Citrus Sinensis ID: 009369

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
METTLLHSTIHVASFPSPTRSIRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLSHPHINHQHHYHDHHHHHRHNDCSELSGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
ccccccHHccccccccccEEEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEcccccccccEEEEccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEccHHHHHcccccEEEEcccccccccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccEEEccccEEEEEccEEEEEccc
cccEEEEEEEEEcccccccHHHHHccccccccEEEEEccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHEEEEcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEcccccccccccccEEEEEccEEEEccEEEEcccccccccEEEEEccccccHHHcccccccEEcccccEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHcHccccccEEEEcccHHccccEEEccHHHHHHHccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHccccccccEEEEEcccEEEEEcc
METTLLHSTihvasfpsptrsirlkrvnslkptlsfthpvirfnfkplnyrpvnclshphinhqhhyhdhhhhhrhndcselsgpQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAacpyllpkpaikplqNAFLAVAFPLVGVSASLDaltdiaggkVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKElkenypdsvlvlnvdddnlpdvsdlayrsvpvhdveVGSYILVgageavpvdcevyqGTATITIEhltgevkpleakvgdripggarnldgRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIgpflfkwsfigtsvcRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHtiafdktgtlttgglmfkaiepiyghwirskkthdisccipnCEKEALAVAAAMEkgtthpigravvdhsigkdlpsvsidrfeyfpgrgltatVNGIEVLKNIF
mettllhstihvasfpsptrsirLKRVNslkptlsfthPVIRFNFKPLNYRPVNCLSHPHINHQHHYHDHHHHHRHNDCSELSGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITiehltgevkpleakvgdripggarnldgrmILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTthpigravvdhsigkdlpsvSIDRFEYfpgrgltatvngievlknif
METTLLHSTIHVASFPSPTRSIRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLShphinhqhhyhdhhhhhrhNDCSELSGPQKAVIKFAKATRWLDLANFLREHlqlcccaaalflaaaacpyllpkpaIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYpdsvlvlnvdddnlpdvsdlAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKvvvvLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCalavaplayataISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
*********IHV*********IRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLSHPHI**************************AVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLK***
*********IHVASFPSPTR****************THPVIRFNFK***************************************************WLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEE*****PK*QRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
METTLLHSTIHVASFPSPTRSIRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLSHPHIN*********************GPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
*ETTLLHSTIHVASFPSPTRSIRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLSHPHINHQHHYH*******HNDCSELSGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGH**************PNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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METTLLHSTIHVASFPSPTRSIRLKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCLSHPHINHQHHYHDHHHHHRHNDCSELSGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKNIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
Q9M3H5 819 Probable cadmium/zinc-tra yes no 0.837 0.548 0.813 0.0
Q60048 711 Probable cadmium-transpor yes no 0.764 0.576 0.263 3e-40
P58414 707 Probable cadmium-transpor yes no 0.582 0.441 0.274 9e-40
Q59998 721 Zinc-transporting ATPase N/A no 0.785 0.583 0.293 2e-39
P20021 727 Probable cadmium-transpor yes no 0.617 0.455 0.273 3e-38
O32219 702 Cadmium, zinc and cobalt- yes no 0.664 0.507 0.294 3e-38
Q6GIX1 726 Probable cadmium-transpor yes no 0.617 0.455 0.271 4e-37
P30336 723 Probable cadmium-transpor no no 0.664 0.492 0.260 5e-37
Q59465 686 Cadmium, zinc and cobalt- yes no 0.798 0.623 0.257 9e-37
O31688 637 Zinc-transporting ATPase no no 0.654 0.551 0.293 1e-36
>sp|Q9M3H5|HMA1_ARATH Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/450 (81%), Positives = 402/450 (89%), Gaps = 1/450 (0%)

Query: 83  SGPQKAVIKFAKATRWLDLANFLREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFL 142
           S PQK +  FAKA  W+ LAN+LREHL LCC AAA+FLAAA CPYL P+P IK LQNAF+
Sbjct: 100 SKPQKMLFGFAKAIGWVRLANYLREHLHLCCSAAAMFLAAAVCPYLAPEPYIKSLQNAFM 159

Query: 143 AVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAE 202
            V FPLVGVSASLDAL DIAGGKVNIHVLMA AAFAS+FMGN+LEGGLLLAMFNLAHIAE
Sbjct: 160 IVGFPLVGVSASLDALMDIAGGKVNIHVLMALAAFASVFMGNALEGGLLLAMFNLAHIAE 219

Query: 203 EFFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGE 262
           EFFTSR+MVDVKELKE+ PDS L++ V + N+P++SDL+Y+SVPVH VEVGSY+LVG GE
Sbjct: 220 EFFTSRSMVDVKELKESNPDSALLIEVHNGNVPNISDLSYKSVPVHSVEVGSYVLVGTGE 279

Query: 263 AVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLN 322
            VPVDCEVYQG+ATITIEHLTGEVKPLEAK GDR+PGGARNLDGRMI+KATK WN+STLN
Sbjct: 280 IVPVDCEVYQGSATITIEHLTGEVKPLEAKAGDRVPGGARNLDGRMIVKATKAWNDSTLN 339

Query: 323 RIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSV 382
           +IVQLTEEA  NKPKLQRWLDEFGE YSKVVVVLSLAIA +GPFLFKW F+ T+ CRGSV
Sbjct: 340 KIVQLTEEAHSNKPKLQRWLDEFGENYSKVVVVLSLAIAFLGPFLFKWPFLSTAACRGSV 399

Query: 383 YRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
           YRALGLMVAASPCALAVAPLAYATAISSCARKGILLKG QVLDALASCHTIAFDKTGTLT
Sbjct: 400 YRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGAQVLDALASCHTIAFDKTGTLT 459

Query: 443 TGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSI 502
           TGGL  KAIEPIYGH      +  I+CCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHS+
Sbjct: 460 TGGLTCKAIEPIYGHQ-GGTNSSVITCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSV 518

