ~~i~~~l~-------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-~~~~~--- 206 (406)
T PRK15402 154 PLVGAALI-------------------HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEK-LSL-KELGR--- 206 (406)
T ss_pred HHHHHHHH-------------------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---ccc-ccH-HHHHH---
Confidence 99998884 345799999987777666544 334567765421 111 000 00000
Q ss_pred cccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHH
Q 009362 254 VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFK 333 (536)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 333 (536)
..+. ..+ .+.++...+..++..........+.|.++.+..|+++.+
T Consensus 207 --------------------~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~----------- 252 (406)
T PRK15402 207 --------------------DYKL-VLK--NRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYE----------- 252 (406)
T ss_pred --------------------HHHH-HHc--CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH-----------
Confidence 0001 111 123444444444444444555666788877767776552
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+.......++.+++.++.+++.||+++|+.+..+..+..++.+++..... .. ...+....+..+..+++.....+
T Consensus 253 -~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~~~~~~~~g~g~~~~~~ 328 (406)
T PRK15402 253 -YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATV--IS-SHAYLWLTAGLSLYAFGIGLANA 328 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--cc-cccHHHHHHHHHHHHHHHHHHhh
Confidence 223344455677888899999999999999988888777666665554321 00 11122222222223233222223
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDD 457 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 457 (536)
........ .+++.+|++.+..+....++..+|+.+.+.+.+..
T Consensus 329 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 329 GLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred hHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 33333333 34478999999999999999999999999986543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=272.23 Aligned_cols=377 Identities=15% Similarity=0.100 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLA 99 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (536)
+.+..++++.+...++....++..|.+.+++ |.+.++.+++.+.+.++..++.++.|+++||+|||++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDL--------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIS 73 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHH
Confidence 3456677788889999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 009362 100 LMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTM 179 (536)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~ 179 (536)
.++.+++.+++++++++ +.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~------~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 147 (485)
T TIGR00711 74 TFAFTLGSLLCGVAPNL------ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147 (485)
T ss_pred HHHHHHHHHHHhCcCCH------HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh
Confidence 99999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHh--------HHH
Q 009362 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKD--------MEK 250 (536)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~--------~~~ 250 (536)
++ .+..+||+.|++.+++.++..+ ..+++||+++. ++++.+..... ...
T Consensus 148 ~l-------------------~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~~~~~~~~ 205 (485)
T TIGR00711 148 WI-------------------IENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA---ASENFDFLGLLLLSVGLGSLLY 205 (485)
T ss_pred Hh-------------------ccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc---ccCCCcHHHHHHHHHHHHHHHH
Confidence 88 4567899999997777666543 34456665431 11111110000 000
Q ss_pred H--hccccccc--------------------cccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 009362 251 V--LDVSISQI--------------------AEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQ 308 (536)
Q Consensus 251 ~--~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (536)
. .+.+.+.. ..+...+++.... ...+ .+.++...+..+......+....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
T TIGR00711 206 GLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDL-----RLFK--YRNFTIGCVYMSLLGLGLYGSFYLL 278 (485)
T ss_pred HHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCH-----HHHc--CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 0000000000011 1111 1334445555666667777888899
Q ss_pred hHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccccc
Q 009362 309 SKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKW 388 (536)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (536)
|.++++..|+++. ..+.......++.+++.++++++.||++||+.+..+..+.+++..++.....
T Consensus 279 p~~~~~~~g~s~~------------~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~--- 343 (485)
T TIGR00711 279 PLYLQQVLGYTAL------------QAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT--- 343 (485)
T ss_pred HHHHHHhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---
Confidence 9999987888876 4446677777888999999999999999999998888888777776653221
Q ss_pred CCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 389 SKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
............++.+++.....+.......+..|++.++++.|+.+....+|+.+|+.+.+.+.+
T Consensus 344 -~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 344 -PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222222223333333322223444555677899999999999999999999999999998864
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=267.78 Aligned_cols=371 Identities=14% Similarity=0.143 Sum_probs=260.9
Q ss_pred HHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSS 107 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 107 (536)
+++...+++...+...|.+.+++ |++..+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 74 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEI--------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN 74 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHh--------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH
Confidence 45667788889999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 009362 108 LACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS-TVTMAVCKIFE 186 (536)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~-~~~~~l~~~~~ 186 (536)
+++++++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+
T Consensus 75 ~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----- 143 (379)
T TIGR00881 75 LFFGFSTSL------WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI----- 143 (379)
T ss_pred HHHHHhhhH------HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH-----
Confidence 999999987 99999999999999999999999999999999999999999999999999999 465555
Q ss_pred cccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCC
Q 009362 187 ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPL 265 (536)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (536)
....+||+.|++.+++.++. ++..++.+|+|+.. +.++++..+ .++ .+.+ .++.
T Consensus 144 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~-~~~~-~~~~ 198 (379)
T TIGR00881 144 --------------AELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPAEEMP------NEE-PDGD-AEKK 198 (379)
T ss_pred --------------HhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCccccCc------ccc-cccc-cccc
Confidence 24568999999877666654 44455667766521 111000000 000 0000 0000
Q ss_pred CCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHh
Q 009362 266 PPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICS 345 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (536)
+++....+...+...+ .+.++...+..+...........+.|.++.+..|+++. ..........++
T Consensus 199 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~ 264 (379)
T TIGR00881 199 EEELTKKQIFLQYVLL--NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE------------KASWAFTLYELG 264 (379)
T ss_pred cccccchHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------------HHHHHHHHHHHH
Confidence 0111111111111112 23455566666666667778888999999887788766 344666777788
Q ss_pred hhhhHHHHHHHHHhhch-hHHHH-HhH-HHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 346 TIPGYFVTVFFIDRIGR-VAIQA-LGF-FFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 346 ~~~~~~~~g~l~d~~gr-r~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
.+++.++.+++.||..+ |+... ... ....++......... .......+..+..+....+..+....+..|.
T Consensus 265 ~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (379)
T TIGR00881 265 GLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPA------ANPLMDLICLFALGFLVYGPQMLIGVIASEL 338 (379)
T ss_pred cchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcc------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 89999999999998643 33222 211 111122221111111 1122222333333333334445556678999
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchh
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIA 468 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~ 468 (536)
+|++.|+++.|+.+....+|+.++|.+.|.+.+ ..||+.+
T Consensus 339 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~ 378 (379)
T TIGR00881 339 APKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD------GFGWAGA 378 (379)
T ss_pred cCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH------hhccccc
Confidence 999999999999999999999999999999955 4466544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=255.75 Aligned_cols=350 Identities=17% Similarity=0.192 Sum_probs=255.2
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
..+....+........+.+..|.+.+++ |.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~ 79 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADL--------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFI 79 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 3333344555677778888999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 103 MVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
.+++.+++.+++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.
T Consensus 80 ~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 80 FALSSLGLALSNNI------ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHHHccH------HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 899999999999999999999999999999999999999999999999999999999884
Q ss_pred HhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHH-HHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc
Q 009362 183 KIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTY-YWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE 261 (536)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (536)
+..+||+.|++.++..++.. +..++.||+++. .++++.++..+..
T Consensus 154 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------- 199 (385)
T TIGR00710 154 -------------------VWLSWHAIFAFLSLAGILLSALIFFILPETLPY--EARIQISTYFETF------------- 199 (385)
T ss_pred -------------------HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--cccCCHHHHHHHH-------------
Confidence 34579999998777666553 344556776542 1111111111110
Q ss_pred cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHH
Q 009362 262 EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
++. .+ .+.++...+.........+....+.|.++++..|.++. ..+.....
T Consensus 200 --------------~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~g~~~~~ 250 (385)
T TIGR00710 200 --------------LLL-LK--SKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPS------------VFGLLFAL 250 (385)
T ss_pred --------------HHH-Hc--CchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHH------------HHHHHHHH
Confidence 111 11 12233333444444455566677788888776787765 34456666
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
..++.+++.++.+++.||+++|+.+..+..+..++.+++..... . ....+..........+.+.....+.......|
T Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 327 (385)
T TIGR00710 251 NIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI--L-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALE 327 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--h-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999888887777666555544322 0 00122233333333333333344666677778
Q ss_pred cccccccchhhhHhHHHHHHHHHHHHHHHHhh
Q 009362 422 LFPARFRSTCHGISGAFGKVGAIIGTVAFLWA 453 (536)
Q Consensus 422 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l 453 (536)
..| +.++++.++.+.....++.+.+.+.+.+
T Consensus 328 ~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 328 DFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred cCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 877 5699999999988887666666666644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=257.87 Aligned_cols=349 Identities=12% Similarity=0.063 Sum_probs=259.7
Q ss_pred HHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVL 105 (536)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 105 (536)
.++.+...+......+.+|.+..++ +.+..+.|++.+++.++..++++++|+++||+|||+++..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~ 76 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAG--------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAV 76 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHH
Confidence 3455666666777788889999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh-----cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 106 SSLACGFSI-----CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 106 ~~~~~~~~~-----~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
+.++..++. ++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 77 LVAVLPFVALLGGLNI------WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred HHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 988888877 65 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC--CCCcchhhhhhhcHH-HHHHhHHHHhccccc
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM--PESARYTALVEQNVM-QAAKDMEKVLDVSIS 257 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~-~~~~~~~~~~~~~~~ 257 (536)
+.+ ..+||+.|++.++..++..+..+.+ ||+++. ++++.+ +..++..+
T Consensus 151 l~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------- 201 (365)
T TIGR00900 151 MYA-------------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAAS---EIQALSNAVLRDTRE------- 201 (365)
T ss_pred HHH-------------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc---cccccchhHHHHHHh-------
Confidence 853 3479999998777666554433333 333221 111100 00000000
Q ss_pred cccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh-hhhhHHhhhhcCCCCCCccchhhHHHHHHHH
Q 009362 258 QIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSN-LFQSKIYHQYIDGNGHDQTRSAFEEAFKVAR 336 (536)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (536)
.+ +...+ .+.++......+.......... .+.|.+.++..|.++. ..+
T Consensus 202 ----------------~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 250 (365)
T TIGR00900 202 ----------------GI-KFVLK--NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGST------------HYG 250 (365)
T ss_pred ----------------HH-HHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchH------------HHH
Confidence 00 11111 1233334444444444444444 6778888776777665 344
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (536)
.......++.+++.++.+++.||.+||+.+..+..+.+++.+.+..... +.+...+..+..+++.....+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~ 323 (365)
T TIGR00900 251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-------NFPLFLVLWFAIGVGYGPINVPQG 323 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677888889999999999999999888877766666665554321 123333344444444444557777
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
++..|..|++.|+++.|+.+...+++..++|.+.|.+.|
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 324 TLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999865
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=257.74 Aligned_cols=379 Identities=16% Similarity=0.218 Sum_probs=257.2
Q ss_pred HhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHH-----HHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 30 FTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLA-----LALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s-----~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
+.+++|+..++...+.+.++++. +.++++.+.+.+ ...++..+++++.|+++||+|||+++.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 76 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFP------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG 76 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcC------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 56778888899999998888732 244555555443 3334445789999999999999999999999999
Q ss_pred HHHHHhhhhhcccccch--hhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 105 LSSLACGFSICTTKQCV--LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
++.+++++++++..... ...++++|+++|++.+...+...+++.|++|+++|++..++.+.+..+|.++++.++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988611000 1258899999999999999999999999999999999999999999999999999888775
Q ss_pred HhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccccc
Q 009362 183 KIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEE 262 (536)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (536)
...+.. ..+..+||+.|++.++..++..+.....||+|++. + ++++. +
T Consensus 157 ~~~~~~-----------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~---------------- 204 (394)
T TIGR00883 157 YLLGDD-----------ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE---K-AQEKH-K---------------- 204 (394)
T ss_pred HhcCHH-----------HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH---H-HHhcc-c----------------
Confidence 432210 01456899999987777666655556677766431 0 00000 0
Q ss_pred CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHH
Q 009362 263 YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFA 342 (536)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (536)
+.+.+. .+ ..++..+.++......+......+....+.|.++++..|.++. .........
T Consensus 205 ----~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~ 264 (394)
T TIGR00883 205 ----KKRGPI---RE-TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSAN------------SALLVLMLS 264 (394)
T ss_pred ----cccCCH---HH-HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh------------HHHHHHHHH
Confidence 000011 11 1111122344555555566667777888899999776787765 334556666
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHH-HHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIY-LAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
.+..+++.++.+++.||+|||+.+.....+..+.. ..+..... ....+......+..++......+...++..|
T Consensus 265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 339 (394)
T TIGR00883 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-----SGSFTLFFFLVLGLALIGGMYTGPMGSFLPE 339 (394)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77888889999999999999997775554443332 22211111 0112223333333333333444677788999
Q ss_pred cccccccchhhhHh-HHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHH
Q 009362 422 LFPARFRSTCHGIS-GAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCF 477 (536)
Q Consensus 422 ~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~ 477 (536)
.+|++.|+++.|+. +....+|..++|.+.|++.+. .| +...++...++++
T Consensus 340 ~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~------~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 340 LFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM------TGDWYAIGYYLAALAL 391 (394)
T ss_pred hCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH------cCcchhHHHHHHHHHH
Confidence 99999999999985 455567888999999999653 34 5555554444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=255.74 Aligned_cols=374 Identities=12% Similarity=0.112 Sum_probs=263.4
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhh-----hHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAV-----VSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
...+++.++.+.......+.+|.+.+++ |++..+ .|++.+++.++..++++++|+++||+|||+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 88 (408)
T PRK09874 17 TVAWLGCFLTGAAFSLVMPFLPLYVEQL--------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLL 88 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHh--------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 3445566677777778888999999998 887654 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
.+.++.+++.+++.+++++ +.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|.++++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (408)
T PRK09874 89 RSALGMGIVMVLMGLAQNI------WQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA 161 (408)
T ss_pred HHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888886 899999999999865 567788899999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccc
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSI 256 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (536)
++.+. +..+||+.|++.++..++..+ ..++++|+++. .++++..+. ++..
T Consensus 162 ~~~l~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------- 212 (408)
T PRK09874 162 GGLLA-------------------DSYGLRPVFFITASVLFLCFLVTLFCIRENFQP--VSKKEMLHM-REVV------- 212 (408)
T ss_pred HHHHH-------------------HHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhhhHH-HHHH-------
Confidence 99884 334799999987777665433 44556665431 111110000 0000
Q ss_pred ccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHH
Q 009362 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVAR 336 (536)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (536)
+. .++ .+.........+...........+.+.+..+..+ +..+ .....+
T Consensus 213 --------------------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~g 261 (408)
T PRK09874 213 --------------------TS-LKN-PKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG-NVSN--------IAFISG 261 (408)
T ss_pred --------------------Hh-CcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchH--------HHHHHH
Confidence 00 000 0111111222222222333444556666665222 2111 001223
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (536)
....+..++.+++.+..+++.||++||+.+..+..+..++.+.+..... .+...+..+..+++.....+...
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~ 333 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT--------PLQLGILRFLLGAADGALLPAVQ 333 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhhHhhHHHHH
Confidence 3444556677788888999999999999988887777666555443322 23333333334444444456666
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhe
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYF 485 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 485 (536)
+...+..|++.+++.+++.+....+|..++|.+.|.+.+ ..||+..|++.+++.+++.++.++
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~------~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 334 TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA------NYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHHHH
Confidence 677788898999999999999999999999999999954 567899999999888888777763
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=251.09 Aligned_cols=346 Identities=22% Similarity=0.325 Sum_probs=290.3
Q ss_pred HHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH
Q 009362 24 IAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLM 103 (536)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (536)
.+.+..+...++.....+..|.+.+++ +.+..+.+++.+...++..+++++.|+++||+|||+.+.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~ 74 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL--------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence 345566777888888899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 104 VLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
.++.++..+++++ +.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+
T Consensus 75 ~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 75 ALGSLLLAFASSL------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHHHhccH------HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998886 9999999999999999999999999999999999999999999999999999999999853
Q ss_pred hhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccC
Q 009362 184 IFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEY 263 (536)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (536)
..+||+.+++.++..++..+...+++
T Consensus 149 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 174 (352)
T cd06174 149 -------------------SLGWRWLFLILAILGLLLALLLLFLL----------------------------------- 174 (352)
T ss_pred -------------------HhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 34699999998877776655444332
Q ss_pred CCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHH
Q 009362 264 PLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAI 343 (536)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
+.++...+..++..........+.|.+..+..|.+.. ..+.......
T Consensus 175 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 221 (352)
T cd06174 175 ---------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA------------EAGLLLSLFG 221 (352)
T ss_pred ---------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHH
Confidence 1134445555666667777888889888885566655 4456777788
Q ss_pred HhhhhhHHHHHHHHHhhchhH-HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 344 CSTIPGYFVTVFFIDRIGRVA-IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 344 ~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
++.+++.++.+++.||++||+ .+..+..+..++.+.+..... .....+..+..+.+.....+....+..|.
T Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 293 (352)
T cd06174 222 LGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--------LALLLVALLLLGFGLGFAFPALLTLASEL 293 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHhccchhHHHHHHhh
Confidence 889999999999999999999 888888888888777765443 34444455555556666668888999999
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.|+++|++.+|+.+...+++..+++.+.+.+.+ ..+++..+++.+++.+++.++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~------~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLD------TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999954 55788999999999888877765
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=252.61 Aligned_cols=362 Identities=15% Similarity=0.127 Sum_probs=257.0
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
+....++.++.........+.+|.+.+++ |.|..++|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~ 79 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQE--------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45556777788888999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 102 LMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
+.+++.+++++++++ +.++++|++.|++.+...+.....+.+..++++|+++++....+.++|..+|+.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 80 IFAAGCAGLGLMVGF------WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999987 99999999999999988888888888999999999999999999999999999999987
Q ss_pred HHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc
Q 009362 182 CKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE 261 (536)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (536)
.+. ..|...+....+...+..+.....+|++. ++++
T Consensus 154 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------------- 189 (381)
T PRK03633 154 STE-------------------LMSVLPWVTGLVLAAILPLLFTRILNQQA-----ENHD-------------------- 189 (381)
T ss_pred ccc-------------------ccchHHHHHHHHHHHHHHHHHhcccCCCC-----CCCC--------------------
Confidence 421 11222222111111111111111222110 0000
Q ss_pred cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHH
Q 009362 262 EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
+++ ..+...++ .++......+.....+.....+.|.++++ .|.++. ..+.....
T Consensus 190 ------~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~------------~~g~~~~~ 243 (381)
T PRK03633 190 ------STS----IWPMLKLR---QARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDA------------SIGFWMAL 243 (381)
T ss_pred ------CCC----HHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH------------HHHHHHHH
Confidence 000 01111111 12222222222223334455678888877 676655 33355666
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
..++.+++.+..+++.||+++|+.+..+..+..++.+.+. .. ..... .....+.......|...+...|
T Consensus 244 ~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~--------~~~~~-~~~l~g~~~~~~~p~~~~~~~~ 312 (381)
T PRK03633 244 LVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ--------AAMAP-ALFILGAAGFTLYPVAMAWACE 312 (381)
T ss_pred HHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh--------HHHHH-HHHHHHHHHHhHHHHHHHHHHc
Confidence 7778889999999999999999988887777766654442 11 11111 1112222233445777787889
Q ss_pred cccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 422 LFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 422 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
..|++.++...+..+...++|..++|.+.|++.| ..++...|.+.+.+.++..+..+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~------~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 313 KVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ------NYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCccHHHHHHHHHHHHHHHHHH
Confidence 9988888888888888899999999999999954 55778888888888877665555
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=254.25 Aligned_cols=362 Identities=12% Similarity=0.048 Sum_probs=252.1
Q ss_pred HHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH-HHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL-ALMLMVL 105 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~ 105 (536)
.++..++......+.+|. +.+++ |.|..+.|++.+++.++..+.+++.|+++||+||||.++. +..+..+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~ 76 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEV--------RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAAL 76 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHccc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 356666666777787776 56788 9999999999999999999999999999999999887654 5666667
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 106 SSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAF--IAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~--~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
+.+++++++++ +.+++.|++.|.+.+...|...+++.|+.|+++|++. .+....+.++|.++++.+++.+.
T Consensus 77 ~~~~~~~~~~~------~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~- 149 (375)
T TIGR00899 77 ACLLFAWNRNY------FLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA- 149 (375)
T ss_pred HHHHHHhcchH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH-
Confidence 77888888886 8888999999988888888888999999887777654 57788888999999999999884
Q ss_pred hhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccccc
Q 009362 184 IFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEE 262 (536)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (536)
+..+||+.|++.+++.++..+ ..+++||+|+.. +++. + .++
T Consensus 150 ------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-~~~--------------- 191 (375)
T TIGR00899 150 ------------------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA---PGAL-T-RLE--------------- 191 (375)
T ss_pred ------------------HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc---cccc-C-cch---------------
Confidence 445899999998877666544 345578876531 1000 0 000
Q ss_pred CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHH
Q 009362 263 YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFA 342 (536)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (536)
. ++...++ .++......+...........+.|.++.+..|.++.+ .+......
T Consensus 192 ---------~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~g~~~~~~ 244 (375)
T TIGR00899 192 ---------V---RGLLASR---DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKL------------AGLMMGTA 244 (375)
T ss_pred ---------h---hhhhcCc---chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHH------------HHHHHHHH
Confidence 0 0001111 1111122222222233344556788877767877653 22334444
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
....+++.++.+++.||++||+.+..+.++..+....+..... .+...+..+..++......+....+..|.
T Consensus 245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 316 (375)
T TIGR00899 245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS--------LWALLMLQLLNAIFIGILAGIGMLYFQDL 316 (375)
T ss_pred HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777889999999999999888776665554443332222 22222222222332223345666777888
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.|++ ++++.|+.+...++|..++|.+.|.+.+ ..|++..|++.+++++++.++..
T Consensus 317 ~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 317 MPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE------RWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH------hccchhHHHHHHHHHHHHHHHHh
Confidence 8764 6799999999999999999999999854 45788899988888888877765
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=254.10 Aligned_cols=370 Identities=14% Similarity=0.130 Sum_probs=253.6
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
.+..++.+.+.++...++..|++.+..+.+.+++.+ |++++..|++.+.+.+.+++++|+.|+++|||.||+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f--------ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~ 99 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF--------NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR 99 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc--------CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence 345677888889999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
++.+|..+|.++.++++++..| |+++++|.+.|+|.+...|+++++++|.+|.++|++++++++.+.++|..+|
T Consensus 100 v~~vG~~iW~~Av~~~~fs~~F------wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG 173 (493)
T KOG1330|consen 100 VIAVGIFIWTLAVFASGFSNHF------WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLG 173 (493)
T ss_pred EEeeHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccccee
Confidence 9999999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
.+.+..+.+. ...|||.|+..+++++++.+ ..++.+|++|- ..++..+.
T Consensus 174 ~vvgs~va~~------------------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg------a~~~~~~~------ 223 (493)
T KOG1330|consen 174 YVVGSVVASL------------------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERG------ARDEVDGE------ 223 (493)
T ss_pred EEeeeeeccC------------------ccceEEEEEeehHHHHHHHHHHHhhccCcccc------cccccccC------
Confidence 9999888432 22399999999988888644 45566775441 11110000
Q ss_pred cccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh---cCCCCCCccchhhHH
Q 009362 254 VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY---IDGNGHDQTRSAFEE 330 (536)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~ 330 (536)
.....+..+.++..+..... +.+....+......+..-++..|.|.+.... .|.+..
T Consensus 224 --------~~~~~~~ts~~kDl~~l~~~---~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~--------- 283 (493)
T KOG1330|consen 224 --------NKMVKPFTSVWKDLKVLAKI---KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHN--------- 283 (493)
T ss_pred --------CcCCCCccchHHHHHHHHcc---CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccc---------
Confidence 00001122223333322221 1222222223333333334444444443321 333333
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh----HHHH-------HhHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 009362 331 AFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV----AIQA-------LGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFL 399 (536)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (536)
...+...+...++.+|.+++|.++||+.|+ .... .+..+....+++...... ...+..+++
T Consensus 284 ---~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~-----~s~~~~~il 355 (493)
T KOG1330|consen 284 ---ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS-----SSMIFGLIL 355 (493)
T ss_pred ---cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh-----HHHHHHHHH
Confidence 455677778888888888999999985331 1111 111112222222221111 111222222
Q ss_pred HHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhccc
Q 009362 400 YALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDD 457 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~ 457 (536)
+.+......... ....-+..|++|++.|.++.++...+..+ |.+-+|++.|.+.|..
T Consensus 356 ~~~g~~~~~~~~-a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 356 FLVGETISWFNW-ATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHhccc-ccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 222222222232 44445668999999999999999877665 5666677999887654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-30 Score=252.82 Aligned_cols=395 Identities=10% Similarity=-0.003 Sum_probs=267.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.++.....+...++.++..++.....++..|.+++++ ++++.+.|++.+.+.+++.+++++.|+++||+|||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~--------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r 91 (438)
T PRK10133 20 QSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK 91 (438)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3444666777777888999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh---hhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLAC---GFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFG 170 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 170 (536)
+++.++.++++++.+++ .+++++ +.++++|+++|+|.|...+..+.++.|+.|+++|.+.+++.+....+|
T Consensus 92 ~~l~~g~~~~~~~~~l~~~~~~a~~~------~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G 165 (438)
T PRK10133 92 AGIITGLFLYALGAALFWPAAEIMNY------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG 165 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence 99999999999999875 457776 999999999999999999999999999887777777899999999999
Q ss_pred HHHHHHHHHHHHHhhhc-ccccC-Ccccccc---cC--CCCchhHHHHH-hhHHHHHHHHH-HHcCCCCcchhhhhhhcH
Q 009362 171 ILASSTVTMAVCKIFEA-TTTRD-NDVNKRQ---HQ--ADIAWRLILML-GSIPAAFTYYW-RMTMPESARYTALVEQNV 241 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~-~~~~~-~~~~~~~---~~--~~~~w~~~f~~-~~~~~~~~~~~-~~~~~esp~~l~~~~~~~ 241 (536)
..+++.++..+...... ..+.. ....... .. ...+||++|+. .++..++.++. ....||.+.. +++
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~~~- 240 (438)
T PRK10133 166 AIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHS- 240 (438)
T ss_pred HHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----ccc-
Confidence 99999998876411000 00000 0000000 00 00257777764 33333333222 2334543210 000
Q ss_pred HHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHh-hhhcCCCC
Q 009362 242 MQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIY-HQYIDGNG 320 (536)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 320 (536)
++..+ ...+..++ ..+. +.++...+..++.....++...|.+.++ ++..|.++
T Consensus 241 ~~~~~-----------------------~~~~~~~~-ll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~ 294 (438)
T PRK10133 241 DAKQG-----------------------SFSASLSR-LARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_pred ccccc-----------------------chhhhHHH-HHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Confidence 00000 00000011 1111 2223333334444556666667778775 55578877
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHH
Q 009362 321 HDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLY 400 (536)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (536)
. ..+.......++.++|+++++++.||+++|+++..+..+..+.+++..+... ... ...
T Consensus 295 ~------------~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--------~~~-~~~ 353 (438)
T PRK10133 295 G------------FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------HVG-LIA 353 (438)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--------hHH-HHH
Confidence 6 4557778888899999999999999999999988887776665554433222 111 222
Q ss_pred HHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHH
Q 009362 401 ALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMG 479 (536)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~ 479 (536)
....+++.....|..++...|..|++ .+++.++..+ ..+|+.++|.+.|.+.| ..| .+.+|++...+.+..
T Consensus 354 ~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~------~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD------AAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHH------hccchHHHHHHHHHHHHHH
Confidence 33344455555688888889988754 6788888864 55788999999999854 444 566776655444444
Q ss_pred HHH
Q 009362 480 FAI 482 (536)
Q Consensus 480 ~~~ 482 (536)
..+
T Consensus 426 ~~~ 428 (438)
T PRK10133 426 FIF 428 (438)
T ss_pred HHH
Confidence 443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-30 Score=255.83 Aligned_cols=390 Identities=13% Similarity=0.095 Sum_probs=265.0
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-----
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI----- 90 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----- 90 (536)
+.+++.....++..+..+......++.+|...++. |.+.+++|.+ +.....+ ++.+++|+++||+
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~ 77 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFL 77 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCC
Confidence 33334445555666777788888889999998888 9999999997 4444444 6889999999999
Q ss_pred chhHH-HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHH
Q 009362 91 GRRRV-YGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGF 169 (536)
Q Consensus 91 Grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 169 (536)
||||. +.++.+..+++..++++.+.. .+++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+
T Consensus 78 Grrr~~ll~~~i~~~~~~~~~a~~~~~---~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~l 154 (491)
T PRK11010 78 GRRRGWLLATQLLLLVAIAAMGFLEPG---TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRL 154 (491)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 99985 667777777777777775321 12478889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHH
Q 009362 170 GILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDME 249 (536)
Q Consensus 170 G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~ 249 (536)
|.++++.++.++.+ ...|||..|++.++..++..+..+++||+++. .++++..+ +..
T Consensus 155 G~llg~~l~~~l~~------------------~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~--~~~~~~~~--~~~- 211 (491)
T PRK11010 155 AMLVSGGLALWLAD------------------RYLGWQGMYWLMAALLIPCIIATLLAPEPTDT--IPVPKTLE--QAV- 211 (491)
T ss_pred HHHHHHHHHHHHHh------------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--cccccchh--hhH-
Confidence 99999999988842 13589999999887777666655567886542 10100000 000
Q ss_pred HHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhH
Q 009362 250 KVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFE 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 329 (536)
.+.+++ ..++ +..+......+......+....+.+.++.+..|++..+
T Consensus 212 ----------------------~~~l~~-~~~~--~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~------- 259 (491)
T PRK11010 212 ----------------------VAPLRD-FFGR--NNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGE------- 259 (491)
T ss_pred ----------------------HHHHHH-HHcC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-------
Confidence 000111 1111 12222233333334444555567777776657887763
Q ss_pred HHHHHHHHHH-HHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHh
Q 009362 330 EAFKVARHQA-IFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFAN 408 (536)
Q Consensus 330 ~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (536)
.+... ....++.+++.+++|+++||+|+|+.+.++.++.++..+.+..... . ..+.+.......+.....+
T Consensus 260 -----~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~--~-~~~~~~l~~~~~l~~~~~g 331 (491)
T PRK11010 260 -----VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI--T-DKNLYSMGAAVFFENLCGG 331 (491)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--c-cccHHHHHHHHHHHHHHHH
Confidence 33443 4556788899999999999999988777666555544333221111 0 0111221111222111111
Q ss_pred cCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeec
Q 009362 409 FGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 409 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
.+. +..+++..+..+++.+++..|+.+....+|..+++.+.|++.| ..||...|.+.+++++++.+..+ +.+
T Consensus 332 ~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~------~~G~~~~f~~~~~~~l~~l~~~~-~~~ 403 (491)
T PRK11010 332 MGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE------AHGWPTFYLFSVAAAVPGLLLLL-VCR 403 (491)
T ss_pred HHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHHHH-HHH
Confidence 111 4446777888999999999999999999999999999999955 55788889988888888877776 444
Q ss_pred c
Q 009362 489 E 489 (536)
Q Consensus 489 ~ 489 (536)
+
T Consensus 404 ~ 404 (491)
T PRK11010 404 Q 404 (491)
T ss_pred h
Confidence 4
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-31 Score=254.54 Aligned_cols=347 Identities=19% Similarity=0.237 Sum_probs=256.6
Q ss_pred HHHHHhhhhhhcchhhhHh-hhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCIPPIMK-LLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
+++.+...++.....+..| .+.+++ |.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEEL--------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCS--------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 4556777777888889999 889999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 105 LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
++.++..+++++ +.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+
T Consensus 74 ~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l--- 144 (352)
T PF07690_consen 74 LGSLLLAFASNF------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL--- 144 (352)
T ss_dssp HHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHhhhhhhH------HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh---
Confidence 997776676765 79999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH-HHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW-RMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEY 263 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (536)
.+..+||+.|++.++..++..+. ..+++++|+....+++++++ +..+
T Consensus 145 ----------------~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~-------------- 192 (352)
T PF07690_consen 145 ----------------ISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--SKKP-------------- 192 (352)
T ss_dssp ----------------CCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT----HH--------------
T ss_pred ----------------hhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc--cccc--------------
Confidence 35667999999988888876553 34555554421011111000 0000
Q ss_pred CCCCCCCChhh-hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCC-CCCccchhhHHHHHHHHHHHHH
Q 009362 264 PLPPSPPQYPL-ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGN-GHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
+++.. ++... ++ +.++......+......+....+.|.++.+..|++ .. ..+.....
T Consensus 193 ------~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~ 251 (352)
T PF07690_consen 193 ------KPLKPGFKSLF-KN--PVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPS------------QAGLLFSI 251 (352)
T ss_dssp ------HCCCH-CTHHH-HH--HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHH------------HHHHHHHH
T ss_pred ------ccccccccccc-cc--chhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHH------------HHHHHHHH
Confidence 00000 11111 11 22333444444555566778889999877768887 33 44456677
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
..+..+++.++.+++.||+++|+..........+..+.+...... .+..+... ..++.+++.....+....+..|
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 326 (352)
T PF07690_consen 252 FGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----SSPVWLII-ALFLIGFGFGIVFPILFSLIQE 326 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----CHHHHHHH-HHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 777888889999999999998877777777766666666555440 11222222 3333334444446888899999
Q ss_pred cccccccchhhhHhHHHHHHHHHHHH
Q 009362 422 LFPARFRSTCHGISGAFGKVGAIIGT 447 (536)
Q Consensus 422 ~~p~~~~~~~~g~~~~~~~~g~~~~~ 447 (536)
..|++.+|++.|+.+...++++.++|
T Consensus 327 ~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 327 LVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=246.89 Aligned_cols=336 Identities=13% Similarity=0.133 Sum_probs=228.3
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL 108 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 108 (536)
.+........+.+.+|.+.+++ |.+..+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.+
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADL--------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3444444455567899999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009362 109 ACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEAT 188 (536)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~ 188 (536)
++.+++++ +.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.
T Consensus 84 ~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~------ 151 (392)
T PRK10473 84 LCSLAETS------SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM------ 151 (392)
T ss_pred HHHHhCcH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99998886 888999999999999989999999999999999999999999999999999999988873
Q ss_pred cccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCC
Q 009362 189 TTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPP 267 (536)
Q Consensus 189 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (536)
+..+||+.|++.++..++. ++..+++||+++. +++++.+..+..
T Consensus 152 -------------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------------- 196 (392)
T PRK10473 152 -------------LKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAPAASSKPREN------------------- 196 (392)
T ss_pred -------------hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccCCccchHHHH-------------------
Confidence 4568999999977766654 3344567776432 111100000000
Q ss_pred CCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 009362 268 SPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTI 347 (536)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (536)
++...+ +.++.......+..........+.|.++.+..|+++. ..+.......++.+
T Consensus 197 --------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~i 253 (392)
T PRK10473 197 --------SESLLN---RFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRG------------EYAIIMALTAGVSM 253 (392)
T ss_pred --------HHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHH------------HHHHHHHHHHHHHH
Confidence 011111 1111111111222222233445567777665777655 33455666777888
Q ss_pred hhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc
Q 009362 348 PGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF 427 (536)
Q Consensus 348 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 427 (536)
++.++.+++.||+|||+.+..+..+..++.+.+..... .........+...+...+. +. ....+..|.+.
T Consensus 254 ~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~-~~--~~~~~~~~~~~ 323 (392)
T PRK10473 254 TVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------HAVSLFGITLICAGFSVGF-GV--AMSQALGPFSL 323 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-HH--HHHHHhccCcc
Confidence 89999999999999999998888877777666655433 1111222222111111111 11 22234445443
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 428 RSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 428 ~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
|+ |.......++..+++.+.+++.+
T Consensus 324 ~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 324 RA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred cc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44444455666666666666643
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-29 Score=247.86 Aligned_cols=360 Identities=10% Similarity=0.021 Sum_probs=241.8
Q ss_pred hhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhh---hh-h
Q 009362 39 IPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACG---FS-I 114 (536)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~-~ 114 (536)
..+.++.+.+++ |.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++. .. .
T Consensus 32 ~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (402)
T TIGR00897 32 EQGWLSPFLKAL--------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHA 103 (402)
T ss_pred HHHhHHHHHHHh--------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 334556666888 99999999999999999999999999999999999999999999998877653 22 3
Q ss_pred cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccCC
Q 009362 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI-LASSTVTMAVCKIFEATTTRDN 193 (536)
Q Consensus 115 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~-~i~~~~~~~l~~~~~~~~~~~~ 193 (536)
++ +.+++.|++.|++.+...+.....+.+++|+++|++++++.+.+.++|. ++++++++.+.
T Consensus 104 ~~------~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~----------- 166 (402)
T TIGR00897 104 NY------PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI----------- 166 (402)
T ss_pred cH------HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 43 7888999999999888888888889999999999999999999999997 57898888773
Q ss_pred cccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCCh
Q 009362 194 DVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQY 272 (536)
Q Consensus 194 ~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (536)
+..||+..++......++. .+..++.++.++. .+++++++ .++. .
T Consensus 167 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-----------------------~ 212 (402)
T TIGR00897 167 --------PAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP--QHMQTREK-FSEL-----------------------G 212 (402)
T ss_pred --------cccchHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccCCcc-hhhH-----------------------H
Confidence 3456655554433322222 2223334443210 00000000 0000 0
Q ss_pred hhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHH
Q 009362 273 PLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFV 352 (536)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (536)
+..+ ... +.+.++...+..++.....++...+.|.++++ .|++..+ .........++.+++.+.
T Consensus 213 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~------------~~~~~~~~~~~~~ig~~~ 276 (402)
T TIGR00897 213 KAAT-ILF--TNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSE------------WLQIWGTFFFTNIVFNVI 276 (402)
T ss_pred HHHH-HHH--cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhH------------HHHHHHHHHHHHHHHHHH
Confidence 0001 111 12345555555666667778888999999877 8887763 334555667788999999
Q ss_pred HHHHHHhhchhHHHH-HhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchh
Q 009362 353 TVFFIDRIGRVAIQA-LGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTC 431 (536)
Q Consensus 353 ~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 431 (536)
.|+++||++||+.+. .+.+...++.+.+..... ...+ ..+...+..+..+.+..+..+. .....|..| ++|+++
T Consensus 277 ~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~-~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~ 351 (402)
T TIGR00897 277 FGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ--HFGH-SFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAA 351 (402)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH--ccCC-cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHH
Confidence 999999999888654 233333332222221111 0001 1222222333333333233333 344566655 679999
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 432 HGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 432 ~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.|+.+....++..++|.+.+.+.+ ..|+...+++.+++.+++.++..
T Consensus 352 ~g~~~~~~~lg~~~gp~i~g~l~~------~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 352 MSVLNLSAGLSAFLAPAIAVLFIG------FFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------hcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999955 45788899998888887777665
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=245.47 Aligned_cols=342 Identities=14% Similarity=0.120 Sum_probs=243.2
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL 108 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 108 (536)
.....+....+.|..|.+.+++ +.++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 86 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADL--------QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence 3344456677778889999999 99999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009362 109 ACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEAT 188 (536)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~ 188 (536)
++.+++++ +.+++.|++.|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.
T Consensus 87 ~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~------ 154 (401)
T PRK11043 87 GMLWVESA------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL------ 154 (401)
T ss_pred HHHHhcCH------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999886 899999999999988888888899999999999999999998889999999999999884
Q ss_pred cccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCC
Q 009362 189 TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPS 268 (536)
Q Consensus 189 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (536)
+..+||+.|++.++..++..+..++++|+++. +++ ++..+...
T Consensus 155 -------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~------------------- 197 (401)
T PRK11043 155 -------------NHFGWQAIFATLFAITLLLILPTLRLKPSKKA---RKQ--SQDALTFK------------------- 197 (401)
T ss_pred -------------hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccc--chHHHHHH-------------------
Confidence 44589999998877777665555556655431 111 11001110
Q ss_pred CCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 009362 269 PPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIP 348 (536)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (536)
+...+ +.++...+........++....+.|.++++ .|+++.+ .+.......++.++
T Consensus 198 --------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~------------~g~~~~~~~~~~~~ 253 (401)
T PRK11043 198 --------QLLKS---KTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPAD------------IGLSYVPQTIAFLV 253 (401)
T ss_pred --------HHHcC---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHH------------HHHHHHHHHHHHHH
Confidence 11111 112222222333334455666778888876 6777652 33445555677788
Q ss_pred hHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccccc
Q 009362 349 GYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFR 428 (536)
Q Consensus 349 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 428 (536)
+.++.+++.||+++|+.........+++.+.+..... ..... +....+.....++......+.......|..| +.+
T Consensus 254 g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (401)
T PRK11043 254 GGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL--LSHPS-LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QAT 329 (401)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--hccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccC
Confidence 8889999999999988766555544444333222111 00011 2222222223333333444666666667666 579
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 429 STCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 429 ~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
+++.|+.+..+..++..++.+.|.+.+
T Consensus 330 g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 330 GKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999998854
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=244.69 Aligned_cols=379 Identities=13% Similarity=0.040 Sum_probs=249.8
Q ss_pred eehHHHHHH-HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 16 YYHFKAIII-AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
+..+..+.. +.+..+...++...+.+.+|.+.+++ +.+..+.++..+++.++++++++++|+++||+|||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~ 82 (413)
T PRK15403 11 HAATLFFPMALILYDFAAYLTTDLIQPGIINVVRDF--------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP 82 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH
Confidence 334443333 33444667778888999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
+++.+.++++++++++.+++++ +.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus 83 ~l~~~~~~~~~~~~~~~~a~~~------~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (413)
T PRK15403 83 VLITGALIFTLACAATLFTTSM------TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG 156 (413)
T ss_pred HHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 8999999999999987777778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH-HHcCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW-RMTMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
|.+++.+. +..|||+.|++.++..++..+. .+++||+++. ++++. +..+..+
T Consensus 157 ~~lg~~l~-------------------~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~-~~~~~~~---- 209 (413)
T PRK15403 157 PLSGAALM-------------------HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF-SAKSVLR---- 209 (413)
T ss_pred HHHHHHHH-------------------HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC-ChHHHHH----
Confidence 99999884 3457999999988777765443 4567887541 11100 0000000
Q ss_pred cccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHH
Q 009362 254 VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFK 333 (536)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 333 (536)
..+. .. +.+.++...+..++.....+....+.|.++++..|.++.+
T Consensus 210 --------------------~~~~-ll--~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~----------- 255 (413)
T PRK15403 210 --------------------DFRN-VF--RNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ----------- 255 (413)
T ss_pred --------------------HHHH-HH--cCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH-----------
Confidence 0011 11 1134555555555566666777788899998867887663
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+........+.+++..+.+.+.++..+++.......+..++..++..... ... ..+....+.....+.+.....|
T Consensus 256 -~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~--~~~-~~~~~~~~~~~l~~~G~~~~~p 331 (413)
T PRK15403 256 -FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL--LWP-HVWLWSVLGTSLYAFGIGLIFP 331 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH--Hcc-ccHHHHHHHHHHHHHHHHHHhH
Confidence 234444455566666666666654443333322222222222222211100 000 1122122222222222222224
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFA 481 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 481 (536)
......-+. ....+|++.|+.+.....+..+++...+++.+. +-..+|...++++.+...
T Consensus 332 ~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 332 TLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-------GGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHH
Confidence 443222111 122379999999999999999999999988542 335566655555444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=244.39 Aligned_cols=371 Identities=11% Similarity=-0.010 Sum_probs=250.2
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
.+++.++..+.........+.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~ 79 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKEL--------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKL 79 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHH
Confidence 34455555554444556666677888 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 105 LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
+++++++++.+ . ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+.+.
T Consensus 80 ~~~~~~~~~~~-------~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 80 LGCLLMLFGIH-------P--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHH-------H--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777654 2 67899999999999999999999999999999999999999999999999999999532
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYP 264 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (536)
.|+..+.+.+...++..+..+.+||+|+....++.+.....+...+
T Consensus 151 --------------------~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------- 196 (393)
T PRK11195 151 --------------------HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDFFH-------------- 196 (393)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHHHH--------------
Confidence 3777777665554545555567888764310000010000111000
Q ss_pred CCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 009362 265 LPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAIC 344 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (536)
..+. ..++ +.+........+............+.++++.+|.++. ..+.......+
T Consensus 197 ---------~~~~-l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~------------~~G~~~~~~~~ 252 (393)
T PRK11195 197 ---------ACRV-LWRD--KLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLN------------QPAYLQAVVAI 252 (393)
T ss_pred ---------HHHH-HHhC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh------------HHHHHHHHHHH
Confidence 0001 1111 1111111111122223334445556667776787776 34467777888
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP 424 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 424 (536)
+.+++.++.+++.||.++++.+..+.. .++....+.... +.+...+..+..+++.....+...+...+..|
T Consensus 253 g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~ 323 (393)
T PRK11195 253 GIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--------SLLPAYPLLILIGALGGFFVVPMNALLQHRGH 323 (393)
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc
Confidence 899999999999999988887776643 333333332221 12222333333333333333445566677766
Q ss_pred ccc-cchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 425 ARF-RSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 425 ~~~-~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
++. +|++.++.+...+++..++..+.+.+. ..|.+..+++.+...++++.+.+.+
T Consensus 324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLLV-------KLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred ccccchhHHHHHhHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 554 799999999999999999999988662 4466777777666666666655533
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=259.61 Aligned_cols=377 Identities=22% Similarity=0.312 Sum_probs=273.1
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
..+.....+..+++++|.++|++++|+++||+|||+++++++++..++.++.++++|+ +.+++.|++.|++.++
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~------~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY------WMFLIFRFLSGFFGSG 187 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHhhccc
Confidence 7788899999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAA 218 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 218 (536)
...+...++.|++++++|+.+..+ ......+..++++.++++.. +||+.+++..++.+
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---------------------~Wr~~~~~~~~~~~ 245 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---------------------DWRWLFWIISIPSG 245 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 999999999999999999999999 66666677777777777732 69999999999998
Q ss_pred HHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccc-----ccc-cccc-----CCCC---CCCCChhhhhHHHhhhhh
Q 009362 219 FTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVS-----ISQ-IAEE-----YPLP---PSPPQYPLISKRFLRRHG 284 (536)
Q Consensus 219 ~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~-----~~~~---~~~~~~~~~~~~~~~~~~ 284 (536)
+.++..++.||||||+. .+++.+++.+.+++..+.+ ..+ .+.. .... ++......++.+. ..
T Consensus 246 ~~~~~~~l~~Es~rwl~-~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---l~ 321 (521)
T KOG0255|consen 246 LFLLLWFLPPESPRWLL-SKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPR---LR 321 (521)
T ss_pred HHHHHHHccCcChHHHH-HcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHH---HH
Confidence 88777777779999984 3555566666666654322 100 0000 0000 1111122222221 22
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+..+...+.++.....+++....... +|.+ -............++....+...|++|||.
T Consensus 322 ~~~~~~~~~~~~~~~~y~gl~~~~~~-----lg~~---------------~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~ 381 (521)
T KOG0255|consen 322 YRTLYLLFIWFVFSLVYYGLSLNVSG-----LGGN---------------IYLNFTLSGLVELPAYFRNGLLLPEFGRRP 381 (521)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhhhhh-----cCch---------------HHHHHHHHHHHHhhHHHHHHHHHHHhCcHH
Confidence 34555555565555666655443322 2221 113333444477777788899999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
....+..+..++++..++.... ...+...++..+..++...+. ...+.+..|++|+..|+.+.+.......++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i 456 (521)
T KOG0255|consen 382 PLFLSLFLAGIGLLLFGWLPDD----LGGWLHWILPLLGKFFIGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARLGSI 456 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887761 111233444444444444444 44488999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccchhhcc
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLEENE 499 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (536)
++|.+...... ......+.+++..+.+..++...++||++++.+.+..
T Consensus 457 ~ap~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~ 504 (521)
T KOG0255|consen 457 LAPLFPLLLRQ-------MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL 504 (521)
T ss_pred HHHHHHHHHhh-------hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence 99988865532 1122233335667777777775699999998875433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=244.30 Aligned_cols=336 Identities=15% Similarity=0.203 Sum_probs=234.6
Q ss_pred hcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhc
Q 009362 36 LFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSIC 115 (536)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 115 (536)
...+.|.+|.+.+++ |+++++.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++
T Consensus 7 ~~~~~p~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 78 (377)
T PRK11102 7 IDMYLPALPVIAADF--------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT 78 (377)
T ss_pred HHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 345568899999999 999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Q 009362 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDV 195 (536)
Q Consensus 116 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~ 195 (536)
+ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 79 ~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------------- 139 (377)
T PRK11102 79 I------DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL------------- 139 (377)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 6 899999999999999999999999999999999999999999999999999999999884
Q ss_pred cccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhh
Q 009362 196 NKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPL 274 (536)
Q Consensus 196 ~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (536)
+..+||+.|++.+++.++. ++..+++||+++. +++++.+.++. .+.
T Consensus 140 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------------------~~~ 186 (377)
T PRK11102 140 ------VWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERRQPFHLRTT------------------------IRN 186 (377)
T ss_pred ------HHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---cccCCCChHHH------------------------HHH
Confidence 3457999999877766665 3444567776431 11100000000 000
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009362 275 ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354 (536)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (536)
+.+.. +. +..+...+..++.....+....+.|.++.+..|+++. ..+.......++.+++.++.+
T Consensus 187 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------------~~g~~~~~~~~~~~~~~~~~g 251 (377)
T PRK11102 187 FASLF-RH--KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ------------NFGYYFALNIVFLFVMTIINS 251 (377)
T ss_pred HHHHH-cC--hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 01111 11 2233333333444444555666777777776777765 344566777788889999999
Q ss_pred HHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhH
Q 009362 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGI 434 (536)
Q Consensus 355 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 434 (536)
++.||+|||+.+..+..+..+..+.+..... .....+...+...+.. .......+.......|..| +.++++.++
T Consensus 252 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 326 (377)
T PRK11102 252 RFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---LDLGFWALVVGVAAFV-GCVSMISSNAMAVILDEFP-HMAGTASSL 326 (377)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHH-HHHHHhhHHHHHHHhcccc-ccchHHHHH
Confidence 9999999999888877654443322222111 0001122222222222 2222222334455667776 779999999
Q ss_pred hHHHHH-HHHHHHHHHHH
Q 009362 435 SGAFGK-VGAIIGTVAFL 451 (536)
Q Consensus 435 ~~~~~~-~g~~~~~~~~~ 451 (536)
.+.... +|..+++.+.+
T Consensus 327 ~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 877654 55666666544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=240.84 Aligned_cols=351 Identities=14% Similarity=0.107 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
.++.+.+..+..+...+......+.+|.+.+++ |.|+.+.+++.+++.++..++++++|+++||+|||+++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~ 77 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL--------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVIL 77 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence 344444444445555566677778899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
++..+..++.+++.+++++ +.+++.|++.|++.+...+....+..|.+++++|+++.+....+..+|..++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 78 VGMSIFILGTLVALFAHSL------TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHHHHHHHHccH------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998886 8999999999999988888888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccc
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSI 256 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (536)
++.+. +..+||+.|++.++..++. .+..++.||+++. ++++++..+..++
T Consensus 152 ~~~l~-------------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------ 202 (394)
T PRK11652 152 GGLLT-------------------TLFGWRACYLFLLLLGAGVTFSMARWMPETRPA----DARRTRVLASYRT------ 202 (394)
T ss_pred HHHHH-------------------hccChHHHHHHHHHHHHHHHHHHHHhCCccCcc----ccchhHHHHHHHH------
Confidence 99883 4458999999877666554 3445567887542 1111111111111
Q ss_pred ccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHH
Q 009362 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVAR 336 (536)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 336 (536)
. .++ +.++......+...........+.+.++++..|.++. ..+
T Consensus 203 ---------------------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~ 246 (394)
T PRK11652 203 ---------------------L-LSN--RRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSM------------TVS 246 (394)
T ss_pred ---------------------H-HcC--hHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHH------------HHH
Confidence 0 111 1122112222222233333444566677776777655 333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHH-HHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMG-VIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (536)
.......++.+++.++.+++.||.+++........... +.......... .+.+. .....+..+++.....+..
T Consensus 247 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~g~~~~~~~~ 320 (394)
T PRK11652 247 ILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGV-----MNVWT-LLVPAALFFFGAGMLFPLA 320 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44555667777788888888888874433322222222 21111111111 11222 2222233333333345777
Q ss_pred cccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhh
Q 009362 416 FIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS 454 (536)
Q Consensus 416 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~ 454 (536)
.++..|..| +.++++.++.+....+|+.+++.+.+.+.
T Consensus 321 ~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 321 TSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 777788887 57899999999999999999999999874
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=240.65 Aligned_cols=363 Identities=13% Similarity=0.066 Sum_probs=234.0
Q ss_pred HHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHH-HHHHhhhhhcccccccchhHHH-HHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALL-GTVIGQLVFGRLGDLIGRRRVY-GLALMLMVL 105 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~ 105 (536)
.+..+.......+.+|. +.+++ |++.+++|++.+...+ +..++.++.++ +||+||||.+ ..+.++.++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEV--------HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVL 94 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHH
Confidence 44555555555566555 67788 9999999999876655 56666655666 9999999875 556666667
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 106 SSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTR--GAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--g~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
+..+.++++++ +.+++.+.+.|...+...|....++.|+.++++| +...++.+.+.++|.+++|++++.+.
T Consensus 95 ~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~- 167 (393)
T PRK15011 95 ACTLFAWNRNY------FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA- 167 (393)
T ss_pred HHHHHHHhhHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH-
Confidence 77778888886 7666555555544556788888889998876655 34557888899999999999999984
Q ss_pred hhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHH-HHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccccc
Q 009362 184 IFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTY-YWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEE 262 (536)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (536)
+..|||..|++.++..++.. ....++||.++. ++++. + ..+ .
T Consensus 168 ------------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~--------~---- 210 (393)
T PRK15011 168 ------------------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPLAT-G---TLE--------A---- 210 (393)
T ss_pred ------------------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccccc-c---ccc--------c----
Confidence 34589999998877666654 444567876531 11100 0 000 0
Q ss_pred CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHH
Q 009362 263 YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFA 342 (536)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (536)
. ++ +++..+......+......+....+.|.++++..|+++.+ .+......
T Consensus 211 -----~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~------------~g~~~~~~ 261 (393)
T PRK15011 211 -----P-------RR-----NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKL------------AGVMMGTA 261 (393)
T ss_pred -----c-------cc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHH
Confidence 0 00 0011111112222222334445567888887767877653 22344445
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
.++.+++.++.|+++||++||+.+..+.....+....+..... .+..+... +..++......+....+..|.
T Consensus 262 ~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~-~l~~~~~g~~~~~~~~~~~~~ 333 (393)
T PRK15011 262 AGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS-------PAILLGLQ-LLNAIYIGILGGIGMLYFQDL 333 (393)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999999877665555444333322111 22222211 111111111112334556788
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
.|+ .+++++++.+...++|..++|.+.|.+.+ ..||+..|++.+++++++.+..+ +.||
T Consensus 334 ~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~------~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 334 MPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE------IWNYHAVFWFALVMIIATLFCLL-RIKD 392 (393)
T ss_pred CCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 885 59999999999999999999999999954 55788888888888887777766 4443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=240.21 Aligned_cols=384 Identities=11% Similarity=0.005 Sum_probs=261.5
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
+..++..++..++.....++..|.+++++ |++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~--------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAF--------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 45666778888888899999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh---hcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 009362 102 LMVLSSLACGFS---ICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178 (536)
Q Consensus 102 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~ 178 (536)
+++++.+++..+ +++ +.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..+++.++
T Consensus 77 l~~~g~~l~~~~~~~~~~------~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNY------TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHHHHHHHHHHhhccH------HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886543 454 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcc-cccC-Ccccc-----cccCCCCchhHHHHHhhHHHHHHHHHHHc--CCCCcchhhhhhhcHHHHHHhHH
Q 009362 179 MAVCKIFEAT-TTRD-NDVNK-----RQHQADIAWRLILMLGSIPAAFTYYWRMT--MPESARYTALVEQNVMQAAKDME 249 (536)
Q Consensus 179 ~~l~~~~~~~-~~~~-~~~~~-----~~~~~~~~w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~~~~~~~~ 249 (536)
..+....... .... ....+ ....+..+||++|++.+++.++..+...+ .||.++ +++++++..+
T Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~--- 223 (410)
T TIGR00885 151 QQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----SDAKQISFSA--- 223 (410)
T ss_pred HHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccccccchh---
Confidence 8885321000 0000 00000 00012347999999877766654433332 333211 0000000000
Q ss_pred HHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhH
Q 009362 250 KVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFE 329 (536)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 329 (536)
..+ ...++ +.++...+..++......+...+.+.|.++ .+..... +
T Consensus 224 ------------------------~~~-~~~~~--~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~-~~~~~~~-~----- 269 (410)
T TIGR00885 224 ------------------------SLS-RLARI--RHYREGVIAQFFYVGVQIMCWTFIIQYAVR-LIPGMTA-G----- 269 (410)
T ss_pred ------------------------hHH-HHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCH-H-----
Confidence 000 11111 223334445555555666677788888765 3322211 1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhc
Q 009362 330 EAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANF 409 (536)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (536)
.+.........+..+|+++++++.||+++|+.+.+...+..++.++...... .....++.+...+. .