Query: 503 GKDLPSVSIDRFEYFPGRGLTATVNGIEVL 532
           GKDLPS+ ++ FEYFPGRGLTATVNG++ +
Sbjct: 519 GKDLPSIFVESFEYFPGRGLTATVNGVKTV 548
Involved in cadmium/zinc transport.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 5
>sp|Q60048|CADA_LISMN Probable cadmium-transporting ATPase OS=Listeria monocytogenes GN=cadA PE=1 SV=1 Back     alignment and function description
>sp|P58414|CADA_LISMO Probable cadmium-transporting ATPase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=cadA PE=3 SV=1 Back     alignment and function description
>sp|Q59998|ATZN_SYNY3 Zinc-transporting ATPase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ziaA PE=1 SV=1 Back     alignment and function description
>sp|P20021|CADA1_STAAU Probable cadmium-transporting ATPase OS=Staphylococcus aureus GN=cadA PE=3 SV=1 Back     alignment and function description
>sp|O32219|CADA_BACSU Cadmium, zinc and cobalt-transporting ATPase OS=Bacillus subtilis (strain 168) GN=cadA PE=1 SV=1 Back     alignment and function description
>sp|Q6GIX1|CADA_STAAR Probable cadmium-transporting ATPase OS=Staphylococcus aureus (strain MRSA252) GN=cadA PE=3 SV=1 Back     alignment and function description
>sp|P30336|CADA_BACPE Probable cadmium-transporting ATPase OS=Bacillus pseudofirmus (strain OF4) GN=cadA PE=3 SV=2 Back     alignment and function description
>sp|Q59465|HMCT_HELPY Cadmium, zinc and cobalt-transporting ATPase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=cadA PE=1 SV=2 Back     alignment and function description
>sp|O31688|ZOSA_BACSU Zinc-transporting ATPase OS=Bacillus subtilis (strain 168) GN=zosA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
255567899 820 heavy metal cation transport atpase, put 0.981 0.641 0.745 0.0
356565533 817 PREDICTED: probable cadmium/zinc-transpo 0.841 0.552 0.811 0.0
224094264 825 heavy metal ATPase [Populus trichocarpa] 0.958 0.623 0.668 0.0
225438839 829 PREDICTED: probable cadmium/zinc-transpo 0.841 0.544 0.782 0.0
7710954 819 putative metal ATPase [Arabidopsis thali 0.837 0.548 0.813 0.0
15235511 819 putative cadmium/zinc-transporting ATPas 0.837 0.548 0.813 0.0
63253545 819 chloroplast heavy metal P-type ATPase pr 0.837 0.548 0.808 0.0
297798152 826 hypothetical protein ARALYDRAFT_490893 [ 0.830 0.538 0.820 0.0
449484083 824 PREDICTED: probable cadmium/zinc-transpo 0.847 0.550 0.799 0.0
449468396 823 PREDICTED: probable cadmium/zinc-transpo 0.847 0.551 0.799 0.0
>gi|255567899|ref|XP_002524927.1| heavy metal cation transport atpase, putative [Ricinus communis] gi|223535762|gb|EEF37424.1| heavy metal cation transport atpase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/546 (74%), Positives = 461/546 (84%), Gaps = 20/546 (3%)

Query: 1   METTLLHSTIHVASFPSPTRSIR----LKRVNSLKPTLSFTHPVIRFNFKPLNYRPVNCL 56
           METT L   I V  FPS + S +     +R  SL  +LS     I  NF   + R V C 
Sbjct: 1   METTALRHAIGVKGFPSVSYSSKQLAITRRRRSLD-SLSLIFRPISLNF---HNRTVRCT 56

Query: 57  SHPHINHQHHYHDHHHHHRH------------NDCSELSGPQKAVIKFAKATRWLDLANF 104
           +H   +H HH+H +H+HH H             D  ELSGPQ+A+I FAKA +W+DLAN 
Sbjct: 57  AHSKNHHDHHHHHNHNHHHHHHHHHHHHNHSHGDVEELSGPQRALINFAKAVKWIDLANL 116

Query: 105 LREHLQLCCCAAALFLAAAACPYLLPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGG 164
           LRE+LQLCCC+AALF+AAAACPYL+P P +KP+QNAF+ VAFPLVGVSASLDALTD+ GG
Sbjct: 117 LRENLQLCCCSAALFVAAAACPYLIPNPVVKPIQNAFIIVAFPLVGVSASLDALTDVTGG 176

Query: 165 KVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSV 224
           KVNIHVLMA AAF+S+FMGN+LEGGLLLAMFNLAHIAEEFFTSR+MVDVKELKE++PDS 
Sbjct: 177 KVNIHVLMALAAFSSVFMGNALEGGLLLAMFNLAHIAEEFFTSRSMVDVKELKESHPDSA 236

Query: 225 LVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTG 284
           LVL+V+D+ LPD+SDL+Y S+PVHDV+VGS+ILVG GEAVPVDCEV+QG ATITIEHLTG
Sbjct: 237 LVLDVNDEKLPDLSDLSYESIPVHDVKVGSFILVGTGEAVPVDCEVFQGRATITIEHLTG 296

Query: 285 EVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDE 344
           E+KP+E KVGDRIPGGARNLDGR+I+KATK W ESTLNRIVQLTEEAQLNKPKLQRWLDE
Sbjct: 297 EIKPVEIKVGDRIPGGARNLDGRIIVKATKMWKESTLNRIVQLTEEAQLNKPKLQRWLDE 356

Query: 345 FGEQYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVAPLAY 404
           FGE YSKVVV LS+A+AL+GPFLF W FIGTS CRGSVYRALGLMVAASPCALAVAPLAY
Sbjct: 357 FGEHYSKVVVGLSIAVALLGPFLFNWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAY 416

Query: 405 ATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKT 464
           A AISSCARKGILLKGGQVLDAL+SCHTIAFDKTGTLTTGGLMFKAIEP++GH + +K T
Sbjct: 417 AIAISSCARKGILLKGGQVLDALSSCHTIAFDKTGTLTTGGLMFKAIEPLFGHELVNKNT 476

Query: 465 HDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
           +  SCCIP+CEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLP VS++ FE FPGRGLTA
Sbjct: 477 NFTSCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPFVSVESFECFPGRGLTA 536

Query: 525 TVNGIE 530
           T+N IE
Sbjct: 537 TLNNIE 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356565533|ref|XP_003550994.1| PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224094264|ref|XP_002310116.1| heavy metal ATPase [Populus trichocarpa] gi|222853019|gb|EEE90566.1| heavy metal ATPase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438839|ref|XP_002278549.1| PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Vitis vinifera] gi|296087394|emb|CBI33768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|7710954|emb|CAB90352.1| putative metal ATPase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15235511|ref|NP_195444.1| putative cadmium/zinc-transporting ATPase HMA1 [Arabidopsis thaliana] gi|12643808|sp|Q9M3H5.2|HMA1_ARATH RecName: Full=Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; AltName: Full=Protein HEAVY METAL ATPASE 1; Flags: Precursor gi|4006855|emb|CAB16773.1| Cu2+-transporting ATPase-like protein [Arabidopsis thaliana] gi|7270710|emb|CAB80393.1| Cu2+-transporting ATPase-like protein [Arabidopsis thaliana] gi|57283989|emb|CAI43274.1| putative metal-transporting ATPase [Arabidopsis thaliana] gi|332661375|gb|AEE86775.1| putative cadmium/zinc-transporting ATPase HMA1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|63253545|gb|AAY34978.1| chloroplast heavy metal P-type ATPase precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798152|ref|XP_002866960.1| hypothetical protein ARALYDRAFT_490893 [Arabidopsis lyrata subsp. lyrata] gi|297312796|gb|EFH43219.1| hypothetical protein ARALYDRAFT_490893 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449484083|ref|XP_004156779.1| PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449468396|ref|XP_004151907.1| PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
TAIR|locus:2115020 819 HMA1 "heavy metal atpase 1" [A 0.837 0.548 0.715 2.1e-169
TIGR_CMR|BA_0410 641 BA_0410 "heavy metal-transport 0.531 0.444 0.306 7.9e-30
UNIPROTKB|P37617 732 zntA [Escherichia coli K-12 (t 0.561 0.411 0.291 1.7e-27
UNIPROTKB|Q87UL7 752 cadA-1 "Cadmium-translocating 0.492 0.351 0.303 2.7e-27
UNIPROTKB|Q9KT72 768 VC_1033 "Cation transport ATPa 0.520 0.363 0.288 5.4e-27
TIGR_CMR|VC_1033 768 VC_1033 "cation transport ATPa 0.520 0.363 0.288 5.4e-27
TIGR_CMR|CHY_0860 686 CHY_0860 "cation-transporting 0.492 0.384 0.281 8.1e-26
UNIPROTKB|P74512 780 slr1950 "Cation-transporting A 0.503 0.346 0.308 3e-25
TIGR_CMR|GSU_2147 713 GSU_2147 "cadmium-translocatin 0.526 0.395 0.270 3.2e-25
TAIR|locus:2119265 949 PAA1 "P-type ATP-ase 1" [Arabi 0.509 0.287 0.3 4.4e-25
TAIR|locus:2115020 HMA1 "heavy metal atpase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1630 (578.8 bits), Expect = 2.1e-169, Sum P(2) = 2.1e-169
 Identities = 322/450 (71%), Positives = 350/450 (77%)

Query:    83 SGPQKAVIKFAKATRWLDLANFLREHXXXXXXXXXXXXXXXXXXXXXXXXXIKPLQNAFL 142
             S PQK +  FAKA  W+ LAN+LREH                         IK LQNAF+
Sbjct:   100 SKPQKMLFGFAKAIGWVRLANYLREHLHLCCSAAAMFLAAAVCPYLAPEPYIKSLQNAFM 159

Query:   143 AVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAE 202
              V FPLVGVSASLDAL DIAGGKVNIHVLMA AAFAS+FMGN+LEGGLLLAMFNLAHIAE
Sbjct:   160 IVGFPLVGVSASLDALMDIAGGKVNIHVLMALAAFASVFMGNALEGGLLLAMFNLAHIAE 219

Query:   203 EFFTSRAMVDVKELKENYXXXXXXXXXXXXXXXXXXXXAYRSVPVHDVEVGSYILVGAGE 262
             EFFTSR+MVDVKELKE+                     +Y+SVPVH VEVGSY+LVG GE
Sbjct:   220 EFFTSRSMVDVKELKESNPDSALLIEVHNGNVPNISDLSYKSVPVHSVEVGSYVLVGTGE 279

Query:   263 AVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLN 322
              VPVDCEVYQG+ATITIEHLTGEVKPLEAK GDR+PGGARNLDGRMI+KATK WN+STLN
Sbjct:   280 IVPVDCEVYQGSATITIEHLTGEVKPLEAKAGDRVPGGARNLDGRMIVKATKAWNDSTLN 339

Query:   323 RIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALIGPFLFKWSFIGTSVCRGSV 382
             +IVQLTEEA  NKPKLQRWLDEFGE YSK    LSLAIA +GPFLFKW F+ T+ CRGSV
Sbjct:   340 KIVQLTEEAHSNKPKLQRWLDEFGENYSKVVVVLSLAIAFLGPFLFKWPFLSTAACRGSV 399

Query:   383 YRALGLMVAASPCXXXXXXXXXXXXISSCARKGILLKGGQVLDALASCHTIAFDKTGTLT 442
             YRALGLMVAASPC            ISSCARKGILLKG QVLDALASCHTIAFDKTGTLT
Sbjct:   400 YRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGAQVLDALASCHTIAFDKTGTLT 459

Query:   443 TGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSI 502
             TGGL  KAIEPIYGH      +  I+CCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHS+
Sbjct:   460 TGGLTCKAIEPIYGHQ-GGTNSSVITCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSV 518

Query:   503 GKDLPSVSIDRFEYFPGRGLTATVNGIEVL 532
             GKDLPS+ ++ FEYFPGRGLTATVNG++ +
Sbjct:   519 GKDLPSIFVESFEYFPGRGLTATVNGVKTV 548
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004008 "copper-exporting ATPase activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006754 "ATP biosynthetic process" evidence=IEA
GO:0006812 "cation transport" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0030001 "metal ion transport" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006878 "cellular copper ion homeostasis" evidence=IMP
GO:0009642 "response to light intensity" evidence=IMP
GO:0016887 "ATPase activity" evidence=IMP
GO:0005388 "calcium-transporting ATPase activity" evidence=IGI
GO:0006816 "calcium ion transport" evidence=IGI
GO:0009636 "response to toxic substance" evidence=IGI
GO:0015434 "cadmium-transporting ATPase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
GO:0015633 "zinc transporting ATPase activity" evidence=IDA
GO:0055069 "zinc ion homeostasis" evidence=IMP
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|BA_0410 BA_0410 "heavy metal-transporting ATPase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P37617 zntA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q87UL7 cadA-1 "Cadmium-translocating P-type ATPase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KT72 VC_1033 "Cation transport ATPase, E1-E2 family" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1033 VC_1033 "cation transport ATPase, E1-E2 family" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0860 CHY_0860 "cation-transporting ATPase, E1-E2 family, selenocysteine-containing" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P74512 slr1950 "Cation-transporting ATPase E1-E2 ATPase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2147 GSU_2147 "cadmium-translocating P-type ATPase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2119265 PAA1 "P-type ATP-ase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M3H5HMA1_ARATH3, ., 6, ., 3, ., 50.81330.83760.5482yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VII0826
heavy metal ATPase (825 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.155910001
hypothetical protein (172 aa)
  •     0.504
eugene3.18960001
heavy metal ATPase (102 aa)
  •     0.484
fgenesh4_pg.C_scaffold_4351000001
hypothetical protein (166 aa)
  •     0.482

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
TIGR01512 536 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb 1e-127
TIGR01525 556 TIGR01525, ATPase-IB_hvy, heavy metal translocatin 1e-118
COG2217 713 COG2217, ZntA, Cation transport ATPase [Inorganic 7e-90
TIGR01511 572 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans 7e-58
pfam00122222 pfam00122, E1-E2_ATPase, E1-E2 ATPase 4e-52
TIGR01494 543 TIGR01494, ATPase_P-type, ATPase, P-type (transpor 6e-52
PRK11033 741 PRK11033, zntA, zinc/cadmium/mercury/lead-transpor 6e-50
PRK10671 834 PRK10671, copA, copper exporting ATPase; Provision 9e-35
COG0474 917 COG0474, MgtA, Cation transport ATPase [Inorganic 5e-17
TIGR01497 675 TIGR01497, kdpB, K+-transporting ATPase, B subunit 1e-11
TIGR01116 917 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic 4e-11
COG2216 681 COG2216, KdpB, High-affinity K+ transport system, 5e-11
PRK14010 673 PRK14010, PRK14010, potassium-transporting ATPase 3e-08
TIGR01647 754 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e 1e-06
PRK01122 679 PRK01122, PRK01122, potassium-transporting ATPase 3e-06
TIGR01522 884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 4e-06
TIGR01517 944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 3e-05
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 0.003
pfam04592238 pfam04592, SelP_N, Selenoprotein P, N terminal reg 0.003
TIGR01524 867 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating 0.004
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information 
 Score =  382 bits (982), Expect = e-127
 Identities = 145/366 (39%), Positives = 203/366 (55%), Gaps = 45/366 (12%)

Query: 168 IHVLMAFAAFASIFMGNSLEGGLLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVL 227
           + +LMA AA  ++ +G  LEG LLL +F++    EE+ + RA   +K L E  PD+  VL
Sbjct: 1   VDLLMALAALGAVAIGEYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL 60

Query: 228 NVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVK 287
                            V V +++VG  ++V  GE VPVD  V  GT+T+    LTGE  
Sbjct: 61  RGGS----------LEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESV 110

Query: 288 PLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGE 347
           P+E   GD +  GA NLDG + +  TK   +ST+ +IV L EEAQ  K K QR++D F  
Sbjct: 111 PVEKAPGDEVFAGAINLDGVLTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFAR 170

Query: 348 QYSKVVVVLSLAIALIGPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA-PLAYAT 406
            Y+ VV+ ++LAI L+   L +W F         VYRAL L+V ASPCAL ++ P AY +
Sbjct: 171 YYTPVVLAIALAIWLVPGLLKRWPF--------WVYRALVLLVVASPCALVISAPAAYLS 222

Query: 407 AISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHD 466
           AIS+ AR GIL+KGG  L+ALA   T+AFDKTGTLTTG      + P             
Sbjct: 223 AISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA------------ 270

Query: 467 ISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATV 526
                     E L +AAA E+ ++HP+ RA+VD++  ++    +++  E  PG G+ A V
Sbjct: 271 ----------EVLRLAAAAEQASSHPLARAIVDYARKRE----NVESVEEVPGEGVRAVV 316