T Consensus 270 ----~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~--------~~~~~~l~~~glf~-s 336 (410)
T TIGR00885 270 ----FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG--------HVGLYCLTLCSAFM-S 336 (410)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHH-H
Confidence 2223344444667889999999999999999988888887777766665433 22233333333333 3
Q ss_pred CccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccccccc-ccchhhHHHHHHH
Q 009362 410 GPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNAT-GVTIALLILGGVC 476 (536)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-g~~~~~~~~~~~~ 476 (536)
..+|..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|..+ ..+. +++.+|++...+.
T Consensus 337 ~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~-~~~~~~~~~~~~~~~~~~ 401 (410)
T TIGR00885 337 LMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKE-IAAAPAVNTSFILPLLCF 401 (410)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhc-ccccCccchHHHHHHHHH
Confidence 34488899999999877655555555544 999999999999977332 1112 3666776644333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=245.50 Aligned_cols=390 Identities=12% Similarity=0.109 Sum_probs=265.4
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhh-HhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPI-MKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
+..+.++..+++.++....+...++.. +-.+.+|. +....+.+++.++++++++++.++++.+.||++..+
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl--------~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~ 112 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDL--------KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK 112 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCcccc--------chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH
Confidence 334555666667777777777655443 33355666 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
.+....+++++..++.....|+ +.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|
T Consensus 113 ~l~~~~~~w~~~~~~~~~~~s~------~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~g 186 (495)
T KOG2533|consen 113 GLSVSGILWGLFGFLTAAVHSF------PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFG 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHH
Confidence 9999999999999888888887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhh-hhhhcHHHHHHhHHHHh
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTA-LVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~-~~~~~~~~~~~~~~~~~ 252 (536)
.+++..+.+.-+. ....||||.|++.++++++. ++.++++|+.|..-. ..+++++-..++.++
T Consensus 187 gliA~g~~~~~~~-------------~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~-- 251 (495)
T KOG2533|consen 187 GLIAYGVFKLNGS-------------GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRE-- 251 (495)
T ss_pred HHHHHHhhhhcCC-------------CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHh--
Confidence 9999987653222 45779999999988887775 556678999987210 111111111111111
Q ss_pred ccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHH
Q 009362 253 DVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAF 332 (536)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 332 (536)
.+.. .. +++.++..+.+.. +.+.+|...++.++.....++...|+|.++++..|++..+
T Consensus 252 -~~~~------~~-~~~~~~~~~~~a~---~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~---------- 310 (495)
T KOG2533|consen 252 -SPSG------GI-ENKFKWKGFKEAL---KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ---------- 310 (495)
T ss_pred -ccCC------Cc-ccccCHHHHHHHH---hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH----------
Confidence 0000 00 0112333333332 2356888999999999999999999999999855577764
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHh----hchhHHHHHhHHHHHHHH-HHhhcccccccCCCchHHHHHHHHHHHHHH
Q 009362 333 KVARHQAIFAICSTIPGYFVTVFFIDR----IGRVAIQALGFFFMGVIY-LAIGVPYSYKWSKHTNFGFMFLYALTFFFA 407 (536)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (536)
+..+.+...++++++.+++|+++|| ..+|........+..+.. ..+..... . .......+.....
T Consensus 311 --a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~-------~-~~~~~~~~~~~~~ 380 (495)
T KOG2533|consen 311 --ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAV-------L-PGAYGAFLIGPYG 380 (495)
T ss_pred --hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------c-hHHhHHHHhcchh
Confidence 3367788889999999999999999 566666555555544443 33322211 1 1111111111121
Q ss_pred hcCcccccccccccccccccc-chhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhH
Q 009362 408 NFGPNTTTFIVPAELFPARFR-STCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALL 470 (536)
Q Consensus 408 ~~~~~~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 470 (536)
.....+......++....+.| -+..+......+.+++++|.+.-... ...+++...|.
T Consensus 381 ~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~-----ap~y~~~~~f~ 439 (495)
T KOG2533|consen 381 LIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLD-----APRYGWGAVFY 439 (495)
T ss_pred hHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccccc-----CcchhhhhHHH
Confidence 222234444555555554444 34444444445555555555443321 22456677773
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=240.25 Aligned_cols=357 Identities=16% Similarity=0.184 Sum_probs=244.2
Q ss_pred HHHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 24 IAGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
..+++++.........++..|. +.+++ |+|+.+.+++.+++.+++++++++.|+++||+|||+++.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDL--------GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL 76 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHh--------CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 4556666667777888899995 88999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 103 MVLSSLACGFSI-CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
..++.+++++++ ++ +.+++.|++.|++.+ ..+....++.|++|+++|++++++...+.++|..+++.+++.+
T Consensus 77 ~~i~~~~~~~~~~~~------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 77 LAIPCLWAGLAVQSY------SVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHHHhhhH------HHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999998 86 899999999999966 4567789999999999999999999988888988888888777
Q ss_pred HHhhhcccccCCcccccccCCCCchhHHHH-HhhHHHHH-HHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccc
Q 009362 182 CKIFEATTTRDNDVNKRQHQADIAWRLILM-LGSIPAAF-TYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQI 259 (536)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~-~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (536)
........ ......+||+.|+ ..++...+ .++...+.+|+|+. ++++.+...+ . +.
T Consensus 150 ~~~~~~~~---------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~-------~~ 207 (366)
T TIGR00886 150 IGSLIFGA---------GLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG---KPATGKLSFK---G-------AR 207 (366)
T ss_pred HHHHHhcc---------cccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc---cccchhcccc---c-------cc
Confidence 65432100 0012458999994 43444333 34444566776642 1111000000 0 00
Q ss_pred cccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHH
Q 009362 260 AEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQA 339 (536)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
. ..++...+...+. .+ .+.++...+..++.....+....+.|.++++.+|+++. ..+...
T Consensus 208 ~-----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~ 267 (366)
T TIGR00886 208 W-----SVGTGALGDQLKV-FR--DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKV------------TAGAYA 267 (366)
T ss_pred c-----cccchhHHHHHHH-Hh--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH------------HHHHHH
Confidence 0 0000000011111 11 13344455555555566677888899999887888776 344556
Q ss_pred HHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccc
Q 009362 340 IFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVP 419 (536)
Q Consensus 340 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (536)
....+..+++.++++++.||+|+|+.+..+......+..++..... . ..+.+.......+...+.+. ..+..+.+.
T Consensus 268 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 343 (366)
T TIGR00886 268 SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--S-PLSLAVFIVLFVALFFFSGA-GNGSTFALV 343 (366)
T ss_pred HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHhcc-ccchhhhcc
Confidence 6667778889999999999999988777776666665555443322 0 00122222222222222332 235566777
Q ss_pred cccccccccchhhhHhHHHHHHH
Q 009362 420 AELFPARFRSTCHGISGAFGKVG 442 (536)
Q Consensus 420 ~~~~p~~~~~~~~g~~~~~~~~g 442 (536)
.+..| +++|+++|+.+..+++|
T Consensus 344 ~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 344 PHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhhch-hhcccHHHHHHHhccCC
Confidence 88887 68999999999988765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=240.17 Aligned_cols=388 Identities=11% Similarity=0.074 Sum_probs=254.8
Q ss_pred HHHHHhhhhhhcch-hhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch-hHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCI-PPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR-RRVYGLALMLM 103 (536)
Q Consensus 26 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~ 103 (536)
++.++..+...... ++..+.+.+++ |++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~--------g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTL--------HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444445555554 55566677778 9999999999999999999999999999999965 77888888888
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhh--------ccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 104 VLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMS--------EFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
.++..+..+.+++ +.+++.|++.|++.+...+...++.. |......|.+..| .+|.++++
T Consensus 80 ~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~ 147 (418)
T TIGR00889 80 ALLLFFAAQVTTP------AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAM 147 (418)
T ss_pred HHHHHHHHHhcCH------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHH
Confidence 8888888888886 88899999999988777766655432 2233234445444 46888888
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccc
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVS 255 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~ 255 (536)
.+++.+. ....|+. |++.++..++..+..+++||+|+. +++++.+..+. .+
T Consensus 148 ~l~g~l~-------------------~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~-~~----- 198 (418)
T TIGR00889 148 WAVSLLD-------------------IELSNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKMSIKVM-LG----- 198 (418)
T ss_pred HHHHHhc-------------------ccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccccCHHHH-hh-----
Confidence 8888761 2224554 445555555554455678887642 11110000000 00
Q ss_pred cccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHH
Q 009362 256 ISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVA 335 (536)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 335 (536)
.. . ....+. +.++.+.+..++..........+.+.++++ .|.++... .+......
T Consensus 199 ----------------~~-~-~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~----~~~~~~~~ 253 (418)
T TIGR00889 199 ----------------LD-A-FILFKN--KRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFA----DSFVVKNA 253 (418)
T ss_pred ----------------hh-H-HHHhcC--CCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hccccccc----chhhhhhH
Confidence 00 0 011111 223333333444333444455666777776 66554311 00011244
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccc
Q 009362 336 RHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (536)
+.......+..+++.+..++++||+|+|+++..+.++.+++..++..... ....++.+++..++.+.......+..
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888889999999999999999999999988887666655322 00112223333333333333334566
Q ss_pred cccccccccccccchhhhHhH-HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 416 FIVPAELFPARFRSTCHGISG-AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 416 ~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
..++.|.+|++.|++++|+.+ ....+|.+++|.+.|++.+..+....+||+.+|.+.+++.+++.++.+++.+|++
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 677899999999999999997 5678999999999999987654222257899999999888888888887777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=239.36 Aligned_cols=365 Identities=13% Similarity=0.087 Sum_probs=251.9
Q ss_pred HHHhhhhhhcchhhhHh-hhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMK-LLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLS 106 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 106 (536)
..++.........+.+| .+.+++ |++..+.|++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~--------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQY--------SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 34444555555555554 466778 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009362 107 SLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFE 186 (536)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 186 (536)
.++.++++++ +.++++|++.|.+.+...+...++..|..|+++|++++++.....++|.+++|.+++.+.
T Consensus 87 ~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---- 156 (395)
T PRK10054 87 FIAIPLVNNV------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---- 156 (395)
T ss_pred HHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999886 888889999998888888889999999999999999999999999999999999999884
Q ss_pred cccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCC
Q 009362 187 ATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPL 265 (536)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (536)
..+|+..|++.++..++.++ ..+++||+++. +++++++ ...
T Consensus 157 ----------------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~~~~~~~-~~~------------------ 198 (395)
T PRK10054 157 ----------------MQSINLPFWLAAICSAFPLVFIQIWVQRSEKA---IATETGS-VWS------------------ 198 (395)
T ss_pred ----------------HhccCcHHHHHHHHHHHHHHHHHHHHhccccc---cccchhh-hhh------------------
Confidence 24799999987777666543 33445554321 0100000 000
Q ss_pred CCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHh
Q 009362 266 PPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICS 345 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (536)
. +...+ .+.++......++..........+.+.+.....+... +....+.......+.
T Consensus 199 ---------~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~ 256 (395)
T PRK10054 199 ---------P-SVLLQ--DKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDF----------AEKVVAVVLPVNAAM 256 (395)
T ss_pred ---------h-hhhcc--CceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccch----------HHHHHHHHHHhhhhh
Confidence 0 00111 1233333333444333344444455555544211111 011233444555555
Q ss_pred hhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccc
Q 009362 346 TIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPA 425 (536)
Q Consensus 346 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 425 (536)
........+++.||.++|+.+..+..+..+....+..... ..+.+.+..+..+.+.....|...+.+.+..|+
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~ 329 (395)
T PRK10054 257 VVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP 329 (395)
T ss_pred eeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc
Confidence 6666778899999999999988888777777665544322 123333333344444444446667788899999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 426 RFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 426 ~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+.++++.+..+ ..++|..+||.+.|.+.| ..|+...|++.+.+..+..++..
T Consensus 330 ~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 330 GMKASYFSAQS-LGWLGAAINPLVSGVILT------TLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred ccceehHhHHH-HHHHHHHHHHHHHHHHHH------HcChhhHHHHHHHHHHHHHHHHH
Confidence 99999998755 677999999999999955 55777777776666555555544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=237.47 Aligned_cols=361 Identities=14% Similarity=0.167 Sum_probs=242.6
Q ss_pred hhhhhhcchhhhHh-hhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 009362 31 TDAYDLFCIPPIMK-LLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLA 109 (536)
Q Consensus 31 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 109 (536)
+.........+.++ .+.+++ |+|..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQL--------GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33333344445544 467788 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
+.+++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+.
T Consensus 93 ~~~~~~~------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------- 159 (400)
T PRK11646 93 MAIAHEP------WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------- 159 (400)
T ss_pred HHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9988886 889999999999999888999999999999999999999999999999999999999984
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHHH-HHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCC
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFTY-YWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPS 268 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (536)
..+||+.|++.++..++.. +..++.||.+. ++..++..+..
T Consensus 160 -------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~-------------------- 201 (400)
T PRK11646 160 -------------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STVRTPVREGM-------------------- 201 (400)
T ss_pred -------------HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cccchhhHHHH--------------------
Confidence 3479999998777665543 33345555321 10000000000
Q ss_pred CCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 009362 269 PPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIP 348 (536)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (536)
+. ..+. +.++......+...........+.|.++++ .+.++. ..+.......+..+.
T Consensus 202 -------~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~------------~~g~l~~~~~~~~~~ 258 (400)
T PRK11646 202 -------TR-VLRD--KRFVTYVLTLTGYYMLAVQVMLMLPIMVND-IAGSPS------------AVKWMYAIEACLSLT 258 (400)
T ss_pred -------HH-HHcC--chHHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcCCch------------HHHHHHHHHHHHHHH
Confidence 01 1111 122222222222222233345677888877 333433 222333333333333
Q ss_pred hHHHHHHH-HHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc
Q 009362 349 GYFVTVFF-IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF 427 (536)
Q Consensus 349 ~~~~~g~l-~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 427 (536)
+....+++ .||++.++.+..+..+.+++.+.+..... ...+.+.....+.+.....|...++..|..|++.
T Consensus 259 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~ 330 (400)
T PRK11646 259 LLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--------LQQLFTLICLFYIGSIIAEPARETLSASLADARA 330 (400)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc
Confidence 33333444 45566666666776666666655544333 2222222222223333334666788889999999
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHHHHhh
Q 009362 428 RSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 428 ~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 484 (536)
||+++|+.+....+|..+||.+.|++.|..+. .+ ...+++..+.+++++.+...
T Consensus 331 ~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 331 RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA---LNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred chhhhhHHHHHHHHHHHhcccchHHHHHHHhh---cCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875431 12 34566665666666555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=232.31 Aligned_cols=363 Identities=10% Similarity=0.005 Sum_probs=259.8
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHH----HHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVY----GLAL 100 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~ 100 (536)
+.+.++..........|.+|.+.+++ |.|.+++|++.+++.+...++++++|+++||+|||+.. .++.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~--------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGI--------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44556666666778889999999999 99999999999999999999999999999999985433 2222
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
.+..+ ..+..++++ +.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.
T Consensus 81 ~l~~~--~~~~~~~~~------~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~ 150 (382)
T TIGR00902 81 AIFAA--AFSAGAHNA------WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGG 150 (382)
T ss_pred HHHHH--HHHHhhhhH------HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 22222 233456766 8999999999999998899988888765 4788999999999999999999999999
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccc
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIA 260 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (536)
+. +..|||..|.+..+..++.++. +.++|+++. . ++++++.
T Consensus 151 l~-------------------~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~--~-~~~~~~~---------------- 191 (382)
T TIGR00902 151 LI-------------------GMFDEQNILAILTAGLAFMLIG-FLIKPTIPP--K-DAIPEDE---------------- 191 (382)
T ss_pred HH-------------------HHcChhHHHHHHHHHHHHHHHH-HHcCCCCCC--C-ccccccc----------------
Confidence 85 4457999998865543333333 333443210 0 1000000
Q ss_pred ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHH
Q 009362 261 EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAI 340 (536)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
....+...+ ..++ +.++...+..++..........+.|.++++ .|.++. ..+....
T Consensus 192 --------~~~~~~~~~-~l~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~------------~~g~l~~ 247 (382)
T TIGR00902 192 --------SQGDSAFIA-LLKN--PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISAS------------ATGLLWG 247 (382)
T ss_pred --------cccchhHHH-HHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHh------------HHHHHHH
Confidence 000001111 1111 345555555566666677778888999987 888877 3445666
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 341 FAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 341 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
...++.+++.++.+++.||+|+|+.+.++.++..+....+..... .+.+.+..++-++......+....++.
T Consensus 248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~q~l~g~~~~~~~~~~~~~i~ 319 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA--------FPLIFLLQILHCGTFAVCHLAAMRYIA 319 (382)
T ss_pred HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999988887765444 344444444444444444566677778
Q ss_pred ccccccccchhhhHhHH-HHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 421 ELFPARFRSTCHGISGA-FGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 421 ~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+. |++.++++.++++. ...+|..++|.+.|++.| ..|+ ..|++.+++++++.++..
T Consensus 320 ~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~------~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 320 AQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP------TLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred hC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccH-HHHHHHHHHHHHHHHHHH
Confidence 87 88889999999874 567899999999999965 4464 677888887777655543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=230.00 Aligned_cols=332 Identities=14% Similarity=0.069 Sum_probs=238.6
Q ss_pred cchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcc
Q 009362 37 FCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICT 116 (536)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 116 (536)
...++.+|.+.+++ |++.++.|++.+++.++..+++++.|+++||+|||+++.++.++..++.+++ .++++
T Consensus 17 ~~~~~~lp~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~ 87 (355)
T TIGR00896 17 TSVGPLLPQIRSAL--------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGT 87 (355)
T ss_pred ccCcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccH
Confidence 56688999999999 9999999999999999999999999999999999999999999988888777 66665
Q ss_pred cccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccc
Q 009362 117 TKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVN 196 (536)
Q Consensus 117 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~ 196 (536)
+.+++.|++.|++.+...+....++.|++| ++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus 88 ------~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~---------- 150 (355)
T TIGR00896 88 ------ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG---------- 150 (355)
T ss_pred ------HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 888999999999999888888889999986 689999999999999999999999888853321
Q ss_pred ccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhh
Q 009362 197 KRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLIS 276 (536)
Q Consensus 197 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (536)
.+||+.|.+.++..++... .++||.++. +++++ ..++....+.+
T Consensus 151 -------~~w~~~f~~~~~~~~~~~~--~~~~~~~~~---~~~~~-----------------------~~~~~~~~~~~- 194 (355)
T TIGR00896 151 -------GHWQQALAWWALPALLALL--AWIPQVRRR---VAANQ-----------------------TTTRLTPVRIW- 194 (355)
T ss_pred -------hhHHHHHHHHHHHHHHHHH--HHhhhhccc---cCCCC-----------------------CCCCCCCchhh-
Confidence 2499998876554443322 234443221 00000 00000011111
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009362 277 KRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356 (536)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 356 (536)
++ +.++...+..++....++....+.|.++++ .|++.. ..+.......++.++++++.+++
T Consensus 195 ----~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~------------~~g~~~~~~~~~~i~~~~~~g~l 255 (355)
T TIGR00896 195 ----RS--PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAA------------TAGSLLALMQLAQAASALLIPAL 255 (355)
T ss_pred ----cC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 11 233444444455556677788899999987 687766 44466777788899999999999
Q ss_pred HHhh-chhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc-cccccchhhhH
Q 009362 357 IDRI-GRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF-PARFRSTCHGI 434 (536)
Q Consensus 357 ~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~ 434 (536)
.||+ +||+.+..+..+.+++.+.+.+... . .... ..++.+++.....+...+...+.. +++.++...++
T Consensus 256 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 326 (355)
T TIGR00896 256 ARRVKDQRGIVAVLAVLQLVGLCGLLFAPM------H-GLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAM 326 (355)
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHhhh------h-HHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999 5666667777777666655554332 1 1111 222333343344455445544444 45677899999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccc
Q 009362 435 SGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
.+.+++++..++|.+.|++.|..+
T Consensus 327 ~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 327 AQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999976543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=233.95 Aligned_cols=381 Identities=13% Similarity=0.054 Sum_probs=229.7
Q ss_pred HHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSS 107 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 107 (536)
++..........+.+|. +.+++ |++..+.|++.+++.++..++++++|+++||+|||++++++..+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~--------g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 90 (420)
T PRK09528 19 FFFFFFIWSSWFSFFPIWLHDIN--------GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLF 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 33333333444455554 55558 9999999999999999999999999999999999999988776665544
Q ss_pred HHhhh---hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 108 LACGF---SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 108 ~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
..... ++.. ....+...++++++.|.+.....+....+..+. .+++++.++......++|..+++++++.+.+
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~- 166 (420)
T PRK09528 91 GPFFIYVFAPLL-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN- 166 (420)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-
Confidence 32211 1110 000011223344445544444444444443322 2467788888889999999999999998842
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC-CCCcchhhhhhhcHHHHHHhHHHHhccccccccccC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM-PESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEY 263 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (536)
.+|+++|++.++..++..+..++. +|.++. .+.++++. +
T Consensus 167 -------------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~----------------- 206 (420)
T PRK09528 167 -------------------INPQINFWLGSGSALILLVLLFFAKPDAPST---AKVANALG-A----------------- 206 (420)
T ss_pred -------------------cCchHhHHHHHHHHHHHHHHHhcccccccch---hhhccchh-c-----------------
Confidence 369999998887777665555444 333221 00000000 0
Q ss_pred CCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHH
Q 009362 264 PLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAI 343 (536)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
++++...+...+..++ +.++...+..+.....+.....+.|.++.+..+-.... ....+.......
T Consensus 207 --~~~~~~~~~~~~~l~~---~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~~ 272 (420)
T PRK09528 207 --NASAVSLKDALALLKL---PKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQG---------TRVFGYLNSFQV 272 (420)
T ss_pred --ccccccHHHHHHHccC---CCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---------hHHHHHHHHHHH
Confidence 0001111111111111 22222222222222333334445666665532211100 012334555566
Q ss_pred HhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc
Q 009362 344 CSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF 423 (536)
Q Consensus 344 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (536)
++.+++.++++++.||+|+|+.+..+.++.++..+++.+... .+ .++...+..+.......+....+..|.+
T Consensus 273 ~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~-------~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 344 (420)
T PRK09528 273 FLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG-------PL-EVSILKLLHAFEVPFLLVGVFKYITLNF 344 (420)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677788999999999999999988888888877776665433 22 2233333333332222344456778889
Q ss_pred cccccchhhhH-hHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 424 PARFRSTCHGI-SGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 424 p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
|++.+++..+. .++...+|.+++|.+.|++.| ..||+.+|.+.+++.++..++.++..++
T Consensus 345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~------~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD------SIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred CccceeeeeeehHHHHHHHHHHHHHHHHHHHHH------hhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988766 577788999999999999954 5578999999888887777666644443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=225.55 Aligned_cols=372 Identities=14% Similarity=0.052 Sum_probs=243.7
Q ss_pred HHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-----chhH-HHHHHH
Q 009362 27 MGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-----GRRR-VYGLAL 100 (536)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~ 100 (536)
..++..++........+|.+.++. |+|.+++|++..+... .+..+++|+++||+ |||| .+.++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~--------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~ 75 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVE--------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQ 75 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHH
Confidence 346677777778888899999998 9999999999777776 68999999999999 8876 788888
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
++.+++..+.++.+.. .+++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++..
T Consensus 76 ~~~~l~~~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 76 VGLAASIAAMAFCPPH---AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8888888877776421 1247788888888888888999999999999999999999999999999999999999888
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccccc
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIA 260 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (536)
+.+ ...|||..|++.++..++..+..+++||+++. . +++ ++..+...+
T Consensus 153 l~~------------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~--~-~~~-~~~~~~~~~---------- 200 (402)
T PRK11902 153 LAD------------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP--A-RPP-RSLGEAVVG---------- 200 (402)
T ss_pred HHh------------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--c-ccc-chhHHHHHH----------
Confidence 842 12489999999777766655555677876542 1 111 110000000
Q ss_pred ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHH-
Q 009362 261 EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQA- 339 (536)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 339 (536)
.+++ ..++ +.++..+...++..........+.+.++.+..|+++.+ .+...
T Consensus 201 -------------~~~~-l~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~------------~g~~~~ 252 (402)
T PRK11902 201 -------------PLRD-FFSR--RGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGE------------VGIVNK 252 (402)
T ss_pred -------------HHHH-HHhC--cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHh
Confidence 0111 1111 22322223222222222222223344455547777652 22333
Q ss_pred HHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHH---HHHHHHhcCcccccc
Q 009362 340 IFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYA---LTFFFANFGPNTTTF 416 (536)
Q Consensus 340 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 416 (536)
....++.+++.++++++.||+++|+.+..+..+..+..+.+...... .++.+....... +..+.......+...
T Consensus 253 ~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 329 (402)
T PRK11902 253 TLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT---PKHLWTMALAIGIENLCGGMGTAAFVALLM 329 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678889999999999999988777666655544333221110 011122222211 222333333345555
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.++.+.+|.+ ..++.+....++..+++.+.|.+. |..||...|.+.+.+++++.++.+
T Consensus 330 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~------~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 330 ALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLV------EAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHhChHHHHHHHHHHHHHHHHHHH
Confidence 6667776644 446666666778877777899884 466889899998888888777665
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=215.65 Aligned_cols=384 Identities=15% Similarity=0.104 Sum_probs=234.6
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
+....+.++|..-..++.+.+....|.+.|.|.+++.+.++.+|.++||+|||+++.++++..++..++.+.+.+|
T Consensus 46 ~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F---- 121 (451)
T KOG2615|consen 46 PFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF---- 121 (451)
T ss_pred HHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444455555433333335677889999999999999999999999999999999999999999999999999997
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccccccc
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQH 200 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (536)
..++++|++.|+..| ...+..++++|.+++|+|++.++.++..+++|.++||.+|+++..+.+.
T Consensus 122 --~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~------------- 185 (451)
T KOG2615|consen 122 --AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI------------- 185 (451)
T ss_pred --HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh-------------
Confidence 788888999999988 5677899999999999999999999999999999999999999763211
Q ss_pred CCCCchhHHHHHhhHHHHH-HHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHH
Q 009362 201 QADIAWRLILMLGSIPAAF-TYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRF 279 (536)
Q Consensus 201 ~~~~~w~~~f~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (536)
...+..-.+-++..+.+.. .....+++||+-+ .+++. ++ .....+..+.+ .+..+. +........+.+.
T Consensus 186 ~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~~-~~-~~~~~~~~~~~-~~~~~~----~~~~~v~~lrn~p 255 (451)
T KOG2615|consen 186 SGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKRN-DE-HSTLQEAADDR-LALLKF----ARIFKVAALRNPP 255 (451)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhhc-cc-ccchhhhhhhh-hhhcch----hhhhhhhhhcCcc
Confidence 1111222222333333333 4455678999844 22222 11 11111100000 000000 0000000111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 009362 280 LRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR 359 (536)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 359 (536)
..........+....+.....+.....+.+.+....+|+++.|.| -.....++.+.+....-....+|
T Consensus 256 ~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G------------~vl~~tGl~m~~~ql~~~~~l~~ 323 (451)
T KOG2615|consen 256 LLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG------------KVLSTTGLLMLVIQLALVPILPR 323 (451)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe------------eeeehhhHHHHHHHHhccccccc
Confidence 111001112223333444444445555555555566999998765 23333333333322233333444
Q ss_pred hc--hhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHH
Q 009362 360 IG--RVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGA 437 (536)
Q Consensus 360 ~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 437 (536)
.+ -+-.+..+..++.-.++++..... ...+.+...+..+......+-...+.....|+++||+++|+...
T Consensus 324 ~~~~~~a~l~~~l~~~vP~~llls~~~~--------~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~S 395 (451)
T KOG2615|consen 324 YKGNIKAVLLFSLLLIVPAFLLLSLART--------PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRS 395 (451)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcccc--------chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHH
Confidence 33 333444444444444444443333 23333444444444444446667788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHH
Q 009362 438 FGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMG 479 (536)
Q Consensus 438 ~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 479 (536)
.+.++.++||.+.|.+..+.. +-+.++...+.+.+++
T Consensus 396 l~alaRaiGPlv~g~i~~Ws~-----~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 396 LGALARAIGPLVSGVIFSWSQ-----GAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHHHHhhhhhhheeEEEec-----CCCceeeehHHHHHHH
Confidence 999999999999998876543 2233444444444444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=256.14 Aligned_cols=374 Identities=12% Similarity=-0.018 Sum_probs=247.1
Q ss_pred cchhhhHhhhhhhhccCCCCCCCCC--hhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhh--
Q 009362 37 FCIPPIMKLLGRIYYSDGADRFQIP--NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGF-- 112 (536)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-- 112 (536)
.....+.+.+..++ +.+ ....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..+
T Consensus 27 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~ 98 (1146)
T PRK08633 27 GHKILIQNTLIKAY--------DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAY 98 (1146)
T ss_pred HHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666 444 455799999999999999999999999999999999998776666655443
Q ss_pred -hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009362 113 -SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTR 191 (536)
Q Consensus 113 -~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~ 191 (536)
+.++ +.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.......
T Consensus 99 ~~~~~------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~--- 169 (1146)
T PRK08633 99 YLGWF------WLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN--- 169 (1146)
T ss_pred HHccH------HHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc---
Confidence 3454 899999999999999999999999999999999999999999999999999999999986542100
Q ss_pred CCcccccccCCCCchhHHHHHhh-HHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCC
Q 009362 192 DNDVNKRQHQADIAWRLILMLGS-IPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP 270 (536)
Q Consensus 192 ~~~~~~~~~~~~~~w~~~f~~~~-~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (536)
......+|++.+.+.. +..++.++..+.+||+|+... .+..++.......
T Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------- 220 (1146)
T PRK08633 170 -------TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAP--EVFDKKKYLFPKL-------------------- 220 (1146)
T ss_pred -------cccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCc--ccccccccccHHH--------------------
Confidence 0001123444444433 333334455566788765311 1000000000000
Q ss_pred ChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 271 QYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
....++. .. ..+.++...+..++.....+....+.|.++.+.+|++... ..+.......++.+++.
T Consensus 221 ~~~~~~~-l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----------~~g~~~~~~~ig~~~g~ 286 (1146)
T PRK08633 221 LWRNLKL-LR--SDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTF-----------QVQYLLAASAIGIGIGS 286 (1146)
T ss_pred HHHHHHH-Hh--cCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHH-----------HHHHHHHHHHHHHHHHH
Confidence 0000011 11 1123333444444444455566677888888767776540 23356666778888999
Q ss_pred HHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccch
Q 009362 351 FVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRST 430 (536)
Q Consensus 351 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 430 (536)
++.+++.||+++++.+.++.++.+++.+++.+... .+..++..++.+++.....+...+++.+..|++.||+
T Consensus 287 ~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~ 358 (1146)
T PRK08633 287 LLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS--------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGK 358 (1146)
T ss_pred HHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhh
Confidence 99999999999988888887777777666654433 2333333333444444444666788889999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHh
Q 009362 431 CHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 431 ~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 483 (536)
++|+.+++.++|.++++.+.+.+.. . .+++...+++.+.++++..++.
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSG-L----GLSPAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-h----ccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877766532 1 2244445555555544444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=221.67 Aligned_cols=357 Identities=11% Similarity=0.018 Sum_probs=239.4
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh----HHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR----RVYGLALMLMV 104 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~ 104 (536)
++......+.+.|.+|.+.+++ |.|..++|++.+++.++..++++++|+++||+||| +.+.++..+.
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~--------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~- 83 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQ--------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF- 83 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH-
Confidence 4444455677788889999999 99999999999999999999999999999999984 3333222222
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 105 LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
.......++++ +.+++.|++.|++.+...+...+++.++ +++|+++.+....+.++|.++||++++++.
T Consensus 84 -~~~~~~~~~~~------~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~-- 152 (382)
T PRK11128 84 -AVAFWFGAHSF------WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV-- 152 (382)
T ss_pred -HHHHHHhcccH------HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH--
Confidence 12223334555 8888999999999999999888888877 356888899899999999999999999994
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYP 264 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (536)
+..|||..|++.++..++..+..++.||.++. +++ ++..
T Consensus 153 -----------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~------------------- 191 (382)
T PRK11128 153 -----------------SWFGEQAILWILTAGVASMLLGQLLRPTIMPQ----GES-RQQE------------------- 191 (382)
T ss_pred -----------------HHcChhHHHHHHHHHHHHHHHHHHccCCCCCc----ccc-cccc-------------------
Confidence 44589999988766554444444445553221 000 0000
Q ss_pred CCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 009362 265 LPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAIC 344 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (536)
+ +..+.+++ ..+ .+.++......++..........+.|.++++ .|.++.+ .+.......+
T Consensus 192 ---~-~~~~~~~~-i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~------------~g~~~~~~~~ 251 (382)
T PRK11128 192 ---S-AGWPAWKA-LLK--EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSAST------------IGYLWSLGVV 251 (382)
T ss_pred ---c-cccchHHH-HHc--ChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhH------------HHHHHHHHHH
Confidence 0 00001111 111 1344544554555455555666777888876 7777652 3345556667
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP 424 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 424 (536)
+.++..++.+++.||+++|+.+..+..+.++..+++..... .+.+++..++.++......+....+..+. +
T Consensus 252 ~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~ 322 (382)
T PRK11128 252 AEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA--------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-P 322 (382)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 88888899999999999999999888888887766654332 23333333333333333345555666666 4
Q ss_pred ccccchhhhHhH-HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 009362 425 ARFRSTCHGISG-AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAI 482 (536)
Q Consensus 425 ~~~~~~~~g~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 482 (536)
++++++..++.+ ....+|..++|.+.|.+.| ..|+ ..++..+++.+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~------~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 323 GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ------HLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccH-HHHHHHHHHHHHHHHH
Confidence 555788888886 4456677899999999965 4454 4666666666655443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=254.12 Aligned_cols=347 Identities=13% Similarity=0.057 Sum_probs=238.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH---HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCc
Q 009362 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL---ALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGD 139 (536)
Q Consensus 63 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 139 (536)
...++..+++.+.++++++++|+++||+|||+++.. ..++..+..+.....+++ +.++++|+++|++.+..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~------~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSV------PLLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHhh
Confidence 557888999999999999999999999999997633 222333333333334665 99999999999999999
Q ss_pred chhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHH
Q 009362 140 YPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 140 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
.|+..+++.+++|+++|++++++.+++.++|.++||++++++. ...+|++.|+..++..++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-------------------~~~~~~~~~~~~~~~~~~ 186 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-------------------ISGNFVILVALLMGIAVL 186 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-------------------hccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 345799999666666666
Q ss_pred HHHHHHcCCCCcchhhhhhhcHH-HHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHH
Q 009362 220 TYYWRMTMPESARYTALVEQNVM-QAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVD 298 (536)
Q Consensus 220 ~~~~~~~~~esp~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (536)
.++..+++|+++.. ..+.+.+ ...+.... .+ +.. +..+.++...+..+...
T Consensus 187 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------------------~~-~~~--~~~~~~~~~~~~~~~~~ 238 (1140)
T PRK06814 187 GWLASLFIPKTGNA--APDLKIDRNIIRSTIT-----------------------LL-KYA--KADKRIWLAILGISWFW 238 (1140)
T ss_pred HHHHHhhCCCCCCC--CCCCeeccchHHHHHH-----------------------HH-HHH--hcCchHHHHHHHHHHHH
Confidence 66666677776431 0000000 00000000 00 111 11234555555555555
Q ss_pred HHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHH
Q 009362 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYL 378 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 378 (536)
+.......+.|.|+.+.+|.++. ..+.......++.++|.++.+++.|+..+++.+..+.++.+++.+
T Consensus 239 ~~~~~~~~~~p~~~~~~~g~~~~------------~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 306 (1140)
T PRK06814 239 LVGAVVLSQLPLLAKETLGGDEN------------VATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGL 306 (1140)
T ss_pred HHHHHHHHHhHHHHHHHcCCchH------------HHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHH
Confidence 66667778899999987888776 455677788889999999999999887776666555555555444
Q ss_pred Hhhccccc-c------------cCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 379 AIGVPYSY-K------------WSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 379 ~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
.+.+.... . ......+ .+.+..++.+++.....+...+++.+..|++.+|+++|+.+++..++..+
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i 385 (1140)
T PRK06814 307 DLAFASSSVPAEPAQLKSILVFLSKRHGW-RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA 385 (1140)
T ss_pred HHHhcccccccccccccchhhhhcccccH-HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence 33332000 0 0001122 23333333444444445667788899999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHH
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGF 480 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 480 (536)
++.+.+.+.+. ..++...+++.+.+.++..
T Consensus 386 g~~~~g~l~~~-----~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 386 GTIILALLQAL-----GFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHH
Confidence 99999988532 2345555555554444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=215.82 Aligned_cols=366 Identities=10% Similarity=0.052 Sum_probs=231.9
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhh-hHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAV-VSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
.+++..+.+|.++++.. -+...+.+.|.+.+|+ |+|.+| .|.+.++++.+++++.++.|+++||+|.|+
T Consensus 24 ~W~~~~~~lC~fGF~~e--~R~n~s~a~p~L~~el--------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~ 93 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQ--FRPGESFITPYLLTVL--------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP 93 (511)
T ss_pred chhHHHHHHHHHHHHHH--hhchHHHHHHHHHHHc--------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 44445555565555543 3778888999999999 999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
++.++.+.+++.+++.++++++ ..+.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|.+++
T Consensus 94 vL~l~~l~Wsl~t~L~~fa~Sl------~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia 166 (511)
T TIGR00806 94 VLVLQALSFVCVWLLLLLGTSV------WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLS 166 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHH---hhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHH
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILML---GSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKV 251 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~---~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~ 251 (536)
+++++++. ..|||+.+.+ ......+.+++.+++|..++-+--++++..+ +.
T Consensus 167 ~~L~qll~--------------------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~--~~---- 220 (511)
T TIGR00806 167 SVLGQLLV--------------------TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR--GA---- 220 (511)
T ss_pred HHHHHHHH--------------------hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc--cc----
Confidence 99999852 3478876654 3333444566677888655532111111000 00
Q ss_pred hccccccccccCC--CCC-CC----CChhhhhHHHhh-hhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCc
Q 009362 252 LDVSISQIAEEYP--LPP-SP----PQYPLISKRFLR-RHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQ 323 (536)
Q Consensus 252 ~~~~~~~~~~~~~--~~~-~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 323 (536)
...+.++...... ..+ .+ .....+...... -..+.++...+=+.+...+++-+..|....-++.-+-.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yN 300 (511)
T TIGR00806 221 LPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYN 300 (511)
T ss_pred cccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccC
Confidence 0000000000000 000 00 001111111111 111233444444555556666666666666555212111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh--HHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHH
Q 009362 324 TRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV--AIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYA 401 (536)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (536)
| ..-++..+.+.+..+..|++-.++.+- ..+.+..++.+.+++++....+ .|...+.+.
T Consensus 301 G------------~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~-------Iw~~Y~~yv 361 (511)
T TIGR00806 301 G------------AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHD-------IWVLYVTYV 361 (511)
T ss_pred C------------HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccc-------hHHHHHHHH
Confidence 1 233333444555667788876555442 3334444444545555444433 344444445
Q ss_pred HHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 402 LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
++...+.... ++...-+++....+.-|...|+.+++.-+-..
T Consensus 362 lf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQt 403 (511)
T TIGR00806 362 LFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKT 403 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHH
Confidence 5544444443 55555555666667678888888776544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=233.67 Aligned_cols=409 Identities=13% Similarity=0.116 Sum_probs=304.3
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
-..+.|.+++..++..+...--...++...+.+++++ +-+..+++|+.++......+.+++.+.+.||+|.|
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f--------~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R 111 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYF--------GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR 111 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHh--------CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch
Confidence 4557788888888877666666667778899999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILA 173 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i 173 (536)
++.+.|.++..++.++.++++++ +..++..-++.|+|.|..+......+..+++ |+|+.+.|+...+.++|..+
T Consensus 112 ~v~i~G~~v~~~g~~lssF~~~i-----~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~ 185 (509)
T KOG2504|consen 112 TVMIAGGLVAALGLLLSSFATSL-----WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVV 185 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceee
Confidence 99999999999999999999997 4455556799999999999999999998886 88999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH-cCCCCcchhhhhhhcHHHHHHhHHHHh
Q 009362 174 SSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM-TMPESARYTALVEQNVMQAAKDMEKVL 252 (536)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~~~~~~~~~~~ 252 (536)
-|.+...+. +..|||+.+++.+.+.+-.++... .-|.+++. ++. .++..+......
T Consensus 186 ~~~l~~~l~-------------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~-~~~~~~~~~~~~ 242 (509)
T KOG2504|consen 186 FPPLLKYLL-------------------SKYGWRGALLIFGGISLNVLVAGALLRPLSPPK---KPN-EEKDLRNSAASV 242 (509)
T ss_pred HHHHHHHHH-------------------HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cch-hhhhhccccccc
Confidence 999988885 556899999987666655544443 34434332 111 111111100000
Q ss_pred cccc------------cccc----ccCCCCCCCC-----C-hhhh---hHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 009362 253 DVSI------------SQIA----EEYPLPPSPP-----Q-YPLI---SKRFLRRHGRDLFACATSWLLVDIVFYSSNLF 307 (536)
Q Consensus 253 ~~~~------------~~~~----~~~~~~~~~~-----~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (536)
.... .... .....++.+. . ...+ .....+. +.++.+.+...+...+++....+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~ 320 (509)
T KOG2504|consen 243 ESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVY 320 (509)
T ss_pred cccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 0000000000 1 1111 1222222 56777777788888899999999
Q ss_pred hhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhhcccc
Q 009362 308 QSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIG--RVAIQALGFFFMGVIYLAIGVPYS 385 (536)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~ 385 (536)
+|.+..+ .|++.. .+.....+..+..++++++.|++.|+.. ++.+..++.++.+++.+.+.....
T Consensus 321 l~~~~~~-~g~~~~------------~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~ 387 (509)
T KOG2504|consen 321 LPSYAKS-LGLSSN------------DAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT 387 (509)
T ss_pred HHHHHhh-cCCChh------------hhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999987 888887 4557788888999999999999999977 455566666666666655555544
Q ss_pred cccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccccccccc
Q 009362 386 YKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGV 465 (536)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~ 465 (536)
+..++..+++.++...........++.|+.+.+.-..+.|+...+..++..+||++.|++.|.++ .|
T Consensus 388 --------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-----~Y 454 (509)
T KOG2504|consen 388 --------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-----NY 454 (509)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-----Ce
Confidence 45556666666666555556666688999999999999999999999999999999999977665 38
Q ss_pred chhhHHHHHHHHHHHHHhheeec
Q 009362 466 TIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
...|+..+.+.+++..+.+ ..+
T Consensus 455 ~~~f~~~g~~~~~s~~~~~-~~~ 476 (509)
T KOG2504|consen 455 DHAFYFCGLCFLLSAVLLL-ILR 476 (509)
T ss_pred eeehhhcChHHHHHHHHHH-HhH
Confidence 8899999988888887766 444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=203.54 Aligned_cols=388 Identities=13% Similarity=0.030 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 98 (536)
...+..+...+++.++......+++|.+.+.+ +++..|.+++..+++.|+.+++++.|++.+|+|+|+.+++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f--------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l 83 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVF--------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL 83 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence 34556666677888999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---hhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLSSLACG---FSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 99 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
|+.+++++..+.. ...+| ..++++-++.|.|.+...+.++.+++...++++..+.+++.+..+++|.+++|
T Consensus 84 gL~l~avg~~lF~pAa~~~~y------~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 84 GLLLYAVGAALFWPAASSKSY------GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred HHHHHHHHHHHHhhhhhhhhH------HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999985 34444 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH--cCCCCcchhhhhhhcHHHHHHhHHHHhc
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM--TMPESARYTALVEQNVMQAAKDMEKVLD 253 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~--~~~esp~~l~~~~~~~~~~~~~~~~~~~ 253 (536)
++++.++..-...+-.+.-.+.........||++|...+...+++.+... ..|+.+.. .+++.
T Consensus 158 ~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~---~~~~~------------ 222 (422)
T COG0738 158 LLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA---APSLG------------ 222 (422)
T ss_pred HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc---ccccc------------
Confidence 99999875200000000000000001123488888876666555544433 23433221 00000
Q ss_pred cccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHH
Q 009362 254 VSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFK 333 (536)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 333 (536)
++... ........+.+....+..|+......+...|.+.|+.+..|.+..
T Consensus 223 --------------~~~~~----~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~------------ 272 (422)
T COG0738 223 --------------ASGSA----GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQ------------ 272 (422)
T ss_pred --------------ccccc----hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHH------------
Confidence 00000 001111123456677778888888899999999999986666655
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+.........+.++|++++.++..|+...+.+.....+..+.++...+... ...+ ...+..++++...+|
T Consensus 273 ~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g--------~v~~-~~l~~ig~F~simfP 343 (422)
T COG0738 273 QAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG--------VVAL-YALFLIGLFNSIMFP 343 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC--------hHHH-HHHHHHHHHhHHHHH
Confidence 5667788888999999999999999999999888877776666666655554 2222 333334445555569
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAI 482 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 482 (536)
..++...+..| ++...+ |....+.-.|+++.|++.|++.| ..|....+.....+|.+..++
T Consensus 344 TIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d------~~g~~~~~~~~pllc~lyV~~ 404 (422)
T COG0738 344 TIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIAD------MFGIQLTFLIVPLLCYLYVLF 404 (422)
T ss_pred HHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHH
Confidence 99999999998 434444 44445567899999999999965 445555655555555555533
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=222.28 Aligned_cols=377 Identities=15% Similarity=0.090 Sum_probs=269.7
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
.+++.+...+...+.....+.+..+. .-|+...+++..+..+...+.++++|.++||+.|||+++.+.++.+
T Consensus 15 lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~ 86 (524)
T PF05977_consen 15 LWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRA 86 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 33445555555555667777777777 7899999999999999999999999999999999999999998887
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 105 LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
+..++.++.... ...+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.++|.+...
T Consensus 87 ~~~~~L~~l~~~-~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 87 LVALLLAVLAFF-GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF 165 (524)
T ss_pred HHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 766555443221 1123488999999999999999999999999999999999999999999999999999999999755
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYP 264 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (536)
. |-.+.|.+.++.-++.+..+...+..++ .++...+.-.+.++.-
T Consensus 166 ~-------------------G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G------------- 210 (524)
T PF05977_consen 166 F-------------------GAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREG------------- 210 (524)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHH-------------
Confidence 4 3567788766655554444443432221 1111111111111110
Q ss_pred CCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 009362 265 LPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAIC 344 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (536)
-.+.+. .+.+.......+..+.........+|.+.++.+|.++.. -++.....++
T Consensus 211 ------------~ryv~~-~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~------------yGll~a~~gv 265 (524)
T PF05977_consen 211 ------------LRYVRS-SPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASG------------YGLLLAAFGV 265 (524)
T ss_pred ------------HHHHhc-chHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHH------------HHHHHHHHHH
Confidence 011111 112222222233333333444566788888878877763 3477788889
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP 424 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 424 (536)
+.++|.++.+++.+|+++++++..+.++.+++++.+++... .+...+..+..+++.........+...+..|
T Consensus 266 Gai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~--------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P 337 (524)
T PF05977_consen 266 GAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS--------FWLALIALFLAGAAWIIANSSLNTLVQLSVP 337 (524)
T ss_pred HHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888888888888877776655 3333444444455555555666778889999
Q ss_pred ccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 425 ARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 425 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++.||++++++.+....+..+|..+.|.+.+ ..|...++.+.++..+++.++.+
T Consensus 338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~------~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD------HFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999954 56777888777766666665554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=223.90 Aligned_cols=348 Identities=12% Similarity=0.108 Sum_probs=236.0
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc----cchhH-HHHHHHHHHHHHHHHhhhhhc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL----IGRRR-VYGLALMLMVLSSLACGFSIC 115 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~ 115 (536)
...+.+.+++ |+++.++|++.++..+..++..++.|+++|| +|||| .++++....+++.+++...++
T Consensus 21 ~l~~~~~~~~--------g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 21 YLLFFYTDVL--------GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred HHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 3455667777 9999999999999999999999999999997 68855 677888888888888877765
Q ss_pred ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFA-NKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 116 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
......+..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+...++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~------- 165 (437)
T TIGR00792 93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG------- 165 (437)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 422223467788889999998888888888999987 468999999999999999998888887777654331
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChh
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYP 273 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (536)
..+..+||+.+.+.+++.++..+ ..++.+|+++. .+.+ ++. +.+..+
T Consensus 166 -----~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~---~~~~-~~~-----------------------~~~~~~ 213 (437)
T TIGR00792 166 -----GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE---IPKN-IEK-----------------------KLSLKQ 213 (437)
T ss_pred -----CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC---CCcc-ccc-----------------------CCCHHH
Confidence 12356899999988877766544 34556765421 0000 000 000011
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 009362 274 LISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVT 353 (536)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (536)
.++. .. +.+.++......++.....+....+.+.+.+...+ ++. ..........++.+++.++.
T Consensus 214 ~~~~-l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~i~~ii~~~~~ 277 (437)
T TIGR00792 214 IFKA-LF--KNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPE------------LFSYMGSIAIVAGLIGVLLF 277 (437)
T ss_pred HHHH-Hh--CCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChH------------HHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 11334444444444444555444455555544333 111 22234455678888899999
Q ss_pred HHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc-------cc
Q 009362 354 VFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP-------AR 426 (536)
Q Consensus 354 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~ 426 (536)
+++.||+|+|+.+..+..+.+++.+.+.+... ..+...+..++.+++.....+..+++.+|..+ ++
T Consensus 278 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (437)
T TIGR00792 278 PRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVR 350 (437)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcc
Confidence 99999999999998888877777666544322 12222333333334433345667777777754 56
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 427 FRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 427 ~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
.+|.+.|+.+....+|..+++.+.|.+.+..|
T Consensus 351 ~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 351 AEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999987655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=218.07 Aligned_cols=379 Identities=13% Similarity=0.088 Sum_probs=241.4
Q ss_pred HHHHHhhhhhhcchhhhHhhh-hhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCIPPIMKLL-GRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
....++.......+.+.+|.. .+++ |.++.+.|++.+++.++..+++++.|+++||+|||+.++.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 8 GLFFFLYFFIMSAYFPFFPIWLHDVN--------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 334445555555666666654 5567 9999999999999999999999999999999999999988777665
Q ss_pred HHHHHhh---hhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 105 LSSLACG---FSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 105 ~~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
++..... +.+.. ....+..+++.|++.|++.+...+....+..|..+ +++...+......++|.++++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 80 VLFAPFFIYVFGPLL-QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhh
Confidence 5443321 11100 00012456778999999999888888888877543 345677777788899999999999877
Q ss_pred HHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHc-CCCCcchhhhhhhcHHHHHHhHHHHhcccccccc
Q 009362 182 CKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMT-MPESARYTALVEQNVMQAAKDMEKVLDVSISQIA 260 (536)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (536)
. ..+||.+|++.++..++..+..++ .||+|+. + +.+++.+
T Consensus 157 ~--------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~-------------- 197 (396)
T TIGR00882 157 F--------------------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS----A-TVANALG-------------- 197 (396)
T ss_pred h--------------------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh----h-hhhcccc--------------
Confidence 2 347999999988777765544444 3443321 0 0000000
Q ss_pred ccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHH
Q 009362 261 EEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAI 340 (536)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 340 (536)
.++++.+.+...+.. +. +.++......+.....+.....+.+.|+++..+.... + ....+....
T Consensus 198 ----~~~~~~~~~~~~~~l-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~--~-------~~~~g~~~~ 261 (396)
T TIGR00882 198 ----ANASAFSLKLALELF-RQ--RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQ--G-------TRVFGYVTT 261 (396)
T ss_pred ----cccCCCCHHHHHHHH-cC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--c-------hHHHHHHHH
Confidence 000001111111211 11 2333333344444444444555667777664421111 0 012334555
Q ss_pred HHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 341 FAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 341 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
...+...++.+..+++.||+|||+.+.++..+.++...+...... .+.. .+..+..+............+..
T Consensus 262 ~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~-------~~~~-~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 262 MGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT-------ALEV-VILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC-------hHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778889999999999999998888877776665544332 2222 33333333332222233344566
Q ss_pred ccccccccchhhhH-hHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 421 ELFPARFRSTCHGI-SGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 421 ~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+..|++.++++.+. .+....+|+++++.+.|++.| ..|++.+|.+.+++.++..+...
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~------~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD------SIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH------hcccHHHHHHHHHHHHHHHHHHH
Confidence 77788888887776 678899999999999999955 55789999998888877766554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=218.73 Aligned_cols=342 Identities=12% Similarity=0.040 Sum_probs=232.5
Q ss_pred hcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-----chhHH-HHHHHHHHHHHHHH
Q 009362 36 LFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-----GRRRV-YGLALMLMVLSSLA 109 (536)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~ 109 (536)
....++..|.+.+|+ |+|.+++|+.... .+...+ .+++|+++||+ ||||. ++.+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 4 LGLVGNTLPYWLRSK--------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI 73 (356)
T ss_pred chhHHhHHHHHHHHc--------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 345678899999999 9999999999755 455555 89999999998 89996 56777777777777
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
.++..+. .+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+.+
T Consensus 74 l~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~- 149 (356)
T TIGR00901 74 LSFLVPS---TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN- 149 (356)
T ss_pred HHcCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-
Confidence 7776432 124667778888899888889999999999999999999999999999999999999998886443310
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH-cCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCC
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM-TMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPS 268 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (536)
....++||..|++.++..++..+..+ ..||+++. ++.++++ .+...+
T Consensus 150 ----------~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~-~~~~~~------------------ 197 (356)
T TIGR00901 150 ----------TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKPL-TQAVLK------------------ 197 (356)
T ss_pred ----------cccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchhH-HHHHHH------------------
Confidence 12345699999998887776655444 35664331 0111010 000000
Q ss_pred CCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 009362 269 PPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIP 348 (536)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (536)
.++....++..+.++...+..++.....+....+.|.++.+ .|+++.+ .+........++.++
T Consensus 198 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~-----------~g~~~~~~~~~~~~~ 260 (356)
T TIGR00901 198 -----PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEE-----------IALVAKINGLLGAIL 260 (356)
T ss_pred -----HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH-----------HHHHhHHHHHHHHHH
Confidence 00111111111234445555555667777888899999988 8887663 222333334456778
Q ss_pred hHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccccc---CCCchHHHHHHHHHHHHHHhcCccccccccccccccc
Q 009362 349 GYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKW---SKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPA 425 (536)
Q Consensus 349 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 425 (536)
+.++++++.||+|||+.+..+.++.++...++.+...... ......+.+....++..+......+...++..|.+|+
T Consensus 261 g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 340 (356)
T TIGR00901 261 GGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP 340 (356)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 8999999999999999888888877776655443321000 0001223333333343444444567788999999999
Q ss_pred cccchhhhHhHHHHH
Q 009362 426 RFRSTCHGISGAFGK 440 (536)
Q Consensus 426 ~~~~~~~g~~~~~~~ 440 (536)
++||+.+|+.++..+
T Consensus 341 ~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 341 KFGATQMALLSSLSA 355 (356)
T ss_pred CccHHHHHHHHHHHh
Confidence 999999999887654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=216.98 Aligned_cols=422 Identities=14% Similarity=0.102 Sum_probs=263.6
Q ss_pred HHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVL 105 (536)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~ 105 (536)
++.....++.....+.+++.+..|+ |-+ ....|+.+...++.+++.++.|+++|.||||..++.+.++..+
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~di--------G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv 120 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADI--------GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV 120 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhc--------CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Confidence 3334444555566677788899998 654 6778999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009362 106 SSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIF 185 (536)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 185 (536)
|.++++.++|. ..++++..+.|+|.|... .....++|..|.|.|+...++...........++.++..+
T Consensus 121 G~Iv~atA~~~------~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~---- 189 (599)
T PF06609_consen 121 GSIVCATAQNM------NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF---- 189 (599)
T ss_pred HHHHhhcCCcH------HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh----
Confidence 99999999997 999999999999977655 4566689999999998877766655545445566666554
Q ss_pred hcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH--HcCCCCcchhhhhhhcHHHHHHhHHHHh-----------
Q 009362 186 EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR--MTMPESARYTALVEQNVMQAAKDMEKVL----------- 252 (536)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~--~~~~esp~~l~~~~~~~~~~~~~~~~~~----------- 252 (536)
..+.+|||.|++..+...+.++.. +..|.+.+.+..++..+.+..++++.+-
T Consensus 190 ---------------~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~Lf 254 (599)
T PF06609_consen 190 ---------------AAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALF 254 (599)
T ss_pred ---------------ccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345689999999887766654333 2333322211011111222233322211
Q ss_pred --ccccccc-cccCCC--------------------CCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 009362 253 --DVSISQI-AEEYPL--------------------PPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQS 309 (536)
Q Consensus 253 --~~~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (536)
+.+.... ...-+. |......+.+.+..+.+..|.+...++..+.....+++...+.|
T Consensus 255 Llgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p 334 (599)
T PF06609_consen 255 LLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWP 334 (599)
T ss_pred HHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000 00000001011111112234566666677777777888888888
Q ss_pred HHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch-hHHHHHhHHHHHHHHHHhhccccccc
Q 009362 310 KIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR-VAIQALGFFFMGVIYLAIGVPYSYKW 388 (536)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (536)
......++-++.... ..+.......++..+|.++.+.+..+++| |+.++++..++.++..++.....