Query: 527 NGIEVL 532
           +G EV 
Sbjct: 317 DGGEVR 322

This model describes the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterized members of the seed alignment include: SP|P37617 from E. coli, SP|Q10866 from Mycobacterium tuberculosis and SP|Q59998 from Synechocystis PCC6803. The cadmium P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the copper-ATPases (TIGR01511) are well separated, and thus we further type the copper-ATPases as IB1 and the cadmium-ATPases as IB2. Several sequences which have not been characterized experimentally fall just below trusted cutoff for both of these models (SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from Sulfolobus solfataricus, OMNI|NTL01CJ01098 from Campylobacter jejuni, OMNI|NTL01HS01687 from Halobacterium sp., GP|6899169 from Ureaplasma urealyticum and OMNI|HP1503 from Helicobacter pylori) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 536
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase Back     alignment and domain information
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional Back     alignment and domain information
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit Back     alignment and domain information
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region Back     alignment and domain information
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 100.0
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 100.0
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 100.0
TIGR01511 562 ATPase-IB1_Cu copper-(or silver)-translocating P-t 100.0
PRK10671 834 copA copper exporting ATPase; Provisional 100.0
TIGR01512 536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 100.0
TIGR01525 556 ATPase-IB_hvy heavy metal translocating P-type ATP 100.0
TIGR01647 755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 100.0
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 100.0
TIGR01524 867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 100.0
PRK01122 679 potassium-transporting ATPase subunit B; Provision 100.0
PRK10517 902 magnesium-transporting ATPase MgtA; Provisional 100.0
PRK14010 673 potassium-transporting ATPase subunit B; Provision 100.0
TIGR01522 884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 100.0
PRK15122 903 magnesium-transporting ATPase; Provisional 100.0
TIGR01517 941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 100.0
TIGR01494 499 ATPase_P-type ATPase, P-type (transporting), HAD s 100.0
TIGR01106 997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 100.0
TIGR01116 917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 100.0
KOG0204 1034 consensus Calcium transporting ATPase [Inorganic i 100.0
TIGR01523 1053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 100.0
COG0474 917 MgtA Cation transport ATPase [Inorganic ion transp 100.0
KOG0202 972 consensus Ca2+ transporting ATPase [Inorganic ion 100.0
TIGR01657 1054 P-ATPase-V P-type ATPase of unknown pump specifici 100.0
KOG0205 942 consensus Plasma membrane H+-transporting ATPase [ 100.0
PF00122230 E1-E2_ATPase: E1-E2 ATPase p-type cation-transport 100.0
TIGR01652 1057 ATPase-Plipid phospholipid-translocating P-type AT 100.0
COG2216 681 KdpB High-affinity K+ transport system, ATPase cha 100.0
KOG0208 1140 consensus Cation transport ATPase [Inorganic ion t 100.0
KOG0203 1019 consensus Na+/K+ ATPase, alpha subunit [Inorganic 99.98
PLN03190 1178 aminophospholipid translocase; Provisional 99.97
KOG0209 1160 consensus P-type ATPase [Inorganic ion transport a 99.95
KOG0210 1051 consensus P-type ATPase [Inorganic ion transport a 99.93
KOG0206 1151 consensus P-type ATPase [General function predicti 99.85
PF00702 215 Hydrolase: haloacid dehalogenase-like hydrolase; I 98.88
KOG4383 1354 consensus Uncharacterized conserved protein [Funct 90.22
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-79  Score=676.45  Aligned_cols=370  Identities=34%  Similarity=0.524  Sum_probs=345.7

Q ss_pred             CChhHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Q 009369          132 PAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAAFASIFMGNS--------LEGGLLLAMFNLAHIAEE  203 (536)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~~~~L~~la~~~s~~~g~~--------~~~~~il~~~~l~~~le~  203 (536)
                      +...|+++.++++++++.|+||++.+|+.++++++|||+|++++++.+|++|.|        .+++++++++.+++++|.
T Consensus       113 ~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md~Lv~la~~~A~~~s~~~~~~~~yf~~aa~ii~l~~~G~~LE~  192 (713)
T COG2217         113 FLLPWVSFLLATPVLFYGGWPFYRGAWRALRRGRLNMDTLVALATIGAYAYSLYATLFPVYFEEAAMLIFLFLLGRYLEA  192 (713)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999        899999999999999999


Q ss_pred             HHHHhhhhhHHHHhhcCCCceEEEecCCCCCCCcCCceEEEEeccccccCCEEEEcCCCccCcCeEEEecceeeeecccc
Q 009369          204 FFTSRAMVDVKELKENYPDSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLT  283 (536)
Q Consensus       204 ~~~~ra~~~i~~L~~~~p~~a~Vir~~~~~~~~~~~~~~~~V~~~~L~vGDiV~v~~Ge~IPaDgivl~G~~~Vdes~LT  283 (536)
                      +.+.|+.+++++|+++.|++++++++++         ++++|+++||++||+|+|+|||+||+||+|++|++.||||+||
T Consensus       193 ~a~~ra~~ai~~L~~l~p~~A~~~~~~~---------~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iT  263 (713)
T COG2217         193 RAKGRARRAIRALLDLAPKTATVVRGDG---------EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLT  263 (713)
T ss_pred             HHHHHHHHHHHHHHccCCCEEEEEecCC---------cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhh
Confidence            9999999999999999999999887642         4899999999999999999999999999999999999999999


Q ss_pred             CCCceEecCCCCeecccceEeceeEEEEEeeecCccHHHHHHHHHHHhhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHh
Q 009369          284 GEVKPLEAKVGDRIPGGARNLDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALI  363 (536)
Q Consensus       284 GEs~pv~K~~g~~V~aGt~~~~G~~~~~v~~tG~~T~~~ki~~lv~~a~~~k~~lq~~~~~~~~~~~~~~l~la~~~~~i  363 (536)
                      |||.|++|.+||.|++||+|.+|.++++|+++|.||+++||+++++++|.+|+|+|+++||++.+|+|.+++++++.++ 
T Consensus       264 GEs~PV~k~~Gd~V~aGtiN~~G~l~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~-  342 (713)
T COG2217         264 GESLPVEKKPGDEVFAGTVNLDGSLTIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFA-  342 (713)
T ss_pred             CCCCCEecCCCCEEeeeEEECCccEEEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888887743 


Q ss_pred             hhhhhhhccccccchhhhHHHHHHHHHhhhhchhhhH-HHHHHHHHHHHHHCCcEEecchHHHhhccccEEEecCCCccc
Q 009369          364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCALAVA-PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLT  442 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~i~vlv~a~P~aL~la-p~a~~~~i~~~a~~gilvk~~~~lE~Lg~v~~I~fDKTGTLT  442 (536)
                           .|+++...++..++++++++|+++|||||.++ |+++..++.+++|+||++|+++++|.++++|+++||||||||
T Consensus       343 -----~w~~~~~~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT  417 (713)
T COG2217         343 -----LWPLFGGGDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLT  417 (713)
T ss_pred             -----HHHHhcCCcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCc
Confidence                 34444434677789999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEEEecCCccccccccCCcccCCCCCHHHHHHHHHHHhcCCCChHHHHHHHhHhCCCCCCCCCCceeeecCCeE
Q 009369          443 TGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGL  522 (536)
Q Consensus       443 ~g~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~e~~s~HPia~AIv~~a~~~~~~~~~~~~~~~~~G~Gv  522 (536)
                      +|+|+|+++.+.++ +                ++++|++|+++|++|+||+|+||++++++++.  ..+++++++||+||
T Consensus       418 ~G~p~v~~v~~~~~-~----------------e~~~L~laAalE~~S~HPiA~AIv~~a~~~~~--~~~~~~~~i~G~Gv  478 (713)
T COG2217         418 EGKPEVTDVVALDG-D----------------EDELLALAAALEQHSEHPLAKAIVKAAAERGL--PDVEDFEEIPGRGV  478 (713)
T ss_pred             CCceEEEEEecCCC-C----------------HHHHHHHHHHHHhcCCChHHHHHHHHHHhcCC--CCccceeeeccCcE
Confidence            99999999998876 4                89999999999999999999999999998773  34567999999999