T Consensus 335 ~~~~~vf~~d~~~~~---------~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~--- 402 (599)
T PF06609_consen 335 QQVVNVFGSDPISIT---------EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP--- 402 (599)
T ss_pred HHHhhhccCCCcccc---------eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC---
Confidence 887775665553211 12244555666777788888999988876 55556776666665555544433
Q ss_pred CCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccc-----------
Q 009362 389 SKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDD----------- 457 (536)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~----------- 457 (536)
++.+..+ .+.++.+++...........+.-..|++.-+++.|+..+++.+|+.++..++..+....
T Consensus 403 ~n~~~~i---~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~ 479 (599)
T PF06609_consen 403 DNKNAAI---AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAP 479 (599)
T ss_pred CCcchHH---HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 1111111 22222222222222344455566788999999999999999999999988776554320
Q ss_pred -----c----------------c------------------------ccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 458 -----N----------------K------------------------VNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 458 -----~----------------~------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+ . .-..+++++|+....+..++.+..+ ++++.++
T Consensus 480 a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~-fl~d~~~ 558 (599)
T PF06609_consen 480 AALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAAL-FLGDIDK 558 (599)
T ss_pred HHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChHH
Confidence 0 0 0014677788888888888888877 7776654
Q ss_pred cchhhc
Q 009362 493 RSLEEN 498 (536)
Q Consensus 493 ~~~~~~ 498 (536)
.-.+++
T Consensus 559 ~mt~hV 564 (599)
T PF06609_consen 559 YMTNHV 564 (599)
T ss_pred hhccch
Confidence 433333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=233.64 Aligned_cols=404 Identities=13% Similarity=0.108 Sum_probs=267.7
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
+..++..+......+..+.+++.+.++| +++..+.|++.+.+.++++++.++.++++||+|||+++.+++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F--------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll 107 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRF--------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAI 107 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhh--------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHH
Confidence 3344566777777888899999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccc------------------------------------------c---cchhhHHHHHHHHHhhhcc
Q 009362 103 MVLSSLACGFSICTT------------------------------------------K---QCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 103 ~~~~~~~~~~~~~~~------------------------------------------~---~~~~~~l~~~r~l~G~~~g 137 (536)
++++++++++.+-.. . ...+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 999999998764000 0 0124678899999999999
Q ss_pred CcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCcccccccCCCCchhHHHHHhh
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTT---RDNDVNKRQHQADIAWRLILMLGS 214 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~w~~~f~~~~ 214 (536)
..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+...+... .+...++.++.-..+||..|++.+
T Consensus 188 ~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g 267 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG 267 (633)
T ss_pred cchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865432100 001111222211124888898888
Q ss_pred HHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhh-hHHHhhhhhhhHHHHHHH
Q 009362 215 IPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLI-SKRFLRRHGRDLFACATS 293 (536)
Q Consensus 215 ~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (536)
++.++..+.++++|+..+. ..++.+.+..+. +.. .. .+ +. ...+.......+ .....-...+.++...+.
T Consensus 268 ~l~~l~~v~l~~~p~~lp~--~~~~~~~~~~~~-~~~-~~--~~--~~-~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~ 338 (633)
T TIGR00805 268 GVALLTSIPFFFFPKALPK--EGKRVNVDVHET-EKL-EK--SE--DK-SRKKNSDITKDFPKIIKRLLCNPIYMLVILA 338 (633)
T ss_pred HHHHHHHHHHHhCccccCC--cccccchhhhhh-hcc-cc--cc--cc-cchhhhhhHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7777765556667665321 101000000000 000 00 00 00 000000011111 111111223567777777
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHhhc--hhHHHHHhH
Q 009362 294 WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAI-CSTIPGYFVTVFFIDRIG--RVAIQALGF 370 (536)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g--rr~~~~~~~ 370 (536)
.++....++++..|+|.|+++++|+++.+ ++....... .+.++|.+++|+++||++ .|+.+..+.
T Consensus 339 ~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~ 406 (633)
T TIGR00805 339 QVIDSLAFNGYITFLPKYLENQYGISSAE------------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAI 406 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHH------------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHH
Confidence 78888888999999999999989998773 334443333 356788999999999987 456666666
Q ss_pred HHHHHHHHHhhc---c-----------------------c-cc----------------------------c--------
Q 009362 371 FFMGVIYLAIGV---P-----------------------Y-SY----------------------------K-------- 387 (536)
Q Consensus 371 ~~~~~~~~~~~~---~-----------------------~-~~----------------------------~-------- 387 (536)
++..++.+.... . . .. +
T Consensus 407 ~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~ 486 (633)
T TIGR00805 407 CLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTG 486 (633)
T ss_pred HHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCC
Confidence 665555433110 0 0 00 0
Q ss_pred ----cC------------------C---Cc-hHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHH
Q 009362 388 ----WS------------------K---HT-NFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV 441 (536)
Q Consensus 388 ----~~------------------~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 441 (536)
.. . .. ....++++.+...+......|. ..+.-+.+|+++|+.+.|+...+.++
T Consensus 487 ~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~-~~i~lR~V~~~~rs~alg~~~~~~rl 565 (633)
T TIGR00805 487 SNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPL-YMVLLRVVNPEEKSLAIGLQWLCMRV 565 (633)
T ss_pred CcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCch-heEEeeccCcccchHHhhHHHHHHHH
Confidence 00 0 00 1122222233333333333344 45667889999999999999877665
Q ss_pred -HHHHHHHHHHhhhcc
Q 009362 442 -GAIIGTVAFLWASHD 456 (536)
Q Consensus 442 -g~~~~~~~~~~l~~~ 456 (536)
|.+-+|+++|.+.|.
T Consensus 566 lg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 566 FATIPAPILFGLLIDV 581 (633)
T ss_pred hcCCChhHHHhhhhhc
Confidence 889999999999775
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=219.09 Aligned_cols=422 Identities=10% Similarity=0.028 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHhhhhhhcchhh-hHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHH
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPP-IMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVY 96 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~ 96 (536)
++.+..+++..+...+..+.+.. +...+.+++ |++.++.+++.+.+.....+..+++|+++|| +||||++
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l--------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQL--------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 34444455555555555544444 445567778 9999999999999998988999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcc--cchhHHHHHHHHHHHHHHHH
Q 009362 97 GLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKM--TRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~i~ 174 (536)
+++.+++++++++++++.+. ...++++|+++|+|.|...+...+++.|.+|++ +|++++++++.+.++|.++|
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~-----~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLK-----PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 99999999999999998764 134568999999999999999999999999877 45789999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhh-hhhhcHHHHHHhHHH---
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA-LVEQNVMQAAKDMEK--- 250 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~-~~~~~~~~~~~~~~~--- 250 (536)
|.+++++. +..|||+.|++.++..++.++.+...++..+... ..++++.+......-
T Consensus 160 ~~l~g~l~-------------------~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~ 220 (489)
T PRK10207 160 LSLAPVIA-------------------DKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLG 220 (489)
T ss_pred HHHHHHHH-------------------HhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHH
Confidence 99999994 4458999999865544433333333332211100 000101111010000
Q ss_pred ----Hhc----ccccccccc------------CCCCCCCCChhhhhHHHhhhhhhhHHH--HHHHHHHHHHHHHhhhhhh
Q 009362 251 ----VLD----VSISQIAEE------------YPLPPSPPQYPLISKRFLRRHGRDLFA--CATSWLLVDIVFYSSNLFQ 308 (536)
Q Consensus 251 ----~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 308 (536)
... .+....... --.++.+.+ +. .|+ |.+.. +++........+.......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~-~~-----~r~--r~~~~~~l~~~~~~f~~~~~q~~~~l 292 (489)
T PRK10207 221 SVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD-KT-----GRN--KMFVAFVLMLEAVVFYILYAQMPTSL 292 (489)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC-HH-----HHH--HHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 000 000000000 000000000 11 111 11111 1111222333344444556
Q ss_pred hHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH-------HHHHhHHHHHHHHHHhh
Q 009362 309 SKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA-------IQALGFFFMGVIYLAIG 381 (536)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~ 381 (536)
+.+.++..+.+ ..|... ... .......+..++..++.+++.||+++|+ .+.+|.++.+++++.+.
T Consensus 293 ~l~~~~~~~~~--~~G~~i-----~~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 293 NFFAINNVHHE--ILGFSI-----NPV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HHHHHHhcccc--ccceEE-----CHH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 66655322221 111100 011 1222233445456667789999999886 36677777776665432
Q ss_pred ccc--ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 382 VPY--SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 382 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
... ........+.+.++...++.+.+.....+...+++.+..|++.++.++|+.+...++|+.++..+..........
T Consensus 365 ~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~ 444 (489)
T PRK10207 365 AAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNI 444 (489)
T ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 110 000111223344455556666777777788889999999999999999999999999999998888655321110
Q ss_pred ccc----cccchhhHHHHHHHHHHHHHhheeec
Q 009362 460 VNA----TGVTIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 460 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
.|. -.+...|...++.++++.++.+...|
T Consensus 445 ~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 445 TDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12456777777777766666653333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=218.47 Aligned_cols=409 Identities=11% Similarity=0.056 Sum_probs=256.7
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhh-hh--hccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLG-RI--YYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVYGL 98 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~ 98 (536)
..+.+..+.+.+..+...+.+|.+. ++ + |++..+.|++.+.+.++..++++++|+++|| +|||+++.+
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l--------g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGL--------GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 3334455555555555556666554 44 6 9999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCccc---chhHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMT---RGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---rg~~~~~~~~~~~~G~~i~~ 175 (536)
+.++.+++.++.++++++ +.++++|++.|++.|...+...++++|++|+++ |+++.++.+.+.++|.++|+
T Consensus 85 ~~~~~~~g~~~~~~~~~~------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~ 158 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYP------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP 158 (475)
T ss_pred HHHHHHHHHHHHHhcccH------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence 999999999999988875 788899999999999999999999999998754 88899999999999999999
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCC----CCcchhhhhhhcHHH--HHHhHH
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMP----ESARYTALVEQNVMQ--AAKDME 249 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~----esp~~l~~~~~~~~~--~~~~~~ 249 (536)
++++.+. +..|||+.|.+.++..++..+.+.+.+ +.|+. .++.+.++ ..+...
T Consensus 159 ~l~g~l~-------------------~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 217 (475)
T TIGR00924 159 LLAGVIA-------------------ENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLL 217 (475)
T ss_pred HHHHHHH-------------------HhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHH
Confidence 9999984 445899999987765555444333332 22211 00000010 000000
Q ss_pred H-------------Hhcccccc--------------ccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 009362 250 K-------------VLDVSISQ--------------IAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFY 302 (536)
Q Consensus 250 ~-------------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (536)
. ....+... ..+... ++ .. ... .+++.+.+..+.+........+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~---~~~-~~~~~~~~l~l~~~~~~~~~~~~ 289 (475)
T TIGR00924 218 ALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAF---KP-RL---DAV-ARNKMYAYIVLFLEAVVFWVLYA 289 (475)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---hc-cC---CHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 000000 00 00 000 01111223333333334444444
Q ss_pred hhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch-----hHH--HHHhHHHHHH
Q 009362 303 SSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR-----VAI--QALGFFFMGV 375 (536)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----r~~--~~~~~~~~~~ 375 (536)
......+.+.++..+.+...... -......+..+..++..++..++..|++| +.. +.+|.++.++
T Consensus 290 Q~~s~l~l~~~~~~~~~~~~~~i--------p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~ 361 (475)
T TIGR00924 290 QMPTSLNFFADNNMHHEMLGMSV--------PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGA 361 (475)
T ss_pred HhhhHHHHHHHHhccccccceEE--------CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 44555565555533332211100 01123333333444433333333333333 233 3677777777
Q ss_pred HHHHhhccccccc-CCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhh
Q 009362 376 IYLAIGVPYSYKW-SKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS 454 (536)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~ 454 (536)
+++.+.+...... ....+.+++++..++.+.+.....|..+++..+..|++.||+.+|+......+|..+++.+.....
T Consensus 362 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 362 SFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766654211000 112345556666667777777788999999999999999999999999999999999998888763
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHhheeec
Q 009362 455 HDDNKVNATGVTIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 455 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
+ ..++...|...+.++++..++.++..|
T Consensus 442 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 442 V------PQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred c------ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335666777777777766666653443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=193.11 Aligned_cols=370 Identities=14% Similarity=0.111 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 98 (536)
|..+..+.+..+..--..+..+|+++.+.+|+ |+|.+..|+++++..+...+.+++..+++.|+|.++.+..
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~--------gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~ 82 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDL--------GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL 82 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHh--------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 44444444444444455677889999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178 (536)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~ 178 (536)
++++.+++.++-..... ..++.+-.+.|.|.+......+.++.+.+| |+-+..++++....++|..+++.+.
T Consensus 83 ~Llli~~G~~iR~~~~~-------~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~la 154 (395)
T COG2807 83 ALLLIAAGILIRSLGGL-------PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALA 154 (395)
T ss_pred HHHHHHHHHHHHhcccH-------HHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhh
Confidence 99999999999888743 889999999999999999999999999998 6789999999999999999999999
Q ss_pred HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccccc
Q 009362 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQ 258 (536)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (536)
..+.+. ..+||....+-+.++++.++.++ |...|. +......+
T Consensus 155 vpla~~------------------~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~~~~~~~------------ 197 (395)
T COG2807 155 VPLAQH------------------SGGWRGALGFWALLALLALLIWL--PQALRE-----QAASIATK------------ 197 (395)
T ss_pred hHHHHh------------------hccHHHHHHHHHHHHHHHHHHHh--hhcccc-----cccccccc------------
Confidence 998543 24799999998888888766643 332221 00000000
Q ss_pred ccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHH
Q 009362 259 IAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQ 338 (536)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 338 (536)
.++. ... .+.+..|.+.+.+...+..+|....|+|.++.| .|++..+ ++..
T Consensus 198 ---------~~~~-----~~v--w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~------------aG~l 248 (395)
T COG2807 198 ---------LVSV-----RKV--WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAE------------AGSL 248 (395)
T ss_pred ---------cccc-----ccc--ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHH------------hhhH
Confidence 0000 011 112456778888888899999999999999999 9999884 4477
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccc
Q 009362 339 AIFAICSTIPGYFVTVFFIDRI-GRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417 (536)
Q Consensus 339 ~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (536)
.....+..++.++....+.+|. ++|+.......++.++++.+.+.+. ..++.. .+..+++..+.++....
T Consensus 249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~------~~~~lw---~~llG~G~G~~F~laL~ 319 (395)
T COG2807 249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG------QLPILW---ALLLGLGQGGAFPLALT 319 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh------hHHHHH---HHHHhCccchHHHHHHH
Confidence 7788888999999999999975 5667777777777777777765544 112222 23344444444566666
Q ss_pred ccccccc-ccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 418 VPAELFP-ARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 418 ~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+....+ ++..+.-.|+.+.++++-..+||.++|++.|.+| +|+..+...+.+.++..+.-+
T Consensus 320 li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-----sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 320 LILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-----SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-----ChHHHHHHHHHHHHHHHHHHh
Confidence 6655554 4667888999999999999999999999998877 678888877777777666665
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=204.73 Aligned_cols=376 Identities=10% Similarity=0.014 Sum_probs=242.2
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHH--HHHHHHHHHHhhhhh-cccccccchhHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPM--LALALLGTVIGQLVF-GRLGDLIGRRRVYGL 98 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~-g~l~dr~Grr~~~~~ 98 (536)
+..++..++.++.......+.+|.+.++. |.|.+++|++ .++..+...+.++++ ++..||+||||..++
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~--------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED--------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 45556677889999899999999999999 9999999997 467788888888888 447999999998766
Q ss_pred HHHHH-HHHHHHhh-h--hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHH
Q 009362 99 ALMLM-VLSSLACG-F--SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 99 ~~~~~-~~~~~~~~-~--~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~ 174 (536)
.+.+. +++....+ + ..+. ..+++..-++.++..+...+....+..|..++++++...+....+..+|.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g 149 (390)
T TIGR02718 75 PMQCLVSACLASLALVGPDVAG-----AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGG 149 (390)
T ss_pred HHHHHHHHHHHHHHcCCcchhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHH
Confidence 55332 21222222 1 2121 13445555666677777778888888999988888888888888889999999
Q ss_pred HHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcc
Q 009362 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDV 254 (536)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~ 254 (536)
+...+++. +..|||..|++.++..++..+..++++|+++. . ++++++..+.
T Consensus 150 ~~~~~~l~-------------------~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~------- 200 (390)
T TIGR02718 150 GAGTLVLF-------------------GKFGQRPAFLLVACVPLASLVCVLWLKDRAVA--S-PEAPLARRAS------- 200 (390)
T ss_pred HHHHHHHH-------------------HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC--c-cccchhhHHH-------
Confidence 98888774 44579999999887776655544455443221 0 1100000000
Q ss_pred ccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHH
Q 009362 255 SISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKV 334 (536)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 334 (536)
+.+. .++ +.++......++..........+.+.++.+ .|+++.+
T Consensus 201 --------------------~~~~-l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~------------ 244 (390)
T TIGR02718 201 --------------------LFRF-FRR--PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEW------------ 244 (390)
T ss_pred --------------------HHHH-HcC--cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHH------------
Confidence 0111 111 223333334444445555566677888888 7888763
Q ss_pred HHHHHHHH-HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 335 ARHQAIFA-ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 335 ~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+...... ....+++.+++|++.||+|+|+.+..+..+.++..+....... .+..... .......+...+......+
T Consensus 245 ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~~~~ 322 (390)
T TIGR02718 245 IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAA-FWLAPGI-AVAWSCSAFGSLITGITSV 322 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-cccCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 23333333 3466777889999999999999888777665333222221111 0101111 1112222222222222224
Q ss_pred cccccccccccc-cccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHh
Q 009362 414 TTFIVPAELFPA-RFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 414 ~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 483 (536)
...+...+..++ +.+++.+++.+...++|..++|.+.|.+.| ..|++..|++.+++.+++.++.
T Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~------~~G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 323 AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD------RFGYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHccHHHHHHHHHHHHHHHHHh
Confidence 444555566665 889999999999999999999999999954 5577888888877777765544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-26 Score=204.28 Aligned_cols=384 Identities=16% Similarity=0.082 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhcc------------------------------------------CCCC
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYS------------------------------------------DGAD 56 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~ 56 (536)
..++...+.+.+.+......+.|.+|....+... ....
T Consensus 20 ~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 99 (464)
T KOG3764|consen 20 PLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAI 99 (464)
T ss_pred ceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhcc
Confidence 3445556677777777778888888876666541 0012
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhc
Q 009362 57 RFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGI 136 (536)
Q Consensus 57 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 136 (536)
+.+.+++++|++.+++.+.+.+..++.|.+.||+|+|..+++|+.++.++++++++..+| +.++++|.++|+|.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy------~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY------PMLFVARSLQGVGS 173 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh------HHHHHHHHHhhhhH
Confidence 345677899999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCcchhhhHhhhccCCcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhH
Q 009362 137 GGDYPLSATIMSEFANKM-TRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI 215 (536)
Q Consensus 137 g~~~~~~~~~i~e~~~~~-~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 215 (536)
+...++..++++|.+|.+ +|++++|+.-.+.++|.++||++|+.+. +..|.+.+|++.++
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-------------------e~~Gk~aPFlVL~~ 234 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-------------------EFAGKSAPFLVLAI 234 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-------------------hhcCCcCcHHHHHH
Confidence 999999999999999976 5799999999999999999999999994 55679999999998
Q ss_pred HHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHH
Q 009362 216 PAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWL 295 (536)
Q Consensus 216 ~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (536)
++++-..+.+++-|..+. +++.. ++.+..|+++..++ ++.......
T Consensus 235 v~Lld~~L~l~vi~p~~~----~~~~~-----------------------~~~~~~~~Ll~dP~-------I~~~agai~ 280 (464)
T KOG3764|consen 235 VLLLDGALQLLVIEPTEM----DPDST-----------------------EQGTPMWSLLMDPY-------ILLIAGAIT 280 (464)
T ss_pred HHHHHHHHHHheeCcccc----Ccccc-----------------------ccCccHHHHHhCch-------Hhhhhcchh
Confidence 888865555544332210 11000 00111222222221 222222222
Q ss_pred HHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc--hhHHHHHhHHHH
Q 009362 296 LVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIG--RVAIQALGFFFM 373 (536)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~ 373 (536)
..+...-...--++.+..+.+.-+.-+.| ..+....+...++..+.|.+.||++ |-.....+.+..
T Consensus 281 ~~n~~lafLePtlslwm~e~m~~p~w~~G------------~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~ 348 (464)
T KOG3764|consen 281 FSNSSLAFLEPTLSLWMLETMFTPGWEVG------------LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATV 348 (464)
T ss_pred hccchHHHhCcccHHHHHHhccCCCccee------------eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHH
Confidence 22223333333344444454553332333 4566667788889999999999999 533334444444
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc---ccchhhhHhHHHHHHHHHHHHHHH
Q 009362 374 GVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR---FRSTCHGISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~ 450 (536)
+.+...+.+... + ..-+......++..........|.. .+..|.-..+ ..|.+.++......+|.++||.+.
T Consensus 349 G~~~~~iP~~~~--~--~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~g 423 (464)
T KOG3764|consen 349 GVSSGPIPFATS--I--AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFG 423 (464)
T ss_pred HHHhchhHhhhh--H--HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhcccccc
Confidence 444444433333 0 0111112222233333333333443 3333333334 678999999999999999999999
Q ss_pred HhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 451 LWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 451 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
|.+ .+.+|+.+...+.++..++..-++.
T Consensus 424 g~i------v~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 424 GSL------VEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred chh------eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 999 4567888888888888887766655
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=195.84 Aligned_cols=422 Identities=11% Similarity=0.025 Sum_probs=278.5
Q ss_pred hhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccc----ccchhHHHHHH-HHHHHHHH
Q 009362 33 AYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGD----LIGRRRVYGLA-LMLMVLSS 107 (536)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~ 107 (536)
.+......+.++.+.+++ |.+..+.+++..+..+..++.+++.|+++| |+||||.++++ .....++.
T Consensus 17 q~~~~l~~~~l~~yl~~l--------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l 88 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAV 88 (477)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHH
Confidence 334444556666677888 999999999999999999999999999999 59999988775 66666666
Q ss_pred HHhhhhhcccc-----------cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccc--hhHHHHHHHHHHHHHHHH
Q 009362 108 LACGFSICTTK-----------QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTR--GAFIAAVFSMQGFGILAS 174 (536)
Q Consensus 108 ~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--g~~~~~~~~~~~~G~~i~ 174 (536)
++.+++++... ...+..++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++|
T Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg 168 (477)
T TIGR01301 89 ILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLG 168 (477)
T ss_pred HHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777665300 00002233333445557777788889999999998865 689999999999999999
Q ss_pred HHHHHHH--HHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHH
Q 009362 175 STVTMAV--CKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKV 251 (536)
Q Consensus 175 ~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~ 251 (536)
+.+++.. .+.++..++. .+..-..+.|..|++.++..++. ++..+.++|.|.. . +++.++. +.
T Consensus 169 ~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~-~~~~~~~--~~--- 234 (477)
T TIGR01301 169 YAAGAYSGLYKIFPFTKTE------ACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--G-SDDFINS--EA--- 234 (477)
T ss_pred HHHHHHHhHHHhccccccc------ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--c-cccchhh--hc---
Confidence 9999875 2221110000 00011236899999988777775 4455678887642 1 1110000 00
Q ss_pred hccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhh-hcCCCCCCccchhhHH
Q 009362 252 LDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQ-YIDGNGHDQTRSAFEE 330 (536)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 330 (536)
++. ++.+.+.....+. ...+...+.++.++...++..++++.+..|.+.+..+ .++-++.+. ..+.+
T Consensus 235 --------~~~-~~~~~~~~~~~i~-~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~ 302 (477)
T TIGR01301 235 --------APP-SKHGEEAFFGELF-GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG--AKYDD 302 (477)
T ss_pred --------ccc-cccchhhhHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch--hHHHH
Confidence 000 0000011111111 1223445677788888888888888888888888764 444433321 24555
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch-hHHHHHhHHHHHHHHHHhhccccccc------------C-CCchHHH
Q 009362 331 AFKVARHQAIFAICSTIPGYFVTVFFIDRIGR-VAIQALGFFFMGVIYLAIGVPYSYKW------------S-KHTNFGF 396 (536)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~ 396 (536)
+...+........+...+.+++-.++.+|+|+ |+...++.++.++++....+...... . +......
T Consensus 303 gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (477)
T TIGR01301 303 GVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKAS 382 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHH
Confidence 55556666666667767778888999999984 67778888888888777765432000 0 0010233
Q ss_pred HHHHHHHHHHHhcCccccccccccccccc--cccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHH
Q 009362 397 MFLYALTFFFANFGPNTTTFIVPAELFPA--RFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGG 474 (536)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 474 (536)
..+.....++.......++++++++..++ +..|..+|+.|.+-.+..++.....|.+.+..+. +...++.+.++
T Consensus 383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~----~~~~~~~~~gv 458 (477)
T TIGR01301 383 ALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG----GNLPAFVVGAV 458 (477)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC----CCeeHHHHHHH
Confidence 34444444555555668999999999995 4569999999999999999999888886555442 34667888888
Q ss_pred HHHHHHHHhheeeccccc
Q 009362 475 VCFMGFAITYFFTRETMG 492 (536)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (536)
.++++.++.++.+|+++.
T Consensus 459 ~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 459 AAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 888999988888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=203.39 Aligned_cols=422 Identities=11% Similarity=0.017 Sum_probs=240.8
Q ss_pred HHHHHHHhhhhhhcchhhh-HhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHHHHHHH
Q 009362 24 IAGMGLFTDAYDLFCIPPI-MKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVYGLALM 101 (536)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~ 101 (536)
.+++..+...+....+... ...+.+++ |++..+.+++.+.+........+++|+++|| +|||+++.++.+
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~l--------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQL--------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3344444444444444444 44456778 9999999999888877766777899999999 599999999999
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCccc--chhHHHHHHHHHHHHHHHHHHHHH
Q 009362 102 LMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMT--RGAFIAAVFSMQGFGILASSTVTM 179 (536)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~~G~~i~~~~~~ 179 (536)
+.+++.++++++++. .+.++++|++.|++.|...+...+++.|++|+++ |+.++++++.+.++|..++|.+++
T Consensus 97 ~~~ig~~l~~~~~~~-----~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g 171 (500)
T PRK09584 97 VLAIGYALVAWSGHD-----AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP 171 (500)
T ss_pred HHHHHHHHHHHhccc-----HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999998887542 2667788999999999999999999999998653 456788899999999999999999
Q ss_pred HHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH----HcCCCCcchhhhhhhcHHHHHHhHH------
Q 009362 180 AVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR----MTMPESARYTALVEQNVMQAAKDME------ 249 (536)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~----~~~~esp~~l~~~~~~~~~~~~~~~------ 249 (536)
++. +..|||+.|.+.++..++.++.+ ..++|.++. .++++.+. .+...
T Consensus 172 ~l~-------------------~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 229 (500)
T PRK09584 172 WLA-------------------AKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK--PDFEPINY-RKLLLTIVGVV 229 (500)
T ss_pred HHH-------------------HhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC--CCccccch-hhHHHHHHHHH
Confidence 994 44589999998775544433222 233443110 00000000 00000
Q ss_pred ------HHhccccccccccCCCCCCCCChhhh-hH--HHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh--cCC
Q 009362 250 ------KVLDVSISQIAEEYPLPPSPPQYPLI-SK--RFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY--IDG 318 (536)
Q Consensus 250 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~ 318 (536)
.....+.+......... .......+ .. ...+..+++.+.. +..+.....++......+..+... ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~ 307 (500)
T PRK09584 230 ALIAIATWLLHNQEIARMALGVV-ALGIVVIFGKEAFAMKGAARRKMIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNV 307 (500)
T ss_pred HHHHHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 00000000000000000 00000000 00 0000011112222 112233344444544455554331 111
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccC-CCch
Q 009362 319 NGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFV----TVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWS-KHTN 393 (536)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 393 (536)
+....|... .......+..+..++..++ .+++.+|.+..+.+.++.++.+++++.+......... ...+
T Consensus 308 ~~~~~g~~i------~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs 381 (500)
T PRK09584 308 EHSILGIAV------EPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVS 381 (500)
T ss_pred cccccceEE------CHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccC
Confidence 111111000 0111222333333333333 3555555555677888889988888877654431110 1122
Q ss_pred HHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccc----cccccchhh
Q 009362 394 FGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV----NATGVTIAL 469 (536)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~----~~~g~~~~~ 469 (536)
.+..+...++.+.+.....|...+++.+..|++.||+++|+......+|..++..+.+......... ...++...|
T Consensus 382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f 461 (500)
T PRK09584 382 VNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVF 461 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHH
Confidence 3355666666677777778999999999999999999999887777777777666664321111000 012366788
Q ss_pred HHHHHHHHHHHHHhheeec
Q 009362 470 LILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (536)
...++.+++..++.+...|
T Consensus 462 ~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 462 LQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888777666555553333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=200.92 Aligned_cols=423 Identities=13% Similarity=0.085 Sum_probs=263.2
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRV 95 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 95 (536)
.++|..+....+.....+. ...++...+.+.+++ |++..+++++.++. ....+++++.|++.||+|||++
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~l--------gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~v 93 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARY--------NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPI 93 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh--------CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHH
Confidence 4567766666555554443 345567788899999 99999999998874 4455678889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 96 YGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
+.++.++++++.++++++.+-.-..+++.+++.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.++.+
T Consensus 94 llig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~ 172 (591)
T PTZ00207 94 FVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILG 172 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987210001124999999999999999999999999999997 7899999999999999998644
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcC--CCCcchhhhhh-hcHHHHH-HhH--
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTM--PESARYTALVE-QNVMQAA-KDM-- 248 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~--~esp~~l~~~~-~~~~~~~-~~~-- 248 (536)
.+...+.. .+|+..|++.++..++. ++...++ |++|++...++ .++++.. +..
T Consensus 173 ~l~~~l~~--------------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~ 232 (591)
T PTZ00207 173 SIQLAFFS--------------------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK 232 (591)
T ss_pred HHHHHHHH--------------------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence 44443321 24888777766655554 4444444 44444321110 0111111 000
Q ss_pred ---------------------------------HHHhcc-------------------------------cc-c-ccc--
Q 009362 249 ---------------------------------EKVLDV-------------------------------SI-S-QIA-- 260 (536)
Q Consensus 249 ---------------------------------~~~~~~-------------------------------~~-~-~~~-- 260 (536)
....+. .. + +.+
T Consensus 233 ~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~ 312 (591)
T PTZ00207 233 GVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGK 312 (591)
T ss_pred hhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccc
Confidence 000000 00 0 000
Q ss_pred ccCC--------CCC--------C-C-CCh-hhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhc-CCCC
Q 009362 261 EEYP--------LPP--------S-P-PQY-PLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYI-DGNG 320 (536)
Q Consensus 261 ~~~~--------~~~--------~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 320 (536)
+.+. .++ + . ... +.+.+. .....+|++....++.......+...+..+.+. + |.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~---l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s-l~g~~~ 388 (591)
T PTZ00207 313 AKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEG---LKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA-LAGEAP 388 (591)
T ss_pred ccccccccccccccccccccccccCCCCCCcchHHHH---HhchhHHHHHHHHHHhhCchheeeecHHHHHHH-hcCCCC
Confidence 0000 000 0 0 000 011111 123568888888888777777777777778777 5 6633
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh--------HHHHHhHHHHHHHHHHhhcccccccCCCc
Q 009362 321 HDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV--------AIQALGFFFMGVIYLAIGVPYSYKWSKHT 392 (536)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (536)
... ..........+++.+|++..|.+.....+| ...+....++.++.+++.....
T Consensus 389 ~~~----------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p------- 451 (591)
T PTZ00207 389 DDA----------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLP------- 451 (591)
T ss_pred Ccc----------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCC-------
Confidence 210 011245667778888888888877332222 2222222224444444443322
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH-HHHHHhhhccccccc-------ccc
Q 009362 393 NFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG-TVAFLWASHDDNKVN-------ATG 464 (536)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~~~l~~~~~~~~-------~~g 464 (536)
...+.+..++.+++.....++....++|+|. ++-|+-.-+.....-+|+.+- -.++|.++|.....+ ..=
T Consensus 452 -~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C 529 (591)
T PTZ00207 452 -KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVC 529 (591)
T ss_pred -ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCcee
Confidence 1234444444445555556788888999999 888888888887777777765 578888876543111 112
Q ss_pred cchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 465 VTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
++.+|++.+++++++++....+.-++|+
T Consensus 530 ~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 530 VVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred eHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 5678999999999998887755555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=186.88 Aligned_cols=382 Identities=15% Similarity=0.152 Sum_probs=257.9
Q ss_pred HHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccc-hhHHHHHHHHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG-RRRVYGLALMLMVLS 106 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~ 106 (536)
.+++..+..+...|..+...++. |.|..|+|.+.++..+...++++++|.++||++ +||++.+..++.++.
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~--------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESR--------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 34455555566677788888888 999999999999999999999999999999986 577887877777777
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 009362 107 SLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT-MAVCKIF 185 (536)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~-~~l~~~~ 185 (536)
.......+++ +.+++.-++..+......|...++..+... +++.-.|-.-...++|.+++.... ..+....
T Consensus 82 ~~~~~~~~~f------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~ 153 (400)
T PF03825_consen 82 LLLLAFSSSF------WWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL 153 (400)
T ss_pred HHHHHHhccH------HHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh
Confidence 7777777776 777788888888888888888888888875 344555666667778887775542 2232111
Q ss_pred hcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCC
Q 009362 186 EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPL 265 (536)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (536)
+..+....+++.+...++.....+.+|+.|+. ++.+++ .++
T Consensus 154 ----------------~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~~~~~-~~~------------------- 194 (400)
T PF03825_consen 154 ----------------GISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RSAKES-VKK------------------- 194 (400)
T ss_pred ----------------ccccccHHHHHHHHHHHHHHHHHHhCCCCccc---cccCCC-ccc-------------------
Confidence 11223345566665555555555667887631 111100 000
Q ss_pred CCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcC-CCCCCccchhhHHHHHHHHHHHHHHHH
Q 009362 266 PPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYID-GNGHDQTRSAFEEAFKVARHQAIFAIC 344 (536)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (536)
....... ...++ +.+....+..+...........|.+.|+++ .| .+.. ..+....+..+
T Consensus 195 ----~~~~~~~-~llk~--~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~gg~~~~------------~~g~~~~l~~~ 254 (400)
T PF03825_consen 195 ----LLGLDAL-KLLKN--PRFLVFLLAAFLIGISHAAYYTFFSIYLQE-LGGYSGS------------TIGILWALGVV 254 (400)
T ss_pred ----ccchHHH-HHhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccchhh------------HHHHHHHHHHH
Confidence 0000001 11111 234444444555555666677888889988 55 4444 44456677888
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHH---HHHHHHHhcCccccccccccc
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLY---ALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 421 (536)
++++..+..+++.+|+|.|+++.++.+..++=..++..... +.+....+. .+.-+............++.+
T Consensus 255 aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~ 328 (400)
T PF03825_consen 255 AEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDR 328 (400)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888877633 111111111 122333333334566788899
Q ss_pred cccccccchhhhHhHHH-HHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 422 LFPARFRSTCHGISGAF-GKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 422 ~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
..|++.|+++.++++.. ..+|..+|..+.|++.|..+....+.|...+.+.+++.++..++.+++.||+
T Consensus 329 ~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 329 IAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999998875 5789999999999998876543344555667777777777766666555543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=190.65 Aligned_cols=347 Identities=10% Similarity=0.042 Sum_probs=219.8
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc----cchh-HHHHHHHHHHHHHHHHhhhhhc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL----IGRR-RVYGLALMLMVLSSLACGFSIC 115 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~ 115 (536)
.+...+.+++ |++..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..+++.++....++
T Consensus 31 ~l~~~~t~~~--------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~ 102 (444)
T PRK09669 31 FLAYFYTDVF--------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPD 102 (444)
T ss_pred HHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCC
Confidence 3455566777 9999999999999999999999999999998 7885 4566777777777766666655
Q ss_pred ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFA-NKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 116 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
......+..+++..++.+.+.......-.++.+|+. ++++|++..+....+..+|..+++.+...+...++.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~------- 175 (444)
T PRK09669 103 FGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK------- 175 (444)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 432333466677777777776677777789999988 568899999999999999998888877776655432
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChh
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYP 273 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (536)
.....+|+..+.+.+++.++..+.. +..+|.++. ++++ +.+..+
T Consensus 176 -----~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~---~~~~---------------------------~~~~~~ 220 (444)
T PRK09669 176 -----GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP---EVDN---------------------------SSSVWK 220 (444)
T ss_pred -----CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC---CCcC---------------------------CCCHHH
Confidence 0234589998888777666654433 334443211 0000 000011
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 009362 274 LISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVT 353 (536)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (536)
.++....+ +.++.++...++..............+.+...+. +. ..........+..+++.++.
T Consensus 221 ~~~~~~~n---~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~------------~~~~~~~~~~i~~ii~~~~~ 284 (444)
T PRK09669 221 DLKLLLGN---SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PD------------LATLFLVTGMIAGLFGALLS 284 (444)
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HH------------HHHHHHHHHHHHHHHHHHHH
Confidence 11111111 2233333333332222222222223333322221 11 22233445556777888899
Q ss_pred HHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc-------cc
Q 009362 354 VFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP-------AR 426 (536)
Q Consensus 354 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~ 426 (536)
+++.||+|+|+.+..+..+..++...+..... ...+...+..++.+++.....+..+++.+|..+ .+
T Consensus 285 ~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r 358 (444)
T PRK09669 285 ERLLGKFDRVRAFKWTIVAFVILSALIFFIPP------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR 358 (444)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC
Confidence 99999999999988877665544333322211 123333333444455555556788888888875 33
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 427 FRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 427 ~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
..|...|..+....+|..+++.+.|.+.+..|+
T Consensus 359 ~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 359 LDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456778899999999999999999999887764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=172.80 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=263.8
Q ss_pred ehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHH
Q 009362 17 YHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRV 95 (536)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~ 95 (536)
.|...+...|+..|-.++.....+....+...+. +++.++..++.++++....+.+++.|++.|| +|-|..
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~--------ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~g 112 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDS--------NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLG 112 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhccc--------ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHH
Confidence 4566677777777777777777777777777777 8999999999999999999999999999996 688877
Q ss_pred HHHHHHHHHHHHHHhhh---hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHH
Q 009362 96 YGLALMLMVLSSLACGF---SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGIL 172 (536)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 172 (536)
-++-+....++.++++. ...+ |.+.++|++.|+|.-....+-++|..-|+..|+.+.++|+......+|..
T Consensus 113 tii~~~fv~~GqliFa~Ggi~~aF------w~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst 186 (459)
T KOG4686|consen 113 TIILCIFVFLGQLIFAAGGISHAF------WTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST 186 (459)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHH------HHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence 66666666777776653 4554 99999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCcccccccCCCCchhHH---HHHhh---HHHHHHHHHHHcCCCCcchhhhhhhcHHHHHH
Q 009362 173 ASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLI---LMLGS---IPAAFTYYWRMTMPESARYTALVEQNVMQAAK 246 (536)
Q Consensus 173 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~---f~~~~---~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~ 246 (536)
+-..+.+++.+..+... ...|-... ..+.. ...+++.... -+ .++.+++
T Consensus 187 vNf~lm~~ly~~~~~~~------------~~~ghT~LG~~l~~~~~tc~~slical~l-------g~------~D~rAer 241 (459)
T KOG4686|consen 187 VNFLLMPFLYDTMGRMF------------PGVGHTLLGLWLCFEVKTCKQSLICALSL-------GL------SDDRAER 241 (459)
T ss_pred eeeeecHHHHHHHHHhc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHh-------hh------hhhHHHH
Confidence 88888888876665421 11111111 01111 1111111110 00 0111111
Q ss_pred hHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccch
Q 009362 247 DMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRS 326 (536)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (536)
.+.+..+...++. + ..-.+...+.+|.+.+..++.....+.+....|.++++.+|+++...+
T Consensus 242 ilh~e~g~~Ge~p--------k--------Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~-- 303 (459)
T KOG4686|consen 242 ILHLEEGFLGEEP--------K--------LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAG-- 303 (459)
T ss_pred HHhhhcCcccCCc--------c--------cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhcc--
Confidence 1111111100100 0 001112335578888888888888888999999999999999998644
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHH
Q 009362 327 AFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFF 406 (536)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (536)
.+...+ ...+.+.+.+.|.++||+|++...+.+.++..+..-....... .+++..+.+..+....
T Consensus 304 ---------~i~s~v-y~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 304 ---------NILSTV-YGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF-----LSPYTSMTFLGLSYSL 368 (459)
T ss_pred ---------chhhhh-hhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-----ccHHHHHHHHhhhHHH
Confidence 133333 3445566778999999999998777766655544322222222 1345555555555444
Q ss_pred HhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 407 ANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 407 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.... .|..++.+.|.++.|++.|+++.+.++|-.+.|++.|.+.|..+. .......|++.+.+++....+.+
T Consensus 369 lAcs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~--y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 369 LACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS--YDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc--hhhHHHHHHHHHHHHHHHHHHHh
Confidence 4443 344556778889999999999999999999999999999886652 22334455666666666666666
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=190.46 Aligned_cols=360 Identities=8% Similarity=-0.026 Sum_probs=221.5
Q ss_pred hcchhh-hHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccc----ccch-hHHHHHHHHHHHHHHHH
Q 009362 36 LFCIPP-IMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGD----LIGR-RRVYGLALMLMVLSSLA 109 (536)
Q Consensus 36 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~ 109 (536)
.....+ ....+.+.+ |++...+|.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++.++
T Consensus 22 ~~~~~~~l~~yyt~v~--------Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~l 93 (473)
T PRK10429 22 IGIVYMYLMYYYTDVV--------GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFL 93 (473)
T ss_pred HHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHH
Confidence 333334 344455666 999999999999999999999999999999 6699 55667788887777666
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFA-NKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEAT 188 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~ 188 (536)
+...++......+..+++.-++.+++.....+.-.+++.|+. ++++|.+..++...+.++|..+.+.+...+...++.
T Consensus 94 lf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~- 172 (473)
T PRK10429 94 LFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG- 172 (473)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 654443211112345666777778888888888889999998 589999999987777788877776666555443332
Q ss_pred cccCCcccccccCCCCchhHHHHHhhHHHHHHH-HHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCC
Q 009362 189 TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTY-YWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPP 267 (536)
Q Consensus 189 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (536)
..+..+|+....+.++..++.. +..+..+|.+.. ++.+.++ ++
T Consensus 173 -----------~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~----------------------~~ 216 (473)
T PRK10429 173 -----------GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS---DNQVSAE----------------------GS 216 (473)
T ss_pred -----------CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc---ccccccc----------------------cc
Confidence 0123478888777666655543 333446664321 0000000 00
Q ss_pred CCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhh
Q 009362 268 SPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTI 347 (536)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (536)
+.+..+.+ +...+. +.++.++...+......+....+.+.+.+...+ +.. ..........++.+
T Consensus 217 ~~~~~~~~-~~~~~n--~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~------------~~~~~~~~~~i~~i 280 (473)
T PRK10429 217 HLTLKDIV-ALIYKN--DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DAD------------LFPYYLSYAGAANL 280 (473)
T ss_pred CCCHHHHH-HHHhcC--HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHH------------HHHHHHHHHHHHHH
Confidence 00111111 111111 334444444444445555555555545444222 211 22234445556778
Q ss_pred hhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc---
Q 009362 348 PGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP--- 424 (536)
Q Consensus 348 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 424 (536)
++.++.+++.||+|+|+.+..+..+..++.+.+..... .. ....+..++..++.++......+..+++.+|..+
T Consensus 281 i~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 281 VTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL--AA-PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc--cC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 88889999999999999988777765555444332110 00 1122333333333334444445666777888855
Q ss_pred ----ccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 425 ----ARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 425 ----~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
.+..|...|.......++..+++.+.|++.+..|+
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34456688999999999999999999999876654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=190.21 Aligned_cols=370 Identities=12% Similarity=0.037 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccc-----hhH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG-----RRR 94 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~ 94 (536)
..+.++...++..|+.......+.+.+.+++ |++.++++...++..+...+-.+ +|+++||++ ||+
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~l--------g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~ 96 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDL--------GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRW 96 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchH
Confidence 3444555567888887444455566677788 99999999999999999999766 999999998 777
Q ss_pred HHHHHHHHHH-HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhH---HHHHHHHHHHH
Q 009362 95 VYGLALMLMV-LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAF---IAAVFSMQGFG 170 (536)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~---~~~~~~~~~~G 170 (536)
.++++.++.+ ++....+..++. .....+..++.+++.+...++.-+++.|..+ +++... .+.......+|
T Consensus 97 ~l~~~~~l~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G 170 (468)
T TIGR00788 97 YLVLSGLLGSAILYGLLPGKVSS-----AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATG 170 (468)
T ss_pred HHHHHHHHHHHHHHHhcccccch-----HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHH
Confidence 8888877763 443333333442 2344458999999999999999999999998 555443 33444445689
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHH------H
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQ------A 244 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~------~ 244 (536)
.++++.+++.+. +..+||..|++.++..++..+...+++|++.....+.++++. .
T Consensus 171 ~~vg~~l~G~l~-------------------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~ 231 (468)
T TIGR00788 171 GLISSLLGGPLL-------------------DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLT 231 (468)
T ss_pred HHHHHHHHHHHH-------------------HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhh
Confidence 999999999884 445799999998777776666667788864210000000000 0
Q ss_pred HHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHH-HHHHHHhhhhhhhHHhhhhcCCCCCCc
Q 009362 245 AKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLL-VDIVFYSSNLFQSKIYHQYIDGNGHDQ 323 (536)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~ 323 (536)
....+.. +.....+.+...+ +.++......++ ..........+ -.+..+.+|+++...
T Consensus 232 ~~~~~~~-----------------~~~~~~l~~~l~~---~~i~~~l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~ 290 (468)
T TIGR00788 232 LGVLANV-----------------KVQILGLRGAIQL---LEIAKPLIFIFLSYANLPGASGSV-FCATTQCLPGGPSFS 290 (468)
T ss_pred hhHHHHH-----------------HHHHHHHHHHHhc---HHHHHHHHHHHHHHhhcCCCCcee-EEEEcccCCCCcchh
Confidence 0000000 0000001111111 222222222221 11111111110 012223478888854
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC----CchHHHHHH
Q 009362 324 TRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK----HTNFGFMFL 399 (536)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 399 (536)
| .......++.+++..+.+++.+|++.|+.+.++.++.+++.+....... .|.. ...+.....
T Consensus 291 G------------~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~~~~gi~~~~~~~~~ 357 (468)
T TIGR00788 291 G------------MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK-RWNLAFGISDEVFVLGD 357 (468)
T ss_pred h------------hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee-ccccccCCCCeeeeeeh
Confidence 4 5666677889999999999999999999999998888887655432221 1110 111122222
Q ss_pred HHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 400 YALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
..+.....+... .....++.+..|++.+|+..++.+++.++|..+++.+.+.+.+..|
T Consensus 358 ~~l~~~~~g~~~-~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 358 SIIAEVLAQLKF-MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred hHHHHHHHHHHH-ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 222222333333 3446788999999999999999999999999999999999977655
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-19 Score=177.01 Aligned_cols=372 Identities=13% Similarity=0.095 Sum_probs=261.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcccccccchhHHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcch
Q 009362 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVY-GLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYP 141 (536)
Q Consensus 63 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 141 (536)
+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++.+..+.+.- .++...+.-++.-++.+....
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~----~~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPG----QWWLALVLFIIANVGYEASNV 145 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999887754 55555555666666664221 235555666666677777888
Q ss_pred hhhHhhhccCCcccc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Q 009362 142 LSATIMSEFANKMTR--------------------------GAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDV 195 (536)
Q Consensus 142 ~~~~~i~e~~~~~~r--------------------------g~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~ 195 (536)
.-.+++.|..+++++ ++..+.-.....+|.++.-.+...+....+..
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~------- 218 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST------- 218 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------
Confidence 889999999999888 89999888888888888887777665433320
Q ss_pred cccccCCCCchhHHHHHhhHHHHH-HHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhh
Q 009362 196 NKRQHQADIAWRLILMLGSIPAAF-TYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPL 274 (536)
Q Consensus 196 ~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (536)
..+..+-|..+.+.++.-++ .+..++++||.|+.. ..++.........++.. +
T Consensus 219 ----~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~--------------------~- 272 (477)
T PF11700_consen 219 ----ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFKRLW--------------------R- 272 (477)
T ss_pred ----cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHHHHH--------------------H-
Confidence 12344568888887776555 466677888887521 11111111111111110 0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009362 275 ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354 (536)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (536)
.....++.+.+...++.+++..-+..++......|..+.+|++.. ......+...+..++|+++.+
T Consensus 273 --t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~------------~l~~~~l~~~i~a~~Ga~~~g 338 (477)
T PF11700_consen 273 --TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTT------------QLIVFGLVVQIVAIIGALLFG 338 (477)
T ss_pred --HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 111112346677788888888889999999999999988999988 344677778888999999999
Q ss_pred HHHHhhchh--HHHHHhHHHHHHHHHHhhc--ccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccch
Q 009362 355 FFIDRIGRV--AIQALGFFFMGVIYLAIGV--PYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRST 430 (536)
Q Consensus 355 ~l~d~~grr--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 430 (536)
++.||+|.| +++..+.++..+..+.-.+ ... .......+...++.+..+....+.++..-++.+|+.|+++.+.
T Consensus 339 ~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~--~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~e 416 (477)
T PF11700_consen 339 WLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS--FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAE 416 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc--ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhH
Confidence 999999988 7766666555332222111 111 0001123344555556666667777888999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccccc
Q 009362 431 CHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGR 493 (536)
Q Consensus 431 ~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (536)
.+|++...+...+++||.++|.+.+.++ +.+..+....++.+++.++.+ .++..|++
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg-----~~r~g~~~l~~lf~~gl~ll~-~v~~~~g~ 473 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATG-----SQRYGFLFLLVLFLIGLILLF-FVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchhHHHHHHHHHHHHHHHHh-hccchhhh
Confidence 9999999999999999999999987665 357788888888888888876 66655554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=179.77 Aligned_cols=411 Identities=10% Similarity=0.029 Sum_probs=228.8
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLA 99 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~ 99 (536)
+..++...+...+....+...+|. +.+++ |+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l--------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQL--------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 333444444444444444555555 45667 99999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcc--cchhHHHHHHHHHHHHHHHHHHH
Q 009362 100 LMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKM--TRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
.++.+++.++.+...+. ...+.++..+.++|.|...+...++++|.+|++ +|..++++.+.+.++|..++|.+
T Consensus 83 ~il~~lg~lll~~~~~~-----~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 83 ALLMAIGHVVLGASEIH-----PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 99999998777654321 123444445555677777788889999999875 79999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC----CCCcchhhhhhhcHHHHHHhH-----
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM----PESARYTALVEQNVMQAAKDM----- 248 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~----~esp~~l~~~~~~~~~~~~~~----- 248 (536)
.+++. +..||++.|.++++..++.++..++. ++..... .++.++++.....
T Consensus 158 ~g~L~-------------------~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 158 CGYAQ-------------------EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVN-KKVLRATNFLLPNWGWLL 217 (493)
T ss_pred HHHHH-------------------hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CCCchhhhHHHHHHHHHH
Confidence 99983 45689999998766544443333322 1110000 0000000000000
Q ss_pred -HH-----Hhccccc-cccc-c------------CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 009362 249 -EK-----VLDVSIS-QIAE-E------------YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQ 308 (536)
Q Consensus 249 -~~-----~~~~~~~-~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (536)
.- ....... +... . .....++. .+.- |++...++.+.+........+.-...-+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e-r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl 291 (493)
T PRK15462 218 VLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAE-----NQKQ-RKELGLIVTLTFFSMLFWAFAQQGGSSI 291 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHH-HhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 00 0000000 0000 0 00000000 0000 1111111112222122222222222222
Q ss_pred hHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch--h-----HHHHHhHHHHHHHHHHhh
Q 009362 309 SKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR--V-----AIQALGFFFMGVIYLAIG 381 (536)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r-----~~~~~~~~~~~~~~~~~~ 381 (536)
..+.++..+.+- .|. ....+... .+..+..++.+++..++-.|..| | .-+.++.++.+++++++.
T Consensus 292 ~lfa~~~vd~~~--~g~-----~ip~~~~q-slNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~ 363 (493)
T PRK15462 292 SLYIDRFVNRDM--FGY-----TVPTAMFQ-SINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILT 363 (493)
T ss_pred HHHHHHhccchh--cce-----eeCHHHHH-hHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333323111110 000 00122222 33333344444444555455422 1 126778888888877775
Q ss_pred cccccccC-CCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHH-HHHHHHHHHHHHhhhccccc
Q 009362 382 VPYSYKWS-KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFG-KVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 382 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~~~~~~~l~~~~~~ 459 (536)
+....... ...+.+++++..++...+.....|+..+.++++.|++.+|..+|+..... .+|..++..+.+...+....
T Consensus 364 ~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~ 443 (493)
T PRK15462 364 LSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD 443 (493)
T ss_pred HHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 43321111 11344556666677788888889999999999999999999999986643 56666666665554221100
Q ss_pred c------cccccchhhHHHHHHHHHH
Q 009362 460 V------NATGVTIALLILGGVCFMG 479 (536)
Q Consensus 460 ~------~~~g~~~~~~~~~~~~~~~ 479 (536)
. +...+...|...+...+++
T Consensus 444 ~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 444 ASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHH
Confidence 0 1124556777777766655
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=172.99 Aligned_cols=346 Identities=12% Similarity=0.074 Sum_probs=254.7
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccc----cchh-HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDL----IGRR-RVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLG 133 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 133 (536)
|+++..+|.+..+.-+--++.-|+.|.++|| +||+ +.++++.+..++...++..+++++..+.+...++.-.+.+
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999995 7875 4677888999999999999987655666778888899999
Q ss_pred hhccCcchhhhHhhhccCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHH
Q 009362 134 VGIGGDYPLSATIMSEFAN-KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILML 212 (536)
Q Consensus 134 ~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~ 212 (536)
++.......-.++..|+.+ ++||.+..+.-+.+.++|.++...+...+....+. .....||+..-.+
T Consensus 124 l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~------------~~~~~g~~~~~~~ 191 (467)
T COG2211 124 LGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG------------GDKALGYQGTALV 191 (467)
T ss_pred HHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CcchhhHHHHHHH
Confidence 9999999888999999886 68999999999999999999999998888887765 1236789998888
Q ss_pred hhHHHHHHHHHH-HcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHH
Q 009362 213 GSIPAAFTYYWR-MTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACA 291 (536)
Q Consensus 213 ~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (536)
.+++.++..+.. +..+|.+.. ....+++.++.. ...+...+ +.+.+...+
T Consensus 192 ~~vi~~i~~l~~~~~v~ER~~~---~~~~~~~~~~~~-----------------------~~~~~~~~---~Nrp~~~~l 242 (467)
T COG2211 192 LGVIGVILLLFCFFNVKERVVE---TQPTKTGVKLKL-----------------------KDSFLLIF---KNRPLLLLL 242 (467)
T ss_pred HHHHHHHHHHHHHHHhhcccCc---cccCcccccccH-----------------------HHHHHHHH---ccchHHHHH
Confidence 777777664444 445665431 010100000000 00111111 113344444
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHH
Q 009362 292 TSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFF 371 (536)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 371 (536)
...++......-.......|.+..+|.+.. ...........+.+++.++..++.+|+|+|+++.++.+
T Consensus 243 ~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l------------~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~ 310 (467)
T COG2211 243 LMNLLLFIAFNIRGSIMVYYVTYVLGDPEL------------FAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL 310 (467)
T ss_pred HHHHHHHHHHHHHhhhhheeEEEEcCChHH------------HHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence 455555555555555555666655565554 44455566666667778899999999999999999999
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc-------ccccchhhhHhHHHHHHHHH
Q 009362 372 FMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP-------ARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~ 444 (536)
+..++.+++.+... +....+++..+..+.+.....+..|++.+|... .+.-|...|...++..+|.+
T Consensus 311 ~~~i~~~~~~f~~~------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a 384 (467)
T COG2211 311 LLAVGYLLLYFTPA------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA 384 (467)
T ss_pred HHHHHHHHHHhhcC------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 99988888877664 335555666566666666777999999998864 45568889999999999999
Q ss_pred HHHHHHHhhhccccccccc
Q 009362 445 IGTVAFLWASHDDNKVNAT 463 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~ 463 (536)
++..+.|++.+..|+..+.