Q ss_pred             EEEEcCEEeeecc
Q 009369          523 TATVNGIEVLKNI  535 (536)
Q Consensus       523 ~a~v~g~~~~~~~  535 (536)
                      +|+++|+++..+.
T Consensus       479 ~~~v~g~~v~vG~  491 (713)
T COG2217         479 EAEVDGERVLVGN  491 (713)
T ss_pred             EEEECCEEEEEcC
Confidence            9999999988763

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03190 aminophospholipid translocase; Provisional Back     alignment and domain information
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0206 consensus P-type ATPase [General function prediction only] Back     alignment and domain information
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) Back     alignment and domain information
>KOG4383 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
3j08_A 645 High Resolution Helical Reconstruction Of The Bacte 2e-23
3j09_A 723 High Resolution Helical Reconstruction Of The Bacte 3e-23
3rfu_A 736 Crystal Structure Of A Copper-Transporting Pib-Type 6e-19
2hc8_A113 Structure Of The A. Fulgidus Copa A-Domain Length = 6e-09
2kij_A124 Solution Structure Of The Actuator Domain Of The Co 1e-07
3skx_A 280 Crystal Structure Of The Atp Binding Domain Of Arch 3e-06
3sky_A 274 2.1a Crystal Structure Of The Phosphate Bound Atp B 4e-06
2iye_A 263 Structure Of Catalytic Cpx-atpase Domain Copb-b Len 6e-06
2yj3_A 263 Conformational Changes In The Catalytic Domain Of T 2e-05
2yj4_A 263 Conformational Changes In The Catalytic Domain Of T 2e-05
3a1c_A 287 Crystal Structure Of The P- And N-Domains Of Copa, 4e-05
2dqs_A 995 Crystal Structure Of The Calcium Pump With Amppcp I 5e-05
1kju_A 994 Ca2+-Atpase In The E2 State Length = 994 5e-05
3tlm_A 992 Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp 5e-05
3a1e_A 287 Crystal Structure Of The P- And N-Domains Of His462 3e-04
3ba6_A 994 Structure Of The Ca2e1p Phosphoenzyme Intermediate 4e-04
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 24/282 (8%)
Query: 244 SVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARN 303
           +VPV +V VG  ++V  GE +PVD  V +G + +    ++GE  P+    GD + G   N
Sbjct: 145 AVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATIN 204
Query: 304 LDGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKXXXXLSLAIALI 363
             G + ++AT+   E+ L +IV+L E+A  +KP +QR  D+    +       ++ +  I
Sbjct: 205 NTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIP-----TVLLVAI 259
Query: 364 GPFLFKWSFIGTSVCRGSVYRALGLMVAASPCXXXXXX-XXXXXXISSCARKGILLKGGQ 422
             F++ W FI  +    +    + ++V A PC             +   A  GIL+K   
Sbjct: 260 SAFIY-WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNAD 318
Query: 423 VLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEALAVA 482
            L+       + FDKTGTLT G      + P+ G                  E+E L +A
Sbjct: 319 ALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGD-----------------ERELLRLA 361
Query: 483 AAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTA 524
           A  E+ + HPI  A+V  ++   +     ++ E   G G+ A
Sbjct: 362 AIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 403
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723 Back     alignment and structure
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase Length = 736 Back     alignment and structure
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113 Back     alignment and structure
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper- Transporting Atpase Atp7a Length = 124 Back     alignment and structure
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of Archaeoglobus Fulgidus Copb Length = 280 Back     alignment and structure
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding Domain Of Archaeoglobus Fulgidus Copb Length = 274 Back     alignment and structure
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b Length = 263 Back     alignment and structure
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx- Atpase Copb-B Upon Nucleotide Binding Length = 263 Back     alignment and structure
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx- Atpase Copb-B Upon Nucleotide Binding Length = 263 Back     alignment and structure
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg Length = 287 Back     alignment and structure
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995 Back     alignment and structure
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994 Back     alignment and structure
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992 Back     alignment and structure
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln Mutant Copa, A Copper-Transporting P-Type Atpase, Bound With Amppcp-Mg Length = 287 Back     alignment and structure
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 2e-45
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 6e-45
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 2e-44
2yj3_A 263 Copper-transporting ATPase; hydrolase, P-type ATPa 5e-21
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 5e-18
3a1c_A 287 Probable copper-exporting P-type ATPase A; ATP-bin 5e-18
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 1e-17
3skx_A 280 Copper-exporting P-type ATPase B; P1B-ATPase, ATP 2e-17
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 2e-12
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 2e-11
2kmv_A185 Copper-transporting ATPase 1; menkes, nucleotide b 7e-10
2arf_A165 Wilson disease ATPase; P-type ATPase,ATP7B, copper 9e-10
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 8e-09
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 9e-09
1svj_A156 Potassium-transporting ATPase B chain; alpha-beta 3e-04
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736 Back     alignment and structure
 Score =  169 bits (430), Expect = 2e-45
 Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 31/293 (10%)

Query: 245 VPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNL 304
           V + +V VG  + V  GE +PVD EV +G + +    +TGE  P+  +   ++ G   N 
Sbjct: 239 VSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQ 298

Query: 305 DGRMILKATKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIG 364
            G  ++KA    +++ L RIVQ+  +AQ ++  +QR  D      S   V   + +A++ 
Sbjct: 299 TGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLAD----TVSGWFVPAVILVAVLS 354

Query: 365 PFLFKWSFIGTSVCRGSVYRALGLMVA----ASPCALAVA-PLAYATAISSCARKGILLK 419
            F+  W+ +G      ++   L   V+    A PCAL +A P++    +   A+ G+L+K
Sbjct: 355 -FIV-WALLGPQ---PALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIK 409

Query: 420 GGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCCIPNCEKEAL 479
             + L+ +   +T+  DKTGTLT G      I            T D        E  AL
Sbjct: 410 NAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV-----------TDDFV------EDNAL 452

Query: 480 AVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVL 532
           A+AAA+E  + HP+  A+V  +  K L   S++ FE   G+G+   V+G  V 
Sbjct: 453 ALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVA 505
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723 Back     alignment and structure
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645 Back     alignment and structure
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Length = 263 Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Length = 287 Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113 Back     alignment and structure
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Length = 280 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A* Length = 185 Back     alignment and structure
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A Length = 165 Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A* Length = 156 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
3rfu_A 736 Copper efflux ATPase; alpha helical, CPC, CXXC, AT 100.0
3j08_A 645 COPA, copper-exporting P-type ATPase A; copper tra 100.0
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 100.0
1mhs_A 920 Proton pump, plasma membrane ATPase; ION transport 100.0
2zxe_A 1028 Na, K-ATPase alpha subunit; membrane protein, ION 100.0
3b8c_A 885 ATPase 2, plasma membrane-type; P-type ATPase, pro 100.0
3ar4_A 995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 100.0
3ixz_A 1034 Potassium-transporting ATPase alpha; ION pump, H+, 100.0
2hc8_A113 PACS, cation-transporting ATPase, P-type; copper, 99.96
2kij_A124 Copper-transporting ATPase 1; actuator, menkes dis 99.95
2yj3_A 263 Copper-transporting ATPase; hydrolase, P-type ATPa 99.61
3a1c_A 287 Probable copper-exporting P-type ATPase A; ATP-bin 99.55
2kmv_A185 Copper-transporting ATPase 1; menkes, nucleotide b 99.48
2arf_A165 Wilson disease ATPase; P-type ATPase,ATP7B, copper 99.35
1svj_A156 Potassium-transporting ATPase B chain; alpha-beta 99.33
3skx_A 280 Copper-exporting P-type ATPase B; P1B-ATPase, ATP 99.28
4fe3_A 297 Cytosolic 5'-nucleotidase 3; substrate complex, HA 95.18
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Back     alignment and structure
Probab=100.00  E-value=1.4e-72  Score=635.57  Aligned_cols=402  Identities=23%  Similarity=0.371  Sum_probs=360.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCCCHHHHHHHHH
Q 009369          100 DLANFLREHLQLCCCAAALFLAAAACPYL---LPKPAIKPLQNAFLAVAFPLVGVSASLDALTDIAGGKVNIHVLMAFAA  176 (536)
Q Consensus       100 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~~~~L~~la~  176 (536)
                      ...+++++.+...+++++++++++....+   .+.+...|++++++++++++.||||+++||++++++++|||+|+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md~Lv~l~~  156 (736)
T 3rfu_A           77 EYLDMRRRFWIALMLTIPVVILEMGGHGLKHFISGNGSSWIQLLLATPVVLWGGWPFFKRGWQSLKTGQLNMFTLIAMGI  156 (736)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSSCSTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            45566677777888899998887653321   122345677888999999999999999999999999999999999999


Q ss_pred             HHHHHHh----------------------hhHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCCceEEEe-cCCC
Q 009369          177 FASIFMG----------------------NSLEGG-LLLAMFNLAHIAEEFFTSRAMVDVKELKENYPDSVLVLN-VDDD  232 (536)
Q Consensus       177 ~~s~~~g----------------------~~~~~~-~il~~~~l~~~le~~~~~ra~~~i~~L~~~~p~~a~Vir-~~~~  232 (536)
                      .++|+++                      .|++++ ++++++.++.++|.+.++|+.+.+++|.++.|++++++| +|  
T Consensus       157 ~~a~~~S~~~~~~~~~~~~~~~~~~~~~~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg--  234 (736)
T 3rfu_A          157 GVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDG--  234 (736)
T ss_dssp             HHHHHHHHHHHHCGGGSCSSSSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTE--
T ss_pred             HHHHHHHHHHHhcccccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC--
Confidence            9998853                      356655 666889999999999999999999999999999999998 55  


Q ss_pred             CCCCcCCceEEEEeccccccCCEEEEcCCCccCcCeEEEecceeeeeccccCCCceEecCCCCeecccceEeceeEEEEE
Q 009369          233 NLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGTATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRMILKA  312 (536)
Q Consensus       233 ~~~~~~~~~~~~V~~~~L~vGDiV~v~~Ge~IPaDgivl~G~~~Vdes~LTGEs~pv~K~~g~~V~aGt~~~~G~~~~~v  312 (536)
                              ++++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||.||+||+|.+|.++++|
T Consensus       235 --------~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~~VDES~LTGES~Pv~K~~gd~v~~Gt~~~~G~~~~~v  306 (736)
T 3rfu_A          235 --------SEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMKA  306 (736)
T ss_dssp             --------EEEEEETTTCCTTCEECCCSSEECCSCEEECSSCEEEECSSSTTCSSCEEECTTCEECTTCEEESCCCCEEE
T ss_pred             --------EEEEEEHhhCCCCCEEEECCCCcccccEEEEECceEeeecccCCccccEEeccCCcCCCceEeccceEEEEE
Confidence                    899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCccHHHHHHHHHHHhhhcCchhHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhhccccc-cchhhhHHHHHHHHHh
Q 009369          313 TKTWNESTLNRIVQLTEEAQLNKPKLQRWLDEFGEQYSKVVVVLSLAIALIGPFLFKWSFIGT-SVCRGSVYRALGLMVA  391 (536)
Q Consensus       313 ~~tG~~T~~~ki~~lv~~a~~~k~~lq~~~~~~~~~~~~~~l~la~~~~~i~~~~~~~~~~~~-~~~~~~~~~~i~vlv~  391 (536)
                      +++|.+|+++||++++++++.+|+|+|+.+|+++.+|++++++++++++++      |++.+. ..+..++.++++++++
T Consensus       307 ~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~------w~~~~~~~~~~~~l~~ai~vlvi  380 (736)
T 3rfu_A          307 LHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIV------WALLGPQPALSYGLIAAVSVLII  380 (736)
T ss_dssp             CCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHCSSSSTTHHHHHHHHHHHH
T ss_pred             EEechhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhCCCchHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999988888776433      333332 2366789999999999