T Consensus 385 la~~~~g~~L~~~Gyv~~~ 403 (467)
T COG2211 385 LAGFIPGWILGAIGYVPNV 403 (467)
T ss_pred HHHHHHHHHHHHcCCCCCc
Confidence 9999999998887765444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=171.27 Aligned_cols=413 Identities=12% Similarity=0.049 Sum_probs=282.7
Q ss_pred CcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch
Q 009362 13 KTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR 92 (536)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 92 (536)
+..++||.+++++++..+.+++.+..++++.......| + +....-|+..+|.+.+....+++-|+.|++|-
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y--------g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL 108 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFY--------G-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL 108 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHh--------c-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch
Confidence 45567899999999999999999988888887777777 7 77778899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccccchhh--HHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHH
Q 009362 93 RRVYGLALMLMVLSSLACGFSICTTKQCVLG--SLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFG 170 (536)
Q Consensus 93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 170 (536)
|...+++..+.+++..+-..+....-+..++ ....+..+.+.+.-.....-..+..-|+++++|..+..+-.++..+|
T Consensus 109 R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 109 RTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence 9999999999999999877664321111124 78889999999988877777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhH--HHHHhhHHHHH-HHHHHHcCCCCcchhhhhhhcHHHHHHh
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRL--ILMLGSIPAAF-TYYWRMTMPESARYTALVEQNVMQAAKD 247 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~--~f~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~~~~~~ 247 (536)
.+++.++...+..... ..+...|.. .|+....++.+ .....+..++.|+..+......+. +
T Consensus 189 vavg~llppilV~~~~-------------~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---~ 252 (480)
T KOG2563|consen 189 VAVGFLLPPILVPSSK-------------DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---D 252 (480)
T ss_pred HHHHhhccceecCCCC-------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---c
Confidence 9999999888853321 134556765 34433333333 333334445544431111111111 0
Q ss_pred HHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchh
Q 009362 248 MEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSA 327 (536)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 327 (536)
....+.+++. -+.+.+..+.+++......+++..+.+...+.. .|+...
T Consensus 253 ---------------------~~f~~si~~~---~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~------ 301 (480)
T KOG2563|consen 253 ---------------------ASFPKSIKSC---FKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGV------ 301 (480)
T ss_pred ---------------------CcHHHHHHHH---HcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCcc------
Confidence 0001111111 122457777777777777778777776655544 566655
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch-hHHHHHhHHHHHHHH-HHhhcccccccCCCchHHHHHHHHHHHH
Q 009362 328 FEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR-VAIQALGFFFMGVIY-LAIGVPYSYKWSKHTNFGFMFLYALTFF 405 (536)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (536)
.++.......+++++++.++|.+.||.+. |...++......++. .+...... ....+.+...+...+
T Consensus 302 ------~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-----~~~~viv~~t~~~~g 370 (480)
T KOG2563|consen 302 ------FAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-----LGDSVIVFTTCGLLG 370 (480)
T ss_pred ------ccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----CCceEehhhhHHHHH
Confidence 34467777888899999999999999876 344444444444432 22211111 112334445555556
Q ss_pred HHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccch-hhHHHHHHHHHHHHHhh
Q 009362 406 FANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTI-ALLILGGVCFMGFAITY 484 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 484 (536)
++..+..|+..-+..|..-|..-++..|+.+..+++-+++-.++.+...+..+.. ++.. .-+.....++++.++..
T Consensus 371 ~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~l~~~lva 447 (480)
T KOG2563|consen 371 FFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPP---GNTFPANIFLTVSALLGAILVA 447 (480)
T ss_pred HhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCC---CCCccchhHhHHHHHHHHHHHh
Confidence 6667777999999999987788899999999999999999999999887655421 3333 33444555566666666
Q ss_pred eeeccccccch
Q 009362 485 FFTRETMGRSL 495 (536)
Q Consensus 485 ~~~~~~~~~~~ 495 (536)
++.|+.++.+.
T Consensus 448 ~~r~~y~R~~~ 458 (480)
T KOG2563|consen 448 FFRPDYRRLRA 458 (480)
T ss_pred hhhhhHHhHhh
Confidence 45555554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=170.54 Aligned_cols=384 Identities=13% Similarity=0.109 Sum_probs=236.4
Q ss_pred HHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHH--
Q 009362 29 LFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVL-- 105 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~-- 105 (536)
++...+..+..-+..+. +.++. |+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+..+
T Consensus 16 ~f~~Ff~~gi~~pF~~iWL~~~~--------GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~ 87 (412)
T PF01306_consen 16 YFFYFFIWGIFLPFFPIWLTQVA--------GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF 87 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcccc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 34444445555555555 44457 99999999999999999999999999999999987765544333221
Q ss_pred HHH-HhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009362 106 SSL-ACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 106 ~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~ 184 (536)
+.. ...+.+-.+ ...+...+++-+..|+......|+.-+++.++. ++.+.-.|-.-+..++|.+++..++|.+...
T Consensus 88 ~pff~~v~~pll~-~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i 164 (412)
T PF01306_consen 88 GPFFIYVFGPLLQ-SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI 164 (412)
T ss_dssp HHHHHHTHHHHHH-TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence 222 212222100 000122333334444444455566666665554 4456667777788999999999999998643
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC-CCCcchhhhhhhcHHHHHHhHHHHhccccccccccC
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM-PESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEY 263 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (536)
+-+..|+++...+++..++.++. |+.++.....+.+..+.
T Consensus 165 --------------------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~------------------- 205 (412)
T PF01306_consen 165 --------------------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK------------------- 205 (412)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------------------
T ss_pred --------------------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC-------------------
Confidence 23577777666655554444333 34333210111100000
Q ss_pred CCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHH
Q 009362 264 PLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAI 343 (536)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
++.+.+...+. .+.+.+|.+.+........++......+.|+..... ++ +.+...-+.......
T Consensus 206 ----~~~~~~~~~~l---~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~-~~--------~~g~~~~G~l~s~~v 269 (412)
T PF01306_consen 206 ----DKVSLKDVLSL---FKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ-SA--------GQGNQMYGYLWSVQV 269 (412)
T ss_dssp --------HHHHHHH---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SH--------HHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc--------ccChhHHhHHHHHHH
Confidence 00001111111 122456666666555556666666556666665221 11 122235556778888
Q ss_pred HhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc
Q 009362 344 CSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF 423 (536)
Q Consensus 344 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (536)
+.+++...+.+++.+|+|.|+.++++..++.+=..+.++... ++.+.+.-.+-+.-.........-++.+.+
T Consensus 270 ~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--------~~~i~~~klLH~~e~~l~lva~fkYI~~~f 341 (412)
T PF01306_consen 270 FLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--------PWVISLIKLLHALEFPLLLVAAFKYITAHF 341 (412)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999988888776 444555544444443333455567889999
Q ss_pred cccccchhhhHh-HHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 424 PARFRSTCHGIS-GAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 424 p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
|++..++...+. +...++|.++.+.+.|.+ +|+.|++.+|++.+.+.++..++..+.+++.++
T Consensus 342 d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l------yd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 342 DKRLSATLYLVGFQFAKQIGIIILSPLAGYL------YDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp -GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh------HhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 999988998885 677889999999999999 457788899999999988888888766665443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=176.83 Aligned_cols=348 Identities=13% Similarity=0.078 Sum_probs=247.2
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccc----ccchhHH-HHHHHHHHHHHHHHhhhh-h
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGD----LIGRRRV-YGLALMLMVLSSLACGFS-I 114 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~ 114 (536)
...+.+.+.. ++++...|.+..+..+-.++..|+.|.++| |+||||. ++++....+++.+++... +
T Consensus 23 ~~~~f~~~~~--------gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p 94 (428)
T PF13347_consen 23 YLLYFYTDVL--------GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPP 94 (428)
T ss_pred HHHHHHHHHc--------CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcccc
Confidence 4456666777 999999999999999999999999999999 8998764 557888888888877766 4
Q ss_pred -cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009362 115 -CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN-KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRD 192 (536)
Q Consensus 115 -~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~ 192 (536)
+.........+.+.-++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+.+.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~----- 169 (428)
T PF13347_consen 95 AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG----- 169 (428)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----
Confidence 22222223456777788899999999999999999998 57899999999999999998888888877766553
Q ss_pred CcccccccCCC-CchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCC
Q 009362 193 NDVNKRQHQAD-IAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP 270 (536)
Q Consensus 193 ~~~~~~~~~~~-~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (536)
.+. .+|++...+.+++.++. .+..+..+|.++. .++++. +.+
T Consensus 170 --------~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~-----~~~~~~-----------------------~~~ 213 (428)
T PF13347_consen 170 --------GDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE-----VTEQEK-----------------------KIS 213 (428)
T ss_pred --------CccchHHHHHHHHHHHHHHHHhhhhhheeeecccc-----cccccc-----------------------ccc
Confidence 222 38999999877777765 4444566772211 000000 001
Q ss_pred ChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 271 QYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
..+.++..... |.+..+....++............+.+.+..+|.+. ..........++.+++.
T Consensus 214 ~~~~~~~~~~n---r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-------------~~~~~~~~~~~~~~v~~ 277 (428)
T PF13347_consen 214 LRDSLRSLFRN---RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-------------LISIFMLIFFVASIVGS 277 (428)
T ss_pred cccchhhhccc---chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-------------hhHHHHHHHHHHHHHHH
Confidence 11111111111 233444444454445555555566667776566552 22344556677888899
Q ss_pred HHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc------
Q 009362 351 FVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP------ 424 (536)
Q Consensus 351 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 424 (536)
++.++++||+|+|+.+..+..+.+++.+++.+... .+.+...+..+..+.+........+++.+|+.+
T Consensus 278 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t 351 (428)
T PF13347_consen 278 PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT 351 (428)
T ss_pred HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc
Confidence 99999999999999999999999998888777652 124555555555566666666888899999886
Q ss_pred -ccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 425 -ARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 425 -~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
++..|..+|+.+....++..+++.+.+.+.+..|+
T Consensus 352 g~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 352 GRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred CCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 34468899999999999999999999988776654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=173.84 Aligned_cols=340 Identities=11% Similarity=0.042 Sum_probs=201.9
Q ss_pred hHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc----chhHHH-HHHHHHHHHHHHHhhhhh-c
Q 009362 42 IMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI----GRRRVY-GLALMLMVLSSLACGFSI-C 115 (536)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~~~-~ 115 (536)
..+.+.+.+ |++..++|.+.++..+..++..++.|+++||. ||||.. .++.+...+..++....+ .
T Consensus 31 l~~y~~~~~--------gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (448)
T PRK09848 31 LLSYYTDVA--------GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD 102 (448)
T ss_pred HHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCC
Confidence 345566667 99999999999999999999999999999996 777754 556555554444432212 1
Q ss_pred ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-ccchhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccc
Q 009362 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK-MTRGAFIAAVFSMQGF-----GILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 116 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~~~-----G~~i~~~~~~~l~~~~~~~~ 189 (536)
.........+++.-++.+++.+...+...++..|..++ ++|.+..+.-..+.++ |..++|.++... +.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~----g~-- 176 (448)
T PRK09848 103 WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS----PE-- 176 (448)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--
Confidence 11111123445556777888888887777877777654 6788877766554443 334444443321 10
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCC
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPS 268 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (536)
....+|.....+.+++.++. ++.....||+++. +.++...
T Consensus 177 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~----~~~~~~~------------------------ 217 (448)
T PRK09848 177 -----------EMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR----IVAQPSL------------------------ 217 (448)
T ss_pred -----------chhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC----CccCCCH------------------------
Confidence 00112222222222333322 2222344554321 1000000
Q ss_pred CCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhh
Q 009362 269 PPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIP 348 (536)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (536)
.+.++. .. +.+.+....+..++............|.++++.+|.++. .+........++.++
T Consensus 218 ---~~~~~~-l~--~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~~ 279 (448)
T PRK09848 218 ---KISLQT-LK--RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL------------FTVLVLVQNLVGTVA 279 (448)
T ss_pred ---HHHHHH-Hh--CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH------------HHHHHHHHHHHHHHH
Confidence 000111 11 113344455555555555556666677777776665433 233333444566777
Q ss_pred hHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc--
Q 009362 349 GYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR-- 426 (536)
Q Consensus 349 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 426 (536)
+.++.+++.||+|+|+.+.++..+..++.+.+.+... ...+...+..++.+.+.....+..+++.+|..|.+
T Consensus 280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 8889999999999999999998887777666654322 12233333333344444444566777777777643
Q ss_pred -----ccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 427 -----FRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 427 -----~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
.+|...|+.+....+|..+++.+.+.+.+..|
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46999999999999999999999998876554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=161.89 Aligned_cols=377 Identities=11% Similarity=0.068 Sum_probs=258.9
Q ss_pred CChhhhHHHHHHHHHHHHHhhhhhcccccccchhHH-HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 60 IPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRV-YGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
-+.+..|...++..+..++.+++.|.++|+.|+||. +-....+..++..+..++++- ..++..++.-.+..++...
T Consensus 55 ~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~---s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 55 SSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG---SYLLLLLLFLILASIGFEF 131 (438)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhcch
Confidence 345677888999999999999999999999998664 555666666666777777661 1267778888899999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAA 218 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 218 (536)
....-.+++.+..++++-++..++-.....+|..+.-++........+....+.. .-.-++.+...=|..+.++++.-+
T Consensus 132 s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~ri~~~l~A~W~l 210 (438)
T COG2270 132 SNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITII-LLGLPPADGEDVRITGLLAALWWL 210 (438)
T ss_pred hheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEE-eeccCccccccchhHHHHHHHHHH
Confidence 9999999999999999888888877777777776665554322211110000000 000011244557888888777666
Q ss_pred HH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHH
Q 009362 219 FT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLV 297 (536)
Q Consensus 219 ~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (536)
+. +.+++.+++.++.....++...+.-+++.. .+++. +..+.+....+..+..
T Consensus 211 i~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~-----------------------t~k~i---~~~~~i~~FLiA~~~~ 264 (438)
T COG2270 211 LFALPMILNVHDAEKISSPPPTALRNGFKELKS-----------------------TFKEI---RGRKNLVLFLIARFFY 264 (438)
T ss_pred HHHhHHHhcccccccccccchHHHHHHHHHHHH-----------------------HHHHH---hcccchHHHHHHHHHH
Confidence 54 556666777654210000111111111111 11111 1223566677778887
Q ss_pred HHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHH
Q 009362 298 DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIY 377 (536)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 377 (536)
.-+..+...+...+-...+|++.. ..........+..++|+++.|++.||+|.|+++..+.++..+..
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~------------~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSST------------ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 788888888888888866999887 44466777788889999999999999999998888888777665
Q ss_pred HHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccc
Q 009362 378 LAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDD 457 (536)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 457 (536)
+...+... .....++.+..+....+.+...-++..+.+|+++.++.+|+++..+...++.||++.+.+.+.+
T Consensus 333 ~~~~~~~~--------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 333 LYLIFLEG--------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred HHHHHccc--------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 55544433 2333444455555556667888899999999999999999999999999999999999998877
Q ss_pred ccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 458 NKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 458 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+ ..+..+....++..++.++.+ ..|+.++
T Consensus 405 g-----~~r~g~~~i~vll~iGl~~L~-~v~~~~~ 433 (438)
T COG2270 405 G-----SSRAGVLSIIVLLLIGLLLLL-RVKVPGR 433 (438)
T ss_pred c-----chhhHHHHHHHHHHhhHhhEE-eecCCCC
Confidence 6 245566666667777766666 5565533
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-18 Score=168.45 Aligned_cols=345 Identities=12% Similarity=0.043 Sum_probs=207.4
Q ss_pred hHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc----cchhHH-HHHHHHHHHHHHHHhhhhhcc
Q 009362 42 IMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL----IGRRRV-YGLALMLMVLSSLACGFSICT 116 (536)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~~~ 116 (536)
+...+.+.. |+++..+|.+..+.-+--++.-|+.|.++|| +||||. ++++.+..+++.+++...++.
T Consensus 32 l~~fyt~~~--------Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~ 103 (460)
T PRK11462 32 MMFFYTDIF--------GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL 103 (460)
T ss_pred HHHHHHHhh--------CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC
Confidence 344455556 9999999999999999999999999999995 698764 556767788877776655543
Q ss_pred cccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Q 009362 117 TKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN-KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDV 195 (536)
Q Consensus 117 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~ 195 (536)
.....+..+++.-++..++.......-.++..|+.+ +++|++..++...+..+|..+++.+...+....+.
T Consensus 104 s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~-------- 175 (460)
T PRK11462 104 SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG-------- 175 (460)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 222223456667777788888888888899999987 78999999999999999999998887777655442
Q ss_pred cccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhh
Q 009362 196 NKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPL 274 (536)
Q Consensus 196 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (536)
.....+|+....+.+++.+++.... ...+|.++. ++++.... +.
T Consensus 176 ----~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~----~~~~~~~~---------------------------~~ 220 (460)
T PRK11462 176 ----DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA----PPTTTSMR---------------------------ED 220 (460)
T ss_pred ----CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC----CccCCCHH---------------------------HH
Confidence 0223578888777666665554333 334554321 00000000 01
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 009362 275 ISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354 (536)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (536)
++....++.++.+....+..........+...|...|. .|.. . ..........++.+++.++++
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~~-~------------~~~~~l~~~~i~~iig~~l~~ 284 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI---LGTP-E------------VFVAFLTTYCVGNLIGSALAK 284 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCCh-H------------HHHHHHHHHHHHHHHHHHHHH
Confidence 11111112112222122222222222233333333332 2211 1 122344556677788889999
Q ss_pred HHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccc-------ccc
Q 009362 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFP-------ARF 427 (536)
Q Consensus 355 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~ 427 (536)
++.||+++|+....+..+..+..+++.+... ...+...+ ..+..+++.....+..+++..|..+ .+.
T Consensus 285 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~ 358 (460)
T PRK11462 285 PLTDWKCKVTIFWWTNALLAVISLAMFFVPM-----QASITMFV-FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL 358 (460)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhch-----hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc
Confidence 9999999998876554444333333222222 11112222 2222233333334555666666655 333
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 428 RSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 428 ~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
.|...+.......+|..+++.+.|.+.+..|+
T Consensus 359 ~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 359 TGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35555777788999999999999998876553
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=174.38 Aligned_cols=406 Identities=12% Similarity=0.125 Sum_probs=280.0
Q ss_pred HHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 22 IIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
+.+.++..+..++....+...+..+.+.| +++.++.|++.+.+-++..+...+..+...|.-|-+.+-+|++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF--------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~ 170 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRF--------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLV 170 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhc--------CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechh
Confidence 34455566777777788888888999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh------------------cc--------------------------cccc--hhhHHHHHHHHHhhh
Q 009362 102 LMVLSSLACGFSI------------------CT--------------------------TKQC--VLGSLGFFRFLLGVG 135 (536)
Q Consensus 102 ~~~~~~~~~~~~~------------------~~--------------------------~~~~--~~~~l~~~r~l~G~~ 135 (536)
+++++++++++-+ +. +... .+..++++.++.|+|
T Consensus 171 ~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG 250 (735)
T KOG3626|consen 171 LMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG 250 (735)
T ss_pred HHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence 9999999987640 00 0000 234788899999999
Q ss_pred ccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhH
Q 009362 136 IGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI 215 (536)
Q Consensus 136 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 215 (536)
....++.+.+|+-|...+++-...+|+...+..+|.++|.++++++.+...+....+..+++.|+.--..|..-|++.+.
T Consensus 251 ~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~ 330 (735)
T KOG3626|consen 251 ATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA 330 (735)
T ss_pred CCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877653233344555555555568888888888
Q ss_pred HHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHh-hhhhhhHHHHHHHH
Q 009362 216 PAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFL-RRHGRDLFACATSW 294 (536)
Q Consensus 216 ~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 294 (536)
+.++..+.++++|...+. .+++ .++ ++.+. .+. +.+..+....-.+..+.+.+... -...+.+...++..
T Consensus 331 ~~~~~a~p~f~fPk~lp~---~~~~-~~~-~~~~~-~k~---~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~ 401 (735)
T KOG3626|consen 331 LLLFSAVPLFFFPKELPK---SQKR-KRA-RDLHV-LKT---ESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLAS 401 (735)
T ss_pred HHHHHHHHHHhCcccCcc---cccc-chh-hhhcc-ccc---ccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 888888888888876542 1111 000 00000 000 00000000001111222222222 22345677788888
Q ss_pred HHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc--hhHHHHHhHHH
Q 009362 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIG--RVAIQALGFFF 372 (536)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~ 372 (536)
.+....+.++.+|+|.|+++++|.++.. ...+...+...+..+|.+++|++++|+. .|....+..+.
T Consensus 402 ~~~~~~~~G~~tFlPKyLE~Qfg~sas~-----------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 402 VIESLAITGYITFLPKYLETQFGISASL-----------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred HHHHHHHhhHHHhhHHHHHHHcCCCHHH-----------HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence 8888999999999999999999998874 2334445556667788889999999974 34444444444
Q ss_pred HHHHHHH---hhccc----------------------c-----c------------------------------------
Q 009362 373 MGVIYLA---IGVPY----------------------S-----Y------------------------------------ 386 (536)
Q Consensus 373 ~~~~~~~---~~~~~----------------------~-----~------------------------------------ 386 (536)
..+.++. ..+.. . .
T Consensus 471 ~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~ 550 (735)
T KOG3626|consen 471 SVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGT 550 (735)
T ss_pred HHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccC
Confidence 4333333 11110 0 0
Q ss_pred ------------cc-----C------------CCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHH
Q 009362 387 ------------KW-----S------------KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGA 437 (536)
Q Consensus 387 ------------~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 437 (536)
.. . .......+++.++..++...+. +..+.++.+.+|++.|..++|+..+
T Consensus 551 ~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~-~p~~~i~LR~V~~e~ks~AlG~~~~ 629 (735)
T KOG3626|consen 551 SDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGA-VPGMLIVLRCVPPEEKSFALGFQWM 629 (735)
T ss_pred CCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhcc-CcceEEEEEccCchhchhhhHHHHH
Confidence 00 0 0012233334444444444443 4555677899999999999999987
Q ss_pred HHH-HHHHHHHHHHHhhhcc
Q 009362 438 FGK-VGAIIGTVAFLWASHD 456 (536)
Q Consensus 438 ~~~-~g~~~~~~~~~~l~~~ 456 (536)
+.+ +|.+-+|+++|++.|.
T Consensus 630 ~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 630 LIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHhcCCchHhhhhhHhh
Confidence 655 5888999999999875
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=162.66 Aligned_cols=287 Identities=13% Similarity=0.050 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc-ccc
Q 009362 122 LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK-RQH 200 (536)
Q Consensus 122 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 200 (536)
++.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|.+++.+......+ ..... ..+
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~----~~~~~~~~~ 85 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGD----LSMQVATAN 85 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcc----hhhhhhhhh
Confidence 3999999999999999999999999999999999999999999999999999999999886321100 00000 000
Q ss_pred CCCCchhHHHHHhhHHHHHHHHHHHc--CCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHH
Q 009362 201 QADIAWRLILMLGSIPAAFTYYWRMT--MPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKR 278 (536)
Q Consensus 201 ~~~~~w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (536)
.+...|+++|++.+...++..+.+.+ +||..+ ++.++..+. +... ++.
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~~~~~-------------------~~~~-----~~~ 135 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVARVSSG-------------------DTTQ-----KTS 135 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccccccc-------------------cccc-----hhh
Confidence 01247999999655554444333333 344321 110000000 0000 011
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh--cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009362 279 FLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY--IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356 (536)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 356 (536)
..+ .+.++...+..++......+...|.+.|+.+. .|+++. ...........+.++|+++++++
T Consensus 136 ~~~--~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~------------~a~~~~s~~~~~~~iGr~~~~~l 201 (310)
T TIGR01272 136 AFQ--FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPED------------QAAHFTAYTWGGAMVGRFIGSAV 201 (310)
T ss_pred HHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23455566667777778889999999999753 467665 45567788888999999999999
Q ss_pred HHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhH
Q 009362 357 IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISG 436 (536)
Q Consensus 357 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 436 (536)
.||+++|+.+.++..+..++.++...... ...... ....+++.....|...+...+..|++ .+++.++.
T Consensus 202 ~~r~g~~~~l~~~~~l~~~~~~l~~~~~~--------~~~~~~-~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~- 270 (310)
T TIGR01272 202 MPMISQGRYLAFNAFLAVLLSIGAALTHG--------YVAMWF-VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL- 270 (310)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-
Confidence 99999999888887777766544443322 111222 22334444455688788888888754 56777775
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHH
Q 009362 437 AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILG 473 (536)
Q Consensus 437 ~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 473 (536)
..+.+|+++.|.+.|.+.| ..|.+.++++..
T Consensus 271 ~~~~~Gg~i~P~l~G~lad------~~g~~~a~~v~~ 301 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLAD------CLGIQLAFALPV 301 (310)
T ss_pred HHHHhcchHHHHHHHHHHH------hccchHHHHHHH
Confidence 6778999999999999955 456677776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=167.44 Aligned_cols=416 Identities=14% Similarity=0.132 Sum_probs=257.1
Q ss_pred CcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch
Q 009362 13 KTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR 92 (536)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 92 (536)
..++.+|+.+.++.+..++.+.....+.+..-+..+++ |.+.+.+..|++.++..++.+++++..|.+..|.+.
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~ 100 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS 100 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCC
Confidence 34567889999999999999988888777665555553 227888999999999999999999999999999997
Q ss_pred -hHHHHHHHHHHHHHHHHh-hhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHH
Q 009362 93 -RRVYGLALMLMVLSSLAC-GFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFG 170 (536)
Q Consensus 93 -r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 170 (536)
|+.++.|.++..++.++. ++..- ..++.+.++++|++.|+|.| .....-+|+++....++|.++++....+..+|
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~--~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYV--PNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 889999999999999988 33322 12245899999999999987 56778999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHH-HHHHhH
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVM-QAAKDM 248 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~-~~~~~~ 248 (536)
..+||.++..+.-.... ...+.++ ..-.-+..+-|+.++..++. +++.+++.|.++....++.+.+ +.+...
T Consensus 178 ~ilGp~~q~~f~~Lg~~----G~~i~~~--~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~ 251 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEK----GFMILPG--LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDI 251 (488)
T ss_pred HHHhHHHHHHHhhhcCC----ceEEcCc--ceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccch
Confidence 99999998877533221 0111110 01112345566777777765 3444567787653211111111 000000
Q ss_pred HHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 249 EKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
+ .....+..++..+.+.+..+...+.........+.+....++++..+.-
T Consensus 252 ~--------------------------~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av---- 301 (488)
T KOG2325|consen 252 E--------------------------KVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAV---- 301 (488)
T ss_pred h--------------------------hhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHH----
Confidence 0 0111112223455566666666666666666666666666788776421
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HhhchhHHHHHhHHHHHHHHHHhhccccccc-C----C------------
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFI-DRIGRVAIQALGFFFMGVIYLAIGVPYSYKW-S----K------------ 390 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~----~------------ 390 (536)
...+....+..+..+.-.+...+.. .++.+|..+..+.++...+..+......... + .
T Consensus 302 ----~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~ 377 (488)
T KOG2325|consen 302 ----LYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYS 377 (488)
T ss_pred ----HhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccch
Confidence 1122222222222222222222222 2334455566665555555444433322100 0 0
Q ss_pred -------CchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccccccc
Q 009362 391 -------HTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNAT 463 (536)
Q Consensus 391 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 463 (536)
...+..++...+..+...........++-+|+..++.+++..|+....+.++..++|.+...+.. ..
T Consensus 378 wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~------~~ 451 (488)
T KOG2325|consen 378 WCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT------LS 451 (488)
T ss_pred hhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH------hc
Confidence 00111122222222222222233455667899999999999999999999999999998888744 44
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 009362 464 GVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 464 g~~~~~~~~~~~~~~~~~~~ 483 (536)
|++..+.+.++..++...+.
T Consensus 452 g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 452 GPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 66666666555554444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-21 Score=189.18 Aligned_cols=407 Identities=12% Similarity=0.114 Sum_probs=3.0
Q ss_pred HHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHH
Q 009362 27 MGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLS 106 (536)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 106 (536)
+..+......+.....++.+.+.| +++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF--------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g 81 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRF--------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG 81 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence 334444666677778888999999 999999999999999999999999999999988888999999999999
Q ss_pred HHHhhhhh----ccc----------------------------------------ccchhhHHHHHHHHHhhhccCcchh
Q 009362 107 SLACGFSI----CTT----------------------------------------KQCVLGSLGFFRFLLGVGIGGDYPL 142 (536)
Q Consensus 107 ~~~~~~~~----~~~----------------------------------------~~~~~~~l~~~r~l~G~~~g~~~~~ 142 (536)
++++++-+ .|. ....+..++++.++.|+|....++.
T Consensus 82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL 161 (539)
T PF03137_consen 82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL 161 (539)
T ss_dssp ----------------------------------------------------------------------SSS-------
T ss_pred HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence 99887521 110 0002468899999999999999999
Q ss_pred hhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC---CcccccccCCCCchhHHHHHhhHHHHH
Q 009362 143 SATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRD---NDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 143 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
+.+|+-|..++++-+..+|+...+..+|.++|.++++.+++.+.+....| ...+|.|+.--..|..-|++.++..++
T Consensus 162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654422211 234444443334577777777777777
Q ss_pred HHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHh-hhhhhhHHHHHHHHHHHH
Q 009362 220 TYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFL-RRHGRDLFACATSWLLVD 298 (536)
Q Consensus 220 ~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 298 (536)
..+.++++|+..+. .++.+++.+....+..+.+.++.++.+..+......+.+.+... --..+.+....+......
T Consensus 242 ~aipl~~FPk~lp~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~ 318 (539)
T PF03137_consen 242 SAIPLFFFPKKLPG---TSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCccCCC---cccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 66666677765332 11111110000000000000000000000000111122221111 122345666777777777
Q ss_pred HHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc--hhHHHHHhHHHHHHH
Q 009362 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIG--RVAIQALGFFFMGVI 376 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~ 376 (536)
....++.+|.|.|++.+++.++.+++ .+...+...+.++|.+++|++++|++ .|..+....+...++
T Consensus 319 ~~~~G~~tF~pKylE~QF~~sas~A~-----------~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 319 FIVSGFATFLPKYLESQFGLSASQAS-----------LLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHH-----------HHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999887533 23445555677888999999999974 344444444444443
Q ss_pred HHHhhccc--------------ccc--------------------------cC---C---CchH-HHHHHHHHHHHHHhc
Q 009362 377 YLAIGVPY--------------SYK--------------------------WS---K---HTNF-GFMFLYALTFFFANF 409 (536)
Q Consensus 377 ~~~~~~~~--------------~~~--------------------------~~---~---~~~~-~~~~~~~~~~~~~~~ 409 (536)
.+.+.... .+. .. . ...+ ..+++..+..++...
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 33311100 000 00 0 0111 222222233333333
Q ss_pred CccccccccccccccccccchhhhHhHHHHH-HHHHHHHHHHHhhhcc
Q 009362 410 GPNTTTFIVPAELFPARFRSTCHGISGAFGK-VGAIIGTVAFLWASHD 456 (536)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~~~l~~~ 456 (536)
...|. ....-+.+|+++|+.+.|+...+.+ +|.+-+|+++|.+.|.
T Consensus 468 ~~~p~-~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPS-TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------
T ss_pred cccch-heeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 33333 3455688999999999999987655 4889999999999763
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=150.07 Aligned_cols=391 Identities=14% Similarity=0.085 Sum_probs=233.5
Q ss_pred CCCChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhh--cccccchhhHHHHHHHHHhh
Q 009362 58 FQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSI--CTTKQCVLGSLGFFRFLLGV 134 (536)
Q Consensus 58 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~ 134 (536)
+|.++++..-+.+.|..-.-+..+++|+++||+ |+|+++.+|.++..+|.++.+.+. .. ..++++-.+.++
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~------~gl~i~L~~I~i 129 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP------GGLYIGLALIIV 129 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccc------cHHHHHHHHHHh
Confidence 579999998888888888888899999999996 999999999999999999999885 44 789999999999
Q ss_pred hccCcchhhhHhhhccCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHH
Q 009362 135 GIGGDYPLSATIMSEFANKM--TRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILML 212 (536)
Q Consensus 135 ~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~ 212 (536)
|.|..-+...+++.|.+|++ +|-..++++.++.++|..++|++.+++ .++.||...|.+
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~-------------------~~~~g~~~gF~~ 190 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL-------------------AINYGWHVGFGL 190 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH-------------------HHhhCHHHHHHH
Confidence 99999999999999999864 478889999999999999999999999 467789999999
Q ss_pred hhHHHHHHHHHHHcCCCC----c---chhhhhhhcHH-HHHHhHHHHhcc------ccccccc--------------cCC
Q 009362 213 GSIPAAFTYYWRMTMPES----A---RYTALVEQNVM-QAAKDMEKVLDV------SISQIAE--------------EYP 264 (536)
Q Consensus 213 ~~~~~~~~~~~~~~~~es----p---~~l~~~~~~~~-~~~~~~~~~~~~------~~~~~~~--------------~~~ 264 (536)
+++-....++.....+.. + +....+.+... ............ +.+.... .+.
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~ 270 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEA 270 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776665554433321 1 10000000000 000000000000 0000000 000
Q ss_pred CCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh-cCCCCCCccchhhHHHHHHHHHHHHHHH
Q 009362 265 LPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY-IDGNGHDQTRSAFEEAFKVARHQAIFAI 343 (536)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (536)
...++ .. -.+++.....+.++...+.|.+..-.......+........ +|++-. .+ ..-....
T Consensus 271 ~~~~~--~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp------------~~-~fQslNp 334 (498)
T COG3104 271 FRSPK--VF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVP------------PA-WFQSLNP 334 (498)
T ss_pred hccCc--cH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecC------------HH-HHHhhCH
Confidence 00000 00 00100001111111222222222222222222222222221 221111 11 2223333
Q ss_pred HhhhhhHHHHHHHHHhhchh-------HHHHHhHHHHHHHHHHhhcccc-ccc-CCCchHHHHHHHHHHHHHHhcCcccc
Q 009362 344 CSTIPGYFVTVFFIDRIGRV-------AIQALGFFFMGVIYLAIGVPYS-YKW-SKHTNFGFMFLYALTFFFANFGPNTT 414 (536)
Q Consensus 344 ~~~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (536)
+..++..++..++..+.+++ .-+.++..+++.+++++..... ... ....+.++++...++..++.....|+
T Consensus 335 ~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpv 414 (498)
T COG3104 335 FFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPV 414 (498)
T ss_pred HHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHH
Confidence 33444444555555554332 2355666666776666665511 112 23356677777788888999999999
Q ss_pred ccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 415 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
..+++..+.|+...+..+++.......+..++..+.+.........+.......|+.++...++..+..+...|+
T Consensus 415 GLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 415 GLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998888888877776666666666555532111111334456677888888777776666534443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=140.99 Aligned_cols=366 Identities=13% Similarity=0.096 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLA 99 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~ 99 (536)
.......+-.+..++.........+...+.+.++.++ .+....+.-.....+...+.++..|.++||+|||..+.+.
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~---~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~ 98 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL---ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLP 98 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccc---hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHH
Confidence 3444444555666666555556666555555222111 1111122222244677788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhc--cCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 100 LMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGI--GGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
.+...+..++..+.. + |.++ +.|+.. +.......++++|....++|....++.......+..++|.+
T Consensus 99 ~~~~~l~~~~~~~~~-~------~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~ 167 (463)
T KOG2816|consen 99 LFGTILPALCLLFQG-Y------WFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPAL 167 (463)
T ss_pred HHHHHHhHHHHHHHH-H------HHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999988888777766 2 3333 444432 34566778999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhcccc
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSI 256 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (536)
++.+.+. .|.-.+|.+..+..++. ....+++||+-.. +++++ ....+......
T Consensus 168 ~~~~~~~-------------------~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-----~~~~~--~~~~~~~~~~~ 221 (463)
T KOG2816|consen 168 GGYLVKF-------------------LGIALVFLIAAASGILSLLYMLLFLPESLQE-----KERSD--ATLRELTPGSL 221 (463)
T ss_pred HHHHHHh-------------------cCchHHHHHHHHHHHHHHHHHhhccccccCc-----ccccc--ccccccCCCcc
Confidence 9999543 45778888877777765 4555778987542 11111 00000000000
Q ss_pred ccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHh-hhhhhhHHhhhhcCCCCCCccchhhHHHHHHH
Q 009362 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYS-SNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVA 335 (536)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 335 (536)
.........+...+ .+..|..+.++...+.......+ ..-..+.+++..+|++..+.+
T Consensus 222 -------~~~~~~~~~~~~~~---~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s----------- 280 (463)
T KOG2816|consen 222 -------DSSHVADAFQSLTK---VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS----------- 280 (463)
T ss_pred -------cchhhhhhhhhhcc---cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH-----------
Confidence 00000000111111 11223333333333333222222 221336677777888877422
Q ss_pred HHHHHHHHHhhhhhHHH-HHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccc
Q 009362 336 RHQAIFAICSTIPGYFV-TVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~-~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (536)
...........++.++ .+.+...+|.|+....|.....+..+.+++... .+.+..... .........|.
T Consensus 281 -~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~--------~w~~~~~~v-~~~~~~~~~pa 350 (463)
T KOG2816|consen 281 -DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE--------TWMMFAAGV-VVALAGIVFPA 350 (463)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc--------chhhhHHHH-HHHhhcchhHH
Confidence 2233333333444444 447888899999999999999998888888776 222222222 22333444578
Q ss_pred ccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcc
Q 009362 415 TFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHD 456 (536)
Q Consensus 415 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~ 456 (536)
..+..+...+++.+|++.++...+..+.+.++|.+.+.+...
T Consensus 351 ~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 351 IRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888889999999999999999999999999999999988543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-14 Score=130.63 Aligned_cols=362 Identities=16% Similarity=0.121 Sum_probs=229.4
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccc-----hhHHHH-HHHHHHHHHHHHhhhhhcc--------cccc--hh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG-----RRRVYG-LALMLMVLSSLACGFSICT--------TKQC--VL 122 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~--~~ 122 (536)
+++..-.+.+.++..+... ..+.+|+.+|+.+ ||..++ .|.++...+..+..++.-. +.+. ..
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 8998899998888877665 5899999999999 776554 5555555555554443110 0011 12
Q ss_pred hHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCC
Q 009362 123 GSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQA 202 (536)
Q Consensus 123 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (536)
....+.-.+.|+|.+...+...++++|..|+++|+++.++...+.-+|.+++..+.+.+++-++.
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~--------------- 154 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP--------------- 154 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH---------------
Confidence 35566778899999999999999999999999999999999999999999999999988543221
Q ss_pred CCchhHHHH--HhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHh
Q 009362 203 DIAWRLILM--LGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFL 280 (536)
Q Consensus 203 ~~~w~~~f~--~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (536)
-|..-. ..++..+...++..+-.|.++.. . .+.. .+++....+..++...
T Consensus 155 ---~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~-~-~~~~-----------------------~~~~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 155 ---ERLIQVIQGVALIALLLNLIALWGQEPRRSR-R-AAAA-----------------------ERPRPPFREAWRQVWA 206 (403)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhcccCCcc-c-ccCC-----------------------CCCCccHHHHHHHHHh
Confidence 222222 22233333323333333432210 0 0000 0001111111111111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-h
Q 009362 281 RRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID-R 359 (536)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~ 359 (536)
.+..++ +....+.....++.....+.+|-.+++|++..+ ..-.......+.++|....+++.. |
T Consensus 207 ~~~a~~---f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~e------------TT~Lta~~~~G~L~G~~~~g~~l~~~ 271 (403)
T PF03209_consen 207 SPQARR---FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGE------------TTRLTAFWGGGTLLGMLLAGFLLSRR 271 (403)
T ss_pred CCChhH---HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111122 233334445667777888888888889998873 445666666777778777787766 6
Q ss_pred hchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHH
Q 009362 360 IGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFG 439 (536)
Q Consensus 360 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 439 (536)
.++++...++.....+++.++....... + .+.+....+..++.+........+...++.+++..|..+|.....+
T Consensus 272 ~~~~~~a~~G~~~~~~~f~lii~a~~~~----~-~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQ 346 (403)
T PF03209_consen 272 LGKKRTAALGCLLGALAFALIILAGPLG----S-PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQ 346 (403)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcc----c-chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHH
Confidence 7888888888888888877766554411 1 2222333333333333333444556678888888999999999999
Q ss_pred HHHHHHHHHHHHhhhccccc----ccccccchhhHHHHHHHHHHHHHhh
Q 009362 440 KVGAIIGTVAFLWASHDDNK----VNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 440 ~~g~~~~~~~~~~l~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+...++..+.|.+.|.... ....+|..+|.+=+...+++..+..
T Consensus 347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764321 1345677777777777766666554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=149.13 Aligned_cols=182 Identities=15% Similarity=0.074 Sum_probs=133.6
Q ss_pred hhhhHhhh-hhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHH-hh--hhh
Q 009362 39 IPPIMKLL-GRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLA-CG--FSI 114 (536)
Q Consensus 39 ~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~~--~~~ 114 (536)
.....|.+ .+++ |.+..+.++..+...++..++.++.|+++||+|||+++.++.++..++.+. .. .+.
T Consensus 269 ~~~~~p~~l~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 340 (490)
T PRK10642 269 LLTYMPSYLSHNL--------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN 340 (490)
T ss_pred HHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445554 4566 888888888888999999999999999999999999988887654443332 21 223
Q ss_pred cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 115 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
+. ..++++|++.|++.+........++.|.+|++.|++.++.......++..++|.+.+++.+..
T Consensus 341 ~~------~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--------- 405 (490)
T PRK10642 341 VI------GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--------- 405 (490)
T ss_pred CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 33 677888999998877777778889999999999999999744444555677888888775322
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhh----hhcHHHHHHhHHHHh
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALV----EQNVMQAAKDMEKVL 252 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~----~~~~~~~~~~~~~~~ 252 (536)
.+|+.++++..+++++.++..+++||+|+++..+ +++.+|+++.+.+.+
T Consensus 406 ---------~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 406 ---------QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 2478777776667777666667789999986432 356677777776665
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=118.95 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhh
Q 009362 69 LALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMS 148 (536)
Q Consensus 69 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 148 (536)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.+++ +.+.+.+++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI------TVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455678889999999999999999999999999999999888888876 88899999999999999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-HcC
Q 009362 149 EFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTM 227 (536)
Q Consensus 149 e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~ 227 (536)
|.+|+++|++..++......+|..+++.+++.+. +..+|++.+++.++..++..+.. ++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-------------------QFLGWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-------------------cccchHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999883 45579999998777766654443 444
Q ss_pred CC
Q 009362 228 PE 229 (536)
Q Consensus 228 ~e 229 (536)
||
T Consensus 139 ~~ 140 (141)
T TIGR00880 139 PE 140 (141)
T ss_pred CC
Confidence 54
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=140.51 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhH
Q 009362 66 SPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSAT 145 (536)
Q Consensus 66 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 145 (536)
.+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++. ..+++.+++.|++.++.++...+
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~------~~ll~~~~l~g~~~~~~~~~~~a 671 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE------SAMIALLCLFGGLSIAAWNALDV 671 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778999999999999999999999999999999999998888875 67788888999988888999999
Q ss_pred hhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH
Q 009362 146 IMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM 225 (536)
Q Consensus 146 ~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 225 (536)
+++|++|.+.|++++|+..++..+|.+++|.+++.+... +...+|++.+++.++..++..
T Consensus 672 ~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--------------------~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 672 LTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--------------------TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887432 346778777777777666666
Q ss_pred cCCCCcc
Q 009362 226 TMPESAR 232 (536)
Q Consensus 226 ~~~esp~ 232 (536)
++||+..
T Consensus 732 ~LPET~~ 738 (742)
T TIGR01299 732 KLPDTRG 738 (742)
T ss_pred hCCCCcc
Confidence 7898643
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=133.59 Aligned_cols=157 Identities=12% Similarity=0.035 Sum_probs=127.4
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcc
Q 009362 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDY 140 (536)
Q Consensus 61 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 140 (536)
+.++.+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+.....+. ...++.+++.+++.|++.+...
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~--~~~~~~l~l~~~l~g~~~~~~~ 326 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE--YFGYALLFLSMIVYGCAFDFFN 326 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 44677999999999999999999999999999999999999998887766653210 0012567788999999999888
Q ss_pred hhhhHhhhccCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHH
Q 009362 141 PLSATIMSEFANKMTRGAFIAAVF-SMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 141 ~~~~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
+....++.|++|+++|++++++.+ ...++|.++||++++.+.+.++. ....||+..|.+.++..++
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~-------------~~~~~~~~~f~~~~~~~~i 393 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA-------------YGTFDWQTMWLFFAGYIAI 393 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-------------ccCCchHHHHHHHHHHHHH
Confidence 999999999999999999999997 67889999999999999776542 1225799999987777666
Q ss_pred H-HHHHHcCCCCcc
Q 009362 220 T-YYWRMTMPESAR 232 (536)
Q Consensus 220 ~-~~~~~~~~esp~ 232 (536)
. ++..++++|+.+
T Consensus 394 ~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 394 LAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHhCCccc
Confidence 4 445566787754
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=133.72 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+.......+.............|.+.++ +|.++. ..+.......++.+++.++.|+++||+|||+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 85 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAE-WGLDPV------------QLGFLFSAGLIGMAFGALFFGPLADRIGRKRVL 85 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhc-cCCCHH------------HHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 3334444444444455556667776666 777765 344566677788888999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+..++.++...... .+.+.+..++.+++.....+...++..|.+|++.|+++.|+......+|..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 157 (398)
T TIGR00895 86 LWSILLFSVFTLLCALATN--------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157 (398)
T ss_pred HHHHHHHHHHHHHHHHccc--------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence 9998888887777665443 33444444555555555567888899999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+.+.+.+.+ ..+|+..+++.++++++..++.+.+.||+.+
T Consensus 158 ~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 158 GFLAGWLIP------VFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred HHHHHHHhh------cccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 999999854 5578888888876666666666556776543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=132.23 Aligned_cols=177 Identities=14% Similarity=0.041 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
++..++.+++.....+....+.|.+.++ +|+++. ..+.......++..++.++.|++.||+|||+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~ 91 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRS------------DIGLLATLFYITYGVSKFVSGIVSDRSNARYFM 91 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHH------------HHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence 3444555555555555667788888877 888866 444666777888888999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
.++.++.+++.++...... .+.+.+..++.++......+....+..|.+|+++|++++|+.+....+|..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 163 (434)
T PRK11663 92 GIGLIATGIINILFGFSSS--------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALI 163 (434)
T ss_pred HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877766543 33333333333333333446777888999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
|.+.+.+. +..+|+..|++.++++++..++..++++|+
T Consensus 164 ~~~~~~l~------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 164 PLVVGAIA------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHH------HcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999984 356899999988877665554444355554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=125.37 Aligned_cols=387 Identities=11% Similarity=0.093 Sum_probs=217.0
Q ss_pred hhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-----chhHHHHHHHHHHHHHHHHhhhhh
Q 009362 40 PPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-----GRRRVYGLALMLMVLSSLACGFSI 114 (536)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~~~~~~~~~~~~~~~~~~~~ 114 (536)
....+.+.+++ ++++++...+.+...+...+- +++|.++|.+ .||+-++++.++..++.+..+..+
T Consensus 10 ~~~~~~l~~~l--------~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~ 80 (433)
T PF03092_consen 10 LAIYPFLKDDL--------GLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP 80 (433)
T ss_pred HHHHHHHHHHc--------CCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 45667788888 999999999888888877665 7889999976 255566777777766666555544
Q ss_pred cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009362 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN--KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRD 192 (536)
Q Consensus 115 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~ 192 (536)
.. ..+.....+.-++..+|......++-+++.|... ++.||...+.......+|.+++..+++.+.
T Consensus 81 ~~--~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~---------- 148 (433)
T PF03092_consen 81 AS--ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL---------- 148 (433)
T ss_pred cc--cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----------
Confidence 31 1123566677788889999999999999999884 345788888888999999999999999884
Q ss_pred CcccccccCCCCchhHHHHHhhHHHHHHHHH-HHcCCCCcchhhhhhhcH---HHHHHhHHHHhccccccccccCCCCCC
Q 009362 193 NDVNKRQHQADIAWRLILMLGSIPAAFTYYW-RMTMPESARYTALVEQNV---MQAAKDMEKVLDVSISQIAEEYPLPPS 268 (536)
Q Consensus 193 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (536)
+..++|..|.+.+++..+..+. .+..+|.++. .+.+.. ++..+......
T Consensus 149 ---------~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~~~~~---------------- 201 (433)
T PF03092_consen 149 ---------DSFGPQGVFLISAALPLLMLIVALFLLEERKVR--PADEVFSFGKEEVPCLFGSF---------------- 201 (433)
T ss_pred ---------hcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc--ccchhhcccccccchhhHHH----------------
Confidence 4456788888877666655444 3444442110 000000 00000000000
Q ss_pred CCChhhhhHHHhhhhhhhHHHHHH-HHHHHHHHHHhhhhhhhHHhhhhcC---CCCCCccchhhHHHHHHHHHHHHHHHH
Q 009362 269 PPQYPLISKRFLRRHGRDLFACAT-SWLLVDIVFYSSNLFQSKIYHQYID---GNGHDQTRSAFEEAFKVARHQAIFAIC 344 (536)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (536)
+.....+++.... +.++...+ ..++............-.+..+..+ +++. .-+....+..+
T Consensus 202 ~~~~~~l~~~~~~---~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~------------f~~~~~~vg~~ 266 (433)
T PF03092_consen 202 REQLSELWRALQQ---RAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPS------------FYGTLSIVGSI 266 (433)
T ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHH------------HHHHHHHHHHH
Confidence 0000011111111 22222222 1111111111000000001112233 2222 22233355666
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccC----CCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWS----KHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
+.++|..+......+..-|+++....++..+..+.-..... .|+ -.+.+..+.--.+..........|. ..+++
T Consensus 267 ~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~-~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a 344 (433)
T PF03092_consen 267 ASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVT-RWNLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAA 344 (433)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEE-EEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHH
Confidence 66666666666666667777777766665554333222111 111 0111222222222333333333333 35678
Q ss_pred ccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc--ccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK--VNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 421 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
|+.|+..-|+.+++..++.++|..++..+...+.+..+. .+..+.....++..++.++...+.. ++|+.++
T Consensus 345 ~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~-lLp~~~~ 417 (433)
T PF03092_consen 345 RLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF-LLPPQKR 417 (433)
T ss_pred HHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH-HcCCCch
Confidence 999999999999999999999999999888888765541 1112233444555555555555554 5665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=130.53 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+.++.+.+.+++...-........|.+.++ +|++.. ..+.......++..++.+..|++.||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-~~~s~~------------~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~ 74 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKD-LGLSAT------------MFGLAATLFYAAYVICGIPSNIMLAIIGARR 74 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhh-cCCCHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHhChHH
Confidence 344455555555455555555566644444 888877 3446667777888888999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
++..+.++.+++.++..+..+ +..+.+.-++.+++..+..+....++.|.+|+++|++++|+.+....+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 75 WIAGIMVLWGIASTATMFATG--------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888776544 344444445555555555677777889999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+++.+.+++.+..+..+..||+.+|++.++..++..++.++++||+++
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 999999988643211234689999999888887776666667777654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=122.88 Aligned_cols=188 Identities=12% Similarity=0.046 Sum_probs=145.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 009362 277 KRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFF 356 (536)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 356 (536)
+.+++...+.++...+.+....+.--.+..-.|.+.++ .|++..| -+.......+..-++.++.|.+
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~------------lG~i~s~f~i~YG~sKf~~G~~ 87 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQ------------LGILGSAFSITYGVSKFVMGVL 87 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHH------------HHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444556666666666666666677777877777 7777764 3366666777778888899999
Q ss_pred HHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhH
Q 009362 357 IDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISG 436 (536)
Q Consensus 357 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 436 (536)
+||.+.|..+..+.++++++.+++++... ...+.++..+.+.+...-.|.....+..-+|+++||+..++-|
T Consensus 88 sDr~npr~fm~~gLilsai~nil~Gfs~s--------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn 159 (448)
T COG2271 88 SDRSNPRYFMAFGLILSAIVNILFGFSPS--------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWN 159 (448)
T ss_pred cccCCCceeehHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEeh
Confidence 99999999999999999999999998776 4444555444444444444788888899999999999999999
Q ss_pred HHHHHHHHHHHHHH--HhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 437 AFGKVGAIIGTVAF--LWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 437 ~~~~~g~~~~~~~~--~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+..++|+.+.|.+. +++ .++.+|+.+|++-++++++..++.++..+++.
T Consensus 160 ~shNiGGal~~~~~~la~~------~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 160 TSHNIGGALAPLVALLAFF------AFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred hhhhcccchHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999998 777 34568999999999999888888876665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-13 Score=130.54 Aligned_cols=178 Identities=10% Similarity=0.010 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.++.+.+..++...+.+....+.|.++++.+|++.. ..+.......++.+++.+..|+++||+|||++
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~------------~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~ 75 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVD------------LIGYAMTIALTIGVVFSLGFGILADKFDKKRY 75 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 466667777777888888888999999877898887 34466666677788889999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+..+..++.+.+.+..+ .+..++.....+.......+...++..|..|++.|+++.|+.+...++|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~i 147 (395)
T PRK10054 76 MLLAITAFASGFIAIPLVNN--------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTV 147 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 99888888777776655443 2222222222222222334667778899999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
+|.+.+.+.+ .+|+.+|++.+++++++.++..++.|+.
T Consensus 148 gp~l~~~l~~-------~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 148 GPPLGTLLVM-------QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHH-------hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998842 3788899988888777766555445544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=128.31 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=125.3
Q ss_pred hhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhccccc
Q 009362 41 PIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ 119 (536)
Q Consensus 41 ~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (536)
...|. +.+++ ++++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.
T Consensus 237 ~~~p~~l~~~~--------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 305 (393)
T PRK15011 237 INMPLFIINEL--------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSP--- 305 (393)
T ss_pred HHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence 34454 45667 9999999999888888888999999999999999998887776666555544455554
Q ss_pred chhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccc
Q 009362 120 CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199 (536)
Q Consensus 120 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (536)
+.+++.+++.+++.|...+....+..|.+| ++|++++++.+....+|..+++.+++.+.+
T Consensus 306 ---~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---------------- 365 (393)
T PRK15011 306 ---AILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAE---------------- 365 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 677888999888888777778888899988 469999999999999999999999999853
Q ss_pred cCCCCchhHHHHHhhHHHHHHHHHHHcCCC
Q 009362 200 HQADIAWRLILMLGSIPAAFTYYWRMTMPE 229 (536)
Q Consensus 200 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 229 (536)
..||+..|++.+++.++.++..++.||
T Consensus 366 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 366 ---IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 347999999888888777777666665
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=125.04 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=141.1
Q ss_pred hhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH-HHHHHHHHHHHHHHH
Q 009362 31 TDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR-VYGLALMLMVLSSLA 109 (536)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~ 109 (536)
.............|.+.++.. +.++.+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVL-------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333344444455555544432 889999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
....++. +.+.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+.
T Consensus 259 ~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~------- 325 (352)
T cd06174 259 LALAPSL------ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL------- 325 (352)
T ss_pred HHHhccH------HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 9888875 888999999999999999999999999999999999999999999999999999999983
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHc
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMT 226 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 226 (536)
+..+|+..+.+.+++.++..+..++
T Consensus 326 ------------~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 326 ------------DTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred ------------cccCcchHHHHHHHHHHHHHHHhee
Confidence 4568999999988888876665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=123.04 Aligned_cols=177 Identities=12% Similarity=0.031 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
...+.+.++.|......+...-.+|.+-++ +|.+.. .++.....+.++..++.++...+.||+.||+
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~------------~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~ 79 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEG------------AAGQLITAYALGVALGAPLLALLTGRLERRR 79 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 457778888888888999999999999988 998887 5667888899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
+++....+..++.++..+.++ +..+.+.=+..+.....++++..+++.++.|+++|++++++..+...++..
T Consensus 80 lLl~~l~lFi~~n~l~alAp~--------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v 151 (394)
T COG2814 80 LLLGLLALFIVSNLLSALAPS--------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV 151 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH
Confidence 999999999999999988877 667777777777777778899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeec
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTR 488 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (536)
+|.++..++ .+.+||+.+|++.+.+++++.+..+..+|
T Consensus 152 ~GvPLGt~i------g~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 152 LGVPLGTFL------GQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HhccHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999 55789999999999999999999998888
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-11 Score=109.48 Aligned_cols=182 Identities=16% Similarity=0.098 Sum_probs=118.7
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++.++.-+.+-.++...+.+. +|..-.+.+++ |.+..|++.+....+...++.+++.|.++||+|||+
T Consensus 33 ~~Fqr~yl~vY~La~~aDWLQ----GpY~Y~LY~~y--------g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~ 100 (354)
T PF05631_consen 33 RRFQRKYLLVYLLAMAADWLQ----GPYLYALYESY--------GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK 100 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cchhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 344555555545555554443 34444455677 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhh-ccC----CcccchhHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMS-EFA----NKMTRGAFIAAVFSMQGF 169 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~-e~~----~~~~rg~~~~~~~~~~~~ 169 (536)
.-++-+++.+++++.. ..+++ +.++++|++.|++....+.+--+++. |.- |++..+..++... -+
T Consensus 101 ~cl~~cily~~scl~k-~~~~~------~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t---f~ 170 (354)
T PF05631_consen 101 ACLLFCILYSLSCLTK-HSSNY------PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT---FF 170 (354)
T ss_pred HHHHHHHHHHHHHHHH-hcccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH---HH
Confidence 9999999999988754 45666 99999999999999988887766554 432 2222222222222 13
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCc
Q 009362 170 GILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESA 231 (536)
Q Consensus 170 G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp 231 (536)
+..+..+.++.+.+..-+ ....|-..+|....++.++..+.+ ..-+|..
T Consensus 171 ~n~~vAI~aGv~a~~l~~-------------~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 171 GNGVVAIGAGVVANVLAD-------------WFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HhHHHHHHHhHHHHHHHH-------------HhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 333333334444333221 112244778888777766654443 3445643
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-13 Score=132.25 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=124.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.+..+.|++.++..++..++.+++|++.||+|||+.+.++.++.+++.++.+++++. +.+++.+++.|++.+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~------~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGP------LEVSILKLLHAFEVPF 331 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999988888888876 7888899999999888
Q ss_pred cchhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
..+....++.|.+|++.|+...+. ++.+..+|.++++.+.+++. +..||+..|.+.++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-------------------~~~G~~~~f~~~~~~~ 392 (420)
T PRK09528 332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-------------------DSIGFQGTYLILGGIV 392 (420)
T ss_pred HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-------------------HhhCchHHHHHHHHHH
Confidence 888888999999999999887655 66778899999999999995 3457999999877666
Q ss_pred HHH-HHHHHcCCCCc
Q 009362 218 AFT-YYWRMTMPESA 231 (536)
Q Consensus 218 ~~~-~~~~~~~~esp 231 (536)
++. ++....+++.+
T Consensus 393 ~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 393 LLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHHHhcCCc
Confidence 554 34444444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=125.61 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh-chh
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI-GRV 363 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr 363 (536)
+.++.++...+...+.+|++..++|.|+.+.+|+++. .+............++.+++|+++||+ |||
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~------------~a~~i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDN------------HAYELFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 4566667777777889999999999999887888776 344556666677788888999999999 999
Q ss_pred HHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc--ccchhhhHhHHHHHH
Q 009362 364 AIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR--FRSTCHGISGAFGKV 441 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~ 441 (536)
+.+.++.++..++.+++..... .... ..+.......+.....+...++.+|.+|++ .|.++.++.....++
T Consensus 77 r~iliG~il~~lg~lll~~~~~------~~~~-~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nl 149 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASEI------HPSF-LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNV 149 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc------chhH-HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHH
Confidence 9999999998888766543221 0111 111111122222233355667889999975 699999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 442 GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 442 g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
|+.++|.+.+++.+ ..||+..|.+.++..+++.+..+
T Consensus 150 G~~iap~l~g~L~~------~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 150 GSIIAPIACGYAQE------EYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHHHHHh------hhChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999943 56899999887766655555444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=127.04 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=126.1
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
...+.+.+++ +.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++.+++.++..+.++.
T Consensus 226 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 293 (377)
T TIGR00890 226 GLYKPYGQSL--------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML---- 293 (377)
T ss_pred HHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc----
Confidence 3445556677 8899999999999999999999999999999999999999999998888877776643
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccccccc
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQH 200 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (536)
....+++..++.|++.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 294 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------------------ 355 (377)
T TIGR00890 294 NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL------------------ 355 (377)
T ss_pred hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 11345567788899988888888899999999999999999999999999999999999984
Q ss_pred CCCCchhHHHHHhhHHHHHH
Q 009362 201 QADIAWRLILMLGSIPAAFT 220 (536)
Q Consensus 201 ~~~~~w~~~f~~~~~~~~~~ 220 (536)
+..||++.|.+.+++.++.
T Consensus 356 -~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 356 -TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred -hhhchhhHHHHHHHHHHHh
Confidence 4557999998877766654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=125.09 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
.+.+.+..+......+......|.+.++ +|+++.+ .+.......++..++.++.|.+.||+|||+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~ 88 (394)
T PRK10213 22 VFSVAFCVACLIIVEFLPVSLLTPMAQD-LGISEGV------------AGQSVTVTAFVAMFASLFITQTIQATDRRYVV 88 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH-cCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 3444444444444555555567777776 8888773 34566667777888899999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+.+++.++.....+ .+.+.+.-+..++......+...+++.|.+|+++|+.+.++.....++|..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig 160 (394)
T PRK10213 89 ILFAVLLTLSCLLVSFANS--------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIA 160 (394)
T ss_pred HHHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777665433 34444444444555444557778888999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
|.+.+.+. +.++|+..|++.+.+++++.++.....||.
T Consensus 161 ~~l~~~l~------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 161 APLGSFLG------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHH------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999994 456899999988877776665554345553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=126.85 Aligned_cols=174 Identities=12% Similarity=-0.009 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh--cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hc
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQY--IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR-IG 361 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g 361 (536)
+.++.+.+..++....+|+...++|.|+++. +|++.. .++.......++..++.+++|+++|| +|
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~------------~ag~~~~~~~~~~~~~~~~~G~laDr~~G 77 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQE------------QAFIIFGAYSALVYLLTSVGWWFGDRVWG 77 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH------------HHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Confidence 4566777777888899999999999999886 677766 45567777778888999999999999 89
Q ss_pred hhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc---cchhhhHhHHH
Q 009362 362 RVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF---RSTCHGISGAF 438 (536)
Q Consensus 362 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~ 438 (536)
||+++.++.++.+++.+++..... ...+.+...+.+.+.....+...++.+|.+|++. |+++.++....
T Consensus 78 ~~~~l~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~ 149 (475)
T TIGR00924 78 TKKTMVLGGIVLMLGHFMLAMSIY--------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMS 149 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc--------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHH
Confidence 999999999999998887776443 2223333333444444455777788889998654 88899999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 439 GKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 439 ~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.++|.+++|.+.+++.+ +.||+..|.+.++.++++.+...
T Consensus 150 ~niG~~ig~~l~g~l~~------~~g~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 150 INIGSFISPLLAGVIAE------NYGYHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHHHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999953 56889999888766665544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=129.24 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=125.8
Q ss_pred HhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhh
Q 009362 302 YSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIG 381 (536)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 381 (536)
+......|.+.++ +|.++.+ .+.......++..++.++.|+++||+|||+.+..+.++.+++..++.
T Consensus 11 ~~~~~~~~~~~~~-~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 11 ANLSFAAPMLQED-LGLSAAQ------------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred HhhhHhHHHHHHh-hCCChhh------------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 3344445554444 8888773 34677777888899999999999999999999999888888877776
Q ss_pred cccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccccc
Q 009362 382 VPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVN 461 (536)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 461 (536)
+... ++.+.+..++.+++.....+....+..|.+|+++|++++++.+....+|..+++.+.+.+.+
T Consensus 78 ~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 143 (399)
T TIGR00893 78 FAGA--------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI------ 143 (399)
T ss_pred HHcC--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH------
Confidence 6544 34444454555555555567888899999999999999999999999999999999998843
Q ss_pred ccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 462 ATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 462 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
..+|+..|++.+++.++..++.++..||+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 144 HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 5578999998888887777766656666543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=126.38 Aligned_cols=176 Identities=11% Similarity=0.091 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHh
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 369 (536)
+....+.............|.+.++ +|.++. ..+.......++..++.++.|++.||+|||+.+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~------------~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 76 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAAD-LSTPAS------------IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLG 76 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence 3333343444445555566766666 888766 444667777888889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..+..++.+....... .+...+..++.+++.....+...++..|.+|+++|+++.|+.+....+|..++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 148 (385)
T TIGR00710 77 LFIFALSSLGLALSNN--------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL 148 (385)
T ss_pred HHHHHHHHHHHHHHcc--------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777765543 33344444444444444456777888999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 450 FLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 450 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+.+.+ ..+|+.++++.+++.++..+..++..||+++
T Consensus 149 ~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 149 GGYILV------WLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHH------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 998843 5588999998888887777766656666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=124.94 Aligned_cols=177 Identities=9% Similarity=0.047 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
++.+.+..+......+......|.+.++ +|.++.+ .+.......++..++.+..|.+.||+|||+++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 77 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQS-FHMQTAQ------------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLL 77 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhH-cCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3333333333333334444456776666 8888773 34555666667777888899999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+.+++.+...+..+ .+.+.+..+..+.......+...++..|.+|+++|++++|+......+|..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig 149 (390)
T PRK03545 78 IGLFVLFIASHVLSALAWN--------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLG 149 (390)
T ss_pred HHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHH
Confidence 9999988888777766544 33333333444444444456677888999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
|.+.+.+. +..||+.+|++.++++++..+..+...|+.
T Consensus 150 ~~l~~~l~------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 150 LPLGRVIG------QYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred hhHHHHHH------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999884 456899999999988877766665455553
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=125.91 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=127.2
Q ss_pred hhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhccccc
Q 009362 40 PPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQ 119 (536)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (536)
....|.+.++. |.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.
T Consensus 240 ~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 308 (406)
T PRK11551 240 LNWLPSLLVGQ--------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF--- 308 (406)
T ss_pred HHHHHHHHHhC--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH---
Confidence 33456677777 9999999999999999999999999999999999999988777777776666666664
Q ss_pred chhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccc
Q 009362 120 CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199 (536)
Q Consensus 120 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (536)
+.+.+.-++.|++.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+.
T Consensus 309 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~--------------- 370 (406)
T PRK11551 309 ---AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL--------------- 370 (406)
T ss_pred ---HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc---------------
Confidence 66777888899988888888999999999999999999999999999999999999998532
Q ss_pred cCCCCchhHHHHHhhHHHHHHHHHHHcC
Q 009362 200 HQADIAWRLILMLGSIPAAFTYYWRMTM 227 (536)
Q Consensus 200 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 227 (536)
..+|...+++.+...++..+..+++
T Consensus 371 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 371 ---GRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 2357777776666655554444444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-12 Score=123.77 Aligned_cols=181 Identities=18% Similarity=0.137 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+.+..+.+.++......+......|.+.++ +|.++.+ .+.......++..++.++.|++.||+|||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~ 78 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVD------------AASLISAALISRWFGALMFGLWGDRYGRRL 78 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhh------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 445556666666666667777777777655 8888774 346667777888999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
++..+.++.+++.++..+... +..+.+..++.+.+.....+...+++.|.+|+++|+++.++.+....+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~ 150 (405)
T TIGR00891 79 PMVTSIVLFSAGTLACGFAPG--------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV 150 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH
Confidence 999998888888777665443 334444445555555555577778889999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+++.+.+.+.+..+ .+|+..|++.++..++..+... ..||++
T Consensus 151 ~~~~l~~~l~~~~~----~~w~~~f~~~~~~~~~~~~~~~-~~~~~~ 192 (405)
T TIGR00891 151 VAAQVYSLVVPVWG----DGWRALFFISILPIIFALWLRK-NIPEAE 192 (405)
T ss_pred HHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHHHHH-hCCCCh
Confidence 99999998854321 2488888776555555444333 556643
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=124.64 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhh
Q 009362 64 VVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLS 143 (536)
Q Consensus 64 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 143 (536)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++. +.+++.+++.|++.+...+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~G~~~~~~~~~~ 323 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP------WMALIGAALTGFGFSLVFPAL 323 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHhHHHHHHHH
Confidence 45667788889999999999999999999999999988888888887777765 777888999999999888888
Q ss_pred hHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH
Q 009362 144 ATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW 223 (536)
Q Consensus 144 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 223 (536)
...+.|..|+++|+++.++++....+|..+++.+.+.+. +..||++.|++.++..++.++.
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-------------------~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA-------------------SWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHcCHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999988884 3457999999887777776555
Q ss_pred HHcCCC
Q 009362 224 RMTMPE 229 (536)
Q Consensus 224 ~~~~~e 229 (536)
..++++
T Consensus 385 ~~~~~~ 390 (399)
T PRK05122 385 TWLLYR 390 (399)
T ss_pred HHHhcc
Confidence 554544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-12 Score=121.51 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHH
Q 009362 294 WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFM 373 (536)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 373 (536)
.+.............|.++.+.+|.++.+. +.......++..++.++.|+++||+|||+.+..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~ 72 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQI------------GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCH------------HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhh
Confidence 344444455555666644555588887743 35666777888899999999999999999999999998
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhh
Q 009362 374 GVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l 453 (536)
+++.++..+... .+ .+.+..++.+.+.....+....+..|.+|+++|++++++.+....+|..++|.+.+.+
T Consensus 73 ~~~~~~~~~~~~-------~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 144 (352)
T PF07690_consen 73 ALGSLLLAFASN-------FW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL 144 (352)
T ss_dssp HHHHHHHHHHCC-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhhhh-------HH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh
Confidence 888444443222 23 5555555566665556688889999999999999999999999999999999999999
Q ss_pred hcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 454 SHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 454 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
. +..+|+.+|++.+++.++..++...+.++++.
T Consensus 145 ~------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 145 I------SYFGWRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp C------CHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred h------hccccccccccccchhhhhhhhHhhhhhhccc
Confidence 4 45678999999999999887764445554433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-10 Score=105.13 Aligned_cols=340 Identities=9% Similarity=0.051 Sum_probs=204.0
Q ss_pred CCChhhhH-HHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNAVVS-PMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++. ..+-+..++-|++.+
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv------~~mq~~q~~yg~~~a 109 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV------LAMQLMQFFYGLATA 109 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH------HHHHHHHHHHHHHHH
Confidence 88888774 55566666778888999999999999999999999999999999999986 999999999999987
Q ss_pred CcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
. ..+-.+|+-...|+++--++.+...++.-+|..++.++|-.+... +..+++..+.+.....
T Consensus 110 ~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-----------------~~~sy~~L~~isl~~~ 171 (412)
T PF01770_consen 110 A-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-----------------GGVSYFQLNYISLASV 171 (412)
T ss_pred H-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------cCCCHHHHHHHHHHHH
Confidence 4 677789999999999889999999999999999999999887642 4456788888877666
Q ss_pred HHHHHHHHcCCCCcchhhhhhhcHHHHH-HhHHHHhcccccccc-ccCCCCC-CCCC----hhhhhHHHhh-hhhhhHHH
Q 009362 218 AFTYYWRMTMPESARYTALVEQNVMQAA-KDMEKVLDVSISQIA-EEYPLPP-SPPQ----YPLISKRFLR-RHGRDLFA 289 (536)
Q Consensus 218 ~~~~~~~~~~~esp~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-~~~~----~~~~~~~~~~-~~~~~~~~ 289 (536)
.+.++..+++|..++...-+++..++.. ++.+.....+.++.. +..+.++ .+.. ...+.+...+ -..+.++.
T Consensus 172 ~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~ 251 (412)
T PF01770_consen 172 SLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLL 251 (412)
T ss_pred HHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHH
Confidence 6677777788887653222222111110 000000000000000 0000000 1111 1111111111 11234555
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH--HH
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI--QA 367 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~--~~ 367 (536)
..+-|.+...+++-...|.....++ ..-+..... ..+..-....+.+.++.+..|++-.++.+..- +.
T Consensus 252 WSlWWa~atcgy~qv~nYvQ~LW~~-v~~~~~~~v---------YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~ 321 (412)
T PF01770_consen 252 WSLWWAFATCGYYQVINYVQSLWDT-VPPSDNESV---------YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALG 321 (412)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh-cCCCCCCcc---------cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHH
Confidence 5555666667777777777777666 311111111 12233344444555667778888666655333 33
Q ss_pred HhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHH
Q 009362 368 LGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGK 440 (536)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 440 (536)
...++.+.+++++..... .|...+...++........ ++...-++.....+.-|...|+.+++.-
T Consensus 322 ~~S~l~a~~L~lm~~t~~-------Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~Al 386 (412)
T PF01770_consen 322 VFSLLQAGLLFLMSFTGN-------IWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFVAL 386 (412)
T ss_pred HHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHHHH
Confidence 344444555555544433 3334444444444444333 4444444444455666777776665543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=125.09 Aligned_cols=168 Identities=12% Similarity=-0.018 Sum_probs=126.2
Q ss_pred HHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHH
Q 009362 298 DIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIY 377 (536)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 377 (536)
...........|.+.++ +|.+.. ..+.......++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 74 (379)
T TIGR00881 8 YLVRKNFALAMPYLVEE-IGLSKT------------DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN 74 (379)
T ss_pred HHhHHhhhhhhHHHHHH-hCCCHh------------HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHH
Confidence 34445555566665555 888877 34466777788888999999999999999999999999888888
Q ss_pred HHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHH-HHHhhhcc
Q 009362 378 LAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTV-AFLWASHD 456 (536)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~-~~~~l~~~ 456 (536)
+++..... .+.+.+..++.+++.....+...++..|.+|+++|+++.++.+....+|..++|. +.+.+.
T Consensus 75 ~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 144 (379)
T TIGR00881 75 LFFGFSTS--------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-- 144 (379)
T ss_pred HHHHHhhh--------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH--
Confidence 77776544 3444444555555555556888889999999999999999999999999999994 555552
Q ss_pred cccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 457 DNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 457 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+..+|+..|++.+++.++..++.+++.+|+++
T Consensus 145 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 145 ----ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred ----hcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 34578888988888777776666656666543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=123.26 Aligned_cols=176 Identities=11% Similarity=0.065 Sum_probs=129.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hc
Q 009362 283 HGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR-IG 361 (536)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g 361 (536)
+++.++.++...+...+.+|+...+++.|+++.+|++..+ +............+..+++|+++|| +|
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------------a~~i~~~~~~~~~~~~~~~G~laDr~~G 79 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------------AFITFGAFAALVYGLISIGGYVGDHLLG 79 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence 4456777777788888999999999999998878887662 2233333444444555689999999 99
Q ss_pred hhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc--ccchhhhHhHHHH
Q 009362 362 RVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR--FRSTCHGISGAFG 439 (536)
Q Consensus 362 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~ 439 (536)
||+++..+.++..++.+.+.+... ....+.+.....+.+.....|...+++.|.+|++ .|+.+.++.....
T Consensus 80 ~r~~~~~g~~~~~~g~~~~~~~~~-------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ 152 (489)
T PRK10207 80 TKRTIVLGAIVLAIGYFMTGMSLL-------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI 152 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence 999999999999998887776543 1122223333344555555677788999999876 4578899999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHh
Q 009362 440 KVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 440 ~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 483 (536)
++|..++|.+.|++.+ ..||+..|++.++..+++.+..
T Consensus 153 nig~~~g~~l~g~l~~------~~gw~~~F~i~~i~~~~~~~~~ 190 (489)
T PRK10207 153 NIGSLISLSLAPVIAD------KFGYSVTYNLCGAGLIIALLVY 190 (489)
T ss_pred HHHHHHHHHHHHHHHH------hhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999954 5689999988655444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=127.03 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=112.8
Q ss_pred hhhhHhhhh-hhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhccc
Q 009362 39 IPPIMKLLG-RIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTT 117 (536)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 117 (536)
....+|.+. +++ |.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++.....+.
T Consensus 294 ~~~~lp~~l~~~~--------g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~- 364 (496)
T PRK03893 294 IQALLPTYLKTDL--------GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA- 364 (496)
T ss_pred HHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc-
Confidence 344566655 477 9999999999999999999999999999999999999988877766665544333221
Q ss_pred ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc
Q 009362 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK 197 (536)
Q Consensus 118 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~ 197 (536)
+.+.+.+..++.+.......+..++++.|.+|+++|++.+++......+|..++|.+++.+.
T Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~--------------- 426 (496)
T PRK03893 365 ---NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA--------------- 426 (496)
T ss_pred ---HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh---------------
Confidence 12444455555554444456777889999999999999999999999999999999999983
Q ss_pred cccCCCCchhHHHHHhhH
Q 009362 198 RQHQADIAWRLILMLGSI 215 (536)
Q Consensus 198 ~~~~~~~~w~~~f~~~~~ 215 (536)
+..||+..+.+.+.
T Consensus 427 ----~~~g~~~~~~~~~~ 440 (496)
T PRK03893 427 ----QRLDLGTALASLSF 440 (496)
T ss_pred ----ccCChHHHHHHHHH
Confidence 55678888765443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=123.71 Aligned_cols=182 Identities=14% Similarity=0.003 Sum_probs=122.2
Q ss_pred HHHHHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALM 101 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 101 (536)
+.+++..++............|. +.+++ |.+..+.++..+...++..++.+++|+++||+|||+.+.....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~--------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~ 332 (467)
T PRK09556 261 WLLCFANIFLYIVRIGIDNWSPVYAFQEL--------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA 332 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 33444444444433334455664 45667 9999999999999999999999999999999999988766554
Q ss_pred HHHHHHHHhh--hhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHH-HHHHHHHHH
Q 009362 102 LMVLSSLACG--FSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGF-GILASSTVT 178 (536)
Q Consensus 102 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~-G~~i~~~~~ 178 (536)
+..++..+.. ...+. ..+.+.+++.|++...........+.|.+|++.||.+.|+.+....+ |..++|.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~ 406 (467)
T PRK09556 333 LALIIFTLGVYQHATSE------YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGL 406 (467)
T ss_pred HHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhH
Confidence 4444332222 22332 56667888888754443333346777999999999999999888886 779999999
Q ss_pred HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH
Q 009362 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM 225 (536)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 225 (536)
+.+.+...+.. +.......+|+..|++..+..++..+..+
T Consensus 407 G~i~~~~~~g~-------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 407 GMIADPTKNGT-------PIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhccccccc-------ccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99864100000 00000145799999887666666544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=126.02 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=124.6
Q ss_pred HhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc--chhHHHHH--HHHHHHH
Q 009362 30 FTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI--GRRRVYGL--ALMLMVL 105 (536)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~~ 105 (536)
+............+|.+.+++ +.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.++
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l 322 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDK--------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL 322 (455)
T ss_pred HHHHHHccchHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 333333333344556666777 99999999999999999999999999999973 44443333 3344445
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009362 106 SSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIF 185 (536)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 185 (536)
+.++....+++ +.+++.+++.|++.+...+...+++.|.+|++++++.+++.+....+|.++||.+++.+.+..
T Consensus 323 ~~ll~~~~~~~------~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 323 THLLCALAGDY------TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHHHhchH------HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 55555666665 788889999999999999999999999999999999999999999999999999999884322
Q ss_pred hcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH
Q 009362 186 EATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY 222 (536)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 222 (536)
.+|++.|++.++..++..+
T Consensus 397 ------------------g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 397 ------------------KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred ------------------CCcchHHHHhhHHHHHHHH
Confidence 2599999987776655433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=126.88 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+..+.+..+.............|.+.++ +|.++.+ .+.......++.+++.++.|++.||+|||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 70 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQ------------VQWVITSYMLANAISIPLTGWLAKRFGTRRLF 70 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhh------------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH
Confidence 3344455555555556666777887777 8887764 33566777788889999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+..++.++...... ...+++..++.+++.....+...+++.|.+|++.|+++.++......+|..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 142 (485)
T TIGR00711 71 LISTFAFTLGSLLCGVAPN--------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALG 142 (485)
T ss_pred HHHHHHHHHHHHHHhCcCC--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999998888877766544 34444555555555555667888899999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
|.+.+++. +..+|++.|++.+.++++..++.++..|+.+
T Consensus 143 ~~~~~~l~------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 143 PTLGGWII------ENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hccHhHhc------cCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 99999984 4568999999888887777766665666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=124.08 Aligned_cols=179 Identities=14% Similarity=0.057 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.+..+++..+....-......-.|.+.++ +|.+..+ .......+.++.....+..|+++||+|||+.
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~------------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~ 73 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNE------------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRL 73 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45555666666666666677778888777 7877663 3345555666777778899999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccc-cccccchhhhHhHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELF-PARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~ 444 (536)
+..+..+..++.++.+...+ .+.+++.-++.+++.....+.......+.+ |+++|++++|+......+|..
T Consensus 74 l~~~~~~~~~~~~~~~~a~~--------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~ 145 (495)
T PRK14995 74 LMLGGTLFGLASLAAAFSPT--------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA 145 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888776654 344444444444444444455555555554 678999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
++|.+.+.+. +..+|++.|++...++++..++.++++|+.+
T Consensus 146 ~gp~lgg~l~------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 146 FGPLVGGILL------EHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHhh------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999994 4668999999988888887777766667644
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=124.52 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.++.+....++.....+....+.|.+.++ +|.++.+ .+.......++..++.++.|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 77 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLH------------MHMVIVSYVLTVAVMLPASGWLADRVGVRNI 77 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46666777777777777888899999887 8887663 3344566667777888999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+..+.+++.+....... ...+.+..++.+++.....+...++..|.+|++.|+++.|+.+....+|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (471)
T PRK10504 78 FFTAIVLFTLGSLFCALSGT--------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLL 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99888877777766554332 3333444444455544455777788899999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
+|.+.+.+.+ ..+|++.|.+...++.++.+......|+.
T Consensus 150 g~~~~g~l~~------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 150 GPALGGLLVE------YASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred hhHHHHHHHh------hccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999954 45889999988877777766666454543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=122.33 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=119.4
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.+. .++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++. +.+++..++.|++.+.
T Consensus 247 ~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~ 318 (392)
T PRK12382 247 GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA------WVALAGAALTGAGCSL 318 (392)
T ss_pred CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH------HHHHHHHHHHHHHHHh
Confidence 5543 4566777888889999999999999999999999999988888887777765 7778899999999998
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAA 218 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 218 (536)
..+...+.+.|.+|+++||++.++.+....+|..++|.+.+.+.+ ..||+..|.+.+++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------------------~~g~~~~~~~~~~~~~ 379 (392)
T PRK12382 319 IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------------------SFGYPSVFLAGAISAV 379 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999853 4579999999887777
Q ss_pred HHHHHHH
Q 009362 219 FTYYWRM 225 (536)
Q Consensus 219 ~~~~~~~ 225 (536)
+..+...
T Consensus 380 ~~~~~~~ 386 (392)
T PRK12382 380 LGIIVTI 386 (392)
T ss_pred HHHHHHH
Confidence 6554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=122.10 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+......+++.....+....+.|.+.++ +|++..+ .+.......++..++.++.|+++||+|||+++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~gls~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~ 104 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDN-LNLTKSD------------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGS 104 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 3333334444444455566666777666 8887663 23445666777888999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+.++.+++.++..+... ...+.+..++.+++.... .....+++|.+|+++|++++|+.+...++|..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~s--------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~ 175 (476)
T PLN00028 105 AFLLMLTAPAVFCMSLVSS--------ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVT 175 (476)
T ss_pred HHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHH
Confidence 9888888887776665444 223333333333333333 2334567899999999999999998888888888
Q ss_pred HHHHHhhhccc---ccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 447 TVAFLWASHDD---NKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 447 ~~~~~~l~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
+.+.+.+.... +..+..||+.+|++.++++++..++.+++
T Consensus 176 ~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 176 QLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77776553211 00123589999999998888776666634
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=122.05 Aligned_cols=137 Identities=20% Similarity=0.343 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhh
Q 009362 64 VVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLS 143 (536)
Q Consensus 64 ~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 143 (536)
..+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++. +.+++.+++.|++.+...+..
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~ 332 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTP------LQLGILRFLLGAADGALLPAV 332 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHhhhHhhHHHH
Confidence 35667778888899999999999999999999999988888877777777665 788889999999999999999
Q ss_pred hHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH
Q 009362 144 ATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW 223 (536)
Q Consensus 144 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 223 (536)
.+++.+..|+++||+.+++......+|..+||.+++.+. +..||+..|++.++..++..+.
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-------------------~~~g~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-------------------ANYGFRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH-------------------hhcchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984 4567999999988777776554
Q ss_pred HH
Q 009362 224 RM 225 (536)
Q Consensus 224 ~~ 225 (536)
.+
T Consensus 394 ~~ 395 (408)
T PRK09874 394 SW 395 (408)
T ss_pred HH
Confidence 43
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=120.89 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHh
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 369 (536)
.....++...+.+....+.+.++.+..|+++. ..+.......+...+..++.|+++||+|||+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~------------~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~ 82 (400)
T PRK11646 15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAV------------MVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTG 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH------------HHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHH
Confidence 33455555566677777888888776888876 444566666677777788999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..+..+..+.+..... ++.+.+..+..++......+...++..|.+|+++|+++.|+.....++|..++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 83 MLMRAAGFATMAIAHE--------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887765433 33334444444444444456667888999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 450 FLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 450 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
.+++. ..+|+..|++.+.+++++.++..++.||
T Consensus 155 ~g~l~-------~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 155 GSWLL-------QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99985 3478889988887777665554445554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=119.72 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
|.++.+.+++.+.......++.++.|++.||+|||+++.++.++..+..++..+.++. +.+++.+++.|++.+.
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSL------WALLMLQLLNAIFIGI 304 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 8999999999888888888899999999999999999988877766665555555654 7778889999999888
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAA 218 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 218 (536)
..+....++.|..|+ +|++++++.+....+|..++|.+++.+. +..||+..|++.++..+
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~-------------------~~~g~~~~~~~~~~~~~ 364 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA-------------------ERWSYHAVYWFAIVMLI 364 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhccchhHHHHHHHHHH
Confidence 888888999998875 5679999999999999999999999985 34479999999888877
Q ss_pred HHHHHHHcCCC
Q 009362 219 FTYYWRMTMPE 229 (536)
Q Consensus 219 ~~~~~~~~~~e 229 (536)
+..+...+++|
T Consensus 365 ~~~~~~~~~~~ 375 (375)
T TIGR00899 365 VALFCLLLIKD 375 (375)
T ss_pred HHHHHHheecC
Confidence 76666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=119.78 Aligned_cols=175 Identities=9% Similarity=0.012 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhH
Q 009362 291 ATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGF 370 (536)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 370 (536)
....+.............|.+.++ +|.+.. ..........++..++.++.|+++||+|||+.+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~------------~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~ 75 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAAD-LNASEA------------QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA 75 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH
Confidence 333334444445555667777766 777765 3445666677788888999999999999999999998
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHH
Q 009362 371 FFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 450 (536)
.+..++.+.+..... .....+..++.+.......+...++..|.+|+++|+++.++.+....++..++|.+.
T Consensus 76 ~~~~i~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 76 ALFIIASLLCSLAET--------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred HHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777665443 222333333333433334456778889999999999999999999999999999998
Q ss_pred HhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 451 LWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 451 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+.+.+ ..+|+..|++.++++++..++.+...||+++
T Consensus 148 ~~l~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 148 HLIML------KFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHh------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88743 4588889999888887777766656676543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=120.12 Aligned_cols=179 Identities=11% Similarity=0.031 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.++...+..+......+......|.+.++ +|.+..+ .+.......++.+++.++.|++.||+|||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPA------------AGHMISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHH------------HhHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 45566666666666667777788887766 8888763 3466777788889999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+..+.+++.++.....+ ++.+.+..++.+++.....+....+..|.+|+++|+.++++......++..+
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 142 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLSSS--------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLL 142 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHH
Confidence 99999999888887766554 3334444444444433334555667789999989999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+|.+.+.+. +..+|+.+|++.+.+.++..+..++..||.+
T Consensus 143 g~~l~~~l~------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 143 GIPLGTYLS------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hccHHHHHh------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999884 3568999999988887777666555667643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=120.51 Aligned_cols=169 Identities=12% Similarity=-0.015 Sum_probs=121.5
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHH
Q 009362 294 WLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFM 373 (536)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 373 (536)
.+.............|.+..+ .+.++. ..+.......++.+++.++.|+++||+|||+.+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~------------~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~ 74 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLA-GTGSAS------------VLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIR 74 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhccHH------------HHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHH
Confidence 333444444555566667666 555544 4456777778888889999999999999999999988887
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhh
Q 009362 374 GVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWA 453 (536)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l 453 (536)
.++.+++..... ... ...+.+.+..++.+.+.....+...++..|.+|+++|+++.|+.+....+|.+++|.+.+.+
T Consensus 75 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 75 AVLVAVLPFVAL--LGG-LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHH--cCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777666655442 000 12334444444444554455577788999999999999999999999999999999999998
Q ss_pred hcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 454 SHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 454 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+ ..+|+..|++.++..+++.++.+
T Consensus 152 ~~------~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 152 YA------TLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 43 55888888887777666655544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=117.92 Aligned_cols=153 Identities=9% Similarity=-0.057 Sum_probs=129.6
Q ss_pred hcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhc
Q 009362 36 LFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSIC 115 (536)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~ 115 (536)
...+....|.+.++. |.++.++|.+.++..++..++.++.+++.||+|+|+.+.++.++.++..++.+++++
T Consensus 221 ~~~~~~~~~~~l~~~--------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~ 292 (382)
T TIGR00902 221 HAAYYGFSAIYWQAA--------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA 292 (382)
T ss_pred HHHHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 333444556666777 999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 116 TTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVF-SMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 116 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
. +.+++.+++.|++.|...+....++.+. |+++|++..++++ ...++|.++++.++|.+.+
T Consensus 293 ~------~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~----------- 354 (382)
T TIGR00902 293 F------PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP----------- 354 (382)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 6 8889999999999999999999999998 9899999999976 5788999999999999954
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHHHHH
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFTYYW 223 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~ 223 (536)
..|+ ..|++.++.+++.+++
T Consensus 355 --------~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 355 --------TLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred --------hccH-HHHHHHHHHHHHHHHH
Confidence 3455 4566666665555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-11 Score=119.46 Aligned_cols=164 Identities=10% Similarity=-0.032 Sum_probs=110.7
Q ss_pred hhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcc
Q 009362 304 SNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVP 383 (536)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 383 (536)
.....|. +.+. |.++. ..+.......++..++.++.|+++||+|||+++..+.++.+++.+.+.+.
T Consensus 48 ~~~~~p~-l~~~-g~s~~------------~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~ 113 (452)
T PRK11273 48 FALAMPY-LVEQ-GFSRG------------DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 113 (452)
T ss_pred HHHhhHH-HHHc-CCCHH------------HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhh
Confidence 4445564 4453 77766 44466777888889999999999999999999999998888887776654
Q ss_pred cccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH-HHHHHHhhhcccccccc
Q 009362 384 YSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII-GTVAFLWASHDDNKVNA 462 (536)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~ 462 (536)
... ......+.+..++.+++.....+.....+.|.+|+++|++++|+.+....+|+.+ +|.+...+.. .
T Consensus 114 ~~~----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------~ 183 (452)
T PRK11273 114 PWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------F 183 (452)
T ss_pred hcc----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------h
Confidence 320 0122333333333333333334555566788999999999999999998888654 5544333311 2
Q ss_pred cccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 463 TGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
.+|+..|++.++++++..++.++++||+.
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 27888999988877776666665666643
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=119.83 Aligned_cols=183 Identities=11% Similarity=-0.022 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.++...+.+..............|. +++ .|.++.+ .+.......++..++.++.|+++||+|||+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~ 93 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMPY-LVE-QGFSKGE------------LGFALSAISIAYGFSKFIMGSVSDRSNPRVF 93 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhHH-HHH-cCCCHhH------------hHHHHHHHHHHHHHhhhccchhhhccCCcee
Confidence 3444444444443333434445554 445 4777763 3466777778888999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+.++.+++.+++...... ......+.+..+..+++.....+.....+.|.+|+++|++++|+.+....+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~ 169 (438)
T TIGR00712 94 LPAGLILSAAVMLLMGFVPWA----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI 169 (438)
T ss_pred hHHHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH
Confidence 998888888877766543220 0122333333333334333334556677789999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
++.+.+...+ +..+|+.+|++.++++++..++.+++.||++
T Consensus 170 ~~~l~~~~~~-----~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 170 PPLLVLLGMA-----WFNDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 9888776543 1347899999988888877666665666643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=117.72 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=122.0
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
..+|.+.++. +.+..+.|++.+...++..+++++.|++.||+|+|+++..+..+..++.+... ..
T Consensus 221 ~~lp~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~----- 285 (381)
T PRK03633 221 GLMPLYLNHQ--------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ----- 285 (381)
T ss_pred HHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-----
Confidence 3466666777 89999999999999999999999999999999999999888888777665443 22
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccccccc
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQH 200 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (536)
.......++.|++.+...|...+++.|..|+++++...+......++|.++||.+++++.+
T Consensus 286 --~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------------- 346 (381)
T PRK03633 286 --AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------------- 346 (381)
T ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 3344577888888777889999999999998888888888888999999999999999953
Q ss_pred CCCCchhHHHHHhhHHHHHHHHHHHc
Q 009362 201 QADIAWRLILMLGSIPAAFTYYWRMT 226 (536)
Q Consensus 201 ~~~~~w~~~f~~~~~~~~~~~~~~~~ 226 (536)
..+|++.|.+.+...++..+..++
T Consensus 347 --~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 347 --NYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred --HhCccHHHHHHHHHHHHHHHHHHh
Confidence 446899998877777665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.7e-11 Score=115.30 Aligned_cols=174 Identities=10% Similarity=0.076 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+..+...+.++.............|.+.++ +|++.. ..+.......++..++.++.|++.||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~------------~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~ 73 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVS------------SMSNTFTFLNAGILISIFLNAWLMEIIPLKR 73 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445556666666666667777778887766 788766 3445666677788899999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
.+..+..+.+++.++.....+ ...+.+..++.+.+.....+....++.|.+|++.|+.+.+..+....+++.
T Consensus 74 ~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 145 (394)
T PRK03699 74 QLIFGFALMILAVAGLMFSHS--------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM 145 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcch--------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 999988888887777665433 333333333334333333466677889999999999999999888889999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++|.+.+.+.+ +..+|+..|.+.+++.++..++.+
T Consensus 146 ~~~~~~~~l~~-----~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 146 IFPIIAAYLLA-----RSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888753 235899999988877766655444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=119.15 Aligned_cols=173 Identities=9% Similarity=0.041 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hchh
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR-IGRV 363 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr 363 (536)
+.++..+...++....+|+...+++.|+++.+|++..+ +...............+++|+++|| +|||
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------------SITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 45677777778888899999999999998878887663 2222222222333334578999999 5999
Q ss_pred HHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc--cchhhhHhHHHHHH
Q 009362 364 AIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF--RSTCHGISGAFGKV 441 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~ 441 (536)
+.+..+.++..++..++.+... ....+.+.....+.+.....+...++..|.+|++. +..+.++.+...++
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~~-------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSGH-------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 9999999998888777765432 12222232233334444444666678899998643 45678888999999
Q ss_pred HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 009362 442 GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAI 482 (536)
Q Consensus 442 g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 482 (536)
|..++|.+.+++.+ ..||+..|.+.++..+++.+.
T Consensus 162 G~~~gp~i~g~l~~------~~g~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 162 GSFFSMLATPWLAA------KYGWSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHHHHHHHHHHHHH------hhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999954 568999999877655555433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-11 Score=115.21 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=124.1
Q ss_pred cchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcc
Q 009362 37 FCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICT 116 (536)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 116 (536)
.......|.+.+++ |.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+..
T Consensus 222 ~~~~~~lp~~l~~~--------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 222 ASLIAWLPAFYIEI--------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHc--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 33444566666677 9999999999999999999999999999999999999998888877776655433321
Q ss_pred cccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Q 009362 117 TKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN-KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDV 195 (536)
Q Consensus 117 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~ 195 (536)
...+ .-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..+
T Consensus 294 -----~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--------- 357 (393)
T PRK09705 294 -----LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--------- 357 (393)
T ss_pred -----HHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 0222 2346788888888887777777775 5789999999999999999999999999976543
Q ss_pred cccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcc
Q 009362 196 NKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESAR 232 (536)
Q Consensus 196 ~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~ 232 (536)
+|...|.+.++..++..+ ...+.||++.
T Consensus 358 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 358 ---------NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 378888887666665433 3456677654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=117.70 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=118.7
Q ss_pred HHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHh
Q 009362 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAI 380 (536)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 380 (536)
........|.+.++ +|.++. ..........++..++.++.|.++||+|||+.+..+..+..++.+..
T Consensus 29 ~~~~~~~~~~~~~~-~~~s~~------------~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 29 NDMIQPGMLAVVED-FNAGAE------------WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI 95 (406)
T ss_pred hhhHhcchHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33344445555555 777765 33455667778888889999999999999999999888888877766
Q ss_pred hcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccc
Q 009362 381 GVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV 460 (536)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~ 460 (536)
..... .+.+.+..++.+.......+...+...|.+|++.|.++.++......++..++|.+.+.+.+
T Consensus 96 ~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----- 162 (406)
T PRK15402 96 LLAQS--------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH----- 162 (406)
T ss_pred HHHcc--------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 55443 23333333333333333345667778899999999999999988888899999999998843
Q ss_pred cccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 461 NATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 461 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
..+|+.+|++.+++++++.+..++..||++
T Consensus 163 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 163 -VLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred -ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 458899999988888877776655666654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=115.36 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=119.3
Q ss_pred HHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHH
Q 009362 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYL 378 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 378 (536)
.+.....+++--++++ .|..+.-. +...+....+.++.-++.+++++|+|+-+++..+..+..+-++
T Consensus 385 ~g~~lv~tFLfWHled-~~~~~~Lf------------Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~ 451 (618)
T KOG3762|consen 385 AGVGLVFTFLFWHLED-LGGIKTLF------------GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFL 451 (618)
T ss_pred HHHHHHHHHHHHHHhh-cCCcceee------------eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHH
Confidence 3334444555556777 66554422 2566777788999999999999999999999999999988888
Q ss_pred HhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHH-HHHHHHHHHHHHHhhhccc
Q 009362 379 AIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAF-GKVGAIIGTVAFLWASHDD 457 (536)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~~~l~~~~ 457 (536)
.+....+ +|.+..+-++-+......+....+|++...|++.++++.|+.... ..+|-.+|.+++|.+.+
T Consensus 452 ~~S~L~n--------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-- 521 (618)
T KOG3762|consen 452 YYSYLQN--------PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-- 521 (618)
T ss_pred HHHHhcC--------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe--
Confidence 8877666 455555555555555555577778999999999999999998654 56788899999999854
Q ss_pred ccccccccchhhHHHHHHHHHHHHHhh
Q 009362 458 NKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 458 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+|-+..|.++++.|++..++..
T Consensus 522 ----~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 522 ----RFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred ----eehhHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888777665554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=116.37 Aligned_cols=183 Identities=13% Similarity=0.209 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
++...+..+......+....+.|.++++.+|+++.+ .+.......++.+++.++.|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 70 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT 70 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 445556666666777788888887666668988874 44677777888899999999999999999999
Q ss_pred HHhHHHHHHHHHHhhccc-ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPY-SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
..+.++..++.+++.... . .+.+.+..++.+..... .+....++.|.+|+++|+++.++.....++|..+
T Consensus 71 ~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 71 TLSLLLLAIPCLWAGLAVQS--------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV 141 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH
Confidence 999999988887776654 3 33333333334443333 3455678899999999999999999888888888
Q ss_pred HHHHHHhhhccc----ccccccccchhh-HHHHHHHHHHHHHhheeeccc
Q 009362 446 GTVAFLWASHDD----NKVNATGVTIAL-LILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 446 ~~~~~~~l~~~~----~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 490 (536)
++.+.+.+.... +..+..+|++.| +..+++..+..++.+.+.+|.
T Consensus 142 ~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 142 AQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 887776654321 111234788888 444555444444444344443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=103.71 Aligned_cols=329 Identities=11% Similarity=0.074 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhh
Q 009362 69 LALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMS 148 (536)
Q Consensus 69 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 148 (536)
.++-+....+++++.+.+.|+.|.|..++++........+...+..+ +.+++.-.+.|+|.+..+..--.|++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~-------y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS-------YYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch-------HHHHHHHHHhhhhHHheecccceehh
Confidence 78888889999999999999999999999999999988888777665 78899999999999999999999999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchh------------HHHHHhhH-
Q 009362 149 EFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWR------------LILMLGSI- 215 (536)
Q Consensus 149 e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~------------~~f~~~~~- 215 (536)
|..+++++.+..++.......+.++|..+-..+........ ....+-+ ..++..+.
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 197 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSA-----------IITDGTRRLVFEVLFIDFEIKVLFGVLL 197 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccccc-----------ccccchhhhhcchhhhhHHHHHHHHHHH
Confidence 99999999999999888888888888666555432221100 0011111 11111111
Q ss_pred -HHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHH
Q 009362 216 -PAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSW 294 (536)
Q Consensus 216 -~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (536)
+.++..+...+.|.+.. ...++..++...+ .++........+.++.+....
T Consensus 198 ~~~~l~~i~~~~~p~~~~-~~~~~~~~~~~~~---------------------------~l~~~~~l~~~~~ml~L~~~f 249 (461)
T KOG3098|consen 198 AISVLSIINFDFLPSKDV-VNCKSSSETSFSE---------------------------LLKLTFKLLKTPKMLLLFPFF 249 (461)
T ss_pred HHHHHHhhheeecCccch-hhhhhhccccHHH---------------------------HHHHHHHHhcCHhHHHHHHHH
Confidence 11112222223332111 0000000000000 111111111112222222222
Q ss_pred HHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh---hchhHHHHHhHH
Q 009362 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR---IGRVAIQALGFF 371 (536)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~ 371 (536)
+..+..........|.- +..+... ..+.....++.....+++.+.+....+.+.+| +||++.+.++..
T Consensus 250 ~~tG~~~Sf~~~iypt~----i~ft~~~-----~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~ 320 (461)
T KOG3098|consen 250 FYTGLETSFWISIYPTC----ISFTRKL-----GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGII 320 (461)
T ss_pred HHHHHHHHHHHhccchh----hhhhhhc-----cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHH
Confidence 22211111111112221 2222110 11112355566777777888888888888776 577888777777
Q ss_pred HHHHHHHHhhcccccccC----------CCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHH
Q 009362 372 FMGVIYLAIGVPYSYKWS----------KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV 441 (536)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 441 (536)
+..+..++.-.......+ .........+..+..++.....+...+.++..++| +.|..+.++...-..+
T Consensus 321 ~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~ 399 (461)
T KOG3098|consen 321 IHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSV 399 (461)
T ss_pred HHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 766665555443331111 01124455566667777777888888889999995 6689999998888888
Q ss_pred HHHHHHHHHHhh
Q 009362 442 GAIIGTVAFLWA 453 (536)
Q Consensus 442 g~~~~~~~~~~l 453 (536)
++.++-+..+..
T Consensus 400 ~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 400 ASCVAFFFSPYL 411 (461)
T ss_pred HHHHHhhhhhhh
Confidence 887776666544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=120.38 Aligned_cols=159 Identities=13% Similarity=-0.007 Sum_probs=130.2
Q ss_pred hhhHhhhhhh-hccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccc
Q 009362 40 PPIMKLLGRI-YYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTK 118 (536)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (536)
....|.+.++ + |.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.
T Consensus 243 ~~~~p~~~~~~~--------g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 312 (417)
T PRK10489 243 RVLYPALADEVW--------QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW-- 312 (417)
T ss_pred HHhhHHHHHhcc--------CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH--
Confidence 3455666555 6 8999999999999999999999999999999888888888888888888777777764
Q ss_pred cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccccc
Q 009362 119 QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKR 198 (536)
Q Consensus 119 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (536)
+.+.++.++.|++.+...+...+++.|..|++.||+++++......+|..+|+.+.+.+.+
T Consensus 313 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~--------------- 373 (417)
T PRK10489 313 ----ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA--------------- 373 (417)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH---------------
Confidence 6778888999998887777888999999999999999999999999999999999999954
Q ss_pred ccCCCCchhHHHHHhhHHHHH-HHHHHHcCCCCc
Q 009362 199 QHQADIAWRLILMLGSIPAAF-TYYWRMTMPESA 231 (536)
Q Consensus 199 ~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~esp 231 (536)
..|++..+++.+...++ ..+....++|.+
T Consensus 374 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 374 ----MMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred ----HhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 34577777765554444 455555666654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=117.99 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+....+.++......+......|.+.++ +|.++. ..........++..++.++.|+++||+|||+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~------------~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l 86 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-LGLTDM------------EGAFLATAAFIGRPFGGALFGLLADKFGRKPLM 86 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 4444455555455555555555655555 888766 344666677788889999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+.++.+++.++..+... .+.+.+.-++.+++.....+....+..|.+|+++|+++.++......+|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 158 (426)
T PRK12307 87 MWSIVAYSVGTGLSGLASG--------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158 (426)
T ss_pred HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence 9999999888877766544 34444444455555455557777888999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHH
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGG 474 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 474 (536)
+.+.+.+. +..+|+..|++...
T Consensus 159 ~~l~~~l~------~~~~w~~~f~i~~~ 180 (426)
T PRK12307 159 AYFMPSFA------EAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHc------ccCCHHHHHHHHHH
Confidence 99988884 35688888887443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-11 Score=117.20 Aligned_cols=180 Identities=9% Similarity=-0.067 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+..+......++............|.+.++ +|.++. ..+.......++..++.++.|+++||+|||+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~------------~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~ 74 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIADMARD-LNVREG------------AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP 74 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHhhhhHHHhcCChH
Confidence 344444444444444444455556777666 888776 4446667778888899999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
.+..+..+..++.+....... ...+.+..++.+++.....+....+..|.++.+.++.+.+..+....++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (394)
T PRK11652 75 VILVGMSIFILGTLVALFAHS--------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877776655433 233333333333333333355556678888888899999999999999999
Q ss_pred HHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 445 IGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
++|.+.+.+.+ ..+|+.+|++.+++.++..++..++.||++
T Consensus 147 ~g~~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 147 LAPLIGGLLTT------LFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 99999998843 458899999887777665555444566653
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=117.37 Aligned_cols=170 Identities=11% Similarity=-0.029 Sum_probs=121.7
Q ss_pred hhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccc
Q 009362 39 IPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTK 118 (536)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (536)
.....|.+.++. |.+....++......+...++.++.|+++||+|||++++.+.++.+++.++.+.....+.
T Consensus 290 ~~~~~p~i~~~~--------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 290 VLYYAPEIFKTL--------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred HHHHHHHHHHHc--------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 344557777787 888877788888888899999999999999999999999999999988877765432101
Q ss_pred cchhhHHHHHHHHHhhhccC-cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc
Q 009362 119 QCVLGSLGFFRFLLGVGIGG-DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK 197 (536)
Q Consensus 119 ~~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~ 197 (536)
. + .....+-++.+++.+. ..+....++.|.+|+++|++++++......+|..+++.+.+.+....
T Consensus 362 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~------------ 427 (479)
T PRK10077 362 P-G-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS------------ 427 (479)
T ss_pred c-c-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------------
Confidence 0 1 1233334444444443 34677899999999999999999999999999999887766552100
Q ss_pred cccCCCCchhHHHHHhhHHHHHHHHH-HHcCCCCc
Q 009362 198 RQHQADIAWRLILMLGSIPAAFTYYW-RMTMPESA 231 (536)
Q Consensus 198 ~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~esp 231 (536)
...+..+|++.|++.++.+++..+. .++.||+.
T Consensus 428 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 428 -WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred -chhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 0024567888888877666665444 34567764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=119.95 Aligned_cols=184 Identities=11% Similarity=-0.009 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHH
Q 009362 21 AIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLAL 100 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (536)
.+....+..+.............|.+.+++ |.+..+.++......++..++.++.|+++||+|||+.+.++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 356 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENA--------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 333344444444444445556677787888 888888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhhhccccc-----chhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGFSICTTKQ-----CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
++.+++.++..+....... .....+....++.+.......+....++.|.+|+++|++++++......+|.++++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~ 436 (481)
T TIGR00879 357 AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVG 436 (481)
T ss_pred HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766521100000 01122333333333333334566778889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-HcCCCCc
Q 009362 176 TVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MTMPESA 231 (536)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~esp 231 (536)
.+.+.+. +..+|++.|++.++++++..+.. ++.||++
T Consensus 437 ~~~~~~~-------------------~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 437 FLFPTML-------------------ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHH-------------------HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 9998884 33579999988777766654444 4566654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=117.80 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..........++.+++.++.+++.||+|||+.+..+.++..++.++....... ........+++.-++.+++..+..+
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHHHHHHHHHhhhhH
Confidence 34466777778899999999999999999999999888888877766654320 0001133445555555566666668
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc-----------------ccccccchhhHHHHHHH
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK-----------------VNATGVTIALLILGGVC 476 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~-----------------~~~~g~~~~~~~~~~~~ 476 (536)
....+..|.+|++.|+++.++.+....+|..+++.+...+...... ....+|+..+.+.++.+
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~ 214 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA 214 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHH
Confidence 8889999999999999999999999999999998887655321100 01247999987766666
Q ss_pred HHHHHHhheeeccccc
Q 009362 477 FMGFAITYFFTRETMG 492 (536)
Q Consensus 477 ~~~~~~~~~~~~~~~~ 492 (536)
++..++.+ ++||+.+
T Consensus 215 ~i~~~~~~-~lpESpr 229 (502)
T TIGR00887 215 LLALYFRL-TIPETPR 229 (502)
T ss_pred HHHHHHHH-hCCCCHH
Confidence 65555544 7898754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=114.34 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=116.1
Q ss_pred HHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHH
Q 009362 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYL 378 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 378 (536)
..+..+....|.+.++ +|.++.+ .+.......++..++.+..|++.||+|||+++.........+..
T Consensus 5 ~~~~~~~~~lp~i~~~-~~~s~~~------------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 71 (368)
T TIGR00903 5 AIWVTFSPVLSLVAED-IDVSKEE------------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG 71 (368)
T ss_pred HHHHHHHhhHHHHHHH-hCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 3445556667777766 8887763 33556667778888899999999999999876655444433322
Q ss_pred HhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 379 AIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
......+ +..+.+.-++.+.+... ........+|.+|+++|++++++.+....+|..+++.+.+++.
T Consensus 72 ~~~~~~~--------~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---- 138 (368)
T TIGR00903 72 RLLDPFN--------YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---- 138 (368)
T ss_pred HHHHhcc--------HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1111112 33444444444444333 2344455689999999999999999999999999999999884
Q ss_pred cccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 459 KVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 459 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+..||+..|++.+++.++..++.++++||.++
T Consensus 139 --~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 139 --TAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred --HccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35699999999888888887777767787543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-11 Score=115.56 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..........++..++.++.|+++||+|||+++..+..+.+++.++...... ...+.+.-++.+.+.....+
T Consensus 52 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~~l~~~r~l~Gi~~~~~~~ 123 (413)
T PRK15403 52 LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------MTQFLIARFIQGTSICFIAT 123 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHH
Confidence 3445566667788888999999999999999999998888888777766544 33333333333333333334
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
..+.+..|.+|++.+++++++.+....++..++|.+.+.+.+ ..||+..|++.+++.+++.+..++..||+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 556778899999999999999999999999999999988843 4589999999998888877766556777643
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=114.46 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=111.7
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
|.+......+..+..+...++.++.|+++||+|||+++..+.++..++.+........ ......+++..++.|++.+.
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA--QSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHH
Confidence 8888776666667777788899999999999999999988877666554433322100 00124445566777888888
Q ss_pred cchhhhHhhhccCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVF-SMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
..+...+++.|.+|++.|+...++.. .+..+|..++|.+.+++.+.. ..+|+..+...++..
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-----------------~~~~~~~~~~~~~~~ 422 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-----------------GGSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------------CCCchHHHHHHHHHH
Confidence 88888999999999999998888854 445588899999999986432 225888888877777
Q ss_pred HHHHHHHHcCCCC
Q 009362 218 AFTYYWRMTMPES 230 (536)
Q Consensus 218 ~~~~~~~~~~~es 230 (536)
++..+..+.++|+
T Consensus 423 ~i~~v~~~~~~~~ 435 (438)
T PRK09952 423 LISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHcccc
Confidence 7766666666664
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=113.75 Aligned_cols=164 Identities=11% Similarity=0.129 Sum_probs=119.3
Q ss_pred hhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH-HHHHHHHHHHHHhhh
Q 009362 34 YDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG-LALMLMVLSSLACGF 112 (536)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~ 112 (536)
..........|.+.+++ |.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+
T Consensus 236 ~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAEL--------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHHHHHHHHHHHHHc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33334445667777777 999999999999999999999999999999999988764 333444444333332
Q ss_pred hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009362 113 SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRD 192 (536)
Q Consensus 113 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~ 192 (536)
.+... ..+.+.+++..++.|++.+...+ ....+.|..| ++|+++.++.+....+|..++|.+++.+.
T Consensus 308 ~~~~~-~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~---------- 374 (402)
T TIGR00897 308 IPQHF-GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI---------- 374 (402)
T ss_pred HHHcc-CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 21100 00126667788889988876544 4556677654 68999999999999999999999999985
Q ss_pred CcccccccCCCCchhHHHHHhhHHHHHHHHHHHcC
Q 009362 193 NDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTM 227 (536)
Q Consensus 193 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~ 227 (536)
+..||+..+++.++..++..+..+|+
T Consensus 375 ---------~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 375 ---------GFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred ---------hhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999998887777665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=116.31 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=123.1
Q ss_pred hhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhc
Q 009362 303 SSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGV 382 (536)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 382 (536)
......|.+.++ +|.++. ..+.......++..++.++.|+++||+|||+.+..+.++.+++...+..
T Consensus 9 ~~~p~~~~~~~~-~~~s~~------------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 9 MYLPALPVIAAD-FGVSAG------------SVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL 75 (377)
T ss_pred HHhccHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 344556777766 777766 4446667777888899999999999999999999999888888877765
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccc
Q 009362 383 PYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA 462 (536)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 462 (536)
... .+.+.+..+..+++.....+...++..|.+|++.|+++.++.+....+|..++|.+.+.+.+ .
T Consensus 76 ~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~ 141 (377)
T PRK11102 76 AQT--------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV------W 141 (377)
T ss_pred Hcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 543 23333334444444444456677888999999999999999999999999999999998843 4
Q ss_pred cccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 463 TGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
.+|+..|++.+.++++..++..++.||++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 142 FSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 57888999888888777766665666653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=112.98 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=133.0
Q ss_pred hhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh--HHHHHHHHHHHHHHHHhhh----
Q 009362 39 IPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR--RVYGLALMLMVLSSLACGF---- 112 (536)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~---- 112 (536)
+........+++ |++..+...+.-+..+..++|++++|++.||+|.| ++++++++++.+..+...+
T Consensus 301 ~~~~~i~a~~~l--------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~ 372 (477)
T PF11700_consen 301 ISFAGIYATEVL--------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWP 372 (477)
T ss_pred HHHHHHHHHHhc--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555678 99999999999999999999999999999999999 8998888888665555444
Q ss_pred ----hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009362 113 ----SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEAT 188 (536)
Q Consensus 113 ----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~ 188 (536)
..+. +.+.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+.+++
T Consensus 373 ~~~g~~~~------~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~- 445 (477)
T PF11700_consen 373 SFFGLKSP------WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS- 445 (477)
T ss_pred cccCcccH------HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 3333 78999999999999999999999999999999999999999999999999999999999877653
Q ss_pred cccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCC
Q 009362 189 TTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPE 229 (536)
Q Consensus 189 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~e 229 (536)
-|+.+....++.++.+++++++++
T Consensus 446 -----------------~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 446 -----------------QRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHhhccc
Confidence 677777766666666666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=100.22 Aligned_cols=184 Identities=13% Similarity=0.095 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHH
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYG 97 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~ 97 (536)
||..+..........+ ..+.++..-|.+++.+ |+|.+|...+..+-.+|..+| ++.|.+.|++|+|.++.
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l--------~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~ 70 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRL--------GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLL 70 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHh--------CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHH
Confidence 4666666666665555 5567778889999999 999999999999999999874 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccc-chhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHH
Q 009362 98 LALMLMVLSSLACGFSICTTKQ-CVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASST 176 (536)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~ 176 (536)
+|.+...+|..+...+-+-.-. .++|.+.+..++.|.+.+...........+.+| ++||.+.|+.-...+++..+-..
T Consensus 71 iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 71 IGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence 9999999999887765443221 345888888889888887777777777778887 68999999999999999887776
Q ss_pred HHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCc
Q 009362 177 VTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESA 231 (536)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp 231 (536)
+...+. ++..-...+++...+.++.++..+++++.|
T Consensus 150 i~~~~f-------------------~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 150 IYSAFF-------------------GDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHc-------------------CCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 665552 223345555556666666666656665444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.5e-11 Score=115.23 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=108.7
Q ss_pred HHhhhhhhcchhhhHhhhh-hhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLG-RIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSS 107 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 107 (536)
.+.............|.+. +++ +.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTL--------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3333333344445556654 566 8999999999999999999999999999999999998876555544433
Q ss_pred H--Hhhhh--hcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 009362 108 L--ACGFS--ICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 108 ~--~~~~~--~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~ 182 (536)
+ +..+. ++ .+.+++..++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.
T Consensus 300 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~ 373 (394)
T TIGR00883 300 VPLLMALLDSGS------FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV 373 (394)
T ss_pred HHHHHHHhcCCc------hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence 2 22222 23 26677788999999888999999999999999999999997 45667789999999999996
Q ss_pred Hh
Q 009362 183 KI 184 (536)
Q Consensus 183 ~~ 184 (536)
+.
T Consensus 374 ~~ 375 (394)
T TIGR00883 374 AM 375 (394)
T ss_pred HH
Confidence 54
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-11 Score=115.96 Aligned_cols=185 Identities=16% Similarity=0.068 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHh
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 369 (536)
+++.......--|......+.. +++++.++...| +......+...+.++++|++.||++|++++.+|
T Consensus 38 l~~vnlmny~Dr~~iagv~~~v-~~~fni~~s~~G------------ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVLKEV-QTYFNISDSELG------------LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred HHHHHHHHHhhhhhhhhhhHHH-HHhcCCCchhcc------------chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 3333333333334333333332 334677777544 566677778888899999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..+-.++.+..++... ++.+.+.-.+.+.+.....|+..++++|.+|.++|++++++.+....+|+.+|-+.
T Consensus 105 ~~iW~~Av~~~~fs~~--------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNH--------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 9999999888887754 67777777777888888889999999999999999999999999999999999888
Q ss_pred HHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccchhhccc
Q 009362 450 FLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLEENEK 500 (536)
Q Consensus 450 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (536)
...+.+..+ .|+++|...+++.+++.++..++.+|..++..++.+.
T Consensus 177 gs~va~~~~-----~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 177 GSVVASLTF-----WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred eeeeccCcc-----ceEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 887755332 3999999999999999999988888877654444333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=117.41 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..+.......++.+++.+++|++.||+|||+.+..+.++.+++.++...... .....+++..++.+++.....+
T Consensus 77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~ 150 (465)
T TIGR00894 77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLAQGSVSP 150 (465)
T ss_pred HhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHhcccchh
Confidence 4456677777888999999999999999999999988887777666543221 1133455555666677677778
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccc-cccchhhHHHHHHHHHHHHHhheeecc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNA-TGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
....+..|.+|+++|++++|+.+....+|.++++.+.+.+.+ . .+|+.+|++.+++.++..++.+.+.++
T Consensus 151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE------SWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999853 4 389999999888887776666544444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=111.24 Aligned_cols=159 Identities=10% Similarity=0.089 Sum_probs=113.2
Q ss_pred HHHhhhhhhhHH--hhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHH
Q 009362 300 VFYSSNLFQSKI--YHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIY 377 (536)
Q Consensus 300 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 377 (536)
.+.+...+.|.+ +.+.+|.++. ..+.......++..++.++.|+++||+|||+.+..+..+..++.
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~------------~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 85 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSAS------------AVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence 334444455544 3344777766 44567777788888999999999999999999999888887777
Q ss_pred HHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccc
Q 009362 378 LAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDD 457 (536)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~ 457 (536)
++...... .+.+.+..++.+.+.....+...++..|.+|++.++...+..+....++..++|.+.+++.
T Consensus 86 ~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~--- 154 (401)
T PRK11043 86 LGMLWVES--------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL--- 154 (401)
T ss_pred HHHHHhcC--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66655433 2333333333333322223445567789999988899999998889999999999999984
Q ss_pred ccccccccchhhHHHHHHHHHHHHHhh
Q 009362 458 NKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 458 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+..+|+..|++.+.+.++..++.+
T Consensus 155 ---~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 155 ---NHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred ---hcCChHHHHHHHHHHHHHHHHHHH
Confidence 356889999988888777766655
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-10 Score=109.26 Aligned_cols=128 Identities=10% Similarity=-0.070 Sum_probs=110.3
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
...|.+.+|. |.+..+.|.+.+...++..+..++.|++.||+|+|+++..+.++.+++.++.+.+++.
T Consensus 226 ~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 293 (382)
T PRK11128 226 GFSAIYWQAA--------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTAL---- 293 (382)
T ss_pred HHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhH----
Confidence 3445555677 9999999999999999999999999999999999999999999999888888888775
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVF-SMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~i~~~~~~~l~~ 183 (536)
+.+++..++.|++.+...+....++.+. +++++++..+... ....+|..+||.++|.+.+
T Consensus 294 --~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 294 --PWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999998889999999887 5667788888876 6667888999999999953
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-10 Score=111.14 Aligned_cols=152 Identities=12% Similarity=-0.012 Sum_probs=103.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccc
Q 009362 338 QAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417 (536)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (536)
......++..++.++.|++.||+|||+.+..+..+.+++.++.++..............+.+.-++.+++..+..+...+
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 147 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 34555667779999999999999999999999999998888877655411000011223444445555555566688889
Q ss_pred cccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc--ccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK--VNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 418 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
++.|.+|+++|+...++.......|.++++.+...+...... ...+||+.+|++.++.+++...+ ....||+
T Consensus 148 ~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~-~~~~~e~ 221 (432)
T PRK10406 148 YMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWL-RRQLDET 221 (432)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 999999999999999988877777777777665544321110 12469999999877766655333 2244543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-10 Score=109.55 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
++.++..++...+.........|.+.++ +|.+.. ..+.......++.+++++..+++.||+|||+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-~~~s~~------------~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~ 71 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-FTLTAF------------QAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI 71 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 4445555555555555555667766554 888766 455777888889999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+.+++.+++..... ...++.+.+..+..+.+.....+....+..+..|++.+++..++.+....+|..++
T Consensus 72 ~~g~~l~~~g~~l~~~~~~-----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 72 LLGLFLYALGAFLFWPAAE-----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888776543321 01233334444444444444445556677788898999999999999999999999
Q ss_pred HHHHHhhhccccc--------------------ccccccchhhHHHHHHHHHHHHHh
Q 009362 447 TVAFLWASHDDNK--------------------VNATGVTIALLILGGVCFMGFAIT 483 (536)
Q Consensus 447 ~~~~~~l~~~~~~--------------------~~~~g~~~~~~~~~~~~~~~~~~~ 483 (536)
|.+.+.+...... .+..+|+.+|++.+++.++..++.
T Consensus 147 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 147 MVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887532100 022468889988888776655444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=94.08 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
.++.+++.++.+++.||+|||+.+..+.....++.+.+..... .+...+..+..+.......+....+..|.
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN--------ITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566777888999999999999999888887777766654433 23333333444444444456777888999
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
+|++.|+++.++.+....++..++|.+.+.+.+ ..+|+..+++.+.+.+++.+..++..||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ------FLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999854 4577888888888888777777655554
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=110.55 Aligned_cols=173 Identities=10% Similarity=-0.010 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
++.+....++............+....+ ++.++. ..........+...+..++.|++.||+|||+++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~------------~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl 71 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKE-LHYPDW------------SQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM 71 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHH------------HHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh
Confidence 3444455555444444444444555554 555544 344566677778888899999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+.+++.+.+..... . .+..++.+.+.....|...+++.|.+|+++|++++|+.+....++..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~--------~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~G 140 (393)
T PRK11195 72 FIANGIKLLGCLLMLFGIH--------P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLG 140 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888776665544322 1 2222334555555668888999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
|.+.|.+.+. .+...+.+.+.+.+++.+. .+.+||.+
T Consensus 141 p~lgG~l~~~-------~~~~~~~i~~~~~~~~~~~-~~~l~~~~ 177 (393)
T PRK11195 141 TVLGGALADP-------HAEAALAVCALIYLLAALF-NLFIPRLG 177 (393)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HhcCCCCc
Confidence 9999999652 2555665555544444333 33666643
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=108.09 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=118.2
Q ss_pred hHhhhhhhhccCCCCCCCCChhhhHHHHH-HHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHh---hhhhccc
Q 009362 42 IMKLLGRIYYSDGADRFQIPNAVVSPMLA-LALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLAC---GFSICTT 117 (536)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (536)
..|.+.+++ |.+..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++. +...+
T Consensus 245 ~~~~l~~~~--------G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~-- 314 (491)
T PRK11010 245 TTTFLIRGV--------GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK-- 314 (491)
T ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 345555667 999999999974 6678999999999999999999998877666655554333 22211
Q ss_pred ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc
Q 009362 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNK 197 (536)
Q Consensus 118 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~ 197 (536)
+.+.+.+.-++..++.|...+...++..+..+++.+++..++.+....+|..+++.+++.+.+
T Consensus 315 ---~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-------------- 377 (491)
T PRK11010 315 ---NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-------------- 377 (491)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 124445555665555555567778899999999999999999999999999988888888853
Q ss_pred cccCCCCchhHHHHHhhHHHHHHHHHHHcCCCC
Q 009362 198 RQHQADIAWRLILMLGSIPAAFTYYWRMTMPES 230 (536)
Q Consensus 198 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es 230 (536)
..||+..|.+.++++++.++...+++++
T Consensus 378 -----~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 378 -----AHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred -----HhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4479999999888888776666555544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=104.73 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+++......+...+.+...|.++||+|||.++.++.+..++.+++.+.... ...+++.=+..+.+.... .
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~--------F~afv~aR~l~Gi~kgnl-~ 139 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN--------FAAFVLARFLGGIFKGNL-S 139 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhccCch-H
Confidence 5667888888999999999999999999999999999999998888877665 333344355666666555 6
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccccccc-ccchhh--HHHHHHHHHHHHHhheeeccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNAT-GVTIAL--LILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 490 (536)
+..++++|++++++|+.+++.++....+|.++||.++|++..... .. .+..++ ++..++++.......+++|||
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~---~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSS---ISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHh---hhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 777999999999999999999999999999999999999976111 11 122222 222233333233334488998
Q ss_pred cccchh
Q 009362 491 MGRSLE 496 (536)
Q Consensus 491 ~~~~~~ 496 (536)
-..+.+
T Consensus 217 L~~rk~ 222 (451)
T KOG2615|consen 217 LPLRKR 222 (451)
T ss_pred ccchhh
Confidence 654433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-10 Score=110.96 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=131.6
Q ss_pred chhhhHhhhhh-hhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcc
Q 009362 38 CIPPIMKLLGR-IYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICT 116 (536)
Q Consensus 38 ~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~ 116 (536)
.+..++|.+.+ ++ |.+....|++.+++.+|..+|++..+++.+|+++++.+..+.++++++.+..+++++.
T Consensus 236 a~~aLlPl~a~~~l--------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~ 307 (524)
T PF05977_consen 236 AVWALLPLFARDVL--------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF 307 (524)
T ss_pred HHHHhhhHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH
Confidence 33456777665 45 8999999999999999999999999999999999999999999999999999999986
Q ss_pred cccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccc
Q 009362 117 TKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVN 196 (536)
Q Consensus 117 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~ 196 (536)
+..++.-++.|++.....+...+.+.+..|++.||++++++.+....+..+|.++.|.+.+.
T Consensus 308 ------~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~------------ 369 (524)
T PF05977_consen 308 ------WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH------------ 369 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 88888999999999988888999999999999999999999999999999999999999644
Q ss_pred ccccCCCCchhHHHHHhhHHHHHH
Q 009362 197 KRQHQADIAWRLILMLGSIPAAFT 220 (536)
Q Consensus 197 ~~~~~~~~~w~~~f~~~~~~~~~~ 220 (536)
.|-+..+.++++..++.
T Consensus 370 -------~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 370 -------FGVRTALLIAGAALLLS 386 (524)
T ss_pred -------hCHHHHHHHHHHHHHHH
Confidence 46788887766655444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=118.04 Aligned_cols=140 Identities=15% Similarity=0.216 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..+.......++.+++.++.|+++||+|||+++.++.++..++.++..+... .+.+.+..++.+++..+..+
T Consensus 128 ~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~r~l~G~~~~~~~~ 199 (505)
T TIGR00898 128 KVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN--------YTVFLVFRLLVGMGIGGIWV 199 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhhccchHH
Confidence 4556777788899999999999999999999999998888888777766544 44455555556666666678
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
...+++.|.+|++.|+.+.++......+|.++++.+...+. +|+..+++.++..++..+..+ ++||+.
T Consensus 200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~wr~~~~~~~i~~~~~~~~~~-~~~esp 267 (505)
T TIGR00898 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DWRWLQLAVSLPTFLFFLLSW-FVPESP 267 (505)
T ss_pred HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHH-hcCCCh
Confidence 88899999999999999999998888899999988876652 378888888888777766664 777754
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-10 Score=102.63 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+.++.............+......+.+- +.+|+++.| ......+..+.+.+.++.-|.+.||+|.|+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~-~~~~LS~~q------------~~ll~aiPil~GallRl~~g~l~drfGgR~ 80 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIK-SDFGLSEGQ------------KGLLVAIPILVGALLRLPYGFLTDRFGGRK 80 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCHHH------------HHHHHHHHHHHhHHHHHHHHhhhcccCchH
Confidence 3444444444444444444444444444 448888884 447778888888999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
....+.++..+-.+.+.+... ....+.+.++.++.+..+. .+.+...++++.+|++++|.++|+.. .+|+|..
T Consensus 81 ~~~~s~~l~~IP~~~~~~a~~-----~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a 153 (417)
T COG2223 81 WTILSMLLLLIPCLGLAFAVT-----YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA 153 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-----CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHH
Confidence 999999988888777777665 1122344444444444433 34777888999999999999999999 9999999
Q ss_pred HHHHHHHhhhcccccccccc---cchhhHHHHHHHHHHHHHhheeeccc
Q 009362 445 IGTVAFLWASHDDNKVNATG---VTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 445 ~~~~~~~~l~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
+..++.+.+.. ..+ |+.+..+.....++..+..++...+.
T Consensus 154 v~q~~~P~v~~------~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 154 VAQLVAPLVAV------AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred HHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999988854 345 88888888888888888877666543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-10 Score=108.80 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=115.7
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.+....|.+.++..+...++.++.|++.||+|||+.+.++.++.++...+...+++. +.+++.+++.|++.+.
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~------~~~~~~~~l~g~~~~~ 323 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA------LEVVILKMLHAFEVPF 323 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999988888877777775 7788899999998776
Q ss_pred cchhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
.......++.+..+++.++...+. .+....+|..+++.+++++.+ ..||+..|.+.++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~-------------------~~G~~~~f~~~~~~~ 384 (396)
T TIGR00882 324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD-------------------SIGFQGAYLVLGCIV 384 (396)
T ss_pred HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH-------------------hcccHHHHHHHHHHH
Confidence 666667778888888888777665 667889999999999999953 447999999977776
Q ss_pred HHHHH
Q 009362 218 AFTYY 222 (536)
Q Consensus 218 ~~~~~ 222 (536)
++..+
T Consensus 385 ~i~~~ 389 (396)
T TIGR00882 385 LLFTL 389 (396)
T ss_pred HHHHH
Confidence 66543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-10 Score=102.21 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=142.1
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHH
Q 009362 21 AIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLAL 100 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (536)
..++.+-..+.++.+. .++.....-..++ |++..+..++.....+..++|++++|+|.||+|.|+++.+++
T Consensus 255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~--------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l 325 (438)
T COG2270 255 VLFLIARFFYIDGVNT-ILAMGGVFGAADL--------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL 325 (438)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHHc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH
Confidence 4444445555555543 2333333444578 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMA 180 (536)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~ 180 (536)
++..+.++...+...- ..+.++-.+.|+..|..+...-+|..+..|+++-++.+|++......+..+||.+-+.
T Consensus 326 vi~~~~~~~~~~~~~~------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 326 VILSIAALYLIFLEGE------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHHHHcccc------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 9998888876666553 6777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCC
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPES 230 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~es 230 (536)
+.+.+++ -|.-+....++..+.++....+|+.
T Consensus 400 ~t~iTg~------------------~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 400 ITQITGS------------------SRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHhcc------------------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9877664 5666655555555555665666654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=103.78 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
|.++...+.++......+......+.+-+..+|++..| ......+..++..+.++..|++.||+|.|+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~ 101 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------------LFLLTALPSVSGALLRVPYSFMVPIFGGRR 101 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 34555555555555555555555555555348888764 335556666677778888899999999999
Q ss_pred HHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHH
Q 009362 365 IQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAI 444 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 444 (536)
++.++..+..+..+...+..+ . ..+++..+.+..++.++... ..+.....+++.+|+++||++.|+....+++|..
T Consensus 102 v~~~~~ll~~i~~~~~~~a~~--~-~~~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~ 177 (462)
T PRK15034 102 WTVFSTAILIIPCVWLGIAVQ--N-PNTPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVS 177 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--c-cCCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence 999999988888777765411 0 01124444444444444433 4467778889999999999999999877888877
Q ss_pred HHHHHHHhhh-----ccccc-------ccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 445 IGTVAFLWAS-----HDDNK-------VNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 445 ~~~~~~~~l~-----~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
+++++.+.+. +..+. .+..+++.+.++.+.+.++..++.+++.++
T Consensus 178 l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 178 VMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7666665433 11110 023457777778888887777777755544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=107.68 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=103.5
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcc
Q 009362 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDY 140 (536)
Q Consensus 61 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 140 (536)
+..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+.++ +.+.+++..++.|++.+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-----NLPLILVLIILAGFGQNFVT 329 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-----hHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999999999999888888777666532 13667778889999999999
Q ss_pred hhhhHhhhccCC-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009362 141 PLSATIMSEFAN-------KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFE 186 (536)
Q Consensus 141 ~~~~~~i~e~~~-------~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 186 (536)
+...++++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999875 4567999999999999999999999999987654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-09 Score=104.20 Aligned_cols=181 Identities=14% Similarity=0.033 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
.....+.++....-........|.+.++ ++.++.+.+. ...+........+...++.++.|++.||+|||+.+
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFAS------LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHH------HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 4445555566566666677778877776 7777654220 00111122223344457788999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+..++.+++++..............+++.-++.+++.....+....+.+|.+|+++|++++++.....++|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 99999998888888776541000000001123333344444444446666889999999999999999999888888888
Q ss_pred HHHHHhhhccccc--ccccccchhhHHHHH
Q 009362 447 TVAFLWASHDDNK--VNATGVTIALLILGG 474 (536)
Q Consensus 447 ~~~~~~l~~~~~~--~~~~g~~~~~~~~~~ 474 (536)
+.+.+.+...... .+.+||+.+|++...
T Consensus 170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 8777765321110 135689988886443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=98.83 Aligned_cols=187 Identities=16% Similarity=0.077 Sum_probs=132.3
Q ss_pred ehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHH
Q 009362 17 YHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVY 96 (536)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~ 96 (536)
.|+.....+.+......-+...+......+.++- |++..+.-+......+...+..+++..+.||+|||+.+
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a--------G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl 338 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA--------GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL 338 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 3444334333333333344455566667777777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccc-hh--hHHHHHHHHH--hhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 97 GLALMLMVLSSLACGFSICTTKQC-VL--GSLGFFRFLL--GVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~~~r~l~--G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
++++.+..+..+++.......... .+ +..+++.++. .++.| .-|+..-+.+|.+|++.|..++++.....-+..
T Consensus 339 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~ 417 (485)
T KOG0569|consen 339 LISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSN 417 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 999999999998877654332211 11 1223333333 33333 367888999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcc
Q 009362 172 LASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESAR 232 (536)
Q Consensus 172 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~ 232 (536)
.+-...-..+.+..+ = +.|++.++++++. +..+..+|||..
T Consensus 418 fiv~~~fp~l~~~~g-------------------~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 418 FIVGFAFPPLQNVIG-------------------P-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHHhc-------------------c-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 777777766644332 2 5666666666654 566678999853
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=104.19 Aligned_cols=154 Identities=15% Similarity=-0.014 Sum_probs=112.2
Q ss_pred hHhhhhhhhccCCCCCCCCChhhhHHHHHHHHH-HHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 42 IMKLLGRIYYSDGADRFQIPNAVVSPMLALALL-GTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
..+.+.+|. |.+++++|++.+...+ ...++.++.|++.||+|+|+.+.++..+.++..+......+.....
T Consensus 230 ~~~~~l~~~--------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 301 (390)
T TIGR02718 230 LSKLYLVDA--------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAP 301 (390)
T ss_pred HhhHHHHhc--------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 445555677 9999999999888764 6677889999999999999999887776644333222111100000
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccc
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK-MTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQ 199 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (536)
....+.....+.+++.|...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~--------------- 366 (390)
T TIGR02718 302 GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR--------------- 366 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 113445555666777777778888888888776 8899999999999999999999999999543
Q ss_pred cCCCCchhHHHHHhhHHHHHHHH
Q 009362 200 HQADIAWRLILMLGSIPAAFTYY 222 (536)
Q Consensus 200 ~~~~~~w~~~f~~~~~~~~~~~~ 222 (536)
.||+..|.+.+++.++..+
T Consensus 367 ----~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 367 ----FGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred ----HccHHHHHHHHHHHHHHHH
Confidence 4688999887776666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-09 Score=104.79 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=109.2
Q ss_pred HHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHH
Q 009362 297 VDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVI 376 (536)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 376 (536)
.....|++..+.+.+.++ +|++..+.+ .........+ ...+..|++.||+|+|+++.++.++..++
T Consensus 39 ~~g~~y~fsv~s~~L~~~-lgls~~~l~------------~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG 104 (591)
T PTZ00207 39 CTSFMYAFNLISGAMQAR-YNLTQRDLS------------TITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLG 104 (591)
T ss_pred HHHHHHHHHHHHHHHHHH-hCcCHHHHH------------HHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 345556777777876555 888876422 1112212222 34556899999999999999999999999
Q ss_pred HHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH-HHHHHHhhhc
Q 009362 377 YLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII-GTVAFLWASH 455 (536)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~~~l~~ 455 (536)
.++.++...... ..+.+.+.++.++.+.+.....+.....+.+.+| +.||.+.|+......+|+++ +++..+++.+
T Consensus 105 ~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 105 TLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877532100 1123444444444444444344555566788887 67999999999999999976 4444444421
Q ss_pred ccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 456 DDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 456 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
+++..|++.+++.++..++.+.++++.
T Consensus 182 --------~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 182 --------NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 456778888877777766666565544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-09 Score=103.08 Aligned_cols=192 Identities=14% Similarity=0.016 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----hhch
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID----RIGR 362 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr 362 (536)
++.+....+...+.+.....+.+.|+++ +|.++. ..........+..++..++.|+++| |+||
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~------------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR 72 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHA------------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR 72 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC
Confidence 4555666666667777777888888876 888765 5556777788888899999999999 5999
Q ss_pred hHHHHHh-HHHHHHHHHHhhccccccc------CCCc-hH---HHHHHHHHHHHHHhcCcccccccccccccccccc--c
Q 009362 363 VAIQALG-FFFMGVIYLAIGVPYSYKW------SKHT-NF---GFMFLYALTFFFANFGPNTTTFIVPAELFPARFR--S 429 (536)
Q Consensus 363 r~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~ 429 (536)
|+.++.+ .....++++++.+...... .... .+ ..++.+.+.....+. ..+...++++|..|+++| +
T Consensus 73 Rrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~-~~~p~rALiaDl~p~~~~~~~ 151 (477)
T TIGR01301 73 RRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM-LQGPCRAFLADLTGGDARRTR 151 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCchhHHHH
Confidence 9988764 5555556566554332100 0001 11 111112222222222 335557889999998765 5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhh--cccc-------cccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 430 TCHGISGAFGKVGAIIGTVAFLWAS--HDDN-------KVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 430 ~~~g~~~~~~~~g~~~~~~~~~~l~--~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+.++.+...++|+++++.+.+... +..+ ..-..+++..|++.+++.+++.++..+..+|...
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 7999999999999999999887641 1110 0011267789999999999999998888888653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=111.14 Aligned_cols=172 Identities=12% Similarity=0.047 Sum_probs=124.5
Q ss_pred hhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccc
Q 009362 305 NLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPY 384 (536)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 384 (536)
...++.+-+ .++++..+.| .......++.+++.++.+++.||.+||+.+.++.++.+++.++.++..
T Consensus 53 ~~~l~~iek-~F~lss~~~G------------~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 53 NSSLTTIER-RFKLSTSSSG------------LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred Hhhchhhhh-hhCCCCCcce------------eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 334444444 4888888655 566677778888888999999999999999999999999988887653
Q ss_pred cccc------------------------C-----------------C--CchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 385 SYKW------------------------S-----------------K--HTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 385 ~~~~------------------------~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
.... . . ...+..+++.-++.+++.....+...+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 1000 0 0 0123445556666777777777888999999
Q ss_pred cccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccc---------------ccc-ccchhhHHHHHHHHHHHHHhhe
Q 009362 422 LFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV---------------NAT-GVTIALLILGGVCFMGFAITYF 485 (536)
Q Consensus 422 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~---------------~~~-g~~~~~~~~~~~~~~~~~~~~~ 485 (536)
.+|++.|+...|+......+|..+|+.+.+++.+..... ... +|+..|++.+++.++..+..+
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~- 278 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF- 278 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999886532100 011 266778888877777665554
Q ss_pred eeccc
Q 009362 486 FTRET 490 (536)
Q Consensus 486 ~~~~~ 490 (536)
+.|++
T Consensus 279 ~~p~~ 283 (633)
T TIGR00805 279 FFPKA 283 (633)
T ss_pred hCccc
Confidence 55554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-09 Score=102.50 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh-----chhH-H
Q 009362 292 TSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI-----GRVA-I 365 (536)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~ 365 (536)
..++...........-+|.++++ .|++..+.| ........ .+..++.|+++||+ |||+ .
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig------------~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~ 70 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIG------------FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW 70 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHH------------HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence 33444555666667778999998 799887533 23333322 46778999999999 7765 6
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+.++.+++...+.+... ....+.+....++..+......+...+++.|..|+++|+++.++......+|..+
T Consensus 71 l~~~~~~~~l~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP-----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 77777777777776655432 1223333333333344455556778889999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecccc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
++.+.+.+.+. ..||+..|++.+++.++..+... +.||++
T Consensus 146 g~~l~~~l~~~-----~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~ 185 (402)
T PRK11902 146 SGGLALWLADR-----VLGWGNTYLLMAGLMLAGALTTL-WAPEPE 185 (402)
T ss_pred HhHHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 99998888531 24899999998887776655443 556553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-09 Score=99.72 Aligned_cols=159 Identities=9% Similarity=-0.019 Sum_probs=118.3
Q ss_pred hhhhHHhhhhcCCCCCC-ccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccc
Q 009362 306 LFQSKIYHQYIDGNGHD-QTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPY 384 (536)
Q Consensus 306 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 384 (536)
...|. +.+.+|+++.+ .| ........+..+..+.+|+++||+|.|+++..+.+..++..+++++..
T Consensus 47 ~a~p~-L~~elglT~~qv~G------------~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~ 113 (511)
T TIGR00806 47 FITPY-LLTVLNFTEETVTN------------EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT 113 (511)
T ss_pred HHHHH-HHHHcCCCHHHhcc------------hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 44459999886 44 566666777788888999999999999999999999999888888754
Q ss_pred ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc
Q 009362 385 SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG 464 (536)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 464 (536)
. ...+.+.-++.+.+..... ....++...+|+++|+++.|+.+....+|.++++++.+++. .. +...
T Consensus 114 S--------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~---gWr~ 180 (511)
T TIGR00806 114 S--------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL---GWIS 180 (511)
T ss_pred H--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc---Cchh
Confidence 4 4556666666666666665 77788899999999999999999999999999999999843 22 1223
Q ss_pred cchhhHHHHHHHHHHHHHhheeecccc
Q 009362 465 VTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+....++..+...+++++.+ ++|..+
T Consensus 181 y~~Ln~Isl~s~~~a~~~a~-~LP~~~ 206 (511)
T TIGR00806 181 YSTLNIISLVFMTFSVFLAL-FLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence 33444455555555666666 777444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=98.29 Aligned_cols=116 Identities=13% Similarity=0.150 Sum_probs=95.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
|+++.+.++..+.+..+..++.+..+++.||+|+|+++.++..+..++.++....++ .....+-++.|++.+.
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~-------~~~~~~~~l~g~~~s~ 246 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG-------YVAMWFVLALGLFNSI 246 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999998888888877766655443 2223455688999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
.+|...+...+..|+ +.+.+.++. .+..+|.+++|++.+.+.+
T Consensus 247 i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 247 MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 999999999998874 456667765 5567899999999888853
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=106.74 Aligned_cols=176 Identities=14% Similarity=0.206 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccc--hhHHHHH
Q 009362 21 AIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIG--RRRVYGL 98 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~ 98 (536)
.....+++..+..+........+|...++. +.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~--------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~ 370 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSL--------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLL 370 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHH
Confidence 344555556666666667777888888888 999999999999999999999999999999988 5567788
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVT 178 (536)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~ 178 (536)
++++.+++.+.+++++++ +.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||+++
T Consensus 371 ~ll~~gl~~~~~p~~~~~------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPia 444 (509)
T KOG2504|consen 371 TLLIAGLARLFLPFATTY------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIA 444 (509)
T ss_pred HHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccc
Confidence 889999999999999997 99999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCC
Q 009362 179 MAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMP 228 (536)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~ 228 (536)
+.+.+..+ +|...|+.+++..++....++..+
T Consensus 445 g~~~d~tg------------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 445 GLLYDITG------------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeeeeccC------------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 97743332 389999998888887766666555
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.2e-09 Score=99.89 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=106.6
Q ss_pred hhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhhccc
Q 009362 39 IPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSICTT 117 (536)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~ 117 (536)
.....|.+.++. |.+..+.+.+.+...++..+++++.|++.||+ +||+.+.++..+.+++.++..+..+.
T Consensus 216 ~~~~lp~~~~~~--------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 286 (355)
T TIGR00896 216 LIGWLPAILISH--------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH- 286 (355)
T ss_pred HHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 344567777777 99999999999999999999999999999999 56777778888888877777666542
Q ss_pred ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009362 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN-KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFE 186 (536)
Q Consensus 118 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 186 (536)
... ..-++.|++.|...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus 287 -----~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 -----GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -----HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 24578899999999888787765554 5677899999888888999999999999976654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=100.37 Aligned_cols=151 Identities=11% Similarity=-0.020 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHH
Q 009362 286 DLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAI 365 (536)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 365 (536)
.+..+.+.++...+.........|.+ ++.+|.++. ..+.......++..++.+..|+++||+|||++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~------------~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~ 93 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNF------------QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 34555566666667777778888887 444888776 45577778888899999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 366 QALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
+..+..+..++.+++..... ...+..+.+..+..+.+.....+....++.|..|++.++..+++.+....+|..+
T Consensus 94 l~~g~~~~~~~~~l~~~~~~-----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~ 168 (438)
T PRK10133 94 IITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII 168 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999988876532111 0123444444444444444444566666678777676666899999999999999
Q ss_pred HHHHHHhhh
Q 009362 446 GTVAFLWAS 454 (536)
Q Consensus 446 ~~~~~~~l~ 454 (536)
++.+.+.+.
T Consensus 169 g~~~g~~l~ 177 (438)
T PRK10133 169 AVVFGQSLI 177 (438)
T ss_pred HHHHHHHHH
Confidence 998887653
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.2e-09 Score=100.36 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=108.3
Q ss_pred hhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh-----chhHHH-HHhHHHHHHHHH
Q 009362 305 NLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRI-----GRVAIQ-ALGFFFMGVIYL 378 (536)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~ 378 (536)
....|.+.++ .|++..+.+ ..... .+...+ .++.|.++||+ |||+.+ ..+.++.+++..
T Consensus 8 ~~~~~~~~~~-~g~s~~~~g------------~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 8 GNTLPYWLRS-KNVSLKTIG------------FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred HhHHHHHHHH-cCCCHHHHH------------HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence 3445667776 788876432 22222 222222 77899999998 888864 566666666655
Q ss_pred HhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccc
Q 009362 379 AIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDN 458 (536)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~ 458 (536)
.+.+... ....+.+....+..........+...+++.|.+|+++|+.+.|+......+|.++++.+.+.+.+..+
T Consensus 73 ~l~~~~~-----~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 73 ILSFLVP-----STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHcCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5554432 11233333333333444444457777889999999999999999999999999999999988854332
Q ss_pred c--ccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 459 K--VNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 459 ~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
. ....+|+.+|++.+++.++..+..++..||.
T Consensus 148 ~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 148 ANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 1123499999988888777666655445554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=115.60 Aligned_cols=118 Identities=23% Similarity=0.188 Sum_probs=107.7
Q ss_pred CCChh-hhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNA-VVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
+.+.. +.|++.+...++.++++++.|+++||+++|+++.++.++.+++.++..+..+. +.++++.++.|++.+
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSL------ASVLVLFFLFGFSAG 337 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHH
Confidence 89988 99999999999999999999999999999999999988888888888877775 778888999999999
Q ss_pred CcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
...+...+++.+..|+++||+++++.+....+|.++++.+++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888887663
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=98.16 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=134.5
Q ss_pred HHHhhhhhhcchhhhHhhhhhhhccCCCCCCC-CChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQ-IPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLS 106 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 106 (536)
..++.+.....+....+...++. + .+....|.+.++..++=++.-...+++..|+|.|+++.++.+.+++=
T Consensus 215 ~~~l~~~~~~~~~~f~~~yl~~~--------gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 215 AAFLIGISHAAYYTFFSIYLQEL--------GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444544555555556666666 6 67778888888888888888899999999999999999999999998
Q ss_pred HHHhhhh-hcccccchhhHH----HHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHH-HHHHHHHHHHHHHHH
Q 009362 107 SLACGFS-ICTTKQCVLGSL----GFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS-MQGFGILASSTVTMA 180 (536)
Q Consensus 107 ~~~~~~~-~~~~~~~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~-~~~~G~~i~~~~~~~ 180 (536)
..+.+.. ++. +.. ++...+.|+..|..+.....++.+.+|++.|+++.+++.. ..++|..+|..++|+
T Consensus 287 ~~l~a~~~~~~------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 287 WLLYAYFSDPW------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHhcCCc------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888887 432 332 3345679999999999999999999999999999998875 568999999999999
Q ss_pred HHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHH-HHcCCC
Q 009362 181 VCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYW-RMTMPE 229 (536)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e 229 (536)
+.+..+. .....|...+.+.+.+.++..+. .++++|
T Consensus 361 l~~~~g~-------------~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 361 LYDAFGA-------------RGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHhcc-------------hhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9877653 23445777777777666665433 344544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-09 Score=99.74 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..+.......+..++.+.+.|.++||+|+|..+++|.+++..+.+++++... ++.+++.-..-+.+......
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--------y~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--------YPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--------hHHHHHHHHHhhhhHHHHHh
Confidence 4557788888999999999999999999999999999999999999988766 55666666667777777778
Q ss_pred cccccccccccccc-cchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARF-RSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
...++.++.+|.+. |++++|+.-.+..+|-.+||.++|.++ +..|+..+|+++++++++-..+-++.++.++.
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY------e~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY------EFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH------hhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 88899999999755 799999999999999999999999995 46688999999999999998888866655444
Q ss_pred c
Q 009362 493 R 493 (536)
Q Consensus 493 ~ 493 (536)
.
T Consensus 253 ~ 253 (464)
T KOG3764|consen 253 D 253 (464)
T ss_pred C
Confidence 3
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-09 Score=97.82 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=101.6
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccc----ccchhHHHH-HHHHHHHHHHHHhhhhhc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGD----LIGRRRVYG-LALMLMVLSSLACGFSIC 115 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~~~~ 115 (536)
...+++.++. |++....+.+--+.-+...+.+++.|..+| |+||||.++ .+.+...++.++..++.+
T Consensus 53 sy~tPyl~~l--------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaD 124 (498)
T KOG0637|consen 53 SYLTPYLQSL--------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAAD 124 (498)
T ss_pred ccccHHHHHc--------CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhh
Confidence 4556666777 999999998888888999999999999999 589988665 445555666666666644
Q ss_pred cc-----------ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchh-HHHHHHHHHHHHHHHHHHHHHHH
Q 009362 116 TT-----------KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGA-FIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 116 ~~-----------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~-~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
.. ..-...+++++-.+.-++.-.....+-+++.|.+.++++.+ +.+.+..+.++|..+|..+++++
T Consensus 125 ig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 125 IGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 20 11123456666666777777888899999999998777666 99999999999999999988754
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=97.40 Aligned_cols=177 Identities=13% Similarity=0.058 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcC----CCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYID----GNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR- 359 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~- 359 (536)
|.++.++..-+.--+.+|++..-+-.|+....+ +++.+ +......+....-+..+++||++||
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------------A~~l~~~y~slVY~t~i~GG~laDr~ 88 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------------ATGLFSAYGSLVYLTPIIGGWLADRV 88 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557777777888889999999998888887666 55553 2222222222333455689999999
Q ss_pred hchhHHHHHhHHHHHHHHHHhhccc-ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccc--cccchhhhHhH
Q 009362 360 IGRVAIQALGFFFMGVIYLAIGVPY-SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPA--RFRSTCHGISG 436 (536)
Q Consensus 360 ~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~ 436 (536)
+|+|+.+..+.+++.++.++++... . ....+.+...+...+....=+...++..|++|+ ..|-.++++..
T Consensus 89 LG~~~tI~lGail~~iGh~~L~~~~~~-------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY 161 (498)
T COG3104 89 LGTRRTIVLGAILMAIGHLVLAISSVS-------GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFY 161 (498)
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccc-------cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEE
Confidence 5999999999999999999998875 2 122333333344456666667778888999985 23778888889
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 437 AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 437 ~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
+..++|++++|++.+++. +++||+..|...++-+.++++..+..
T Consensus 162 ~~iNiGsl~~p~i~~~~~------~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 162 MGINIGSLIAPIITGLLA------INYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred EEeehHHHHHHHHHHHHH------HhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999994 56789999999998888888877733
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=100.75 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=102.1
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.++. +++.+++..++.|+|.+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~----~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVW----SLPVALVALAIASIGQGV 335 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHH
Confidence 6666555555555577788899999999999999999999999988888777664421 236677778899999999
Q ss_pred cchhhhHhhhccCCcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009362 139 DYPLSATIMSEFANKM-------TRGAFIAAVFSMQGFGILASSTVTMAVCKIFEA 187 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~-------~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 187 (536)
..+...++.+|..|.+ ++|...++.+....+|..+++.+.+.+++..+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988754 459999999999999999999999998876653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-06 Score=89.17 Aligned_cols=164 Identities=11% Similarity=0.052 Sum_probs=125.6
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHHHHHHHHHHHHHHHhhhhhcccc-
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVYGLALMLMVLSSLACGFSICTTK- 118 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~- 118 (536)
.+...+.+.+ +.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++.....
T Consensus 9 iLvlYl~~~l--------g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 9 ILVLYFLNFL--------GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred HHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3444555566 9999999999999988889999999999996 69999999999999999988876532100
Q ss_pred -cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Q 009362 119 -QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKM---TRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDND 194 (536)
Q Consensus 119 -~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~ 194 (536)
.......+++-.+..+|.|+.-|...+...|-++++ +|-..+.++..+.++|.++++++..++.+..+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~------- 153 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC------- 153 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence 111234667888899999999999999999998754 366788888899999999999888887432211
Q ss_pred ccccccCCCCchhHHHHHhhHHHHHHHHHH
Q 009362 195 VNKRQHQADIAWRLILMLGSIPAAFTYYWR 224 (536)
Q Consensus 195 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 224 (536)
.....+|...|.+.++..++.++..
T Consensus 154 -----fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 154 -----FGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred -----cccCcchHHHHHHHHHHHHHHHHHH
Confidence 0124579999999888777765544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-06 Score=82.00 Aligned_cols=376 Identities=11% Similarity=0.009 Sum_probs=192.5
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
+....++...+.-+.....+.+..+.+ .-+---.+...-.-.+..++.++..|.+.||..|.+++..+.+..-
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-------p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIF-------PGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQN 79 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHH
Confidence 445556666666666677777666653 2233344444555566778889999999999999998877766544
Q ss_pred HHHHHhhh----hhccccc-----chhhHHHHHHHHHhhhccC-cchhhhHhhhccC------CcccchhHHHHHHHHHH
Q 009362 105 LSSLACGF----SICTTKQ-----CVLGSLGFFRFLLGVGIGG-DYPLSATIMSEFA------NKMTRGAFIAAVFSMQG 168 (536)
Q Consensus 105 ~~~~~~~~----~~~~~~~-----~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~e~~------~~~~rg~~~~~~~~~~~ 168 (536)
++..+.+. .-.+... .....+++.-.+.|.-.-. ......+.=.||. +++.+.+..+...-.-.
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL 159 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL 159 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence 43332221 1111110 0112222222222221111 1111122223342 23445566666666667
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-Hc----CCCCcchhhhhhhcHHH
Q 009362 169 FGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR-MT----MPESARYTALVEQNVMQ 243 (536)
Q Consensus 169 ~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~----~~esp~~l~~~~~~~~~ 243 (536)
+.-+++|++.+.+.. ..+.+....+.+...++..+.= ++ ....|.- ..+++++++
T Consensus 160 ~ckllaPl~vG~l~t-------------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L-~~~~~~~~~ 219 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMT-------------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPAL-AVKKRSSES 219 (432)
T ss_pred HHHHHHHHHHHHHhh-------------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHh-cCCCCCccc
Confidence 889999999999853 3456666555555544432221 11 1222221 011111000
Q ss_pred HHHhHHHHhccccccccccCCCCCCCCChhhhhHHHh------hhh-hhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhc
Q 009362 244 AAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFL------RRH-GRDLFACATSWLLVDIVFYSSNLFQSKIYHQYI 316 (536)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (536)
.... +.++..+.++.+...+...+... +.+ ....+...+...+..+..-++......|+.. .
T Consensus 220 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~-~ 288 (432)
T PF06963_consen 220 ESSS----------DEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKS-Q 288 (432)
T ss_pred cccc----------cccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH-C
Confidence 0000 00000000011111111111111 001 1123333444333333344556666677777 5
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC--CchH
Q 009362 317 DGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK--HTNF 394 (536)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 394 (536)
|+++. ..+..-....+.++.|.++..++.+|+|..+.-.++......++.+..........+ ....
T Consensus 289 G~s~~------------~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 289 GYSPS------------VIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 88877 444677777888899999999999999998888777776655544433322210101 0111
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHH
Q 009362 395 GFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 450 (536)
..++......=++-.++--...-+..|..|+++||+..|+-+...++...+.-.+.
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222333344456678999999999999999999988877665554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=104.37 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.......+..++.++|.++.|.++||+|||++++.+.++..++.+..++..+ +....++-++.+++..+...
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~--------~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN--------YWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhccchhH
Confidence 4556777788899999999999999999999999999999999988887776 66777777777888888888
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+.+.+..|.+++++|+.+..+ ....+.++.+++...+++.. +|++.+++.....++.+++ +++.+|.++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r 259 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DWRWLFWIISIPSGLFLLL-WFLPPESPR 259 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence 999999999999999999999 88888899999999998853 7899999988888877776 435556654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=112.56 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=102.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhh--------------------hcccc
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFS--------------------ICTTK 118 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 118 (536)
|.+..+.|++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++. .+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 334 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG-- 334 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc--
Confidence 9999999999999999999999999999999888777666666666655544442 333
Q ss_pred cchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 119 QCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 119 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
+.++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+.
T Consensus 335 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 335 ----WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ----HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999999999999999999999999988884
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-08 Score=97.88 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=105.2
Q ss_pred HHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHH
Q 009362 300 VFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLA 379 (536)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 379 (536)
........++.+..+ +|-++.. . .......++..+..++.|+++|.+|||+.++.+.++..++.++
T Consensus 59 ~~~~~a~~l~~I~~d-iG~~~~~------------~-w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv 124 (599)
T PF06609_consen 59 VLVLPASILPYINAD-IGGSDNW------------S-WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIV 124 (599)
T ss_pred HHhccHHHHHHHHHh-cCCCccc------------h-HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHH
Confidence 333334445555555 7766542 2 3444556677777889999999999999999999999999998
Q ss_pred hhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 380 IGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
.+.... ....+....+.+.+ .+........++|..|.+.|..+.++.....-....+++.+...+.
T Consensus 125 ~atA~~--------~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~----- 190 (599)
T PF06609_consen 125 CATAQN--------MNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA----- 190 (599)
T ss_pred hhcCCc--------HHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc-----
Confidence 887766 22333333333332 2333445556799999999988777666544444446666665552
Q ss_pred ccccccchhhHHHHHHHHHHHHHhheee
Q 009362 460 VNATGVTIALLILGGVCFMGFAITYFFT 487 (536)
Q Consensus 460 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 487 (536)
.+.+|++.|++..+...++++..+++.
T Consensus 191 -~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 191 -AHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred -cCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 234899999998888777766554333
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-09 Score=101.36 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..+........+.+++.+.++++.||+|.|+++..+.++.+++.++..+... ...+.+++.-++.++......|
T Consensus 74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------~~~~~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 74 EKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------IGFYLLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------hcchhhHHHHHHhHHHHhHHHh
Confidence 4446677777899999999999999999999999999999999998888776 1223455566666666666778
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRET 490 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (536)
....+.++-.|+++|++..++.....++|.+++-++.|.+-+. ..||+..|++.+++.++..++.+.+..+.
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-----SLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----CCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999642 37999999999999988887776555543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-08 Score=90.73 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=129.4
Q ss_pred HHhhhhhhcchhhhHhhhhhhhccCCCCCCCCCh--hhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHH
Q 009362 29 LFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPN--AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLS 106 (536)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 106 (536)
.+....+........+.+..++ +.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 82 (338)
T COG0477 11 ALLLGLDLGLLSPALPLLLSTL--------SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG 82 (338)
T ss_pred HHHHHHhcchHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 3333466666777788888877 5555 58899999999999999999999999999999888888776666
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 009362 107 SLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK-MTRGAFIAAVFS-MQGFGILASSTVTMAVCKI 184 (536)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~-~~~~G~~i~~~~~~~l~~~ 184 (536)
.++.++..+ ...+.+++.|++.|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...
T Consensus 83 ~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 83 TLLLALAPN----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHhCcc----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667766665 1238999999999999999999999999999997 688999998888 5888999999888777543
Q ss_pred hhcccccCCcccccccCCCCchhHHHHHhhHHHHH
Q 009362 185 FEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
...+||..|.+.......
T Consensus 159 -----------------~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 159 -----------------LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred -----------------HhcchHHHHHHHHHHHHH
Confidence 234799977665555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=87.92 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH
Q 009362 19 FKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~ 98 (536)
.+.+.++++.+....+.....++ -..++.| |+|+...+.+.+....-.++.+++.|.++|++|++-..+.
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~--~fF~~rf--------GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGP--MFFQKRF--------GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH--HHHHHhh--------CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 33444444444443333322222 2356667 9999999999999999999999999999999999987776
Q ss_pred HHHHHHHH-HHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHH
Q 009362 99 ALMLMVLS-SLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTV 177 (536)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~ 177 (536)
+..+..+. -....++. +.=.++..+.|+............++...|.++.|++.+..+...++|.++.|++
T Consensus 336 ~a~~~tl~~H~~l~Ft~--------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Ii 407 (459)
T KOG4686|consen 336 SACILTLLGHSGLFFTF--------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPII 407 (459)
T ss_pred HHHHHHHHHhhhHHhhh--------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhh
Confidence 65554443 33333322 3334567788887776666567778888898999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCcccccccCCCCchhHHHHH-hhHHHHHHHHHHHcC
Q 009362 178 TMAVCKIFEATTTRDNDVNKRQHQADIAWRLILML-GSIPAAFTYYWRMTM 227 (536)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~-~~~~~~~~~~~~~~~ 227 (536)
++++.+. ...+.|--.|++ .+.+++....+.+.+
T Consensus 408 ag~i~d~----------------~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 408 AGFIADG----------------DGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hheeecC----------------CCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999532 222456555555 444555544444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-08 Score=97.34 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=98.5
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcc
Q 009362 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDY 140 (536)
Q Consensus 61 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 140 (536)
+....+++.++..++..++.+++++++||+|+|+.+.++.++.+++.+...+..-. ...+.+.+++.-++.|++.+...
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~g~~~~~~~ 342 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-APHNALLIVIAGILLNIGTALFW 342 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999998888777666554331000 01123667777888999999999
Q ss_pred hhhhHhhhccCC-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009362 141 PLSATIMSEFAN-------KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEA 187 (536)
Q Consensus 141 ~~~~~~i~e~~~-------~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 187 (536)
+...++++|..+ .++.|..++......-+|..+++.+.+++++..+.
T Consensus 343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999966 33456689999999999999999999999876653
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=96.24 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=115.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccc
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTF 416 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (536)
....+..++.+++.+.++.+.||++..+.+....++.++..++-.... +.+..++.-++.+++..+..|...
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--------s~~~~ialr~llGl~es~~wP~~~ 156 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--------SFPGLIALRFLLGLFESGGWPGVV 156 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhcccchHHH
Confidence 455666677888888999999999966555554444444333332222 245666777777777777779999
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+++.-+.+++|+..+|+.+....+|+++|+++...+.+..+.....||++.|++.++++++..++.++++|+...
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999999999999887654443446799999999999999999999989987655
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=98.09 Aligned_cols=149 Identities=13% Similarity=0.227 Sum_probs=123.3
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
..+..++............+.+.++.. +.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+
T Consensus 230 l~~~~~~~~~~~~~~~~~~~y~~~~vl-------~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 230 LLLAFFLQWLAFALMNTFLPYYFTYVL-------GNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHh-------cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 333444445555555666666666652 433 677888889999999999999999999999999999999999
Q ss_pred HHHHHhhhhh--cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-------ccchhHHHHHHHHHHHHHHHHH
Q 009362 105 LSSLACGFSI--CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK-------MTRGAFIAAVFSMQGFGILASS 175 (536)
Q Consensus 105 ~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~i~~ 175 (536)
++.++..+.. +. +.+++.-++.|++.+...+...++++|..+. ++.|...+.......+|..+++
T Consensus 302 ~~~~~~~~~~~~~~------~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 302 LGFLLLFFLGPGSP------WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred HHHHHHHHHHhhhH------HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999988886 54 9999999999999999999999999999873 3458999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 009362 176 TVTMAVCKIFEA 187 (536)
Q Consensus 176 ~~~~~l~~~~~~ 187 (536)
.+.+.++...+.
T Consensus 376 ~i~g~~l~~~Gy 387 (428)
T PF13347_consen 376 AIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHhCc
Confidence 999998877654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=99.25 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=123.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhh-ccccc---chhhHHHHHHHHHhh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI-CTTKQ---CVLGSLGFFRFLLGV 134 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~r~l~G~ 134 (536)
|.++.+.|.+.+...++.+++....+++.+|++.|+++.++.++.+++.+...+.. ..+.. ...+.++..-++.++
T Consensus 284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~ 363 (468)
T TIGR00788 284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV 363 (468)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence 99999999999999999999999999999999999999999999998886643211 00000 001455566788888
Q ss_pred hccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHH-h
Q 009362 135 GIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILML-G 213 (536)
Q Consensus 135 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~-~ 213 (536)
+.+........++.+.+|++++|...++.....++|..+++.+++.+.+..+. ..++++.++...+ +
T Consensus 364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~------------~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGI------------TCDNSNNLWLLILGH 431 (468)
T ss_pred HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CcccccchHHHHHHH
Confidence 88888999999999999999999999999999999999999999999888763 1233333343333 4
Q ss_pred hHHHHHHHHHHHcCCC
Q 009362 214 SIPAAFTYYWRMTMPE 229 (536)
Q Consensus 214 ~~~~~~~~~~~~~~~e 229 (536)
.+..++.+....++|+
T Consensus 432 ~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 432 SLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4555555555567886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=81.48 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=179.3
Q ss_pred hhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccc
Q 009362 41 PIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQC 120 (536)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (536)
|.+-.+.+.+ +....++|.+.-+.+-..++.+.+.|-++|+-|||+.-+.-++..+++++ .-.++.|
T Consensus 58 PYvYyLYstY--------gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqY---- 124 (454)
T KOG4332|consen 58 PYVYYLYSTY--------GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQY---- 124 (454)
T ss_pred ceeeeeehhc--------CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCce----
Confidence 4444455556 78888999888888888889999999999999999976665555555443 3346666
Q ss_pred hhhHHHHHHHHHhhhccCcchhhhHh-hhccCCcccchhHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhccccc
Q 009362 121 VLGSLGFFRFLLGVGIGGDYPLSATI-MSEFANKMTRGAFIAAVF--------SMQGFGILASSTVTMAVCKIFEATTTR 191 (536)
Q Consensus 121 ~~~~l~~~r~l~G~~~g~~~~~~~~~-i~e~~~~~~rg~~~~~~~--------~~~~~G~~i~~~~~~~l~~~~~~~~~~ 191 (536)
..++++|.+-|++.+..+..--++ +.|-- ++|+.-.-+.. .+..+-.+++.+.+-.+.+.++
T Consensus 125 --kVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s----- 195 (454)
T KOG4332|consen 125 --KVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS----- 195 (454)
T ss_pred --EEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-----
Confidence 889999999999998887776554 45544 23433222221 2223333444444444443332
Q ss_pred CCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCC
Q 009362 192 DNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP 270 (536)
Q Consensus 192 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (536)
.|--.+|-..+.+..+. .+..--..|. + .+..+. +++.+..+..
T Consensus 196 ------------lGPVAPFdAAacfLaigmAvil~~W~EN--y-----gdps~~-kdlltqf~ga--------------- 240 (454)
T KOG4332|consen 196 ------------LGPVAPFDAAACFLAIGMAVILSSWSEN--Y-----GDPSEN-KDLLTQFKGA--------------- 240 (454)
T ss_pred ------------cCCCCchHHHHHHHHHHHHHHHhhhhhc--c-----CChhhh-HHHHHHhhHh---------------
Confidence 23334454333222222 2221111111 0 111111 1111100000
Q ss_pred ChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 271 QYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
..-.....+..++-.+...+-...+.....|.|..-.+.-+.+. ++......++.++|+
T Consensus 241 ------a~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPh---------------GfiFatFMlASmLGS 299 (454)
T KOG4332|consen 241 ------ARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPH---------------GFIFATFMLASMLGS 299 (454)
T ss_pred ------HHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCc---------------hhHHHHHHHHHHHhh
Confidence 00000111222223333333344444455666654322111111 134444555666666
Q ss_pred HHHHHHHHhhch--hHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccccc
Q 009362 351 FVTVFFIDRIGR--VAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFR 428 (536)
Q Consensus 351 ~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 428 (536)
-+..++..|-.. ...+.+.+.+....+.+..........+..+...++.++++-...+.. +|...-+-++..|.+.|
T Consensus 300 Sla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlf-wPSimkmRsqyIPEear 378 (454)
T KOG4332|consen 300 SLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLF-WPSIMKMRSQYIPEEAR 378 (454)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhc-chHHHHHHHhhCCHHHH
Confidence 666565554332 234555555555554444433331112223333344444444444443 47777777889999999
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 429 STCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 429 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++.+-+...=-++-..++ .-.+.+ . ....+-+..|-+++++..++.+...
T Consensus 379 stimNfFRvPLnifvClv---Lynlh~-~--~~p~~tr~mf~icS~~~~~a~i~~~ 428 (454)
T KOG4332|consen 379 STIMNFFRVPLNIFVCLV---LYNLHV-D--AFPTTTRNMFGICSAFLFVASILQR 428 (454)
T ss_pred hhhhhheechhhHhhhhh---heeccc-c--cCccccchhhhhhHHHHHHHHHHHH
Confidence 887665543333222211 111111 1 1233556778888877777655543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=94.54 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchh
Q 009362 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPL 142 (536)
Q Consensus 63 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 142 (536)
+..+.+.....+...++.+++++++||+|+|+.+.++.++.+++.+...+.+. ++.+.+++..++.|++.+...+.
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP----SNVWLIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999999888776654443333211 12367788889999999999999
Q ss_pred hhHhhhccCC-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009362 143 SATIMSEFAN-------KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEA 187 (536)
Q Consensus 143 ~~~~i~e~~~-------~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 187 (536)
..++++|..+ .++.|...+.......+|..+|+.+++.+.+..+.
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999885 23346778889999999999999999999887664
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=93.98 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=122.3
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++. +.+.+.+.+.|+-.+.
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~------~~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP------WVISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH------HHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch------HHHHHHHHHHHHHHHH
Confidence 4566779999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred cchhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
.......|+++.+|+|..++...+ .+.+.++|..+.+.++|.+. ++.|.+..|++.+.+.
T Consensus 329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-------------------d~~G~~~tylimg~iv 389 (412)
T PF01306_consen 329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-------------------DRIGFQHTYLIMGLIV 389 (412)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-------------------hhcCcHHHHHHHHHHH
Confidence 999999999999998887777776 47888999999999999995 4456888888866666
Q ss_pred HHH-HHHHHcCCCCc
Q 009362 218 AFT-YYWRMTMPESA 231 (536)
Q Consensus 218 ~~~-~~~~~~~~esp 231 (536)
+.. ++..+.+++.+
T Consensus 390 ~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 390 LPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHS--SS
T ss_pred HHHHHHheeeecCCC
Confidence 654 44445554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-06 Score=81.55 Aligned_cols=135 Identities=14% Similarity=0.054 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhH
Q 009362 66 SPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSAT 145 (536)
Q Consensus 66 g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 145 (536)
+.+.-+-.+...+.-+.+.++.+|+..+.=..+..+++.++.++.+++++. +.=+++-.+.+++.|........
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v------~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSV------WVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccch------hHHHHHHHHHhhhhhhhHHHHHH
Confidence 445555556667777778888888876555556666788888889998886 88889999999999988888888
Q ss_pred hhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHH-
Q 009362 146 IMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWR- 224 (536)
Q Consensus 146 ~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~- 224 (536)
+.. .+++ ...+-+..+.+.+.++|+..-..+.. . ..+-|..+++...+.++..+.+
T Consensus 136 lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~-----------------g~s~~~tll~~~~lp~~~~~~~f 192 (402)
T PF02487_consen 136 LTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L-----------------GLSPRTTLLIMLVLPAIFLLSYF 192 (402)
T ss_pred HHH-hcCc----cccccccCCcChhhHHHHHHHHHHHH-h-----------------CcCHHHHHHHHHHHHHHHHHHHH
Confidence 754 5553 35677777888888888776655532 1 2234777777655554444333
Q ss_pred HcCCC
Q 009362 225 MTMPE 229 (536)
Q Consensus 225 ~~~~e 229 (536)
+.+|.
T Consensus 193 ~~L~~ 197 (402)
T PF02487_consen 193 FLLPS 197 (402)
T ss_pred Hhhcc
Confidence 34443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-09 Score=109.53 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..........++.++|+++.|++.||+|||+.+..+..+..++.++..+.... ..+..+.+.-++.+++..+..+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccc
Confidence 34466777788999999999999999999999999999999988888877630 1234444555555666666668
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
....+..|..|++.|+...++.+....+|..++..+.....+.. +..+|+..+.+.++.+++..+... ++||+.+
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~Wr~~~~~~~~~~l~~~~~~~-~~pESP~ 196 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS---DNWGWRILLIFGAIPSLLVLLLRF-FLPESPR 196 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc-ccccccc
Confidence 88899999999999999999999888888877776654432211 134688888877777766555554 7888754
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=84.31 Aligned_cols=125 Identities=16% Similarity=0.249 Sum_probs=107.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.++.+..+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+. ++...+++..++.+++.+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHhhc
Confidence 667777788888888888888999999999999999999999999999999888772 1348889999999999999
Q ss_pred cchhhhHhhhccCC-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009362 139 DYPLSATIMSEFAN-------KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEA 187 (536)
Q Consensus 139 ~~~~~~~~i~e~~~-------~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 187 (536)
..+...++++|..+ .++-|...+......=+|.+++..+.++++...+.
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999998775 23347788888888889999999888888877664
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00016 Score=71.06 Aligned_cols=157 Identities=8% Similarity=0.037 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHh-hhhhcccccccchhHHHHH
Q 009362 20 KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIG-QLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~ 98 (536)
+.+....+..|+..++.+ ++-.+.+.+..+.. +.+.+.+.++-+...+..++. .++.+++++|++|++++-+
T Consensus 7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~---~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~ 79 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAK---GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhhhhheeeccc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHH
Confidence 344444455555554443 34445555410000 223467888888887776666 8999999999999999888
Q ss_pred HHHHHHHHHHHhhhh--hcccccc-----------------------hhhHHHHHHHHHhhhccCcch-hhhHhhhccCC
Q 009362 99 ALMLMVLSSLACGFS--ICTTKQC-----------------------VLGSLGFFRFLLGVGIGGDYP-LSATIMSEFAN 152 (536)
Q Consensus 99 ~~~~~~~~~~~~~~~--~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~ 152 (536)
....+.+..+++++. ++.+... +.|...+.-+...+-...... .-..++.|.++
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t 159 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT 159 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777766666654 1100000 013333444444444444444 66789999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 153 KMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 153 ~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
.+|-.|..+++..+.++|.++++.+..++.+
T Consensus 160 ~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 160 IDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=68.73 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=73.0
Q ss_pred hhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhh
Q 009362 32 DAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACG 111 (536)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 111 (536)
.+..++.+.|++|.+.+|. ++|.++.|++.+..++||.+|++...++.++..+++.+..+.+...+..+.++
T Consensus 4 mGigRFayTplLP~M~~~~--------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADG--------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred hhhHHHHHHhHhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999 99999999999999999999999999999998899999999999999999999
Q ss_pred hhhcc
Q 009362 112 FSICT 116 (536)
Q Consensus 112 ~~~~~ 116 (536)
+..++
T Consensus 76 ~~~~~ 80 (85)
T PF06779_consen 76 LTHSF 80 (85)
T ss_pred HHhch
Confidence 99886
|
Note that many members are hypothetical proteins. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=93.09 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccc
Q 009362 336 RHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (536)
........++..++.++.|+++|++|||+.+.++.+...++.++...... +..+.+.-++.+++..+...+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--------~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--------WYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhccchhhhhhcc
Confidence 46677778889999999999999999999999999999999999888776 4555555566666666666777
Q ss_pred cccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 416 FIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 416 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
..+.+|..|++.||...+..+....+|..++ ++.+...... ..+|+..+.+..+.+++..+. .++.||+.+
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~----~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~ 234 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV----YAGWRIPLGLALIPAVILALG-MLFLPESPR 234 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC----CccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence 8899999999999999999998888877777 5555543221 148888888888888777777 548887654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-06 Score=88.08 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=86.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcch
Q 009362 62 NAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYP 141 (536)
Q Consensus 62 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 141 (536)
+...+++...+.++.+++.+++++++||+|+|+++..+..+.++..++..+.++. +...+++.-++.|++.+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~ 337 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQ----ASITMFVFIFVIGVLHQLVTP 337 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchh----HHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888889999999999999999999998876655554444443333221 113344555677888777777
Q ss_pred hhhHhhhccCC-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009362 142 LSATIMSEFAN-------KMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFE 186 (536)
Q Consensus 142 ~~~~~i~e~~~-------~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 186 (536)
...++++|..+ .++.|...+......-+|..+++.+++.++...+
T Consensus 338 l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 338 IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76778887766 3334666677778899999999999999987654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=86.16 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred HHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccC
Q 009362 72 ALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFA 151 (536)
Q Consensus 72 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 151 (536)
..+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+- .....+++.+|++.. +.+.+.+.|..|.+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r--n~~tvllf~arafis----g~fqvaYvYtPEVy 463 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR--NAYTVLLFTARAFIS----GAFQVAYVYTPEVY 463 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc--chhHHHHHHHHHHHh----chheEEEEecCccc
Confidence 345566788899999999999999999999999998887766543 001135556666654 45667889999999
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCc
Q 009362 152 NKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESA 231 (536)
Q Consensus 152 ~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp 231 (536)
|..-|+...|.-..+.-+|.++.|+++... ...-..+..+.+...++..+..+++|-.+
T Consensus 464 PTavRatgvGtcSsmaRIggI~~p~iA~~~---------------------e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 464 PTAVRATGVGTCSSMARIGGIFSPVIAMRA---------------------ELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhcchhhhhhHHhhhhhhhhHHHHHh---------------------ccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999999999999222 11223444555666666666667776443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-07 Score=86.01 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
..........++.+.|.++.|++.||+|||++....++++.++.++.+.... ...+....+.+.++=...+++-.+-.|
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCc
Confidence 5556777888999999999999999999999999999999999886666554 111223455556666667777777789
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..-++++|....+.||+-.+.+.++..+|...|.++
T Consensus 164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred chHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence 999999999999999999998877777665555443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.6e-07 Score=72.97 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=96.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
++++..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.+... -++. +.++.+-.+.|++.+.
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~------~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNS------YTLYPASALLGFGAAL 105 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhH------HHHHHHHHHHhhhhHH
Confidence 34444444456666777788888888999999999999999999986655543 3443 8899999999999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
.++..-.++.+..++++|++..+++......+.++|.++...+
T Consensus 106 lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887776
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.6e-07 Score=78.99 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHH
Q 009362 296 LVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGV 375 (536)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 375 (536)
..+...|.+..|.|.+-++ +|+++.|.+ .......++..+| +..|.+.|++|.+.++.+|.....+
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~-l~~sq~~l~------------~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSR-LGYSQSQLN------------TLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred HhcCcccchhhhhHHHHHH-hCCCHHHHH------------HHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3445668888888877655 999887432 4445555565554 6889999999999999999999999
Q ss_pred HHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 376 IYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
++..+......... ..+.+.+.++....+......+........+.+| ++||++.|+.-....+++.+-..+...+.+
T Consensus 79 GY~~~~l~~~~~i~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 79 GYGLLWLAVSGRIP-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHhCccC-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 99888776652222 1234444444444433333334444455568888 579999999999999988888777776654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=78.23 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=119.9
Q ss_pred hhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhhccc
Q 009362 39 IPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSICTT 117 (536)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~ 117 (536)
.-.-+|.+..|- |+|..+.|++.+...+..+..++....+++|. .+|+..+..+.++.++.+.+.+.+.-
T Consensus 227 ~~~WLP~ili~~--------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~- 297 (395)
T COG2807 227 VIGWLPAILIDR--------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ- 297 (395)
T ss_pred HHHHHHHHHHHc--------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh-
Confidence 334578888888 99999999999999999999999999999965 67788888888888888888887762
Q ss_pred ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccc
Q 009362 118 KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK-MTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVN 196 (536)
Q Consensus 118 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~ 196 (536)
..+..-++.|+|.|..++.+.+++.+-.+. ++-++..++.+....+=..+||.+.|++-+.++
T Consensus 298 ------~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g---------- 361 (395)
T COG2807 298 ------LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG---------- 361 (395)
T ss_pred ------HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC----------
Confidence 223335999999999999999999987764 455666666666666667788999999965544
Q ss_pred ccccCCCCchhHHHHHhhHHHHHHHHH
Q 009362 197 KRQHQADIAWRLILMLGSIPAAFTYYW 223 (536)
Q Consensus 197 ~~~~~~~~~w~~~f~~~~~~~~~~~~~ 223 (536)
+|+......+...+...+.
T Consensus 362 --------sw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 362 --------SWSAPLVLLALATLLMLIF 380 (395)
T ss_pred --------ChHHHHHHHHHHHHHHHHH
Confidence 5999888766666655444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-06 Score=78.29 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+..+...++...+.........|.+. +.++.+.. .+.........+..+.++..+++.+|+|+|+.+
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~-~~f~ls~~------------~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi 81 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLK-EVFDLTYF------------EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGI 81 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHH-HHhCccHH------------HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHH
Confidence 34444445555555555666666554 44777766 444566666677777888899999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+..+++++..++.-... ...+.......+..+.+-....+....++..+.|++..+.-+.+...++.+|++++
T Consensus 82 ~lgL~l~avg~~lF~pAa~-----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~g 156 (422)
T COG0738 82 VLGLLLYAVGAALFWPAAS-----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILG 156 (422)
T ss_pred HHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHH
Confidence 9999999999888754333 11233333333333333333445666777888888888888999999999999999
Q ss_pred HHHHHhhhccc---c----------cccccccchhhHHHHHHHHHHHHHhh
Q 009362 447 TVAFLWASHDD---N----------KVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 447 ~~~~~~l~~~~---~----------~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
|.+.+++..+. + ..+...++.++...+...++..+...
T Consensus 157 p~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 157 PLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred HHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999887631 0 00122467777777777766655554
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=76.16 Aligned_cols=369 Identities=10% Similarity=0.080 Sum_probs=206.8
Q ss_pred CCChhhhH-HHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNAVVS-PMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
+++..+.. -+.-...-.+.+.-++.=.+.|..-.|+++++-.+......++..+.++. +.+=+.-++.|...+
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV------~~mQvlE~FyG~~tA 110 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSV------KAMQVLEFFYGPATA 110 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCc------hheeeehhhcChHHH
Confidence 66665543 22223334455666666678999988999988888888888888888886 888888899998766
Q ss_pred CcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
...+-++|+-+..+|+++.++.+...++.-.|...|..++..+.. .+..++...-.+.....
T Consensus 111 -aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs-----------------~~~~sy~~LN~ISL~~~ 172 (433)
T KOG3810|consen 111 -AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS-----------------LETLSYTTLNYISLAEV 172 (433)
T ss_pred -HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh-----------------hcccchhhhchhhHHHH
Confidence 466778999999999999999999999988898888888888753 24445666666655555
Q ss_pred HHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhH----HHh-hhhhhhHHHHHH
Q 009362 218 AFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISK----RFL-RRHGRDLFACAT 292 (536)
Q Consensus 218 ~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 292 (536)
.+......++|..+|-+..++.+.+.. ..+.++.....+.....+.... ... .-..+.++...+
T Consensus 173 ~ia~~~A~fLP~v~rSl~f~~~~~~~~-----------v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSl 241 (433)
T KOG3810|consen 173 TIAVLLALFLPRVKRSLYFHRLEDKIS-----------VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSL 241 (433)
T ss_pred HHHHHHHhhCCCCchhhhhhcccccce-----------eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence 556666677877664321111111100 1111111111100010000111 110 011233444444
Q ss_pred HHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh--HHHHHhH
Q 009362 293 SWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV--AIQALGF 370 (536)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~ 370 (536)
-+.....+++-...+....-++ .. +.... ...+..=++..+.++++.+..|.+--++.|. .++.++.
T Consensus 242 WwAl~scg~~QV~nY~Q~LW~~-~~-~~~~~---------vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s 310 (433)
T KOG3810|consen 242 WWALASCGYYQVTNYTQILWKE-VA-PNPAN---------VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGS 310 (433)
T ss_pred HHHHhhchhHHHHHHHHHHHHh-hC-CCchh---------hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHH
Confidence 5555556666666666555555 22 11100 0112233334455566777788876666554 3445555
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHH
Q 009362 371 FFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 450 (536)
...+.+++.+..... .|+....+.++........ ++...-+++....+.-|...|+..++.-+-. .++.
T Consensus 311 ~~~agllf~m~~t~~-------Iw~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQ---silT 379 (433)
T KOG3810|consen 311 AVQAGLLFIMAQTQH-------IWVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQ---SILT 379 (433)
T ss_pred HHhhhhhhhhhcccc-------eehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHH---Hhhe
Confidence 555555555544333 3344444444444444433 4443444455556777888888776543332 2232
Q ss_pred Hhhhccccc-----ccccccchhhHHHHHHHHHHHHHhh
Q 009362 451 LWASHDDNK-----VNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 451 ~~l~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
-...|..+. ..-.-|..-|.+.+++.+++..+.+
T Consensus 380 ~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 380 LIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred EEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 223332221 0011244567788888887766654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-05 Score=69.69 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccc-----ccch
Q 009362 18 HFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGD-----LIGR 92 (536)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~Gr 92 (536)
....+..+.+.+...|.-.+... .+|.+.+.- |.|.++.+...-++. -+ .--+.|.++.| |+||
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~ay~-P~-sLKllWaPiVDs~y~k~~Gr 97 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSFAYW-PF-SLKLLWAPIVDSVYSKRFGR 97 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhhhhh-HH-HHHHHHHhhhHHHHHHhhcc
Confidence 34455666677888998888888 889888866 888887765433221 11 23467888999 9999
Q ss_pred hHHHH------HHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHH
Q 009362 93 RRVYG------LALMLMVLSSLACGFSI-CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFS 165 (536)
Q Consensus 93 r~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 165 (536)
||..+ +|.++..++...--... +-..+ +...+...-++.-+.++.--.+.-.+.-.+..+++-|-+......
T Consensus 98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p-~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V 176 (510)
T KOG3574|consen 98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLP-NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV 176 (510)
T ss_pred ccceeeehHHHHHHHHHHHhhCCCcccccCCCCc-chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence 98543 33333333322111111 10000 113343445666666676677777777788888888888876666
Q ss_pred HHHHHHHHHHHHH
Q 009362 166 MQGFGILASSTVT 178 (536)
Q Consensus 166 ~~~~G~~i~~~~~ 178 (536)
+.+.|..++..+-
T Consensus 177 g~~~GyfL~~~if 189 (510)
T KOG3574|consen 177 GQTAGYFLGNVVF 189 (510)
T ss_pred HHhhhHHhhccee
Confidence 6666666665443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-05 Score=72.10 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=127.2
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhccccc-ccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGD-LIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
|++..|..-+++....|..++-...|++.. |.++|+.-.+++....++..+..++... .+.+.+...-++.|++.|
T Consensus 240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~---~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 240 GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL---GSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhhh
Confidence 999999999999999999999999999877 7788888888888888887765554321 123889999999999999
Q ss_pred CcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
.......+.+.+..++++.|.++|.+...+.++..++..+++.+.+....... .....+|-.+|.+.++..
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~---------~~~~~aY~~VF~lEa~ll 387 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG---------NSPALAYGVVFALEAVLL 387 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876654110 024557888898877777
Q ss_pred HHHHHHH
Q 009362 218 AFTYYWR 224 (536)
Q Consensus 218 ~~~~~~~ 224 (536)
++.+.+.
T Consensus 388 ~~a~~ll 394 (403)
T PF03209_consen 388 LAALVLL 394 (403)
T ss_pred HHHHHHH
Confidence 7665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00052 Score=69.44 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=123.3
Q ss_pred cchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhhc
Q 009362 37 FCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSIC 115 (536)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~ 115 (536)
+.....+..+..++ +.+...+.-..+.+.-...+..+.++.++|-| ||-+++.++.++..++..+..++..
T Consensus 55 g~~~nlv~ylt~~~--------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~ 126 (571)
T KOG1237|consen 55 GLVSNLVTYLTLEL--------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAM 126 (571)
T ss_pred cchhHHHHHHHHHh--------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888 88888888888888888889999999999965 9999999999888888655444322
Q ss_pred cc-------------------ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCC---ccc---chhHHHHHHHHHHHH
Q 009362 116 TT-------------------KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFAN---KMT---RGAFIAAVFSMQGFG 170 (536)
Q Consensus 116 ~~-------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---rg~~~~~~~~~~~~G 170 (536)
.. .......++.+.-+..+|.|+.-+...++-+|-++ +++ +...+..+....++|
T Consensus 127 ~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g 206 (571)
T KOG1237|consen 127 IPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGG 206 (571)
T ss_pred hhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHH
Confidence 11 00112477778888889999999999999999998 322 236777788888888
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHH
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRM 225 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 225 (536)
..++..+-.++ .++.+|.+-|.+..+..++++++++
T Consensus 207 ~l~a~t~~vyi-------------------q~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 207 ALLAQTVLVYI-------------------QDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHHHHHHhh-------------------hhcccceeeccHHHHHHHHHHHHHH
Confidence 88887777666 4677999999987777666655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-05 Score=80.01 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=109.5
Q ss_pred HHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hchhHHHHHhHHHHHHHHHH
Q 009362 301 FYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR-IGRVAIQALGFFFMGVIYLA 379 (536)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~ 379 (536)
+|++...+..|+.+.+|++... +...........-+..++++++.|+ +||++.+.++.++..++..+
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~------------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~l 70 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSEST------------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHAL 70 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566666666766667776552 2222333333334455678888886 69999999999998888877
Q ss_pred hhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccccccc---ccchhhhHhHHHHHHHHHHHHHHHHhhhcc
Q 009362 380 IGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR---FRSTCHGISGAFGKVGAIIGTVAFLWASHD 456 (536)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~ 456 (536)
+.+................+...+..++..+.-|...+...|.++++ .+.....+.....++|+.+++.+.+++.+.
T Consensus 71 lai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 71 LSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred HHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76543200000111122223333344444555577777888888753 366777888888999999999999988643
Q ss_pred cc-cccccccchhhHHHHHHHHHHHHHhh
Q 009362 457 DN-KVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 457 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+ ..+..+|..+|.+.++++++++++..
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 21 01134688899998888888877765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=77.44 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=106.4
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccccc
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAEL 422 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (536)
.+..++.+...|.++||+|||..+....+...+..+.+.+.. ++..+...+. ++........++++++.
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~~~~l~--g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFLLLGLS--GGFSAIFSVGFAYVADI 140 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhhhcccc--cchhhhhhhhhhheeec
Confidence 456667777899999999999999888877777666555433 2333322222 22223346778899999
Q ss_pred ccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccchh
Q 009362 423 FPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLE 496 (536)
Q Consensus 423 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (536)
...+.|....|+.+.....+..++|.+.+.+.+ ..|+..+|.+..+..++..+....++||+...+.+
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------hcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999999999999999955 45788999999999999999999899998765544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00019 Score=68.98 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=78.9
Q ss_pred HHHHHHHhhhhhhcchhhhHhhhhhh--hccCCCCCCCCChhhhHHHHHH---HHHHHHHhhhhhcccccccchhHHHHH
Q 009362 24 IAGMGLFTDAYDLFCIPPIMKLLGRI--YYSDGADRFQIPNAVVSPMLAL---ALLGTVIGQLVFGRLGDLIGRRRVYGL 98 (536)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~g~~~s~---~~~~~~i~~~~~g~l~dr~Grr~~~~~ 98 (536)
++.+.+++.|.-.+.....+|.+.++ - +.|.+|.|.+.-+ |++=..-+.++=.....|+||||..++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~--------~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAK--------KVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccC--------CCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence 44556788888877766678888777 4 7788887654221 111112222223333448999986543
Q ss_pred ------HHHHHHHHHHHh----------hhhhccc-ccch--hhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhH
Q 009362 99 ------ALMLMVLSSLAC----------GFSICTT-KQCV--LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAF 159 (536)
Q Consensus 99 ------~~~~~~~~~~~~----------~~~~~~~-~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~ 159 (536)
|..+..++.-.. .+..+-. ...+ ...+...-++.=+-++---.+.-.+.-.+..+++++.+
T Consensus 76 P~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~A 155 (544)
T PF13000_consen 76 PIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYA 155 (544)
T ss_pred HHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchH
Confidence 333332222220 0000000 0000 11223333333333444445555666667778889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 009362 160 IAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 160 ~~~~~~~~~~G~~i~~~~~~~l 181 (536)
......+.+.|..++..+--.+
T Consensus 156 STcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 156 STCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HHHHHhHhhhhHHHHHHHHHhh
Confidence 8777777777777666555444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=77.15 Aligned_cols=196 Identities=11% Similarity=-0.013 Sum_probs=122.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhch-
Q 009362 284 GRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGR- 362 (536)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr- 362 (536)
+|.++...+..+.....+.....-.-.|+++ +..+... ..-++......++.++++++.++...|.+.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~-lD~~A~~----------~ffG~viaa~slg~~i~~liF~~Ws~k~~~~ 101 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQK-LDPTATA----------TFFGLVIAASSLGHAIFSLIFGIWSNKTGSV 101 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhh-cCCCCCc----------chhhHHHHHHHHHHHhcchhhcccccccCCc
Confidence 3556666666666555444443333345444 2222221 123355566778888999999999999886
Q ss_pred hHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHH
Q 009362 363 VAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVG 442 (536)
Q Consensus 363 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 442 (536)
|+.++.+.+++.++.++....... ..+..+++.+.-++.+++. +.....-.|+++..-.+.|.++++..+...-+|
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~---~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYV---PNGVKYLMLVARILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 788999999999998888544431 1112233333333333332 334667788888777788888988888877778
Q ss_pred HHHHHHHHHhhhccc--c-----cccccccchhhHHHHHHHHHHHHHhheeeccccccc
Q 009362 443 AIIGTVAFLWASHDD--N-----KVNATGVTIALLILGGVCFMGFAITYFFTRETMGRS 494 (536)
Q Consensus 443 ~~~~~~~~~~l~~~~--~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (536)
.++||.+...+.... | ...-.-|..+-|+.+++.++..++..++.+|..+..
T Consensus 178 ~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred HHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 787776554432111 1 011123667788889999998888887887765443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-06 Score=82.94 Aligned_cols=141 Identities=16% Similarity=0.023 Sum_probs=122.5
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+..+...|........|-++.-++.+++..++|+-+++.+++.+..+=.+..+...|. |+.+...+++|+..+.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~------W~vLPieilqgit~al 475 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNP------WMVLPIEILQGITHAL 475 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCc------hheeeHHHHHHHHHHH
Confidence 6677777888888888888899999999999999999999999999999999999986 9999999999999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVF-SMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
.+.+..+|++...||+.|..+.++.+ ...++|--+|+++|+.+. +..+=|..|.+.++.+
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-------------------~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-------------------ERFGARTTFRIFGIAC 536 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh-------------------eeehhHHHHHHHHHHH
Confidence 99999999999999999999999875 456799999999999985 4456688888877777
Q ss_pred HHHHHHH
Q 009362 218 AFTYYWR 224 (536)
Q Consensus 218 ~~~~~~~ 224 (536)
++.++..
T Consensus 537 l~~l~~~ 543 (618)
T KOG3762|consen 537 LVTLALF 543 (618)
T ss_pred HHHHHHH
Confidence 6654443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-05 Score=71.52 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccc
Q 009362 334 VARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
.+.....++.+..++..+.+-|+.||+|-|...+++....+++..+=........++.......................
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc
Confidence 45566777777888888899999999999999999999998887765554441111111111222222222222222222
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccch--hhHHHHHHHHHHHHHhh
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTI--ALLILGGVCFMGFAITY 484 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~ 484 (536)
...-+..--+|+++|+++..+..+.+.+|.+++.++.+.+.......++..|.. .|+..++++.+.+++..
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~ 232 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVL 232 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322344556899999999999999999999999998888876653233444443 35555555555444444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.7e-06 Score=57.93 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=55.4
Q ss_pred HHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH
Q 009362 28 GLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLM 103 (536)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 103 (536)
.++......+..-|.+|...++. |++..++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~--------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQL--------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34444445566667777777777 999999999999999999999999999999999998877665543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0015 Score=61.91 Aligned_cols=175 Identities=11% Similarity=0.016 Sum_probs=88.2
Q ss_pred hhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhh
Q 009362 33 AYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGF 112 (536)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 112 (536)
-..+.....+.++..+++... +.+..-....+....+...+....-..+.-|. |+++.........+..+.+.+
T Consensus 31 LlpWN~fiTa~~y~~~~~~~~-----~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~ 104 (406)
T KOG1479|consen 31 LLPWNMFITASDYYYYRFPGY-----HNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDL 104 (406)
T ss_pred ccchHhhhccHHHHHhhcCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667777766311 12233333444444445555555555566662 222222222222222222222
Q ss_pred hh---cccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 113 SI---CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 113 ~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
+. +......+...++.-.+.|++.|..........++. |++.-... ..+.+++..+..++.-......+
T Consensus 105 ~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqav----m~G~a~aG~l~Sl~~i~tka~~~--- 176 (406)
T KOG1479|consen 105 ALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAV----MSGQALAGTLTSLLRILTKAAFS--- 176 (406)
T ss_pred HhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHH----HhcchhHhHHHHHHHHHHHHhcC---
Confidence 22 111122346777778888999988888888877775 44433322 34555555555544433322222
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcc
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESAR 232 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~ 232 (536)
....+=...|.++.+..+++++....+|..|-
T Consensus 177 -----------~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 177 -----------DSRTSALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred -----------CCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 22334445566666666667666666676664
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00039 Score=64.52 Aligned_cols=157 Identities=14% Similarity=-0.049 Sum_probs=96.4
Q ss_pred HhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCC
Q 009362 311 IYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSK 390 (536)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (536)
.+++ .|++.. ..............+...+.|.+.||+|||+.-+...++.+++.+.--...
T Consensus 60 LY~~-yg~~~~------------qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~------ 120 (354)
T PF05631_consen 60 LYES-YGFSEH------------QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSN------ 120 (354)
T ss_pred HHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccc------
Confidence 3444 777776 344666777777777888999999999999988888777777765433322
Q ss_pred CchHHHHHHHHHHHHHHhcCccccccc-cccc----cccccccchhhhHhH-HHHHHHHHHHHHHHHhhhcccccccccc
Q 009362 391 HTNFGFMFLYALTFFFANFGPNTTTFI-VPAE----LFPARFRSTCHGISG-AFGKVGAIIGTVAFLWASHDDNKVNATG 464 (536)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~~g 464 (536)
...+.+--++.+.......+..=+ ++.| -+|++..+...+... ..+.+..+.+..+..++.+.. ..|
T Consensus 121 ---~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~----~~g 193 (354)
T PF05631_consen 121 ---YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF----GFG 193 (354)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh----CCC
Confidence 234444434444333322222211 2233 345555566666555 234445556666666665433 235
Q ss_pred cchhhHHHHHHHHHHHHHhheeecccccc
Q 009362 465 VTIALLILGGVCFMGFAITYFFTRETMGR 493 (536)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (536)
...+|.....+.+++.+++....+|..+.
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 67899998888888888877666776554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=64.44 Aligned_cols=95 Identities=11% Similarity=-0.029 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccC
Q 009362 122 LGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQ 201 (536)
Q Consensus 122 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (536)
++..++.-++.|++.+........+.+. +|++ .+..+..+.+++.+++.++--... ....+ . ..
T Consensus 106 f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~-a~~~~----~------~~ 169 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVK-ASGND----S------HG 169 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHH-HhcCC----c------cc
Confidence 4677778889999999988888888875 5543 455555666777666665543332 21110 0 00
Q ss_pred CCCchhHHHHHhhHHHHHHHHHHHcCCCCcc
Q 009362 202 ADIAWRLILMLGSIPAAFTYYWRMTMPESAR 232 (536)
Q Consensus 202 ~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~ 232 (536)
...+=...|.++.++.+++++....++..|.
T Consensus 170 ~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 170 LKKSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 1122233444556666666666666776664
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=70.16 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccc---ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcc---cchhHHHHHHHHH
Q 009362 94 RVYGLALMLMVLSSLACGFSICTT---KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKM---TRGAFIAAVFSMQ 167 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~rg~~~~~~~~~~ 167 (536)
|++.++.++..+|.++..++.... .......++++-.+.++|.|+.-|...++++|-++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888888888855543221 1112367899999999999999999999999999865 4677888899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHc
Q 009362 168 GFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMT 226 (536)
Q Consensus 168 ~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 226 (536)
++|..++..+.+++ .++.||.+.|.++++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i-------------------~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYI-------------------QQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHH-------------------HHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhh-------------------ccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999888 45779999999988888776665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.047 Score=54.35 Aligned_cols=159 Identities=9% Similarity=0.073 Sum_probs=97.3
Q ss_pred eehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHH-HHHHhhhhhcccccccchhH
Q 009362 16 YYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALL-GTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr~ 94 (536)
+..++.++..++..|+..++....- .+.+.+... ....+.+..+-....+ +..+......++++|++|.+
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt-----~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~ 90 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILR----DLKDTLVVT-----AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREK 90 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEe-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 4455666666666766666553322 233222110 2245566666554444 45666788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh--hc---ccccc--------------------hhhHHHHHHHHHhhhccCcch-hhhHhhh
Q 009362 95 VYGLALMLMVLSSLACGFS--IC---TTKQC--------------------VLGSLGFFRFLLGVGIGGDYP-LSATIMS 148 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~--~~---~~~~~--------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~ 148 (536)
++-+....+.....++++. ++ .++.. +.|...+.-++.-+-.....+ .-..+..
T Consensus 91 lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN 170 (491)
T PF03219_consen 91 LFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN 170 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666666555555442 11 10000 002222222333332222233 3478889
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 149 EFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 149 e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
|.++.+|-.|..++++.+.++|.+++..+...+.+
T Consensus 171 ~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 171 EITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888866
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0014 Score=62.74 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=99.8
Q ss_pred HHhhhhhhhHHhhhh-cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHH
Q 009362 301 FYSSNLFQSKIYHQY-IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLA 379 (536)
Q Consensus 301 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 379 (536)
+--...|+..|+.+. .|++..+.....+ -..... .++.-+....+.|.++.|++++++.+...+...+
T Consensus 19 frPsEPfl~~yL~~~~kn~T~~qv~~~i~--------Pv~tYS---yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~l 87 (412)
T PF01770_consen 19 FRPSEPFLTPYLTGPDKNFTEEQVNNEIY--------PVWTYS---YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLL 87 (412)
T ss_pred cCCCCccchHHHcCCccCCCHHHHHHhhh--------hHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 334455666666664 6777665321111 111112 2223336678999999999999998888887777
Q ss_pred hhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhccccc
Q 009362 380 IGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNK 459 (536)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~ 459 (536)
+.+... ...+-+.-++.+..... -...++++=...|+++--++.+......-+|.+++..++-.+..
T Consensus 88 ll~~~s--------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs---- 154 (412)
T PF01770_consen 88 LLFGTS--------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS---- 154 (412)
T ss_pred HHHHCc--------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 666554 34444444444433332 23444555566677777788888888777777777766655543
Q ss_pred ccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 460 VNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 460 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.++..+.....+..+...+++++.+ ++|..++
T Consensus 155 ~~~~sy~~L~~isl~~~~~a~~~~~-fLP~~~~ 186 (412)
T PF01770_consen 155 FGGVSYFQLNYISLASVSLALLIAL-FLPMPKR 186 (412)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH-HcCCCCc
Confidence 2244566666666665666666666 6666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.12 Score=50.40 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=103.9
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHH-HHHHhhhhhcccccccchh
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALL-GTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~Grr 93 (536)
++..+..+...++..++..++.. .+-.+.+.+... ...++.+.++-+..-+ +..+..++.+++.+++.|.
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~-----~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~ 92 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVT-----RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTRE 92 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEee-----cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHH
Confidence 34455666666666666666553 333444444111 3456677788887777 7788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc-----cc------------cc-c--------hhhHHHHHHHHHhhhccCcch-hhhHh
Q 009362 94 RVYGLALMLMVLSSLACGFSIC-----TT------------KQ-C--------VLGSLGFFRFLLGVGIGGDYP-LSATI 146 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~-~--------~~~~l~~~r~l~G~~~g~~~~-~~~~~ 146 (536)
+++-+.+..+....+++++.-- .+ .+ . +-|...+.-++.=+-...... .-...
T Consensus 93 ~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f 172 (509)
T COG3202 93 KVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF 172 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877777777765421 00 00 0 002222222222222222222 34567
Q ss_pred hhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 147 MSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCK 183 (536)
Q Consensus 147 i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~ 183 (536)
..|.+..+|-.|..++++.+.+++..++..+..++.+
T Consensus 173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899998999999999999999999999988888854
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.9e-05 Score=79.61 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=1.9
Q ss_pred HhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccC-
Q 009362 311 IYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWS- 389 (536)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (536)
-++..++++..+.| +.....-++.++..++..++.+|..|-+.+..+.++++++.+++.+.......
T Consensus 28 tiErRF~l~S~~~G------------~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 28 TIERRFGLSSSQSG------------LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 34555888888544 67777777888877788888888777778888899999988887765432000
Q ss_pred -----------------------------------------CCchHHHHHHHHHHHHHHhcCcccccccccccccccccc
Q 009362 390 -----------------------------------------KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFR 428 (536)
Q Consensus 390 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 428 (536)
....+.++++..++.+.+.....++..+|+-|.++++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 001123344444555666666778889999999999999
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHhhhccc---c------------cccccc-cchhhHHHHHHHHHHHHHhheeecccc
Q 009362 429 STCHGISGAFGKVGAIIGTVAFLWASHDD---N------------KVNATG-VTIALLILGGVCFMGFAITYFFTRETM 491 (536)
Q Consensus 429 ~~~~g~~~~~~~~g~~~~~~~~~~l~~~~---~------------~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (536)
+...|+..+...+|-++|-.+.+...... + +.+..| |+..|++.+.+.++..+... ..|+.-
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~-~FPk~l 253 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF-FFPKKL 253 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-cCCccC
Confidence 99999999998888888877777665321 0 011123 66677777777777766666 445443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=46.96 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHH
Q 009362 292 TSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFF 371 (536)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 371 (536)
..++..........-|.|.++++ .|+++. ..+....+..+..+++.++.|.++||+++++.......
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~------------~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPS------------QIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhh-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34444555666777888999998 999988 45578888888999999999999999999887766544
Q ss_pred H
Q 009362 372 F 372 (536)
Q Consensus 372 ~ 372 (536)
.
T Consensus 74 ~ 74 (77)
T PF12832_consen 74 F 74 (77)
T ss_pred H
Confidence 3
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0057 Score=50.36 Aligned_cols=108 Identities=11% Similarity=-0.018 Sum_probs=76.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccc
Q 009362 338 QAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417 (536)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (536)
...+......+..++.+.+.+++|.|+.+.++.+...+-........ .+.++....+.+++....+...-.
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~---------~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN---------SYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHhhhhHHhhHhhhH
Confidence 33444445566667889999999999999999888776554443222 344455555555555555566667
Q ss_pred cccccccccccchhhhHhHHHHHHHHHHHHHHHHhhh
Q 009362 418 VPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS 454 (536)
Q Consensus 418 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~ 454 (536)
++.+...++.+++..|+...+.+.+.++|..+.-.+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888899999999999999888888887665553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0059 Score=53.93 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHh-hchhHHHHHhHHHHHHHHHHhhcccc--cccCCCchHHHHHHHHHHHHHHhcCcccc
Q 009362 338 QAIFAICSTIPGYFVTVFFIDR-IGRVAIQALGFFFMGVIYLAIGVPYS--YKWSKHTNFGFMFLYALTFFFANFGPNTT 414 (536)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (536)
...+...+..+|.+..|...+. +.||+.+. ..+.+++.+.++..... .+...........++.++.+.+..+..++
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~-~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIH-FIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344444555665666666654 45555433 22222222211111111 01112223455666677777777888787
Q ss_pred ccccccccc--cccccchhhhHhHHHHHHHHHHHHHHHH
Q 009362 415 TFIVPAELF--PARFRSTCHGISGAFGKVGAIIGTVAFL 451 (536)
Q Consensus 415 ~~~~~~~~~--p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 451 (536)
.....-|.= .|+..|...|+.-.++++.-.+.-.+..
T Consensus 225 iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S 263 (267)
T PF07672_consen 225 ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS 263 (267)
T ss_pred HhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 766655542 3455666677666666655544444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=59.01 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHH-HHHHHH-HHHHHhhhhhcccccchhhHHHHHHHHHhhhc
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGL-ALMLMV-LSSLACGFSICTTKQCVLGSLGFFRFLLGVGI 136 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 136 (536)
|-+..+.+.+.+++.+|.++|+.+++++.++.-|+....- ...+.+ ++..+......+ .......++..-++.|+..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAF-QGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999988744333332211 111111 111111111111 0000123344556778888
Q ss_pred cCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 137 GGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 137 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
|+..|....+..+... ++-+...|-......+|.++|.++.++++
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 8888887777765432 23467788888899999999999988775
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=63.31 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=115.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhh-hcccc----cchhhHHHHHHHHHh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFS-ICTTK----QCVLGSLGFFRFLLG 133 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~l~~~r~l~G 133 (536)
|.++...|.+..+..++..++..+..+..-+..-|+++..+.++.++..+.-... ...+. +.. +-.+.--++..
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~ 329 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEE 329 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHH
Confidence 5899999999999999999999999888888888999998888887776643321 11000 000 22222345555
Q ss_pred hhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHh
Q 009362 134 VGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLG 213 (536)
Q Consensus 134 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~ 213 (536)
+..+..+-....+++|.+|+..-|...++.....++|..++..++..+.+.++... .+..+-.+..+++
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~-----------~~f~~l~~lili~ 398 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR-----------DDFSNLWLLILIC 398 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-----------ccccchHHHHHHH
Confidence 55566677778899999999999999999999999999999999999988876410 1122233444455
Q ss_pred hHHHHHHHHHHHcCCCCcc
Q 009362 214 SIPAAFTYYWRMTMPESAR 232 (536)
Q Consensus 214 ~~~~~~~~~~~~~~~esp~ 232 (536)
.+..++.+.+..++|+..+
T Consensus 399 ~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 399 SVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHcCCCch
Confidence 5666555666667777543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.027 Score=55.66 Aligned_cols=105 Identities=7% Similarity=0.007 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccc---ccCCC---------------------chHHHHHHHHHHHH
Q 009362 350 YFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSY---KWSKH---------------------TNFGFMFLYALTFF 405 (536)
Q Consensus 350 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~ 405 (536)
.++-+++++|++|++++..........++++++.... ..+++ ..|.....+...-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5678999999999998766555555554444443110 00000 01122222222222
Q ss_pred HHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhh
Q 009362 406 FANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWAS 454 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~ 454 (536)
.......-..|.+++|.+..++..+-.++....+++|.++++.+..++.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222377899999999999999999999999999999999888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=60.76 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=117.0
Q ss_pred HHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccc---
Q 009362 310 KIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSY--- 386 (536)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~--- 386 (536)
+-+++.++++..+.| ++....-++..+...+..+..-|..|-+.+-+|.++++++.++..+....
T Consensus 121 ttiErRF~i~Ss~sG------------~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~ 188 (735)
T KOG3626|consen 121 TTIERRFKISSSQSG------------LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGP 188 (735)
T ss_pred hhhhhhcCCCCCcce------------eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCc
Confidence 344556888888655 33333444555555566677778878788888999998888888776321
Q ss_pred --------------c---------------------------cCCCchHHHHHHHHHHHHHHhcCccccccccccccccc
Q 009362 387 --------------K---------------------------WSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPA 425 (536)
Q Consensus 387 --------------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 425 (536)
. ......+.++++..++.+.+....++...+|+-|-..+
T Consensus 189 y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~ 268 (735)
T KOG3626|consen 189 YEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK 268 (735)
T ss_pred chhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc
Confidence 0 00011344555666777777777889999999999999
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHhhhcccccc------------ccc-ccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 426 RFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKV------------NAT-GVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 426 ~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~------------~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
+......|+..++.-+|=++|-.+++.+....-.. ... .|+.-|++.+++.++..+..+ +.|+...
T Consensus 269 ~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f-~fPk~lp 347 (735)
T KOG3626|consen 269 KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF-FFPKELP 347 (735)
T ss_pred cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hCcccCc
Confidence 98999999999999888888888877765332111 112 256678888888888888777 6676555
Q ss_pred cc
Q 009362 493 RS 494 (536)
Q Consensus 493 ~~ 494 (536)
++
T Consensus 348 ~~ 349 (735)
T KOG3626|consen 348 KS 349 (735)
T ss_pred cc
Confidence 43
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.046 Score=53.46 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhhhhccccc---ccchhHHHHHHHHHHHHHHHHhhhhhccccc------------chhhHHHHHHH
Q 009362 66 SPMLALALLGTVIGQLVFGRLGD---LIGRRRVYGLALMLMVLSSLACGFSICTTKQ------------CVLGSLGFFRF 130 (536)
Q Consensus 66 g~~~s~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~ 130 (536)
+.-.-...+|..+++.+.+.+.+ ++||++.+.++..+..++.++..+....+.+ .+....++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 34444445556666666666664 6799999999999988888877665443221 12367788889
Q ss_pred HHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 131 LLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 131 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
+.|++-+......+.++.+.. +++|..+.++...-..++..++.......
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999 58888999998888888877766555444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.046 Score=53.43 Aligned_cols=153 Identities=18% Similarity=0.082 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHH
Q 009362 21 AIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLAL 100 (536)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~ 100 (536)
.++...++..+.++..-..+.....+...- |+++..+|..-+...+....+.+...++.+|+|..|.=.++.
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~--------G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l 330 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ--------GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 344555555555555444555555555565 999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHhhh---hhccc-ccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHH
Q 009362 101 MLMVLSSLACGF---SICTT-KQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASST 176 (536)
Q Consensus 101 ~~~~~~~~~~~~---~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~ 176 (536)
....++..++.. .+.-. ...+...++.+-.+.=+|.=+...+..-++.|..|+++||...|......++-.++...
T Consensus 331 ~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 331 WWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 665544443332 22210 01123445555555555555667788899999999999999999999999988888877
Q ss_pred HHHHH
Q 009362 177 VTMAV 181 (536)
Q Consensus 177 ~~~~l 181 (536)
++..+
T Consensus 411 ~~ii~ 415 (432)
T PF06963_consen 411 LTIIF 415 (432)
T ss_pred HHhcc
Confidence 76654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.035 Score=50.18 Aligned_cols=133 Identities=16% Similarity=0.064 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHhhhhhccccccc--chhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchh
Q 009362 65 VSPMLALALLGTVIGQLVFGRLGDLI--GRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPL 142 (536)
Q Consensus 65 ~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 142 (536)
.|.+.-+-.+-..+..+.+..+.||+ |.|.. +..++.+.+..+.+++.+. ++-+.+-.+..++.|.....
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~s~------~~sL~GV~~aSissGlGEiT 135 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSNSV------PMSLLGVVFASISSGLGEIT 135 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEeccch------hHHHhhhhhhhhcCCcceee
Confidence 34445555556666667777788876 55544 4455667777888888886 88888888888888877665
Q ss_pred hhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH
Q 009362 143 SATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY 222 (536)
Q Consensus 143 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 222 (536)
-..+-+.+ + ....+-+..+.+.+.++|..--.++-+. .+.+-|...++...+.++...
T Consensus 136 FL~lss~Y-~----~~~i~~WSSGTGgAGliGa~SYa~lT~~-----------------~~~spk~Tlli~l~lP~lfa~ 193 (409)
T KOG3880|consen 136 FLALSSRY-P----SIVIAGWSSGTGGAGLIGASSYAFLTSW-----------------ANLSPKSTLLIMLFLPALFAF 193 (409)
T ss_pred hhhhhccC-C----CceeccccCCCCcchhhhhhHHHHHhhh-----------------cCCChhhHHHHHHHHHHHHHH
Confidence 55544432 2 2233444444444455555444444221 234566777775554444444
Q ss_pred HHHcC
Q 009362 223 WRMTM 227 (536)
Q Consensus 223 ~~~~~ 227 (536)
..+++
T Consensus 194 ~yf~l 198 (409)
T KOG3880|consen 194 AYFFL 198 (409)
T ss_pred HHHhe
Confidence 44443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.00079 Score=63.30 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=3.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhhccccc-c---cC-CCchHHHHHHHHHHHHHHhcC
Q 009362 337 HQAIFAICSTIPGYFVTVFFIDRI-GRVAIQALGFFFMGVIYLAIGVPYSY-K---WS-KHTNFGFMFLYALTFFFANFG 410 (536)
Q Consensus 337 ~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~ 410 (536)
.......++..+|+.+..+..-+. .+|++. +..+.=.+..-++...... . .+ .-.+-+..++..+..++.++-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 456677788899998877643221 234433 2222222211111111110 0 00 001123334445555566666
Q ss_pred ccccccccccccccccccchhhhHhHHHHHHHHHHHHHHH
Q 009362 411 PNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 450 (536)
..+....+..+..++++|..+-.+...+-.+|-.+|..+.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888889999988888887777777777766666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.041 Score=52.85 Aligned_cols=114 Identities=21% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH-----HHHHHhhhhhcccccchhhHHHHHHHHHh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV-----LSSLACGFSICTTKQCVLGSLGFFRFLLG 133 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 133 (536)
.-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+-.. +.....-+.++. |..++.-+..|
T Consensus 277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi------~ivf~lif~eG 346 (402)
T PF02487_consen 277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSI------WIVFVLIFYEG 346 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHH
Confidence 4446778888889998888875543332 33 444333332222 122222334554 88888999999
Q ss_pred hhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 134 VGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 134 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
+..|..+......+.|-.++++|...++....+.++|.+++.+++.++-
T Consensus 347 LlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 347 LLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998773
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.37 Score=44.29 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=69.1
Q ss_pred HHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc-
Q 009362 75 GTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK- 153 (536)
Q Consensus 75 ~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~- 153 (536)
..+..+.+.+.+..++|-|.++.++.......-..- +-+. +..++-.-.+.|++.+..+..--+|++++...
T Consensus 70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr------~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPR------YETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchh------HHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 334445555588899999999998887775433221 1222 37888899999999999998888888876643
Q ss_pred -ccc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009362 154 -MTR---------GAFIAAVFSMQGFGILASSTVTMAVCKIF 185 (536)
Q Consensus 154 -~~r---------g~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 185 (536)
+.| .+..+.+.+...-+...|..++..+....
T Consensus 143 a~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~ 184 (390)
T KOG3097|consen 143 ANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLF 184 (390)
T ss_pred HHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 45566666666656666655555554433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.11 Score=48.54 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccc
Q 009362 336 RHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTT 415 (536)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (536)
........+...++.++.|.+.||.|||+.+..+......+.+...+... .......+.....+.......+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~ 115 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGGGLLPVA 115 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhHHHHHHH
Confidence 34555555666666689999999999997777766543333222222221 112333333332334443455777
Q ss_pred cccccccccc-cccchhhhHhHH-HHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHH
Q 009362 416 FIVPAELFPA-RFRSTCHGISGA-FGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVC 476 (536)
Q Consensus 416 ~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 476 (536)
.++..|..|. +.|+...+.... ...++..+++.+.+.+... ...+|+..+.......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 116 SALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA----LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHH
Confidence 8888999887 568888888888 5777888888777777543 2345665555444444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.12 Score=52.43 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.8
Q ss_pred cchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 009362 428 RSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAI 482 (536)
Q Consensus 428 ~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 482 (536)
.+...|-....+.+|+++|.++.+++. ....|...+.++.+.+.+++.++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vL-----lp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLL-----LPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHH-----HHhcchHHHHHHHHHHHHHHHHH
Confidence 466778888999999999999988875 33456555655655555444433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0094 Score=57.01 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh----hch
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR----IGR 362 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr 362 (536)
++.+....+..-+.+-.-..+.+.|+++ +|.+..- ........-+.+++-.++.|..+|| +||
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------------ccccccccccccceeccccccccccccccccc
Confidence 4445555555566667778889999998 9998873 3355555666677777888999997 677
Q ss_pred hHHHH-HhHHHHHHHHHHhhcccccccC-----CC-chHHHHHHHHHHHHH---HhcCccccccccccccccccccch-h
Q 009362 363 VAIQA-LGFFFMGVIYLAIGVPYSYKWS-----KH-TNFGFMFLYALTFFF---ANFGPNTTTFIVPAELFPARFRST-C 431 (536)
Q Consensus 363 r~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~-~ 431 (536)
||..+ .+.....++++++++....... .. .....+++..+.... .+-......-++..|+..++.+.+ +
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~A 180 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRA 180 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhcc
Confidence 76554 5556666666666665442211 11 122233333222222 221223455678888887766666 8
Q ss_pred hhHhHHHHHHHHHHHHHHHHhh
Q 009362 432 HGISGAFGKVGAIIGTVAFLWA 453 (536)
Q Consensus 432 ~g~~~~~~~~g~~~~~~~~~~l 453 (536)
++....+..+|+.+|-.+.++.
T Consensus 181 ns~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 181 NSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred chhHHHHHHhcceeeeeccccc
Confidence 8888888888888876666543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.042 Score=53.45 Aligned_cols=117 Identities=8% Similarity=-0.028 Sum_probs=78.1
Q ss_pred HHHHHhHHHHHHHHHHhhcccccccC-CCchHHHHHHHHHHHHHHhcCcccccccccccccccc---ccchhhhHhHHHH
Q 009362 364 AIQALGFFFMGVIYLAIGVPYSYKWS-KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPAR---FRSTCHGISGAFG 439 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 439 (536)
+.+.++.++..++.+++.+....... .......+.+...+...+.++.=|...++..|.++++ .|.+.........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45677777777777774443331111 1112233444444456666667788888889998865 4566677778889
Q ss_pred HHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 440 KVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 440 ~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
++|+.+++.+.+++. ++.||...|.+.++..+++.+..+.-
T Consensus 82 n~G~~~~~~~~~~i~------~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ------QNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHH------HCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhc------cccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999994 46789999999998888888877633
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.58 Score=46.28 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccc
Q 009362 338 QAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFI 417 (536)
Q Consensus 338 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (536)
......+..++..+....+..|+..|.-+..+.++..+..++.........+.....+...+..+..++......+..+.
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g 129 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG 129 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence 33344455555555666666676653333334333333322222222211111122333334444444444445556666
Q ss_pred ccccccccccc
Q 009362 418 VPAELFPARFR 428 (536)
Q Consensus 418 ~~~~~~p~~~~ 428 (536)
+++ .+|++..
T Consensus 130 la~-~fp~~~~ 139 (437)
T TIGR00939 130 LAG-VFPSTYS 139 (437)
T ss_pred hcc-cCCHHHH
Confidence 654 5665543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.15 Score=36.76 Aligned_cols=74 Identities=9% Similarity=-0.042 Sum_probs=60.7
Q ss_pred HHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHH
Q 009362 299 IVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYL 378 (536)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 378 (536)
.+-+.+...+|...++ .+++.. .++.......++.++|.+...++.++.++++.+..+.+...+..+
T Consensus 6 igRFayTplLP~M~~~-~~ls~~------------~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQAD-GGLSLS------------QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTA 72 (85)
T ss_pred hHHHHHHhHhHHHHHh-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3445666778888777 888877 566888888999999999999999998888899999999998888
Q ss_pred Hhhcccc
Q 009362 379 AIGVPYS 385 (536)
Q Consensus 379 ~~~~~~~ 385 (536)
.+++...
T Consensus 73 ~ma~~~~ 79 (85)
T PF06779_consen 73 AMALTHS 79 (85)
T ss_pred HHHHHhc
Confidence 8887665
|
Note that many members are hypothetical proteins. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.16 Score=50.64 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccc---cccCCC---------------------chHHHHHHHH
Q 009362 346 TIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYS---YKWSKH---------------------TNFGFMFLYA 401 (536)
Q Consensus 346 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~ 401 (536)
.++...+-.+++++++|.++..+........+.++++... ...+++ ..|.....+.
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 3444556789999999998776555444444444433211 000000 0111111122
Q ss_pred HHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhc
Q 009362 402 LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASH 455 (536)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~ 455 (536)
..-..+.....-..|.+++|.++.++..+..++....+++|.++++.+..++.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223568999999999999999999999999999999988888765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.7 Score=43.60 Aligned_cols=151 Identities=12% Similarity=0.062 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----
Q 009362 283 HGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID---- 358 (536)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d---- 358 (536)
.++.+..+.+.+.......- ....+|.+++. .|.+-.+.+ ...+..-...+ .+++..++|
T Consensus 29 d~~~illLl~LYllQGiP~G-L~~~iP~lL~a-k~vSyt~~a---------~fS~ay~P~sL-----KllWaPiVDs~y~ 92 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLG-LIGAIPLLLQA-KGVSYTSQA---------IFSFAYWPFSL-----KLLWAPIVDSVYS 92 (510)
T ss_pred hhhhHHHHHHHHHHcCCchh-HhhhhHHHhcC-CCcchhhhh---------hhhhhhhHHHH-----HHHHHhhhHHHHH
Confidence 33456666666665554443 33378888875 555544322 11111111111 234555666
Q ss_pred -hhchhHHHHH-hHHHHHHHHHHhhcccccccC----CCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhh
Q 009362 359 -RIGRVAIQAL-GFFFMGVIYLAIGVPYSYKWS----KHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCH 432 (536)
Q Consensus 359 -~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 432 (536)
|+|||+..++ +..+.+..+..+......... .++.......+.++.+.+ ..---....++..+..++..|-+.
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla-AtQDIAVDgwALtmLs~e~lgyaS 171 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA-ATQDIAVDGWALTMLSRENLGYAS 171 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH-hhhhhhhhHHHHHhcCHhhcCchh
Confidence 9999986543 333334444444433321111 111111111112222211 111122233444556667677666
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 009362 433 GISGAFGKVGAIIGTVAF 450 (536)
Q Consensus 433 g~~~~~~~~g~~~~~~~~ 450 (536)
-......+.|.+++..++
T Consensus 172 T~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 172 TCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHHhhhHHhhccee
Confidence 665666666666665544
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=3 Score=42.76 Aligned_cols=182 Identities=10% Similarity=0.054 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-hchh
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR-IGRV 363 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr 363 (536)
+.....+..-.+-...+++...-+-.|+...++.+... +.-.............+++++++|. +||-
T Consensus 37 ~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------------aa~~v~~f~G~~~~~~l~g~~laD~f~gry 104 (571)
T KOG1237|consen 37 LSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------------AANNVNAFGGTQFLLPLLGAFLADSFLGRY 104 (571)
T ss_pred HhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 33444444445555666666566666666656665531 1122222222334455678899997 5888
Q ss_pred HHHHHhHHHHHHHHHHhhcccccc-----------c----CCCchHHHHHH--HHHHHHHHhcCccccccccccccccc-
Q 009362 364 AIQALGFFFMGVIYLAIGVPYSYK-----------W----SKHTNFGFMFL--YALTFFFANFGPNTTTFIVPAELFPA- 425 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~- 425 (536)
+.+.++.++..++++++....... + .........++ .......+..+.-|...+...|.++.
T Consensus 105 ~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~ 184 (571)
T KOG1237|consen 105 FTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDEL 184 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCcc
Confidence 888888888887766555433211 0 01111122222 22222335555667777888888872
Q ss_pred ---cccc--hhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 426 ---RFRS--TCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 426 ---~~~~--~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
+.+. .-+.......+.|..++..+..++. ++.+|...|.+..++.+++.++.+
T Consensus 185 ~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq------~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 185 DPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ------DNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred CcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh------hcccceeeccHHHHHHHHHHHHHH
Confidence 2223 4555666667778888887777774 455788888877777776666554
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.8 Score=39.47 Aligned_cols=185 Identities=8% Similarity=0.036 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
.+..++........++.+.+-.+.+..+..+.++ +............+..++....-.++.-|..+| +.
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~----------~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~-~~ 88 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN----------SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTR-VG 88 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444444444556667777777777666444333 111222334444444455555555555552222 22
Q ss_pred HHhHHHHHHHHHHhhccc-ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPY-SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAII 445 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 445 (536)
........+....+.+.. ..............+......++........+...++ +|+++....++-.+..+.+.+..
T Consensus 89 ~~l~~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~ 167 (406)
T KOG1479|consen 89 YLLSLIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLL 167 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHH
Confidence 221222222222222211 1011112223333333344444444445555566554 56565544443333333332222
Q ss_pred HHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 446 GTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 446 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
.-. .-...+ .+..+-..-|.+..++.++|.++.. .+|+
T Consensus 168 ~i~-tka~~~----~~~~sA~~yF~~s~~~~llC~i~y~-~l~~ 205 (406)
T KOG1479|consen 168 RIL-TKAAFS----DSRTSALIYFITSTVILLLCFVLYL-VLPK 205 (406)
T ss_pred HHH-HHHhcC----CCCceeehhHHHHHHHHHHHHHHHH-Hhhc
Confidence 211 111211 1123434445555555566666555 4443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.91 Score=44.48 Aligned_cols=112 Identities=7% Similarity=0.080 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhccccc--c-cC-------------C-C--------chHHHHHH
Q 009362 345 STIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSY--K-WS-------------K-H--------TNFGFMFL 399 (536)
Q Consensus 345 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~--~-~~-------------~-~--------~~~~~~~~ 399 (536)
+.++..++-.++.+++.+.++..........+++++++.... . .+ + . +.|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 445556677888899998887766555555555544443220 0 00 0 0 11222222
Q ss_pred HHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcc
Q 009362 400 YALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHD 456 (536)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~ 456 (536)
+...-.-......-..|..+.|....++..+-.++.+...+++..++..+..++.+.
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222223335677889999999999999999999999999999998888653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.16 E-value=2 Score=42.34 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=39.6
Q ss_pred ccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcc----------cccccccccchhhHHHHHHHHHHHHHhhee
Q 009362 417 IVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHD----------DNKVNATGVTIALLILGGVCFMGFAITYFF 486 (536)
Q Consensus 417 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 486 (536)
.++-.+..++.++-+.-......++|.+++-.++-.+.+. +....-.....-..+.+.+.++..++..++
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~ 220 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFF 220 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheE
Confidence 3444556677777776666666667777776666544321 000011223333445566666666666645
Q ss_pred eccc
Q 009362 487 TRET 490 (536)
Q Consensus 487 ~~~~ 490 (536)
.+|.
T Consensus 221 k~E~ 224 (544)
T PF13000_consen 221 KKEK 224 (544)
T ss_pred eecc
Confidence 5553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.93 E-value=27 Score=32.94 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=60.2
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHH-----HHHhhhhhcccccchhhHHHHHHHHHh
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLS-----SLACGFSICTTKQCVLGSLGFFRFLLG 133 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~r~l~G 133 (536)
|-+--|.+.+.+.|.....+|+...-++.|.--.-+-+..-+++..++ .+-..|+.+. ..+-+.++++-++.|
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~--~~~~~Vly~lt~vIG 116 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALES--APSRLVLYALTAVIG 116 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhcc--chHHHHHHHHHHHHH
Confidence 677789999999999999999999999888543332222222221111 1112344332 112378888999999
Q ss_pred hhccCcchhhhHhhhc
Q 009362 134 VGIGGDYPLSATIMSE 149 (536)
Q Consensus 134 ~~~g~~~~~~~~~i~e 149 (536)
.-.|.-.|..+.++..
T Consensus 117 ~LVG~EiPL~mrml~~ 132 (508)
T COG4262 117 VLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHhcchHHHHHHHHH
Confidence 9999999999988876
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.39 E-value=33 Score=30.63 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=18.5
Q ss_pred HHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHH
Q 009362 343 ICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGV 375 (536)
Q Consensus 343 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 375 (536)
.++..++.+-+-.++.|+.-|++.+.+.++..+
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~ 282 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFII 282 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEecchhHHH
Confidence 344444444455667788777766655544433
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.047 Score=47.98 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=45.8
Q ss_pred HHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccc---------cccchhHH
Q 009362 25 AGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLG---------DLIGRRRV 95 (536)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~---------dr~Grr~~ 95 (536)
-..+.+.+.....+.-..+-.+.++. ++++.....+.-+..+.-++..++.|... ||+|||+.
T Consensus 22 yGvGHmlNDitAScWFTYlllfltqi--------glsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 22 YGVGHMLNDITASCWFTYLLLFLTQI--------GLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred echhHHHhhHHHHHHHHHHHHHHHHh--------cCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 34555655555555545555556666 88888888888888888899999887654 58999886
Q ss_pred H
Q 009362 96 Y 96 (536)
Q Consensus 96 ~ 96 (536)
.
T Consensus 94 w 94 (412)
T KOG4830|consen 94 W 94 (412)
T ss_pred e
Confidence 5
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.58 E-value=16 Score=34.86 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
+.+.+++++.-...-+........+.++. +-|....+.-.-.-....++..++.|...|+..|+|++...+.+
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l 102 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLG-------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL 102 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHc-------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence 34455666665555555666666555552 43444444444444556677788889999999999998777665
Q ss_pred HHHH
Q 009362 103 MVLS 106 (536)
Q Consensus 103 ~~~~ 106 (536)
.-++
T Consensus 103 qNlS 106 (503)
T KOG2601|consen 103 QNLS 106 (503)
T ss_pred ccHH
Confidence 4333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.26 E-value=7.2 Score=35.15 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcccccccchh--HHHHHHHHHHHHHHHHhhhhh--cccccchhhHHHHHHHHHhhhccC
Q 009362 63 AVVSPMLALALLGTVIGQLVFGRLGDLIGRR--RVYGLALMLMVLSSLACGFSI--CTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 63 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
.-.|.+.+.+.+..++|+-+..++..|-..| ..+.+..++.++...+..+.. +..+ ++...=+++..+.-.+.|.
T Consensus 282 iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~k-es~~~s~i~F~~~E~cvGl 360 (454)
T KOG4332|consen 282 IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSK-ESPSESLIGFCLFEACVGL 360 (454)
T ss_pred CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCc-CCchHHHHHHHHHHHHHhh
Confidence 3458899999999999999998888765554 345555444444433332222 1111 2223335566666778899
Q ss_pred cchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAA 218 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~ 218 (536)
.+|....+-+++.|.+.|...+.++-.-.++ . +...+... ++.....+-|..|-++.+..+
T Consensus 361 fwPSimkmRsqyIPEearstimNfFRvPLni--f----vClvLynl-------------h~~~~p~~tr~mf~icS~~~~ 421 (454)
T KOG4332|consen 361 FWPSIMKMRSQYIPEEARSTIMNFFRVPLNI--F----VCLVLYNL-------------HVDAFPTTTRNMFGICSAFLF 421 (454)
T ss_pred cchHHHHHHHhhCCHHHHhhhhhheechhhH--h----hhhhheec-------------ccccCccccchhhhhhHHHHH
Confidence 9999999999999999999888776533221 1 11111110 111334567788888777766
Q ss_pred HHHH
Q 009362 219 FTYY 222 (536)
Q Consensus 219 ~~~~ 222 (536)
+..+
T Consensus 422 ~a~i 425 (454)
T KOG4332|consen 422 VASI 425 (454)
T ss_pred HHHH
Confidence 6533
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.76 E-value=4.5 Score=37.21 Aligned_cols=117 Identities=13% Similarity=0.058 Sum_probs=80.3
Q ss_pred CCCh-hhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhc
Q 009362 59 QIPN-AVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGI 136 (536)
Q Consensus 59 ~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 136 (536)
.++. .|.-|....|.+|..+..--.-..-=++ ---.++..-.+++.+...+..+.+++ +..++.-+.-|+-.
T Consensus 283 sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi------~ivf~lI~~EGLlG 356 (409)
T KOG3880|consen 283 SLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSI------WIVFALILFEGLLG 356 (409)
T ss_pred ccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHhhcC
Confidence 4443 4577888888777554432221111110 00112233344455555666777775 88888889999998
Q ss_pred cCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 137 GGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAV 181 (536)
Q Consensus 137 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l 181 (536)
|..++...--+.+-.++++|-.+++....+-++|..++.+++..+
T Consensus 357 GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 357 GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 989988888888878889999999999999999999998888665
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.09 E-value=42 Score=32.17 Aligned_cols=49 Identities=2% Similarity=-0.063 Sum_probs=28.9
Q ss_pred cccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHH
Q 009362 424 PARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFM 478 (536)
Q Consensus 424 p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 478 (536)
++.......+.....-.....+.|.+.|.+.+.. +.+..-.++++-..+
T Consensus 169 s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv------sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 169 SPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV------SLRASAGTFAAWALV 217 (503)
T ss_pred CHHHHhhcchhhhhhhhhhhchhhhhhcccceee------chhhhhhhhHHHHHH
Confidence 3333344446666666677889999999986543 344444444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 63/420 (15%), Positives = 123/420 (29%), Gaps = 72/420 (17%)
Query: 77 VIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGI 136
+ + G + D R L+L L GF T + + FL G
Sbjct: 76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQ 133
Query: 137 GGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVN 196
G +P M + ++ RG ++ G + + F
Sbjct: 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN---------- 183
Query: 197 KRQHQADIAWRLILML-GSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVS 255
W L + + M ++ + L E+ +
Sbjct: 184 --------DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------EEYKNDY 226
Query: 256 ISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSN------LFQS 309
E+ + Q + + L + L+ A + + V ++ Y L +
Sbjct: 227 PDDYNEKAEQELTAKQIFM--QYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKEV 282
Query: 310 KIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369
K +S++ ++ IPG + + D++ R A G
Sbjct: 283 K---------HFALDKSSW--------AYFLYEYAG-IPGTLLCGWMSDKVFRGNRGATG 324
Query: 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRS 429
FFM ++ +A Y + N + + F +GP + EL P +
Sbjct: 325 VFFMTLVTIAT---IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 381
Query: 430 TCHGISGAFGKVGAIIGT---VAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFF 486
T G +G FG +G + V + V+ G +++ G + +
Sbjct: 382 TAAGFTGLFGYLGGSVAASAIVGYT--------VDFFGWDGGFMVMIGGSILAVILLIVV 433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 55 ADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI 114
A + V ++ LL + QL +G + D +GRR V + + + +L++L +
Sbjct: 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT- 85
Query: 115 CTTKQCVLGSLGFFRFLLGVGIG 137
++ L L + G+G G
Sbjct: 86 -SS----LTVLIAASAMQGMGTG 103
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 54/378 (14%), Positives = 94/378 (24%), Gaps = 105/378 (27%)
Query: 9 LDSAKTQYYHF-KAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSP 67
L + F + ++ P M Y + DR N V +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM---TRMYIEQRDRLYNDNQVFAK 128
Query: 68 M----------LALALLGTVIGQLVFGRLGDLIGRRRVYGLA------LMLMVLSSLAC- 110
L ALL +L R + + G+ + L V S
Sbjct: 129 YNVSRLQPYLKLRQALL-----EL---RPAKNVL---IDGVLGSGKTWVALDVCLSYKVQ 177
Query: 111 ---GFSI-------CTTKQCVLGSLG--FFRFLLGVGIGGDYPLSATIMSEFANKMTRGA 158
F I C + + VL L ++ D+ + + R
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 159 FIAAVFSMQGFGIL---ASSTVTMAV---CKIFEATTTRDNDVNKRQHQADIAWRLILML 212
+ + +L ++ A CKI TTR V D
Sbjct: 238 LKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQV------TD--------- 279
Query: 213 GSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQY 272
+ AA T + + L V + K LD LP
Sbjct: 280 -FLSAATTTHISLDHHSM----TLTPDEVKSL---LLKYLDCRPQD------LPRE---- 321
Query: 273 PLISKRFLRRHGRDLFACATSWLLVDIV--FYSSNLFQSKIYHQYIDGNGHDQTRSAFEE 330
T+ + I+ L ++++ + +
Sbjct: 322 ----------------VLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLN 364
Query: 331 AFKVARHQAIFAICSTIP 348
+ A ++ +F S P
Sbjct: 365 VLEPAEYRKMFDRLSVFP 382
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.57 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.5 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.42 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.28 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=394.40 Aligned_cols=458 Identities=18% Similarity=0.227 Sum_probs=340.2
Q ss_pred cceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchh
Q 009362 14 TQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRR 93 (536)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 93 (536)
.+++.|.+.++.+++.++.++|...++..+|.+.+++..+.+...+.+..+.|++.+++.+|.++|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34566777777889999999999999999999999884433333345667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh------------------hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCccc
Q 009362 94 RVYGLALMLMVLSSLACGF------------------SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMT 155 (536)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 155 (536)
++++++.+++.++++++++ ++++ ++++++|+++|++.|+..+..+.+++|++|+++
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~------~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~ 159 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYV------PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCH------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh
Confidence 9999999999999999984 5665 999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhh
Q 009362 156 RGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTA 235 (536)
Q Consensus 156 rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~ 235 (536)
|++..++.+.+..+|.++++.++..+....+. ......+||+.+.+..++.++.++..+++||||+|+.
T Consensus 160 rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~ 228 (491)
T 4gc0_A 160 RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA-----------SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM 228 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-----------TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHH
T ss_pred hhhhHHhhhhhhhhhhhhhhhcchhhcccccc-----------ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHH
Confidence 99999999999999999999998877543221 0123467999999988888888888899999999984
Q ss_pred hhhhcHHHHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh
Q 009362 236 LVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQY 315 (536)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (536)
.+++.+++.+.+++..+.+..+.+..+..+......+...+.......+.........+......+....+.+.+.+.
T Consensus 229 -~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (491)
T 4gc0_A 229 -SRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT- 306 (491)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred -HcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-
Confidence 455566666655554433321111100000000000000011111122233344444444555566667777777666
Q ss_pred cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHH
Q 009362 316 IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFG 395 (536)
Q Consensus 316 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (536)
.+.+.. ..........+..+++.++++++.||+|||+.+..+...+.++++.++..... ....+.
T Consensus 307 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 371 (491)
T 4gc0_A 307 LGASTD------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIV 371 (491)
T ss_dssp SSCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHH
T ss_pred cCCCcc------------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHH
Confidence 554433 33345556667788888999999999999999999988888887776654431 112333
Q ss_pred HHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHH
Q 009362 396 FMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGV 475 (536)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 475 (536)
.+....++...+..+..++.+.+.+|++|++.|++++|+.+..+++++++++.+.+.+.+........+...+|++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 372 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 44444455556666777888999999999999999999999999999999999988775432222344667789999999
Q ss_pred HHHHHHHhheeeccccccchhhcccccCch
Q 009362 476 CFMGFAITYFFTRETMGRSLEENEKEDDSD 505 (536)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (536)
++++.++.++++||||+|++||+++..+++
T Consensus 452 ~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 999999998899999999999998876644
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=314.88 Aligned_cols=400 Identities=13% Similarity=0.139 Sum_probs=303.2
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
++.+|..+..++++.+..+++...+++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG---------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 345677788888889999999999999999887664 46778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh----hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLACGF----SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFG 170 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 170 (536)
+++++.++.+++.+++++ ++++ +.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSI------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSS------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccH------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999999999999 8887 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcccccccCCCCc-hhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhH
Q 009362 171 ILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIA-WRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDM 248 (536)
Q Consensus 171 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~ 248 (536)
.++++.+++.+.+ ..+ ||+.|++.+++.++. ++..+++||+|+.... ++.++..+..
T Consensus 168 ~~~g~~~~~~l~~-------------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (451)
T 1pw4_A 168 GGIPPLLFLLGMA-------------------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL--PPIEEYKNDY 226 (451)
T ss_dssp HTSHHHHHHHHHH-------------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC--CSCTTTCCC-
T ss_pred HHHHHHHHHHHHH-------------------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC--CChhhhcccc
Confidence 9999999998753 345 999999988777664 4455678998864211 1100000000
Q ss_pred HHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhh
Q 009362 249 EKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAF 328 (536)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 328 (536)
+.+...+.+++....+...+... +.+.++...+..++.....+....+.|.++++..|+++.
T Consensus 227 ---------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------- 288 (451)
T 1pw4_A 227 ---------PDDYNEKAEQELTAKQIFMQYVL--PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD------- 288 (451)
T ss_dssp ---------------------CCTHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-------
T ss_pred ---------cccchhhhhcccccccchHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------
Confidence 00000000001111111111111 224566677777777788888999999999887787765
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh--chhHHHHHhHHHHH-HHHHHhhcccccccCCCchHHHHHHHHHHHH
Q 009362 329 EEAFKVARHQAIFAICSTIPGYFVTVFFIDRI--GRVAIQALGFFFMG-VIYLAIGVPYSYKWSKHTNFGFMFLYALTFF 405 (536)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (536)
..+.......++.+++.++.+++.||+ +||+.+..+..+.. ++++++..... ...+...+..+..+
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 289 -----KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA------GNPTVDMICMIVIG 357 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT------TCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHH
Confidence 445677777888999999999999999 99998887777666 55555444321 12333333333444
Q ss_pred HHhcCccccccccccccccccccchhhhHhHHHHHH-HHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 406 FANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV-GAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
++..+..+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+ ..|+...|++.+++++++.++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------FFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHHH
Confidence 444444566678889999999999999999999999 99999999999955 45788899998888888877766
Q ss_pred e
Q 009362 485 F 485 (536)
Q Consensus 485 ~ 485 (536)
+
T Consensus 432 ~ 432 (451)
T 1pw4_A 432 V 432 (451)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=301.07 Aligned_cols=396 Identities=10% Similarity=-0.009 Sum_probs=292.1
Q ss_pred ceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhH
Q 009362 15 QYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRR 94 (536)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 94 (536)
+++++..+..+++..+..+++....++..|.+.+++ |++..+.|++.+++.++..++++++|+++||+|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 92 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 445667777778888889999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh---hhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHH
Q 009362 95 VYGLALMLMVLSSLAC---GFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGI 171 (536)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~ 171 (536)
+++++.++.+++.+++ ++++++ +.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIMNY------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccH------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 888887 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhhhcccccCCcccccccC------CCCchhHHHHHhhHHHHHHHHHHHc--CCCCcchhhhhhhcHH
Q 009362 172 LASSTVTMAVC-KIFEATTTRDNDVNKRQHQ------ADIAWRLILMLGSIPAAFTYYWRMT--MPESARYTALVEQNVM 242 (536)
Q Consensus 172 ~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~~------~~~~w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~ 242 (536)
++++.+++.+. ...+.....+....+.... ...+||+.|++.++..++..+..++ .||+++.. +++++
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~ 243 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK 243 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCSS
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccccc
Confidence 99999999985 2111000000000000000 0011999998866665554443333 45554320 00000
Q ss_pred HHHHhHHHHhccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH-hhhhcCCCCC
Q 009362 243 QAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKI-YHQYIDGNGH 321 (536)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 321 (536)
++...+..++ .. +.+.++...+..++.....+....+.|.| +++.+|+++.
T Consensus 244 -------------------------~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 295 (438)
T 3o7q_A 244 -------------------------QGSFSASLSR-LA--RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295 (438)
T ss_dssp -------------------------TTSHHHHHHH-HT--TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred -------------------------ccchhhhHHH-HH--hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh
Confidence 0000001111 11 12345556666666777778888999999 8886688766
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHH
Q 009362 322 DQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYA 401 (536)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (536)
..+.......++.+++.++.+++.||++||+.+..+.++..++.+++..... .......
T Consensus 296 ------------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~- 354 (438)
T 3o7q_A 296 ------------FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------HVGLIAL- 354 (438)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHH-
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC--------cHHHHHH-
Confidence 4556677778888999999999999999999999998888887776665544 2222222
Q ss_pred HHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHH
Q 009362 402 LTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGF 480 (536)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 480 (536)
+..+++.....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.|++.+ ..| ++..|++.+++.++..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD------AAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH------HHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHH
Confidence 3334444555688888889999977 888888877 778999999999999965 445 7788887666655554
Q ss_pred HHhh
Q 009362 481 AITY 484 (536)
Q Consensus 481 ~~~~ 484 (536)
++.+
T Consensus 427 ~~~~ 430 (438)
T 3o7q_A 427 IFAR 430 (438)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=282.00 Aligned_cols=383 Identities=11% Similarity=0.047 Sum_probs=257.3
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccc-cchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhcc
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDL-IGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
|.+..+.|++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++++ +.++++|++.|++.+
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA------SALFGSIILIIIGTG 123 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST------THHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999987 999999999999999
Q ss_pred CcchhhhHhhhccCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhH
Q 009362 138 GDYPLSATIMSEFANKMT--RGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSI 215 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 215 (536)
...+...+++.|++|+++ |+.++++.+.+.++|..++|.+++.+. +..|||+.|++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-------------------~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-------------------EAAGYHVAFSLAAI 184 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHSCHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-------------------hhhhHHHHHHHHHH
Confidence 999999999999999988 777888899999999999999999985 34579999999777
Q ss_pred HHHHHHHHHHcC-CCCcch---hhhhhhcHHHHHHhHHH---------------Hhcccccccccc--------------
Q 009362 216 PAAFTYYWRMTM-PESARY---TALVEQNVMQAAKDMEK---------------VLDVSISQIAEE-------------- 262 (536)
Q Consensus 216 ~~~~~~~~~~~~-~esp~~---l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~-------------- 262 (536)
..++..+..++. ++..+. ...++.+.++..+..+. ..... .+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW-NSLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC-cccccchhhhhHHHHHHHHH
Confidence 666554433322 221100 00111112222221111 00000 000000
Q ss_pred ---CCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHH
Q 009362 263 ---YPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQA 339 (536)
Q Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 339 (536)
...++++ .....++.....+......+.....+.....+.+.+..+..+.+..+.+ ...
T Consensus 264 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 325 (491)
T 4aps_A 264 YFAWMISSVK------VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS------------WFQ 325 (491)
T ss_dssp HHHHHC------------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG------------GGT
T ss_pred HHHHHhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH------------HHh
Confidence 0000000 0000111112233444444555566667777888888886777654333 334
Q ss_pred HHHHHhhhhhHHHHHHHHHhhchhHHHH-----HhHHHHHHHHHHhhccccccc-CCCchHHHHHHHHHHHHHHhcCccc
Q 009362 340 IFAICSTIPGYFVTVFFIDRIGRVAIQA-----LGFFFMGVIYLAIGVPYSYKW-SKHTNFGFMFLYALTFFFANFGPNT 413 (536)
Q Consensus 340 ~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (536)
....++.+++.++.+++.||++||+... .+..+.+++++++........ ......+...+..++.+++.....+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 4455666677788999999999986544 666666666665554321000 0111233344444455555555567
Q ss_pred cccccccccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 414 TTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 414 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
..+.++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...|.+++++++++.++.+++.++.++
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988753 256678888888888887777755555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=275.69 Aligned_cols=357 Identities=13% Similarity=0.067 Sum_probs=264.2
Q ss_pred HHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHH
Q 009362 23 IIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALML 102 (536)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 102 (536)
..+++..+..+++...+.+..|.+.+++ |.+..+.|++.+++.++..+++++.|+++||+|||+++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL--------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS--------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4456677778888888999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 103 MVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
.+++.++.++++++ +.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.
T Consensus 75 ~~~~~~~~~~~~~~------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 75 FMLATLVAVTTSSL------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccH------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999987 999999999999999999999999999999999999999999999999999999999883
Q ss_pred HhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHHHH-HHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc
Q 009362 183 KIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYY-WRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE 261 (536)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (536)
+..+||+.|++.++..++..+ ..+++||+++.. +++
T Consensus 149 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------- 185 (375)
T 2gfp_A 149 -------------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR--------------------- 185 (375)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC---------------------
T ss_pred -------------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc---------------------
Confidence 445799999988777766554 445678876531 110
Q ss_pred cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHH
Q 009362 262 EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
.+.++...+.++ .+.++...+..++.....+....+.|.++++..|.++. ..+.....
T Consensus 186 ---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~g~~~~~ 243 (375)
T 2gfp_A 186 ---TRLLTSYKTLFG-------NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM------------TVSILFIL 243 (375)
T ss_dssp ---CCTTTCSTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH------------HHHHHHHT
T ss_pred ---ccHHHHHHHHhc-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------------HHHHHHHH
Confidence 000111111111 13345555556666677777888888888775555443 44566677
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHH-HHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCcccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFF-MGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPA 420 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (536)
..++.+++.++.+++.||.+++ +..+... ...+...+..... .....+...+..+..+++.....+...++..
T Consensus 244 ~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 317 (375)
T 2gfp_A 244 PIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAGMLFPLATSGAM 317 (375)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7788888888999999998873 2222222 1111111111110 0012233333333333444445678888899
Q ss_pred ccccccccchhhhHhHHHHHHHHHHHHHHHHhhhcccccccccccchhhHH
Q 009362 421 ELFPARFRSTCHGISGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLI 471 (536)
Q Consensus 421 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~ 471 (536)
|..| +.|+++.|+.+...++|..++|.+.+.+.+ ..++...+.+
T Consensus 318 ~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~~~~~~~~~ 361 (375)
T 2gfp_A 318 EPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ------TGQGSLGLLM 361 (375)
T ss_dssp THHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH------HHHHHHHHHH
T ss_pred HhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccHHHHH
Confidence 9998 889999999999999999999999998854 3355555544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=250.52 Aligned_cols=377 Identities=16% Similarity=0.075 Sum_probs=235.1
Q ss_pred cchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHH---Hhhh
Q 009362 37 FCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSL---ACGF 112 (536)
Q Consensus 37 ~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~ 112 (536)
....+.+|. +.+++ |++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. ...+
T Consensus 24 ~~~~~~~~~~l~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 24 GAYFPFFPIWLHDIN--------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHTTTHHHHHHTTT--------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 343455555 55667 99999999999999999999999999999999999999998887755321 1122
Q ss_pred hhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009362 113 SICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK--MTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTT 190 (536)
Q Consensus 113 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~~ 190 (536)
++.. ...+...+++.|++.|...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+
T Consensus 96 ~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------- 163 (417)
T 2cfq_A 96 GPLL-----QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------- 163 (417)
T ss_dssp HHHH-----HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-------
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 2211 01234456666666555444444455555443 456777788877888999999999998853
Q ss_pred cCCcccccccCCCCchhHHHHHhhHHHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccccCCCCCCCC
Q 009362 191 RDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPP 270 (536)
Q Consensus 191 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (536)
.+||+.|++.++..++..+..++.+|+++. . .+++ + .+ +.++++.
T Consensus 164 -------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~---------------~~---~~~~~~~ 208 (417)
T 2cfq_A 164 -------------INNQFVFWLGSGCALILAVLLFFAKTDAPS--S-ATVA-N---------------AV---GANHSAF 208 (417)
T ss_dssp -------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--S-SCSS-S---------------SS---SSCCCCC
T ss_pred -------------hchhHHHHHHHHHHHHHHHHHHHcCccccc--c-cccc-c---------------cc---ccccccc
Confidence 269999998777655554444444443321 0 0000 0 00 0000111
Q ss_pred ChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhH
Q 009362 271 QYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGY 350 (536)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
..+...+.. + .+.++...+..+.....++....+.|.++.+.++... ......+....+..++.+++.
T Consensus 209 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 209 SLKLALELF-R--QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE---------QGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp CHHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH---------HHTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh-c--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CChhHHHHHHHHHHHHHHHHH
Confidence 111111111 1 1223333333333333444445567777765332110 011123345556667778889
Q ss_pred HHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccch
Q 009362 351 FVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRST 430 (536)
Q Consensus 351 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 430 (536)
++.++++||+|||+.+..+..+.++.++.+..... .+.+.+...+.++......+..+.+.+|.+|++.|++
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS--------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 99999999999999998888887777666544322 2222222222222222223445678899999999999
Q ss_pred hhhHh-HHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccc
Q 009362 431 CHGIS-GAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRS 494 (536)
Q Consensus 431 ~~g~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (536)
+.++. +..+++|++++|.+.|++.+ ..|+...|.+.+++++++.++.++..||+++.+
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYE------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHH------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99994 88888999999999999854 446778888888888888877765666554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=251.74 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=128.2
Q ss_pred CChhhhHHHHHHHHHHHHHhhhhhccccccc-chhHHHHHHHHHHHHHHHHhhhhh-cccccchhhHHHHHHHHHhhhcc
Q 009362 60 IPNAVVSPMLALALLGTVIGQLVFGRLGDLI-GRRRVYGLALMLMVLSSLACGFSI-CTTKQCVLGSLGFFRFLLGVGIG 137 (536)
Q Consensus 60 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 137 (536)
++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ ++ +.++++|++.|++.+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV------QGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH------HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999 999999999999999999999998 86 899999999999999
Q ss_pred CcchhhhHhhhccCCcccchhHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhh
Q 009362 138 GDYPLSATIMSEFANKMTRGAFIAA---VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGS 214 (536)
Q Consensus 138 ~~~~~~~~~i~e~~~~~~rg~~~~~---~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 214 (536)
...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+. +..+||+.|++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-------------------~~~g~~~~f~~~~ 185 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL-------------------KNFGAAVAFGIPG 185 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH-------------------HTSCHHHHHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------ccccHHHHHHHHH
Confidence 9999999999999999999877666 88999999999999998884 3457999999987
Q ss_pred HHHHHHHHHHHc
Q 009362 215 IPAAFTYYWRMT 226 (536)
Q Consensus 215 ~~~~~~~~~~~~ 226 (536)
+..++..+..++
T Consensus 186 ~~~~~~~~~~~~ 197 (524)
T 2xut_A 186 VLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 776665554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=142.20 Aligned_cols=181 Identities=13% Similarity=0.003 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchh
Q 009362 284 GRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRV 363 (536)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 363 (536)
++.++...+..+......+......|.+.++ + .+..+ .+.......++..++.++.|+++||+|||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSC------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhH------------HHHHHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 3456666666666667777777888888777 5 77664 33667777888899999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhhc----ccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHH
Q 009362 364 AIQALGFFFMGVIYLAIGV----PYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFG 439 (536)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 439 (536)
+++..+.++.+++.+++.+ ... .+.+.+..++.+++.....+...+++.|.+|+++|++++|+.+...
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 164 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSS--------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccc--------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH
Confidence 9999999999998888876 433 2333344444455555556788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccc-cchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 440 KVGAIIGTVAFLWASHDDNKVNATG-VTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 440 ~~g~~~~~~~~~~l~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+|.+++|.+.+.+.+ ..+ |+.+|++.++++++..++.+++.||+++
T Consensus 165 ~~g~~~g~~~~~~l~~------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 165 NVGGGIPPLLFLLGMA------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHTSHHHHHHHHHH------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999999998753 456 9999999998888877776656776544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=137.49 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhh-----cCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQY-----IDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDR 359 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 359 (536)
+.++......++....+++...+.+.|+.+. +|.+.. ..+.......++..++.+++|+++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------------~~~~~~~~~~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRA------------TAASIMAIYASMVYLSGTIGGFVADR 80 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777888888889999999886 777766 45567778888899999999999999
Q ss_pred -hchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccc--cchhhhHhH
Q 009362 360 -IGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARF--RSTCHGISG 436 (536)
Q Consensus 360 -~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~ 436 (536)
+|||+++..+.++.+++.+++..... .+.+.+..++.+++.....+...+++.|.+|++. |+.+.++.+
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 81 IIGARPAVFWGGVLIMLGHIVLALPFG--------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHSCCS--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 89999999999999998888776544 2333334444444444456788889999999988 777888899
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 437 AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 437 ~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
...++|..++|.+.+.+.+ ..||+.+|++.++..+++.++.++..++
T Consensus 153 ~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQE------AAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999854 5689999999887777776665534333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-13 Score=130.90 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVA 364 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 364 (536)
+.++.+....+.............|.+.++ +|.+.. ..+.......++..++.++.|+++||+|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 92 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNF------------QAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSH------------HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 344555555666666666777778876666 888877 4557778888889999999999999999999
Q ss_pred HHHHhHHHHHHHHHHh---hcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHH
Q 009362 365 IQALGFFFMGVIYLAI---GVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKV 441 (536)
Q Consensus 365 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 441 (536)
.+..+.++.+++.++. ..... .+.+.+..++.+++.....+...+++.|.+|+++|+.++++.+....+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIMN--------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccc--------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 9999999999988877 44333 444555555555555556678889999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-cccccc-------------------cccccchhhHHHHHHHHHHHHHhh
Q 009362 442 GAIIGTVAFLWAS-HDDNKV-------------------NATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 442 g~~~~~~~~~~l~-~~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
|..++|.+.+.+. +..+.. ...+|+..|++.+++.++..++.+
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 322100 000178888777776666555544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=128.80 Aligned_cols=176 Identities=9% Similarity=-0.070 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHh
Q 009362 290 CATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALG 369 (536)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 369 (536)
+....+.............|.+.++ +|.++. ..+.......++..++.++.|+++||+|||+.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~------------~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 71 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREG------------AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG 71 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTH------------HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3444444555555566667776665 888776 444677777888889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHHHHH
Q 009362 370 FFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIGTVA 449 (536)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 449 (536)
..+..++.++...... .+.+.+..+..+.+.....+...++..|.+|+++|++++++.+....+|..++|.+
T Consensus 72 ~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 72 MSIFMLATLVAVTTSS--------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9998888887776544 34444445555555555567888899999999999999999999999999999999
Q ss_pred HHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 450 FLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 450 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
.+++. +..+|+..|++.+++.++..+..++..||+++
T Consensus 144 ~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 144 GGLLD------TMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHSS------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHH------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 99984 35588999998888888877766656776544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=129.08 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcC------CCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 009362 285 RDLFACATSWLLVDIVFYSSNLFQSKIYHQYID------GNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFID 358 (536)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 358 (536)
+.++.+.+..++....+++...+.+.++.+.+| +++.+ .+.......++.+++.+++|+++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~d 79 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------------AKDVFHSFVIGVYFFPLLGGWIAD 79 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------------HHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888899999887788 77774 346677777888899999999999
Q ss_pred hh-chhHHHHHhHHHHHHHHHHhhccc-ccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhH--
Q 009362 359 RI-GRVAIQALGFFFMGVIYLAIGVPY-SYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGI-- 434 (536)
Q Consensus 359 ~~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-- 434 (536)
|+ |||+++..+.++.+++.+++.+.. . .+.+.+..++.+++.....+...+++.|.+|++.|+++.+.
T Consensus 80 r~~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (524)
T 2xut_A 80 RFFGKYNTILWLSLIYCVGHAFLAIFEHS--------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFD 151 (524)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHH
Confidence 99 999999999998888888777655 3 34444445555566666668888999999999999876666
Q ss_pred -hHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhh
Q 009362 435 -SGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITY 484 (536)
Q Consensus 435 -~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 484 (536)
.+...++|..++|.+.+.+.+ ..+|+.+|++.+++.+++.++.+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLK------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHH------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998853 45889999988888777766655
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=125.29 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=119.1
Q ss_pred ChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcc
Q 009362 61 PNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDY 140 (536)
Q Consensus 61 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 140 (536)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++. +.+++..++.+++.+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA------LEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSH------HHHHHHTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHH
Confidence 35567888888889999999999999999999999999998888887777776664 677778888888877667
Q ss_pred hhhhHhhhccCCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHH
Q 009362 141 PLSATIMSEFANKMTRGAFIAA-VFSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAF 219 (536)
Q Consensus 141 ~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~ 219 (536)
+....++.|.+|++.|+++.++ .+.+..+|..++|.+++.+.+ ..|++..|.+.+++.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~-------------------~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------------------SIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH-------------------HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-------------------hcCcHHHHHHHHHHHHH
Confidence 7778999999999999999998 478888999999999998853 34688888887777776
Q ss_pred HHHH-HHcCCCCcc
Q 009362 220 TYYW-RMTMPESAR 232 (536)
Q Consensus 220 ~~~~-~~~~~esp~ 232 (536)
..+. ..+.||.++
T Consensus 392 ~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTSSCCSCT
T ss_pred HHHHHHhhhcCCCc
Confidence 6544 344565443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-11 Score=119.66 Aligned_cols=180 Identities=11% Similarity=0.046 Sum_probs=125.3
Q ss_pred HhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 009362 30 FTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLA 109 (536)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 109 (536)
+........+....+.+.+.. +.+............+...++.++.+++.||+|||+.++.+.....++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTL--------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhc--------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 333333344455567777777 788888888888888999999999999999999999999999888887776
Q ss_pred hhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009362 110 CGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATT 189 (536)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~~~ 189 (536)
.+.............+.+.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+...+.+....
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-- 435 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-- 435 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH--
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 6554332122222222233333333333 4577789999999999999999999999999999888877665332111
Q ss_pred ccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCc
Q 009362 190 TRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESA 231 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp 231 (536)
....++.+.|++.++++++. ++.++++||+.
T Consensus 436 -----------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 436 -----------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred -----------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 12234566777766666665 45567899985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 536 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 7e-18 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 84.0 bits (206), Expect = 7e-18
Identities = 65/484 (13%), Positives = 131/484 (27%), Gaps = 61/484 (12%)
Query: 17 YHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGT 76
++ + G M L + L+ +
Sbjct: 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYL---------VEQGFSRGDLGFALSGISIAY 72
Query: 77 VIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGI 136
+ + G + D R L+L L GF + + FL G
Sbjct: 73 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF--VPWATSSIAVMFVLLFLCGWFQ 130
Query: 137 GGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILASSTVTMAVCKIFEATTTRDNDVN 196
G +P M + ++ RG ++ G + + F
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----------- 179
Query: 197 KRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSI 256
+ A + + A F + P+S + E EK
Sbjct: 180 ---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA----- 231
Query: 257 SQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYI 316
I +++ + + + + + L S Y + +
Sbjct: 232 ----------EQELTAKQIFMQYVLPNKLLWYIAIANVFV--YLLRYGILDWSPTYLKEV 279
Query: 317 DGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVI 376
D+ + + IPG + + D++ R A G FFM ++
Sbjct: 280 KHFALDK-----------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328
Query: 377 YLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISG 436
+A V + + N + + F +GP + EL P + T G +G
Sbjct: 329 TIATIVYW---MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 385
Query: 437 AFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSLE 496
FG +G + A + + D G +++ G + + R +
Sbjct: 386 LFGYLGGSVAASAIVGYTVD-----FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440
Query: 497 ENEK 500
++
Sbjct: 441 LLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 45/446 (10%), Positives = 91/446 (20%), Gaps = 69/446 (15%)
Query: 55 ADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSI 114
D I + + A L +++ Q +FG L D +G R+ + M++ I
Sbjct: 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94
Query: 115 CTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGILAS 174
+G + +G + A G
Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154
Query: 175 STVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFTYYWRMTMPESARYT 234
+++ + + ++
Sbjct: 155 ASIVGI-------------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 235 ALVEQNVMQAAKDMEKVLDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSW 294
+ S + R S
Sbjct: 196 T----------------------------VANAVGANHSAFSLKLALELFRQPKLWFLSL 227
Query: 295 LLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTV 354
++ + Q +Q F + +
Sbjct: 228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287
Query: 355 FFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTT 414
+ I ++ S T+ + + F
Sbjct: 288 GKNALLLAGTIMSVRIIG---------------SSFATSALEVVILKTLHMFEVPFLLVG 332
Query: 415 TFIVPAELFPARFRSTCHGI-SGAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILG 473
F F RF +T + + F ++ I +V + G A L+LG
Sbjct: 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM------YESIGFQGAYLVLG 386
Query: 474 GVCFMGFAITYFFTRETMGRSLEENE 499
V I+ F SL +
Sbjct: 387 LVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 536 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.54 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.46 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-39 Score=319.36 Aligned_cols=414 Identities=14% Similarity=0.149 Sum_probs=296.9
Q ss_pred CcceehHHHHHHHHHHHHhhhhhhcchhhhHhhhhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccch
Q 009362 13 KTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLLGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGR 92 (536)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Gr 92 (536)
..++++|..+..++++++..++++..++.+.|.+. |+ |+|.+|+|++.+++.++++++++++|+++||+||
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~--------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~ 88 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ--------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 88 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SS--------TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34567888988899999999999999999988775 57 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCcccchhHHHHHHHHHHHHHH
Q 009362 93 RRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANKMTRGAFIAAVFSMQGFGIL 172 (536)
Q Consensus 93 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 172 (536)
|+++.++.++.+++.++++++..+ ..+++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|.+
T Consensus 89 r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 166 (447)
T d1pw4a_ 89 RVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 166 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhccccchh--hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh
Confidence 999999999999999998877522 012389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHHHHH-HHHHHcCCCCcchhhhhhhcHHHHHHhHHHH
Q 009362 173 ASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPAAFT-YYWRMTMPESARYTALVEQNVMQAAKDMEKV 251 (536)
Q Consensus 173 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~ 251 (536)
+++.+++.+.... .+||+.|++.+++.++. ++.+++.+|+|+.... .+.++.++...+
T Consensus 167 i~~~~~~~~~~~~------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 225 (447)
T d1pw4a_ 167 IPPLLFLLGMAWF------------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL--PPIEEYKNDYPD- 225 (447)
T ss_dssp SHHHHHHHHHHHT------------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC--CSCTTTCCC----
T ss_pred hhhhhhhhHhhhh------------------hcccccchhhhhhHHHHHHHHHHhcccchhhccc--chhhhhhhhccc-
Confidence 9999988875433 36999999877766664 4555667777654211 111100000000
Q ss_pred hccccccccccCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHH
Q 009362 252 LDVSISQIAEEYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEA 331 (536)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 331 (536)
+..++.+++....+...+... ..+.++......++.....++...+.+.++.+..+.+..
T Consensus 226 --------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 285 (447)
T d1pw4a_ 226 --------DYNEKAEQELTAKQIFMQYVL--PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD---------- 285 (447)
T ss_dssp ------------------CCTHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH----------
T ss_pred --------chhhccccccchhhHHHHHHH--cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccc----------
Confidence 000000111111122122211 224566667777777788888899999999887777765
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCc
Q 009362 332 FKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGP 411 (536)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (536)
..........++.+++.++++++.||++|++..........+.......... . .....+...+..+..++...+.
T Consensus 286 --~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~~~~~~ 360 (447)
T d1pw4a_ 286 --KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--N-PAGNPTVDMICMIVIGFLIYGP 360 (447)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--C-CTTCHHHHHHHHHHHHHHHTHH
T ss_pred --hhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--c-ccccHHHHHHHHHHHHHHHHHH
Confidence 4556677778888999999999999998875443333332222222221111 0 1122333333334444444455
Q ss_pred cccccccccccccccccchhhhHhHHHHHHH-HHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeecc
Q 009362 412 NTTTFIVPAELFPARFRSTCHGISGAFGKVG-AIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRE 489 (536)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (536)
.+....+..|.+|++.|+++.|+.+.+++++ .+++|.+.|++.+ ..|+...|++.+++++++.++.+.+.++
T Consensus 361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788899999999999999999998885 5678999999954 5578888888888888777776644443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.2e-29 Score=245.23 Aligned_cols=391 Identities=16% Similarity=0.071 Sum_probs=252.3
Q ss_pred HHHHHhhhhhhcchhhhHhh-hhhhhccCCCCCCCCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHH
Q 009362 26 GMGLFTDAYDLFCIPPIMKL-LGRIYYSDGADRFQIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMV 104 (536)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 104 (536)
.+..+...+......+.+|. +.+++ |+|.+++|++.+++.++..++++++|+++||+|||++++++..+..
T Consensus 13 ~~~~f~~~~~~~~~~~~l~~~l~~~~--------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 13 GLFFFFYFFIMGAYFPFFPIWLHDIN--------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 34444555555666777776 66778 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHhhhccCcchhhhHhhhccCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009362 105 LSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGGDYPLSATIMSEFANK--MTRGAFIAAVFSMQGFGILASSTVTMAVC 182 (536)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~i~~~~~~~l~ 182 (536)
++.++..+..+.. ......++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.
T Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (417)
T d1pv7a_ 85 VMFAPFFIFIFGP--LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp HTHHHHHHHTHHH--HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh--hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc
Confidence 9888888776530 0112345566666666665555555555444433 34556777788888899999999998885
Q ss_pred HhhhcccccCCcccccccCCCCchhHHHHHhhH-HHHHHHHHHHcCCCCcchhhhhhhcHHHHHHhHHHHhccccccccc
Q 009362 183 KIFEATTTRDNDVNKRQHQADIAWRLILMLGSI-PAAFTYYWRMTMPESARYTALVEQNVMQAAKDMEKVLDVSISQIAE 261 (536)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~-~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (536)
.. +|+..+..... ..+...+..+..+|+++.. ++++++..+
T Consensus 163 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------- 204 (417)
T d1pv7a_ 163 TI--------------------NNQFVFWLGSGCALILAVLLFFAKTDAPSSA---TVANAVGAN--------------- 204 (417)
T ss_dssp HH--------------------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHHSC---------------
T ss_pred cc--------------------cccccccchhhHHHHHHHHHHHHhcccccch---hhhhhhhhh---------------
Confidence 32 46666655444 4444555566677776531 111111100
Q ss_pred cCCCCCCCCChhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHH
Q 009362 262 EYPLPPSPPQYPLISKRFLRRHGRDLFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIF 341 (536)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 341 (536)
+++.......+....+..+........... .........+.+... ... ...............
T Consensus 205 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~ 267 (417)
T d1pv7a_ 205 -----HSAFSLKLALELFRQPKLWFLSLYVIGVSC---TYDVFDQQFANFFTS-FFA--------TGEQGTRVFGYVTTM 267 (417)
T ss_dssp -----CCCCCHHHHHHHTTSSHHHHHHHHHHHHHH---HHHHHHHHHHHHHTT-SSS--------CHHHHHHHHHHHHHH
T ss_pred -----cccccccccccccccccccchhhhhHHHHH---HHHhhhccccccccc-ccc--------ccccchhhhcccccc
Confidence 011111111111111111111111111111 111111122222111 000 111222344556666
Q ss_pred HHHhhhhhHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccc
Q 009362 342 AICSTIPGYFVTVFFIDRIGRVAIQALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAE 421 (536)
Q Consensus 342 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (536)
..++..++..+.+++.||.++|+.+..+..+.+++.+.+..... .+...+..++.++......+...++..|
T Consensus 268 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 339 (417)
T d1pv7a_ 268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--------ALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc--------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999888887776655 3333444444444444455778889999
Q ss_pred cccccccchhhhHh-HHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccccch
Q 009362 422 LFPARFRSTCHGIS-GAFGKVGAIIGTVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMGRSL 495 (536)
Q Consensus 422 ~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (536)
.+|++.|+++.|+. +....+|..++|.+.|++.| ..|++.+|++.+++++++.++..+.+++++..+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 99999999999986 45667999999999999954 5688899999998888888877766666554443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.5e-14 Score=139.43 Aligned_cols=183 Identities=11% Similarity=-0.010 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHhhhhcCCCCCCccchhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhchhHHH
Q 009362 287 LFACATSWLLVDIVFYSSNLFQSKIYHQYIDGNGHDQTRSAFEEAFKVARHQAIFAICSTIPGYFVTVFFIDRIGRVAIQ 366 (536)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 366 (536)
+..+.+.++........+....| ++++ .|++..+.+ .......++..++.+++|+++||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g------------~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~ 92 (447)
T d1pw4a_ 27 FLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSRGDLG------------FALSGISIAYGFSKFIMGSVSDRSNPRVFL 92 (447)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHH-HTTS-STTCSSCHH------------HHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH-hCcCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 33333333333333334444445 4555 799888644 667777888889999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHHHHHhcCccccccccccccccccccchhhhHhHHHHHHHHHHH
Q 009362 367 ALGFFFMGVIYLAIGVPYSYKWSKHTNFGFMFLYALTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAFGKVGAIIG 446 (536)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 446 (536)
..+.++.+++.++.+...... .......+..+..+++.....+....++.|.+|+++|++++|+.+....+|..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~ 168 (447)
T d1pw4a_ 93 PAGLILAAAVMLFMGFVPWAT----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 168 (447)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHhhccccchhh----hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhh
Confidence 999999888888776654200 1123334444444444444457778889999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccchhhHHHHHHHHHHHHHhheeeccccc
Q 009362 447 TVAFLWASHDDNKVNATGVTIALLILGGVCFMGFAITYFFTRETMG 492 (536)
Q Consensus 447 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (536)
|.+.+.+.+.. .+|+..+++.+.+.++..++.+++.++.++
T Consensus 169 ~~~~~~~~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 169 PLLFLLGMAWF-----NDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHHHHHHHT-----CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhhhhHhhhh-----hcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 99888775432 367888888888887777777656655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1e-13 Score=133.04 Aligned_cols=146 Identities=9% Similarity=-0.008 Sum_probs=126.7
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHhhhccC
Q 009362 59 QIPNAVVSPMLALALLGTVIGQLVFGRLGDLIGRRRVYGLALMLMVLSSLACGFSICTTKQCVLGSLGFFRFLLGVGIGG 138 (536)
Q Consensus 59 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 138 (536)
+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++. +.+++..++.|++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA------LEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCH------HHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccccc------chhhHHHHHHHHHHHH
Confidence 5667788888999999999999999999999999999999999999999999999886 8889999999999999
Q ss_pred cchhhhHhhhccCCcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccccCCCCchhHHHHHhhHHH
Q 009362 139 DYPLSATIMSEFANKMTRGAFIAAV-FSMQGFGILASSTVTMAVCKIFEATTTRDNDVNKRQHQADIAWRLILMLGSIPA 217 (536)
Q Consensus 139 ~~~~~~~~i~e~~~~~~rg~~~~~~-~~~~~~G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~ 217 (536)
..+...+++.|.+|+++|+++.++. +....+|..++|.+++++.+ ..||+..|++.+++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------------------~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------------------SIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHH
Confidence 9999999999999999999999975 56778999999999999954 347999999877777
Q ss_pred HHHHHH-HHcCCC
Q 009362 218 AFTYYW-RMTMPE 229 (536)
Q Consensus 218 ~~~~~~-~~~~~e 229 (536)
++..+. .+.+++
T Consensus 390 ~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 390 LGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcC
Confidence 665444 344443
|