Q ss_pred             hhhchhhhH-HHHHHHHHHHHHHCCcEEecchHHHhhccccEEEecCCCccccCceEEEEEEecCCccccccccCCcccC
Q 009369          392 ASPCALAVA-PLAYATAISSCARKGILLKGGQVLDALASCHTIAFDKTGTLTTGGLMFKAIEPIYGHWIRSKKTHDISCC  470 (536)
Q Consensus       392 a~P~aL~la-p~a~~~~i~~~a~~gilvk~~~~lE~Lg~v~~I~fDKTGTLT~g~m~v~~i~~~~~~~~~~~~~~~~~~~  470 (536)
                      +|||+|+++ |+++..++.+++++|+++|+++++|.||++|+||||||||||+|+|+|++++ .++.+            
T Consensus       381 acPcaL~la~p~a~~~~~~~~a~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~-~~~~~------------  447 (736)
T 3rfu_A          381 ACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV-TDDFV------------  447 (736)
T ss_dssp             HCCSTHHHHHHHHHHHHHHHHHHTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEE-ESSSC------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhcceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEE-ecCCC------------
Confidence            999999998 9999999999999999999999999999999999999999999999999998 44443            


Q ss_pred             CCCCHHHHHHHHHHHhcCCCChHHHHHHHhHhCCCCCCCCCCceeeecCCeEEEEEcCEEeeec
Q 009369          471 IPNCEKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIEVLKN  534 (536)
Q Consensus       471 ~~~~~~~~l~~aa~~e~~s~HPia~AIv~~a~~~~~~~~~~~~~~~~~G~Gv~a~v~g~~~~~~  534 (536)
                          +++++.+++++|+.|+||+++||+++++++++....++++++.+|+|+.+.++|+++.++
T Consensus       448 ----~~~~l~~aa~le~~s~hPla~Aiv~~a~~~~~~~~~~~~f~~~~g~gv~~~~~g~~~~~G  507 (736)
T 3rfu_A          448 ----EDNALALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQVDGHHVAIG  507 (736)
T ss_dssp             ----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTCCCCCCCSCCCCCTTTEEEECSSSSCEEEE
T ss_pred             ----HHHHHHHHHHHhhcCCChHHHHHHHHHHhcCCCccCcccccccCCceEEEEECCEEEEEc
Confidence                789999999999999999999999999988887777889999999999999999888765
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Back     alignment and structure
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Back     alignment and structure
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Back     alignment and structure
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Back     alignment and structure
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A* Back     alignment and structure
>2arf_A Wilson disease ATPase; P-type ATPase,ATP7B, copper transport, nucleotide binding, ATP binding, hydrolase; NMR {Homo sapiens} PDB: 2koy_A Back     alignment and structure
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A* Back     alignment and structure
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Back     alignment and structure
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 536
d2b8ea2113 d.220.1.1 (A:435-547) Cation-transporting ATPase { 8e-06
d1wpga1115 b.82.7.1 (A:125-239) Calcium ATPase, transduction 6e-04
d2a29a1136 d.220.1.1 (A:316-451) Potassium-transporting ATPas 0.003
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 113 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 475 EKEALAVAAAMEKGTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTAT 525
           E+E L +AA  E+ + HPI  A+V  ++   +     ++ E   G G+ A 
Sbjct: 12  ERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVAD 62
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115 Back     information, alignment and structure
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B chain, KdpB {Escherichia coli [TaxId: 562]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d1wpga1115 Calcium ATPase, transduction domain A {Rabbit (Ory 99.89
d1wpga4 472 Calcium ATPase, transmembrane domain M {Rabbit (Or 99.47
d2b8ea2113 Cation-transporting ATPase {Archaeon Archaeoglobus 99.16
d2a29a1136 Potassium-transporting ATPase B chain, KdpB {Esche 98.82
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=9.1e-24  Score=181.93  Aligned_cols=99  Identities=17%  Similarity=0.239  Sum_probs=88.3

Q ss_pred             CceEEEecCCCCCCCcCCceEEEEeccccccCCEEEEcCCCccCcCeEEEecc---eeeeeccccCCCceEecCC-----
Q 009369          222 DSVLVLNVDDDNLPDVSDLAYRSVPVHDVEVGSYILVGAGEAVPVDCEVYQGT---ATITIEHLTGEVKPLEAKV-----  293 (536)
Q Consensus       222 ~~a~Vir~~~~~~~~~~~~~~~~V~~~~L~vGDiV~v~~Ge~IPaDgivl~G~---~~Vdes~LTGEs~pv~K~~-----  293 (536)
                      +.++|+|++++        ..++|+++||+|||+|.+++||+|||||+|++++   ..||||+|||||.|+.|.+     
T Consensus         1 e~~kV~R~g~~--------~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~   72 (115)
T d1wpga1           1 EMGKVYRADRK--------SVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPD   72 (115)
T ss_dssp             SEEEEEBSSCS--------SCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCC
T ss_pred             CceEEEECCCc--------eEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeecccccc
Confidence            35789998842        3578999999999999999999999999999755   3799999999999999964     


Q ss_pred             --------CCeecccceEeceeEEEEEeeecCccHHHHHHHHH
Q 009369          294 --------GDRIPGGARNLDGRMILKATKTWNESTLNRIVQLT  328 (536)
Q Consensus       294 --------g~~V~aGt~~~~G~~~~~v~~tG~~T~~~ki~~lv  328 (536)
                              .+.+|+||.+.+|.++++|++||.+|.+|||.+++
T Consensus        73 ~~~~~~~~~n~lf~GT~V~~G~~~~~V~~tG~~T~~G~i~~~i  115 (115)
T d1wpga1          73 PRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM  115 (115)
T ss_dssp             TTCCGGGCTTEECTTCEEEECEEEEEEEECGGGSHHHHHHHHH
T ss_pred             cccccccccceEEeccEEEeeeEEEEEEEEccccHHHHHHHhC
Confidence                    35699999999999999999999999999998764
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B chain, KdpB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure