Citrus Sinensis ID: 009413
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LFR1 | 552 | Probable peptide/nitrate | yes | no | 0.981 | 0.951 | 0.627 | 0.0 | |
| Q9SRI2 | 563 | Putative peptide/nitrate | no | no | 0.986 | 0.937 | 0.629 | 0.0 | |
| Q0WP01 | 557 | Probable peptide/nitrate | no | no | 0.936 | 0.899 | 0.408 | 1e-105 | |
| Q0WSZ6 | 561 | Probable peptide/nitrate | no | no | 0.949 | 0.905 | 0.394 | 1e-101 | |
| Q8RX67 | 538 | Probable peptide/nitrate | no | no | 0.936 | 0.931 | 0.378 | 2e-99 | |
| Q9C7U1 | 555 | Probable peptide/nitrate | no | no | 0.899 | 0.866 | 0.392 | 5e-99 | |
| Q8VZE2 | 557 | Probable peptide/nitrate | no | no | 0.958 | 0.921 | 0.389 | 5e-99 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.953 | 0.918 | 0.347 | 1e-94 | |
| Q9SK96 | 564 | Probable peptide/nitrate | no | no | 0.945 | 0.897 | 0.366 | 1e-94 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.930 | 0.866 | 0.349 | 1e-92 |
| >sp|Q9LFR1|PTR50_ARATH Probable peptide/nitrate transporter At5g14940 OS=Arabidopsis thaliana GN=At5g14940 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/548 (62%), Positives = 417/548 (76%), Gaps = 23/548 (4%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GLSKSC +LIVIAG ER+AFKGVASNLVTYLTDVVKMSNS AA TVN+W GFT MLPL
Sbjct: 9 GLSKSCALLIVIAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFS 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
AP ADSYWDR+ TILA S +Y VGLV LT TAF+ + STT IS FL+ SL L++LG
Sbjct: 69 APFADSYWDRFFTILASSSLYFVGLVGLTFTAFAGSRSTTKTISL--YFLYTSLSLVALG 126
Query: 122 QGGYNPSLQAFGADQLDSD-----DELPTTTDNQ-KSDKKSLFFKWWYFGVCSGSLLGVT 175
G NPSLQAFGADQLD D D P++ + + KS++K+ FF+WWYFGVC+GSLLGVT
Sbjct: 127 LGVLNPSLQAFGADQLDYDLDHDNDHEPSSENKEVKSNRKTQFFQWWYFGVCAGSLLGVT 186
Query: 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235
VM+YIQDTFGWV+GFAIPT +M+ F G +Y Y +D LK I++ IK
Sbjct: 187 VMAYIQDTFGWVIGFAIPTASMLLLIFLFLCGCGVYVY-ADPDLKAK-PFQRILEIIKER 244
Query: 236 ASKLKNSKIVLPIDNS-DTVELELQEQKPLCG---NKKLGSSKELDEDEYP-KSGNHLVK 290
+KI L D+ + +ELELQ+QKPLC + ++K L +D K+G ++
Sbjct: 245 VCG--RNKITLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLE 302
Query: 291 NAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSII 350
K++L+L PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIG NFKIPPATLQS IT+SII
Sbjct: 303 TVKLLLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSII 362
Query: 351 LLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSE 410
LLMP YDKILIP + + EKGI+V +RMGIGMFLSIIA++IAA+VE KRL++++
Sbjct: 363 LLMPFYDKILIPIAKKLTKNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKT 422
Query: 411 TV---PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467
T P+SI WLLPQYILLGISDIFTV+GMQEFFY+EVPV MRTMGFALYTSVFGVGSF+
Sbjct: 423 TPNLDPVSILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFV 482
Query: 468 SALLITVIEALSSSRNGR-SWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRT 526
SA LI++IE +SSR G+ +WF+DDM EARLD YYW+LA SA+S L+Y+++CK FKSR+
Sbjct: 483 SAALISIIETYTSSRGGKHNWFADDMSEARLDNYYWLLAFTSAISFLMYIVICKHFKSRS 542
Query: 527 DNLDNEAC 534
D D++ C
Sbjct: 543 D--DDDQC 548
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SRI2|PTR31_ARATH Putative peptide/nitrate transporter At3g01350 OS=Arabidopsis thaliana GN=At3g01350 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/553 (62%), Positives = 412/553 (74%), Gaps = 25/553 (4%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GLSKSC +LIVIAG ER+AFKGVASNLVTYLTDVVKMSNS AAKTVN+W GFTSMLPL
Sbjct: 9 GLSKSCALLIVIAGMERYAFKGVASNLVTYLTDVVKMSNSRAAKTVNTWAGFTSMLPLFS 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
APLAD+YWDR+ TILA S +Y VGLV LT TAF+ + S T ISS FL+ SLCL+S+G
Sbjct: 69 APLADTYWDRFFTILASSSVYFVGLVGLTWTAFAGSRSATKTISS--YFLYSSLCLVSIG 126
Query: 122 QGGYNPSLQAFGADQLDSD-----DELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTV 176
G NPSLQAFGADQLD D D + K+ +K+ FF+ WYFGVC+GSL+GVTV
Sbjct: 127 LGVLNPSLQAFGADQLDHDLDKNFDLSSGDQKDAKATRKTQFFQLWYFGVCTGSLMGVTV 186
Query: 177 MSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLK---CTVSLINIVQAIK 233
M+YIQDTFGWVLGFAIP I + S F G IY Y LK T I++ IK
Sbjct: 187 MAYIQDTFGWVLGFAIPGIVIFLSILVFMSGCGIYVYAPGARLKKKTTTTPFEKILKFIK 246
Query: 234 AAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLG------SSKELDEDEYPKSGNH 287
K ++ + + D +ELEL+E +PLC + +SK L++DE K+
Sbjct: 247 GRVVKQRSIYTLADEKDLDAMELELEE-RPLCKCETEDIETPSTTSKGLEDDESSKTVFS 305
Query: 288 LVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITV 347
+ N K+V++LFPIW MLLMFAVIFQ PATFFTKQG+TMKRNIGSNFKIPPATLQS IT+
Sbjct: 306 GIDNVKLVIRLFPIWMMLLMFAVIFQLPATFFTKQGVTMKRNIGSNFKIPPATLQSTITL 365
Query: 348 SIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407
SIILLMPLYDKILIP I + GI+VM+RMG+GMFLSIIA++IAAIVE KRL ++Q+
Sbjct: 366 SIILLMPLYDKILIPITKRIKKNGTGISVMERMGVGMFLSIIAIVIAAIVERKRLAISQK 425
Query: 408 YS-------ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSV 460
ETVPLSIFWLLPQYILLGISDIFTV+GMQEFFY+EVPVRMRTMGFALYTSV
Sbjct: 426 MKTLPDYDPETVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGFALYTSV 485
Query: 461 FGVGSFLSALLITVIEALSSSRNGR-SWFSDDMKEARLDLYYWVLALASALSLLLYVMLC 519
FGVGSF+SA LI+++EA SSS R +WF+DDM EARLD YYW+LAL S +S ++Y+ LC
Sbjct: 486 FGVGSFVSAALISIVEAYSSSTGDRQNWFADDMSEARLDKYYWLLALTSTISFVVYIFLC 545
Query: 520 KFFKSRTDNLDNE 532
KFFKS +D D +
Sbjct: 546 KFFKSSSDQGDEK 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/538 (40%), Positives = 329/538 (61%), Gaps = 37/538 (6%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+S +I + ERFA+ G++SNL+TYLT + S ++AA VN+W G S+LPL+ A +
Sbjct: 35 RSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFV 94
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALTSTAFSWA-WSTTNKISSSSA-----FLFWSLCLI 118
ADS+ R+ TILA S +Y+VGL LT +A + +N +SS S F +L L+
Sbjct: 95 ADSFLGRFRTILAASALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFFSALYLV 154
Query: 119 SLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS 178
+L QGG+ P +QAFGADQ D + ++ KS FF WWYFG+C G+L + V++
Sbjct: 155 ALAQGGHKPCVQAFGADQFDEKEP-------EECKAKSSFFNWWYFGMCFGTLTTLWVLN 207
Query: 179 YIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYK-SDETLKCTVSLINI-VQAIK--- 233
YIQD W LGF IP IAMV + G+ YR+ E V + N+ V A+K
Sbjct: 208 YIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWS 267
Query: 234 AAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAK 293
+A + ++ L + + + + K L S EL+E AK
Sbjct: 268 VSALDVAAAEERLGLVSCSSSQQFSFLNKALVAKNGSCSIDELEE-------------AK 314
Query: 294 VVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLM 353
VL+L PIW L++AV+F Q TFFTKQG TM+R+I +KI PATLQS I++SI++ +
Sbjct: 315 SVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFI 374
Query: 354 PLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS---- 409
P+YD++LIP GIT++QR+G G+FLS +AM++AA+VE KRL+ Y
Sbjct: 375 PIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDS 434
Query: 410 --ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467
TVP+S++WL+PQY+L GI+D+F ++G+QEFFY++VP +R++G ALY S+FG+G+FL
Sbjct: 435 PDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFL 494
Query: 468 SALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525
S+ +I++IE +S SWF++++ +A LD +YW+LA S + L Y+ + K + S+
Sbjct: 495 SSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASYLYVAKSYVSK 552
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/542 (39%), Positives = 325/542 (59%), Gaps = 34/542 (6%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ +I + ERFA G+ SNL++YLT + S + AA VN+W G +++LPL+
Sbjct: 31 GRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLG 90
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFL----FWSLCL 117
A +AD++ RY TI+ SFIYV+GL LT +AF + T SS S+FL F+SL L
Sbjct: 91 AFVADAFLGRYITIIIASFIYVLGLAFLTLSAFLIP-NNTEVTSSPSSFLNALFFFSLYL 149
Query: 118 ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177
+++GQ G+ P +QAFGADQ D + Q++ +S FF WWY +C+G L + V+
Sbjct: 150 VAIGQSGHKPCVQAFGADQFDEKNP-------QENSDRSSFFNWWYLSMCAGIGLAILVV 202
Query: 178 SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAAS 237
YIQ+ W LGF IP + MV S F G + YR+ + T I + A
Sbjct: 203 VYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEETNPFTRIGRVFFVA-- 260
Query: 238 KLKNSKIVLPIDNSDTVELEL------QEQKPLCG--NKKLGSSKELDEDEYPKSGNHLV 289
KN ++ ++SD ++EL QE NK L + DE E V
Sbjct: 261 -FKNQRL----NSSDLCKVELIEANRSQESPEELSFLNKALLVPNDSDEGEVACKSRD-V 314
Query: 290 KNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSI 349
++A +++L P+W L +A+ F Q TFFTKQG+TM+R I +IPPA+LQ I++SI
Sbjct: 315 EDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISI 374
Query: 350 ILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS 409
+L +P+YD++L+P I + GIT ++R+G GM L+ + M++AA+VE+KRLE ++Y
Sbjct: 375 VLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYG 434
Query: 410 ------ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGV 463
T+P+SI+WL PQY+LLG++D+ T++GMQEFFY++VP +R++G A+Y S GV
Sbjct: 435 LIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGV 494
Query: 464 GSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFK 523
GS LS+LLI +I+ + G SWF+ ++ A LD +YW+LA+ SA+ ++ + K +
Sbjct: 495 GSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAVVSAVGFFTFLFISKSYI 554
Query: 524 SR 525
R
Sbjct: 555 YR 556
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 200/529 (37%), Positives = 316/529 (59%), Gaps = 28/529 (5%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
KS ++IV+ ERFA+ G+ASNL+ YLT + S ++AA VN+W G + LPL+ L
Sbjct: 30 KSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAFLPLLGGFL 89
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGG 124
ADSY R+ TI+ S +Y++GL L+ + + + + F+SL L+++GQGG
Sbjct: 90 ADSYLGRFRTIIISSSLYILGLGLLSFSTMIPSHQSKDSNQLQETIFFFSLYLVAIGQGG 149
Query: 125 YNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF 184
YNP ++ FGADQ D +D ++++ KS FF W FG C L V +YIQ+
Sbjct: 150 YNPCIKVFGADQFDGND-------HKEARDKSSFFNWLMFGNCISILTTRLVSTYIQENL 202
Query: 185 GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKI 244
W LGF IP+++M+ S F G+ YR+ ++ K + + LKN +
Sbjct: 203 SWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKN----PFARISRVFMEALKNRRQ 258
Query: 245 V-LPIDNSDTVE----LELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLF 299
L I N++ E L Q K + S EL E ++ AK VL+L
Sbjct: 259 PDLDIANANANETLLLLAHQSSKQFRFLDRAAISCELAE----------IEEAKAVLRLI 308
Query: 300 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKI 359
PIW +++ ++ Q TFFTKQG TM R+I +P ATLQS I +S+++ +P+YD++
Sbjct: 309 PIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRL 368
Query: 360 LIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWL 419
L+PF + GIT +QR+G G+FLSI+AM++AA+VETKRL+ + ++P+S++WL
Sbjct: 369 LVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARD-ELSIPMSVWWL 427
Query: 420 LPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALS 479
+PQY++ G+SD+FT++G+QEFFY +VP +R++G AL S++G G++LS+ +I+VI+ ++
Sbjct: 428 IPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKIT 487
Query: 480 SSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK-FFKSRTD 527
+ RSWF +D+ +A LD +YW+LA + Y+ K + SR++
Sbjct: 488 NQYGQRSWFDNDLDQAHLDYFYWLLACLGFIGFAFYLWFAKSYVYSRSN 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 204/520 (39%), Positives = 302/520 (58%), Gaps = 39/520 (7%)
Query: 17 ERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL 76
E+FA+ G+ASNL+TY T+ + S + AA VN W G + LPL+ +ADS+ R+ TIL
Sbjct: 51 EKFAYFGIASNLITYFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTIL 110
Query: 77 AFSFIYVVGLVALTSTAFSWAWSTTNKISSSSA------FLFWSLCLISLGQGGYNPSLQ 130
S Y++GL LT +A + + S F +L LI+LG+GG+ L+
Sbjct: 111 LTSSFYIMGLGLLTFSATIPSLCNDQETRESCVSQVKVIIFFCALYLIALGEGGFKVCLR 170
Query: 131 AFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGF 190
AFGADQ D D +S KS +F W YF + G L V +Y+Q+ W LG+
Sbjct: 171 AFGADQFDEQDP-------NESKAKSSYFNWLYFAISIGILTTRLVTNYVQENLSWALGY 223
Query: 191 AIPTIAMVTSTAFFSFGSQIYRY----KSDETLKCTVSLINIVQAIKAAASKLKNSKIVL 246
AIP ++M+ + F G + YR+ + + K + I + AAA + +
Sbjct: 224 AIPCLSMMLALFLFLLGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAAARNRRQTP--- 280
Query: 247 PIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLL 306
SDT L E KK + LD ++ V+ AK VL L PIW L
Sbjct: 281 ----SDTCLLLPNES-----TKKF---RFLDR-AVISCDSYEVEEAKAVLSLIPIWLCSL 327
Query: 307 MFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHI 366
+F ++F Q TFFTKQG TM R+I S ++P ATLQ I+++I++ +P+YD++ +P
Sbjct: 328 VFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQCFISLAILVFIPIYDRLFVPIARS 387
Query: 367 IIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS------ETVPLSIFWLL 420
I R GIT +QR+ G+FLSII+M+IAA+VE KRL+ + + TVP+S+ WL+
Sbjct: 388 ITRKPAGITTLQRISTGIFLSIISMVIAALVEMKRLKTARDHGLVDSPKATVPMSVCWLI 447
Query: 421 PQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSS 480
PQYIL G+SD+FT++G+QEFFY EVP ++R+MG ALY S+ G+G+FLS+ +++VIE +S
Sbjct: 448 PQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVIEEATS 507
Query: 481 SRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520
SWFS+++ +A LD +YW+LA S+L+ + V K
Sbjct: 508 QSGQVSWFSNNLNQAHLDYFYWLLACLSSLAFIFTVYFAK 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 211/542 (38%), Positives = 326/542 (60%), Gaps = 29/542 (5%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ + +I + ERFA+ G+ SNL++YLT + S + AA VN+W G ++LP++
Sbjct: 31 GRWRAALFIIGVEVAERFAYYGIGSNLISYLTGPLGESTAVAAANVNAWSGIATLLPVLG 90
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAF---SWAWSTTNKISSSSAFLFWSLCLI 118
A +AD++ RY TI+ S IYV+GL LT +AF + T++ S + F+SL L+
Sbjct: 91 AFVADAFLGRYRTIIISSLIYVLGLAFLTLSAFLIPNTTEVTSSTSSFLNVLFFFSLYLV 150
Query: 119 SLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS 178
++GQ G+ P +QAFGADQ D D +KSD+ S FF WWY + +G + V+
Sbjct: 151 AIGQSGHKPCVQAFGADQFDEKD------SQEKSDRSS-FFNWWYLSLSAGICFAILVVV 203
Query: 179 YIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASK 238
YIQ+ F W GF IP + MV S F G +IYRY + I + A
Sbjct: 204 YIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRHEEEINPFTRIGRVFFVA--- 260
Query: 239 LKNSKIVLPIDNSDTVELELQ----EQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKV 294
LKN ++ +SD ++EL+ +K NK L + + E S + V++A
Sbjct: 261 LKNQRL----SSSDLCKVELEANTSPEKQSFFNKALLVPNDSSQGE-NASKSSDVEDATA 315
Query: 295 VLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMP 354
+++L P+W L +A+ + Q TFFTKQG+TM R I KIPPA+LQ I +SI+L +P
Sbjct: 316 LIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVP 375
Query: 355 LYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY------ 408
+YD++ +P +I + GIT ++R+G G+ LS I M+IAA+VE KRLE +++
Sbjct: 376 IYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQP 435
Query: 409 SETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLS 468
T+P+SI+WL+PQY+LLG++D++T++GMQEFFY++VP +R++G ALY S GVGS LS
Sbjct: 436 EATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVGSLLS 495
Query: 469 ALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK-FFKSRTD 527
+LLI++I+ + G SWF+ ++ A LD +YW+LA+ SA+ ++ + K + R D
Sbjct: 496 SLLISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAIVSAVGFFTFLFISKSYIYRRVD 555
Query: 528 NL 529
+
Sbjct: 556 RV 557
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/556 (34%), Positives = 314/556 (56%), Gaps = 46/556 (8%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+ + +IV+ ERFAF G+ASNL+T+LT+ + S ++AAK +N+W G + M P++ A L
Sbjct: 17 NAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFL 76
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGG 124
ADS R+ T+L SFIY++G+V L + A K+ F +L ++++G+GG
Sbjct: 77 ADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREKV------FFMALYVMAVGEGG 130
Query: 125 YNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF 184
+ P + F ADQ + ++ K+ FF +WY + S + V + +IQ+
Sbjct: 131 HKPCVMTFAADQFGE-------ANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERV 183
Query: 185 GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKI 244
W LGF+I ++V + F G YR + + + Q + AA K + S
Sbjct: 184 SWSLGFSIIAGSVVIAIVIFLIGIPKYR----KQVPVGSPFTRVAQVMVAALKKWRLSST 239
Query: 245 V----LPIDNSDTVELEL--QEQKPLCGN----KKLGSSKELDEDEYPKSGN-------H 287
L + D +LE Q L + L + +DE ++ K+ N +
Sbjct: 240 RHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRNPWRLCTVN 299
Query: 288 LVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITV 347
V+ K++L+L PIW L+MF Q TFF KQG M R IG++F IPPA QS + V
Sbjct: 300 QVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGV 359
Query: 348 SIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407
+I++L+PLYD++ +P + I GIT +QR+G+G+F++ M+I +VE KRL++ +
Sbjct: 360 TILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARD 419
Query: 408 YS------ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVF 461
+ E VP+S WLLPQYIL+GI D+FT++GMQE FY+++P MR++G A++ SV
Sbjct: 420 HGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVV 479
Query: 462 GVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKF 521
GVGSF+S +I+ ++ +S S +G W +++ A LD YYW++A +A+SL Y+ +
Sbjct: 480 GVGSFVSTGIISTVQTISKS-HGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANH 538
Query: 522 F-----KSRTDNLDNE 532
F + + D++++E
Sbjct: 539 FLYKKLQDKDDDVESE 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 198/540 (36%), Positives = 313/540 (57%), Gaps = 34/540 (6%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+S +I + ERFA+ G+ SNL+TYLT + S ++AA VN+W G S+LP++ A +
Sbjct: 35 RSAWYIIGVEVGERFAYFGIGSNLITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFI 94
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTT-----NKISSSSAFLFW------ 113
AD+Y RY TI+ S IY++GL LT ++ + N+ +S+ F FW
Sbjct: 95 ADAYLGRYRTIVVASLIYILGLGLLTLSSILILMGLSEQRQHNRNASAKPF-FWVNILFF 153
Query: 114 -SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLL 172
SL L+++GQGG+ P +QAFGADQ D D ++ + FF WW+ + +G L
Sbjct: 154 CSLYLVAIGQGGHKPCVQAFGADQFD-------VGDPKERISRGSFFNWWFLSLSAGITL 206
Query: 173 GVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAI 232
+ V+ Y+QD W LGF IP + MV + A F FG + YRY + + I +
Sbjct: 207 SIIVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDREGKNNAFARIGRVF 266
Query: 233 KAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKEL-DEDEYPKSGNHLVKN 291
A KN K+ L + + +LE+ K G + + L E + V++
Sbjct: 267 LVA---FKNRKLKL----THSGQLEVGSYKKCKGQLEFLAKALLPGEGGVEPCSSRDVED 319
Query: 292 AKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIIL 351
A +++L PIW ++ + + Q ATFFTKQG+T+ R I F+IPPA+ Q+ I +SI +
Sbjct: 320 AMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPASFQALIGLSIFI 379
Query: 352 LMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS-- 409
+P Y+++ +P +I + GIT++QR+G GM LS + M++AA+VE KRLE +++
Sbjct: 380 SVPTYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALVEMKRLETAKEHGLV 439
Query: 410 ----ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGS 465
T+P+SI+W +PQY+LLG+ D+F+++G QEFFY++VP +R++G AL S G+ S
Sbjct: 440 DRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLAS 499
Query: 466 FLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525
FLS LITVI + G SWF+ ++ A +D +YW+LA +A+ L +++L + + R
Sbjct: 500 FLSGFLITVINWATGKNGGDSWFNTNLNRAHVDYFYWLLAAFTAIGFLAFLLLSRLYVYR 559
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 190/543 (34%), Positives = 307/543 (56%), Gaps = 45/543 (8%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ + +I I ER ++ G+A+NLV YLT ++ A + VN W G T+++PL+
Sbjct: 40 GAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLG 99
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNK------ISSSSAFLFWSL 115
+AD+Y RY+T+L + IY++GLV LT + F ++ + F ++
Sbjct: 100 GFIADAYLGRYATVLVATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAI 159
Query: 116 CLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175
LIS+G GG+ PSL++FGADQ D D ++ K FF WW +C+G L VT
Sbjct: 160 YLISIGTGGHKPSLESFGADQFDDDHV-------EERKMKMSFFNWWNVSLCAGILTAVT 212
Query: 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235
++YI+D GW + I T+ M S F G YRY++ T I+Q AA
Sbjct: 213 AVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLT----PILQVFVAA 268
Query: 236 ASKLKNSKIVLPIDNS---DTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHL---- 288
+K + P D S + + E + LC + L K LD+ + N L
Sbjct: 269 IAK---RNLPYPSDPSLLHEVSKTEFTSGRLLCHTEHL---KFLDKAAIIEDKNPLALEK 322
Query: 289 -----------VKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIP 337
V+ K+++ + PIW L F + Q +TFF KQ +TM R+IG F +P
Sbjct: 323 QSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIG-GFTVP 381
Query: 338 PATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397
PA++ + +++I+ + +Y+K+L+P + I R ++GI ++QR+G GM S+I MIIAA+V
Sbjct: 382 PASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALV 441
Query: 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY 457
E +RL+ + + P+S+ WL PQ++++G +D FT++G+QE+FY++VP MR++G A Y
Sbjct: 442 EKQRLD---RTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFY 498
Query: 458 TSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVM 517
SV G SFL+ LLIT ++ L+ + +G+SWF D+ +RLD +YW LA A ++ ++V+
Sbjct: 499 LSVIGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVI 558
Query: 518 LCK 520
+ K
Sbjct: 559 VAK 561
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| 224116474 | 540 | predicted protein [Populus trichocarpa] | 0.975 | 0.966 | 0.75 | 0.0 | |
| 255552740 | 536 | amino acid permease, putative [Ricinus c | 0.983 | 0.981 | 0.718 | 0.0 | |
| 224076868 | 540 | predicted protein [Populus trichocarpa] | 0.977 | 0.968 | 0.726 | 0.0 | |
| 359488751 | 533 | PREDICTED: probable peptide/nitrate tran | 0.973 | 0.977 | 0.694 | 0.0 | |
| 296087733 | 549 | unnamed protein product [Vitis vinifera] | 0.971 | 0.947 | 0.693 | 0.0 | |
| 356550329 | 540 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.970 | 0.684 | 0.0 | |
| 449459494 | 560 | PREDICTED: probable peptide/nitrate tran | 0.975 | 0.932 | 0.663 | 0.0 | |
| 356571955 | 540 | PREDICTED: probable peptide/nitrate tran | 0.973 | 0.964 | 0.676 | 0.0 | |
| 357496163 | 538 | Peptide transporter family [Medicago tru | 0.968 | 0.962 | 0.657 | 0.0 | |
| 297811629 | 554 | proton-dependent oligopeptide transport | 0.979 | 0.945 | 0.627 | 0.0 |
| >gi|224116474|ref|XP_002331906.1| predicted protein [Populus trichocarpa] gi|222874578|gb|EEF11709.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/540 (75%), Positives = 455/540 (84%), Gaps = 18/540 (3%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GL+KSC +LIVIAG ERFAFKGVASNLVTYLTDVVKMSNS+AAKTVN+WCGFTSMLPL++
Sbjct: 9 GLNKSCFLLIVIAGMERFAFKGVASNLVTYLTDVVKMSNSAAAKTVNNWCGFTSMLPLLV 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
A LADS WDRYSTIL SFIYVVGLVALTSTA SWA TNKISSS +LFWSLCLISLG
Sbjct: 69 ASLADS-WDRYSTILTSSFIYVVGLVALTSTALSWARHPTNKISSS--YLFWSLCLISLG 125
Query: 122 QGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
QGGYNPSLQAFGADQ+ +DDELP+T D QKS+KKSLFF+WWYFGVC GSL GVTVMSYIQ
Sbjct: 126 QGGYNPSLQAFGADQIANDDELPSTKDEQKSNKKSLFFQWWYFGVCGGSLAGVTVMSYIQ 185
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241
DTFGWVLGFAIPTIAM S F GS+IY YK D+ + S +IV++IK A SKL N
Sbjct: 186 DTFGWVLGFAIPTIAMGASILLFWCGSRIYAYKQDDAISERPSR-DIVRSIKEALSKLMN 244
Query: 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSG-NHLVKNAKVVLKLFP 300
S+I LP +N VELELQE KPLC N G++K L E+ P SG N+LV+N KVVL+L P
Sbjct: 245 SRITLPNNNPGVVELELQE-KPLCQNS--GNAKGLKEE--PCSGINYLVENGKVVLRLLP 299
Query: 301 IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKIL 360
IWTMLLMFAVIFQQPATFFTKQGMTMKRN+GS+FKIPPATLQSAITVSIILLMP YD +L
Sbjct: 300 IWTMLLMFAVIFQQPATFFTKQGMTMKRNVGSSFKIPPATLQSAITVSIILLMPFYDALL 359
Query: 361 IPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS------ET-VP 413
IPF +I R +KGI+V QRMGIGM LSIIAM+IAA+VETKRLE++++ ET VP
Sbjct: 360 IPFTRLITRDKKGISVTQRMGIGMVLSIIAMVIAALVETKRLEISRKMEVLDPKLETEVP 419
Query: 414 LSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLIT 473
LSIFWLLPQYILLGISDIFTV+GMQEFFY+EVPVRMRTMG ALYTSVFGVGSFLSALLI+
Sbjct: 420 LSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLIS 479
Query: 474 VIEALSSSRN-GRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNE 532
++E +SSR GRSWFSDDM+EAR D YYW+LAL S LSL+ YV+ CK F SR+ +LDNE
Sbjct: 480 LVEYFTSSRGKGRSWFSDDMREARFDKYYWLLALLSVLSLVFYVIFCKCFVSRSSDLDNE 539
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552740|ref|XP_002517413.1| amino acid permease, putative [Ricinus communis] gi|223543424|gb|EEF44955.1| amino acid permease, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/536 (71%), Positives = 451/536 (84%), Gaps = 10/536 (1%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G +KSC +LIVIAG ERFAFKGVASNLVTYLTDVVK+SNS+AAKTVN+WCGFTSMLPL++
Sbjct: 9 GFNKSCFLLIVIAGIERFAFKGVASNLVTYLTDVVKLSNSAAAKTVNNWCGFTSMLPLLV 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
A LADS WD++ TILA S++YVVGL+ALTSTA +WAW NK SS FL+WSL LIS+G
Sbjct: 69 ASLADSCWDKHPTILASSYLYVVGLMALTSTALTWAWYPPNK--RSSTFLYWSLGLISVG 126
Query: 122 QGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
QGGYNPSLQAFGADQL+SDDELP+T D++KS+KKSLFF+WWYFGVC GSLLGVTVMSYIQ
Sbjct: 127 QGGYNPSLQAFGADQLESDDELPSTKDDRKSNKKSLFFQWWYFGVCGGSLLGVTVMSYIQ 186
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241
DTFGWVLGFAIPTIAM++S F GS++Y YK D ++VQAIK ASKL N
Sbjct: 187 DTFGWVLGFAIPTIAMISSIVIFCCGSRVYAYKQDLG-DDKRHFRDMVQAIKELASKLGN 245
Query: 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI 301
KI+LP NS+ +ELELQE +PLC + GS K L+ + P+SG +L++NAKVVL+L PI
Sbjct: 246 CKIILPSGNSEVLELELQE-RPLCPDNS-GSIKSLNSN--PRSGTYLLENAKVVLRLVPI 301
Query: 302 WTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILI 361
WTMLLMFAVIFQQPATFFTKQG+TM+R+IGS KIPPATLQS+ITVSIILLMPLYD I I
Sbjct: 302 WTMLLMFAVIFQQPATFFTKQGVTMERSIGSKLKIPPATLQSSITVSIILLMPLYDTIFI 361
Query: 362 PFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ--YSETVPLSIFWL 419
P +I R +KGI VMQRMGIGM LSIIAMIIAA+VE KR+ ++++ +SETVPLSIFWL
Sbjct: 362 PITRLITRDKKGINVMQRMGIGMVLSIIAMIIAAVVERKRIMISREMPHSETVPLSIFWL 421
Query: 420 LPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALS 479
LPQYILLGISDIFTV+GMQEFFYNEVPVRM+TMG ALYTSVFGVGSF SA LI+VIEA +
Sbjct: 422 LPQYILLGISDIFTVVGMQEFFYNEVPVRMKTMGIALYTSVFGVGSFFSAFLISVIEAFT 481
Query: 480 SSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNEACK 535
SSR +SWF+DDM+EARLD YYW+LA SALS+L YV+LCKF+ S + +DN+ K
Sbjct: 482 SSRGTKSWFTDDMREARLDNYYWLLAFLSALSMLFYVILCKFYSS-SSGVDNQNSK 536
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224076868|ref|XP_002305027.1| predicted protein [Populus trichocarpa] gi|222847991|gb|EEE85538.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/538 (72%), Positives = 442/538 (82%), Gaps = 15/538 (2%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GL++SC +LIVIAG ERFAFKGVASNLVTYLTDVV MSNS+AAKTVN+WCGFTSMLPL++
Sbjct: 9 GLNRSCFLLIVIAGMERFAFKGVASNLVTYLTDVVMMSNSAAAKTVNNWCGFTSMLPLLV 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
A LADS WDRYSTIL+ SF+YVVGLVALTSTA +WA TN ISSS +LFWSLCLISLG
Sbjct: 69 ASLADS-WDRYSTILSSSFLYVVGLVALTSTALAWARHPTNNISSS--YLFWSLCLISLG 125
Query: 122 QGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
QGGYNPSLQAFGADQ+ +DDELP T D QKS+KKSLFF+WWYFGVC GSL GVTVMSYIQ
Sbjct: 126 QGGYNPSLQAFGADQIPNDDELPCTKDEQKSNKKSLFFQWWYFGVCGGSLAGVTVMSYIQ 185
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241
DTFGW LGFAIPTIAM S F GS+IY YK D+ + SL +I +AIK A SKL N
Sbjct: 186 DTFGWALGFAIPTIAMTASILLFWCGSRIYTYKQDDNISERSSL-DIFRAIKGAVSKLMN 244
Query: 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI 301
S+I L + D ELELQE KPLC N G++K L E N+LV+N KVVL+L PI
Sbjct: 245 SRITLSSNKPDVAELELQE-KPLCQNS--GNAKALMEKPVGDI-NYLVENGKVVLRLLPI 300
Query: 302 WTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILI 361
W+MLLMFAVIFQ PATFFTKQGMTMKRN+GS+FKIPPATLQS+ITVSIILLMP YD +LI
Sbjct: 301 WSMLLMFAVIFQLPATFFTKQGMTMKRNVGSSFKIPPATLQSSITVSIILLMPFYDALLI 360
Query: 362 PFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQ------QYSET-VPL 414
P +I R EKGI+V +RMGIGM LSIIAM IAA+VETKRLE+ Q Q ET VPL
Sbjct: 361 PLARLITRDEKGISVTERMGIGMVLSIIAMAIAALVETKRLEIGQKMEVVDQKMETEVPL 420
Query: 415 SIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITV 474
SIFWLLPQYILLGISDIFTV+GMQEFFY+EVPVRMRTMG ALYTSVFGVGSFLSALLI++
Sbjct: 421 SIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGIALYTSVFGVGSFLSALLISL 480
Query: 475 IEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNE 532
+E +SS G+SWFSDDM+EARLD YYW+LAL S LSL+ YV+ CK + SR+ +LDNE
Sbjct: 481 VEYFTSSTGGKSWFSDDMREARLDKYYWLLALLSVLSLIFYVVFCKCYVSRSSDLDNE 538
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488751|ref|XP_003633812.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/536 (69%), Positives = 436/536 (81%), Gaps = 15/536 (2%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GL+K CI+LIV+AG ERFAFKGV SNLVTYLTDVVKMSNS+AAKTVNSWCG TSML L++
Sbjct: 9 GLNKPCILLIVVAGMERFAFKGVVSNLVTYLTDVVKMSNSTAAKTVNSWCGLTSMLALLV 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
APLADSYW RYSTILA SF+Y++GL+ALTSTA W ++ S SS FLFWSL LISLG
Sbjct: 69 APLADSYWYRYSTILASSFLYIIGLLALTSTALVGTWIPEDRTSGSS-FLFWSLYLISLG 127
Query: 122 QGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
GGYNPSLQAFGADQL+++++LP T D + D KSLFF+WWYFG+CSGSLLGVTVMSYIQ
Sbjct: 128 LGGYNPSLQAFGADQLETEEDLPCTKDEKNPDSKSLFFQWWYFGICSGSLLGVTVMSYIQ 187
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241
DT GW +GFAIPTI M+ S AFFS G++ Y Y+ D + +L IVQAIKA SK+ N
Sbjct: 188 DTSGWGIGFAIPTIVMIASIAFFSCGTRFYTYRQDRDVNWK-TLETIVQAIKAITSKMMN 246
Query: 242 SKIVLPID-NSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFP 300
I LP + +S +ELELQE KPLC + K D E KSG +L ++ KVVL+LFP
Sbjct: 247 CGINLPANKSSHVIELELQE-KPLCRDTK-------DLAENHKSGIYLPESIKVVLRLFP 298
Query: 301 IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKIL 360
IWTMLLMFAVIFQQPATFFTKQGMTMKRNIG N IPPA LQSAITVSII+LMPLYDK+L
Sbjct: 299 IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGRNLLIPPAMLQSAITVSIIVLMPLYDKVL 358
Query: 361 IPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMN---QQYSETVPLSIF 417
IPF +I R EKGI VMQRMGIGM LSIIAM+IAA+VE KRL ++ + SETVPLSIF
Sbjct: 359 IPFTRLITRKEKGINVMQRMGIGMVLSIIAMVIAALVEKKRLSISSKLESQSETVPLSIF 418
Query: 418 WLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477
WLLPQYI+LGI+DIFTV+GMQEFFY EVP+RMRTMG ALY+SVFGVGSF+SA LI +IE
Sbjct: 419 WLLPQYIILGIADIFTVVGMQEFFYGEVPIRMRTMGIALYSSVFGVGSFMSAFLIWLIEI 478
Query: 478 LSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNEA 533
+SS + WFSDDM+EARLD YYW+LAL+S SLLLY++LCK++KSR++ LD+E+
Sbjct: 479 FTSSGGRQGWFSDDMREARLDKYYWLLALSSTFSLLLYMLLCKYYKSRSE-LDSES 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087733|emb|CBI34989.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/535 (69%), Positives = 434/535 (81%), Gaps = 15/535 (2%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GL+K CI+LIV+AG ERFAFKGV SNLVTYLTDVVKMSNS+AAKTVNSWCG TSML L++
Sbjct: 9 GLNKPCILLIVVAGMERFAFKGVVSNLVTYLTDVVKMSNSTAAKTVNSWCGLTSMLALLV 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
APLADSYW RYSTILA SF+Y++GL+ALTSTA W ++ S SS FLFWSL LISLG
Sbjct: 69 APLADSYWYRYSTILASSFLYIIGLLALTSTALVGTWIPEDRTSGSS-FLFWSLYLISLG 127
Query: 122 QGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
GGYNPSLQAFGADQL+++++LP T D + D KSLFF+WWYFG+CSGSLLGVTVMSYIQ
Sbjct: 128 LGGYNPSLQAFGADQLETEEDLPCTKDEKNPDSKSLFFQWWYFGICSGSLLGVTVMSYIQ 187
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241
DT GW +GFAIPTI M+ S AFFS G++ Y Y+ D + +L IVQAIKA SK+ N
Sbjct: 188 DTSGWGIGFAIPTIVMIASIAFFSCGTRFYTYRQDRDVNWK-TLETIVQAIKAITSKMMN 246
Query: 242 SKIVLPID-NSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFP 300
I LP + +S +ELELQE KPLC + K D E KSG +L ++ KVVL+LFP
Sbjct: 247 CGINLPANKSSHVIELELQE-KPLCRDTK-------DLAENHKSGIYLPESIKVVLRLFP 298
Query: 301 IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKIL 360
IWTMLLMFAVIFQQPATFFTKQGMTMKRNIG N IPPA LQSAITVSII+LMPLYDK+L
Sbjct: 299 IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGRNLLIPPAMLQSAITVSIIVLMPLYDKVL 358
Query: 361 IPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMN---QQYSETVPLSIF 417
IPF +I R EKGI VMQRMGIGM LSIIAM+IAA+VE KRL ++ + SETVPLSIF
Sbjct: 359 IPFTRLITRKEKGINVMQRMGIGMVLSIIAMVIAALVEKKRLSISSKLESQSETVPLSIF 418
Query: 418 WLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477
WLLPQYI+LGI+DIFTV+GMQEFFY EVP+RMRTMG ALY+SVFGVGSF+SA LI +IE
Sbjct: 419 WLLPQYIILGIADIFTVVGMQEFFYGEVPIRMRTMGIALYSSVFGVGSFMSAFLIWLIEI 478
Query: 478 LSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNE 532
+SS + WFSDDM+EARLD YYW+LAL+S SLLLY++LCK++KSR++ LD +
Sbjct: 479 FTSSGGRQGWFSDDMREARLDKYYWLLALSSTFSLLLYMLLCKYYKSRSE-LDTK 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550329|ref|XP_003543540.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/536 (68%), Positives = 434/536 (80%), Gaps = 12/536 (2%)
Query: 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLA 62
LSKSCI+LI IAG ERFAFKGVASNLVTYLTDVV +SNSSAAK VNSW GFTS++PL++A
Sbjct: 10 LSKSCILLIAIAGIERFAFKGVASNLVTYLTDVVNLSNSSAAKMVNSWVGFTSIMPLLVA 69
Query: 63 PLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQ 122
P+AD+YW +YSTI+ SF+Y VGL ALT+TA + +W N+ SSS SL LISLGQ
Sbjct: 70 PIADAYWRKYSTIMVSSFLYFVGLAALTTTALARSWHHKNRSMSSSFLSL-SLYLISLGQ 128
Query: 123 GGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182
GGYNPSLQAFGADQL ++ELP + +++ +KK+LFF+WWYFGVCSGSLLGVTVMSYIQD
Sbjct: 129 GGYNPSLQAFGADQLGEEEELPCSKEDKSCNKKTLFFQWWYFGVCSGSLLGVTVMSYIQD 188
Query: 183 TFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNS 242
TFGWVLGFAIP I+M+ S FS GS IY YK + L+ L NI QA+KA+A + +
Sbjct: 189 TFGWVLGFAIPAISMILSILIFSGGSPIYLYKEHDVLQAKKPLRNIFQAVKASALRCFHC 248
Query: 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW 302
+I LP D ++ VELELQE KPLC +KL S K+L++D PK G +L+ NAKV+++L PIW
Sbjct: 249 EITLPNDKTEVVELELQE-KPLC-PEKLESLKDLNKD--PKGGMYLLANAKVMVRLLPIW 304
Query: 303 TMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIP 362
TMLLMFAVIFQQPATFFTKQGMTMKRNIG+ FKIPPATLQSAIT+SIILLMPLYDKI IP
Sbjct: 305 TMLLMFAVIFQQPATFFTKQGMTMKRNIGAGFKIPPATLQSAITLSIILLMPLYDKIFIP 364
Query: 363 FIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY------SETVPLSI 416
+I R E+GI+VMQRMGIGM LSIIAMIIAA+VE +RLE+ Q SETVPLSI
Sbjct: 365 ITQVITRQERGISVMQRMGIGMVLSIIAMIIAALVEMRRLEIGSQMRSAGSQSETVPLSI 424
Query: 417 FWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIE 476
FWLLPQYILLGISDIFTV+GMQEFFY EVP MRTMG ALYTSVFGVGSF+SALLIT++E
Sbjct: 425 FWLLPQYILLGISDIFTVVGMQEFFYGEVPRHMRTMGIALYTSVFGVGSFVSALLITLVE 484
Query: 477 ALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNE 532
+SS+ SWF DDM EARLD YYW+LA S +SLLLY +LC+++ ++D+ DNE
Sbjct: 485 VYTSSKGIPSWFCDDMVEARLDSYYWLLAWLSTVSLLLYALLCRYYPKKSDS-DNE 539
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459494|ref|XP_004147481.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/546 (66%), Positives = 418/546 (76%), Gaps = 24/546 (4%)
Query: 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLA 62
LS SCI+LIV++G ERF FKGVASNLVTYLTDV+KMSNSSAAKTV+SWCGFTSMLPLV+A
Sbjct: 19 LSNSCILLIVVSGMERFVFKGVASNLVTYLTDVMKMSNSSAAKTVSSWCGFTSMLPLVVA 78
Query: 63 PLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQ 122
PLADSYWDRYSTIL +F+YV+GLVALTST + WS TN ++S+FLF SL LISLGQ
Sbjct: 79 PLADSYWDRYSTILGSAFLYVLGLVALTSTTLARTWSPTN---TASSFLFSSLYLISLGQ 135
Query: 123 GGYNPSLQAFGADQLDSDD-ELPT----TTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177
GGYNPSLQAFGADQLD DD ELPT T ++K KKSLFF+WWYFGVCSGSLLGVT+M
Sbjct: 136 GGYNPSLQAFGADQLDHDDAELPTINAKTPSDEKPKKKSLFFQWWYFGVCSGSLLGVTIM 195
Query: 178 SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSD--ETLKCTVSLINIVQAIKAA 235
SYIQD FGWVLGFAIP AMV+S A FS G++IYRYK D E + +++ KA
Sbjct: 196 SYIQDNFGWVLGFAIPMCAMVSSVALFSCGTKIYRYKRDVEEDEVEKRRFVKVMEIFKAT 255
Query: 236 ASKLKNSKIV----LPIDNS-DTVELELQEQKPLCGNKKLGSSKELDEDE----YPKSGN 286
AS+L + V L I S D VELELQE KPLC K + P+
Sbjct: 256 ASRLMCWRSVVTTTLSIHKSEDDVELELQETKPLCHENSGAIMKAMVNKNNTTIIPRERV 315
Query: 287 HLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAIT 346
+ K+VL+L PIWTMLLMFAVIFQQPATFFTKQGMTM+R IG++FKIPPATLQSAIT
Sbjct: 316 CVPHKVKLVLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMERTIGADFKIPPATLQSAIT 375
Query: 347 VSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQ 406
+SIILLMPLYDK+LIP + +KGITVMQRMGIGMFLS IAMI+AA++E KRL M +
Sbjct: 376 ISIILLMPLYDKVLIPITRLFTGTKKGITVMQRMGIGMFLSTIAMILAALIEAKRLTMTK 435
Query: 407 QYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSF 466
S LSI WLLPQYI+LGISDIFTV+GMQEFFY+EVPV MRT GFALY SVFGVGSF
Sbjct: 436 NASS---LSILWLLPQYIILGISDIFTVVGMQEFFYSEVPVSMRTTGFALYNSVFGVGSF 492
Query: 467 LSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRT 526
SA++I+V+E L+S +WFSD+MKEARLD YYW+LA S LS +LYV+ CK F RT
Sbjct: 493 CSAIMISVVELLTSVEGKPNWFSDNMKEARLDKYYWLLAFCSGLSFVLYVIWCKCF--RT 550
Query: 527 DNLDNE 532
+D E
Sbjct: 551 SRIDEE 556
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571955|ref|XP_003554136.1| PREDICTED: probable peptide/nitrate transporter At5g14940-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/532 (67%), Positives = 435/532 (81%), Gaps = 11/532 (2%)
Query: 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLA 62
L+KSCI+LI IAG ERFAFKGVASNLVTYLTDVV +SNSSAAK VNSW GFTS++PL++A
Sbjct: 10 LNKSCILLIAIAGIERFAFKGVASNLVTYLTDVVNLSNSSAAKMVNSWVGFTSIMPLLVA 69
Query: 63 PLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQ 122
P+AD+YW +YSTI+ SF+Y VGL ALT+TA + +W N+ + S +FL SL LISLGQ
Sbjct: 70 PIADAYWHKYSTIMVSSFLYFVGLAALTTTALARSWHHKNR-TMSFSFLSLSLYLISLGQ 128
Query: 123 GGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182
GGYNPSLQAFGADQL ++ELP + +++ + K+LFF+WWYFGVCSGSLLGVTVMSYIQD
Sbjct: 129 GGYNPSLQAFGADQLGEEEELPCSKEDKSCNTKTLFFQWWYFGVCSGSLLGVTVMSYIQD 188
Query: 183 TFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNS 242
TFGWVLGFAIP I+M+ S FS GS IY YK + L+ ++NI QAI+A+A + +
Sbjct: 189 TFGWVLGFAIPAISMILSILIFSGGSPIYLYKEHDVLQAKKPIMNIFQAIRASALRCFHC 248
Query: 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW 302
+I LP D S+ VELELQE KPLC +KL + K+L++D PKSG +L+ NAKV+++L PIW
Sbjct: 249 EITLPNDKSEVVELELQE-KPLC-PEKLETVKDLNKD--PKSGMYLLANAKVMVRLLPIW 304
Query: 303 TMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIP 362
TMLLMFAVIFQQPATFFTKQGMTMKRNIG++FKIPPATLQSAIT+SIILLMPLYDKI IP
Sbjct: 305 TMLLMFAVIFQQPATFFTKQGMTMKRNIGADFKIPPATLQSAITLSIILLMPLYDKIFIP 364
Query: 363 FIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY------SETVPLSI 416
+I R +KGI+VMQRMGIGM LSIIAMIIAA+VE +RL++ +Q SETVPLSI
Sbjct: 365 MTQVITRQDKGISVMQRMGIGMVLSIIAMIIAALVEMRRLDIGRQMRSAGSQSETVPLSI 424
Query: 417 FWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIE 476
FWLLPQYILLGISDIFTV+GMQEFFY EVP MRTMG ALYTSVFGVGSF+SALLIT++E
Sbjct: 425 FWLLPQYILLGISDIFTVVGMQEFFYGEVPRNMRTMGIALYTSVFGVGSFVSALLITLVE 484
Query: 477 ALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDN 528
+SS+ SWF DDM EA LD YYW+LA S +SLLLY +LC+++ ++D+
Sbjct: 485 VYTSSKGIPSWFCDDMVEAHLDSYYWLLAWLSTVSLLLYALLCRYYHKKSDS 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496163|ref|XP_003618370.1| Peptide transporter family [Medicago truncatula] gi|355493385|gb|AES74588.1| Peptide transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/535 (65%), Positives = 423/535 (79%), Gaps = 17/535 (3%)
Query: 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLA 62
LS SCI+LI G ERFAFKGVASNLVTYLTDVV +SNSSAAK VNSW GFTS++PL++A
Sbjct: 10 LSNSCILLI---GIERFAFKGVASNLVTYLTDVVDLSNSSAAKMVNSWVGFTSIMPLLVA 66
Query: 63 PLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQ 122
P+AD+YW +YSTI++ SF+YV+GL ALT+TA + +W N+ SSS SL LISLGQ
Sbjct: 67 PIADAYWAKYSTIMSSSFLYVMGLAALTTTALARSWHHKNRSMSSSFLSL-SLYLISLGQ 125
Query: 123 GGYNPSLQAFGADQLDSDDELP-TTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181
GGYNPSLQAFGADQL D+ELP + TD+ S+KK+LFF+WWYFGVC+GSL+GVTVMSYIQ
Sbjct: 126 GGYNPSLQAFGADQLGEDEELPCSNTDDTSSNKKALFFQWWYFGVCAGSLMGVTVMSYIQ 185
Query: 182 DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVS--LINIVQAIKAAASKL 239
DTFGWV+GFAIP I+M+ S FS GS IY YK + + ++IK +A K
Sbjct: 186 DTFGWVIGFAIPAISMLLSILIFSSGSSIYSYKEQDDDDLQDKKPFTKMFKSIKESALKC 245
Query: 240 KNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLF 299
+ +I LP D S+ VELELQE +PLC ++ S K +++D K L+ N KV++KL
Sbjct: 246 FHCEITLPNDKSENVELELQE-RPLC-HENCESIKVINKDS--KVSMCLLPNVKVMIKLL 301
Query: 300 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKI 359
PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAIT+SIILLMPLY++I
Sbjct: 302 PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITLSIILLMPLYNRI 361
Query: 360 LIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY------SETVP 413
IPF +I R EKGI VMQRMGIGM LSIIAMIIAA+VE KRL + +Q SE VP
Sbjct: 362 FIPFAQLITRQEKGINVMQRMGIGMVLSIIAMIIAALVEMKRLAIGRQMRSEGLLSEIVP 421
Query: 414 LSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLIT 473
+SIFWLLPQYILLGISDIFTV+GMQEFFY EVP MRTMG ALYTSVFGVGSF+SAL+IT
Sbjct: 422 ISIFWLLPQYILLGISDIFTVVGMQEFFYGEVPKNMRTMGIALYTSVFGVGSFVSALMIT 481
Query: 474 VIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDN 528
++E +SS+ SWFSDDM EARLD YYW+LA S++SLLLY +LCK++ +++++
Sbjct: 482 LVEVYTSSKGTPSWFSDDMVEARLDNYYWLLAWLSSISLLLYTLLCKYYYNKSES 536
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811629|ref|XP_002873698.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319535|gb|EFH49957.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/547 (62%), Positives = 413/547 (75%), Gaps = 23/547 (4%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GLSKSC +LIVIAG ER+AFKGVASNLVTYLTDVVKMSNS AA TVN+W GFT MLPL
Sbjct: 9 GLSKSCALLIVIAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFS 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLG 121
AP ADSYWDR+ TILA S +Y VGLV LT TA++ + STT IS FL+ SL L++LG
Sbjct: 69 APFADSYWDRFFTILASSSLYFVGLVGLTFTAYAGSRSTTKTISL--YFLYTSLSLVALG 126
Query: 122 QGGYNPSLQAFGADQLDSD-----DELPTTTDNQ-KSDKKSLFFKWWYFGVCSGSLLGVT 175
G NPSLQAFGADQLD D D P++ + + KS++K+ FF+WWYFGVC+GSLLGVT
Sbjct: 127 LGVLNPSLQAFGADQLDHDLDQGHDHEPSSENKEVKSNRKTQFFQWWYFGVCAGSLLGVT 186
Query: 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235
VM+YIQDTFGWV+GFAIPT +M+ F G +Y Y +D LK I+++IK
Sbjct: 187 VMAYIQDTFGWVIGFAIPTASMLLLIFLFLCGCGVYVY-ADPDLKAK-PFQRILESIKER 244
Query: 236 ASKLKNSKIVLPIDNS-DTVELELQEQKPLC------GNKKLGSSKELDEDEYPKSGNHL 288
+KI L D+ + +ELELQ+QKPLC N + D+ + K+G
Sbjct: 245 VCG--RNKITLVNDHDLNAMELELQDQKPLCNCSNTEANTTTTTKSLPDDHKSCKTGFSG 302
Query: 289 VKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVS 348
++ K++L+L PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIG NFKIPPATLQS IT+S
Sbjct: 303 LETVKLLLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLS 362
Query: 349 IILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY 408
IILLMP YDKILIP + + EKGI+V +RMGIGMFLSIIA++IAA+VE KRL++++
Sbjct: 363 IILLMPFYDKILIPIAKKLTKNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMM 422
Query: 409 SETV---PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGS 465
T PLSI WLLPQYILLGISDIFTV+GMQEFFY+EVPV MRTMGFALYTSVFGVGS
Sbjct: 423 KTTPNLDPLSILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGS 482
Query: 466 FLSALLITVIEALSSSRNGR-SWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524
F+SA LI++IE SSSR G+ +WF+DDM EARLD YYW+LA SA+S L+Y+++CK FKS
Sbjct: 483 FVSAALISIIETYSSSRGGKHNWFADDMTEARLDNYYWLLAFTSAISFLMYIVICKHFKS 542
Query: 525 RTDNLDN 531
R+D D
Sbjct: 543 RSDADDQ 549
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| TAIR|locus:2100262 | 563 | AT3G01350 [Arabidopsis thalian | 0.986 | 0.937 | 0.614 | 5e-163 | |
| TAIR|locus:2147840 | 552 | AT5G14940 [Arabidopsis thalian | 0.981 | 0.951 | 0.605 | 5.7e-162 | |
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.940 | 0.903 | 0.399 | 3.1e-99 | |
| TAIR|locus:2030326 | 557 | AT1G72120 [Arabidopsis thalian | 0.957 | 0.919 | 0.379 | 1.4e-96 | |
| TAIR|locus:2030316 | 538 | AT1G72130 [Arabidopsis thalian | 0.942 | 0.936 | 0.372 | 4.2e-95 | |
| TAIR|locus:4515102750 | 561 | AT1G72125 [Arabidopsis thalian | 0.964 | 0.919 | 0.380 | 5.3e-95 | |
| TAIR|locus:2206991 | 555 | AT1G72140 [Arabidopsis thalian | 0.867 | 0.836 | 0.393 | 5.1e-90 | |
| TAIR|locus:2009472 | 564 | AT1G22550 [Arabidopsis thalian | 0.945 | 0.897 | 0.361 | 1.6e-88 | |
| TAIR|locus:2065568 | 575 | AT2G37900 [Arabidopsis thalian | 0.936 | 0.871 | 0.35 | 1e-84 | |
| TAIR|locus:2009542 | 565 | AT1G22570 [Arabidopsis thalian | 0.949 | 0.899 | 0.350 | 1.7e-84 |
| TAIR|locus:2100262 AT3G01350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
Identities = 340/553 (61%), Positives = 399/553 (72%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GLSKSC +LIVIAG ER+AFKGVASNLVTYLTDVVKMSNS AAKTVN+W GFTSMLPL
Sbjct: 9 GLSKSCALLIVIAGMERYAFKGVASNLVTYLTDVVKMSNSRAAKTVNTWAGFTSMLPLFS 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSAFLFWSLCLISLG 121
APLAD+YWDR+ TILA S +Y VGLV L ISS FL+ SLCL+S+G
Sbjct: 69 APLADTYWDRFFTILASSSVYFVGLVGLTWTAFAGSRSATKTISSY--FLYSSLCLVSIG 126
Query: 122 QGGYNPSLQAFGADQLDSD-DE-LPTTTDNQKSDK---KSLFFKWWYFGVCSGSLLGVTV 176
G NPSLQAFGADQLD D D+ ++ +QK K K+ FF+ WYFGVC+GSL+GVTV
Sbjct: 127 LGVLNPSLQAFGADQLDHDLDKNFDLSSGDQKDAKATRKTQFFQLWYFGVCTGSLMGVTV 186
Query: 177 MSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLK---CTVSLINIVQAIK 233
M+YIQDTFGWVLGFAIP I + S F G IY Y LK T I++ IK
Sbjct: 187 MAYIQDTFGWVLGFAIPGIVIFLSILVFMSGCGIYVYAPGARLKKKTTTTPFEKILKFIK 246
Query: 234 AAASKLKNSKIVLPIDNSDTVELELQEQKPLCG------NKKLGSSKELDEDEYPKSGNH 287
K ++ + + D +ELEL+E +PLC +SK L++DE K+
Sbjct: 247 GRVVKQRSIYTLADEKDLDAMELELEE-RPLCKCETEDIETPSTTSKGLEDDESSKTVFS 305
Query: 288 LVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITV 347
+ N K+V++LFPIW MLLMFAVIFQ PATFFTKQG+TMKRNIGSNFKIPPATLQS IT+
Sbjct: 306 GIDNVKLVIRLFPIWMMLLMFAVIFQLPATFFTKQGVTMKRNIGSNFKIPPATLQSTITL 365
Query: 348 SIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407
SIILLMPLYDKILIP I + GI+VM+RMG+GMFLSIIA++IAAIVE KRL ++Q+
Sbjct: 366 SIILLMPLYDKILIPITKRIKKNGTGISVMERMGVGMFLSIIAIVIAAIVERKRLAISQK 425
Query: 408 ------YS-ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSV 460
Y ETVPLSIFWLLPQYILLGISDIFTV+GMQEFFY+EVPVRMRTMGFALYTSV
Sbjct: 426 MKTLPDYDPETVPLSIFWLLPQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGFALYTSV 485
Query: 461 FGVGSFLSALLITVIEALSSSRNGR-SWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLC 519
FGVGSF+SA LI+++EA SSS R +WF+DDM EARLD YYW+ Y+ LC
Sbjct: 486 FGVGSFVSAALISIVEAYSSSTGDRQNWFADDMSEARLDKYYWLLALTSTISFVVYIFLC 545
Query: 520 KFFKSRTDNLDNE 532
KFFKS +D D +
Sbjct: 546 KFFKSSSDQGDEK 558
|
|
| TAIR|locus:2147840 AT5G14940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 332/548 (60%), Positives = 401/548 (73%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
GLSKSC +LIVIAG ER+AFKGVASNLVTYLTDVVKMSNS AA TVN+W GFT MLPL
Sbjct: 9 GLSKSCALLIVIAGIERYAFKGVASNLVTYLTDVVKMSNSRAATTVNTWSGFTFMLPLFS 68
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSAFLFWSLCLISLG 121
AP ADSYWDR+ TILA S +Y VGLV L IS FL+ SL L++LG
Sbjct: 69 APFADSYWDRFFTILASSSLYFVGLVGLTFTAFAGSRSTTKTISLY--FLYTSLSLVALG 126
Query: 122 QGGYNPSLQAFGADQLDSD-----DELPTTTDNQ-KSDKKSLFFKWWYFGVCSGSLLGVT 175
G NPSLQAFGADQLD D D P++ + + KS++K+ FF+WWYFGVC+GSLLGVT
Sbjct: 127 LGVLNPSLQAFGADQLDYDLDHDNDHEPSSENKEVKSNRKTQFFQWWYFGVCAGSLLGVT 186
Query: 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235
VM+YIQDTFGWV+GFAIPT +M+ F G +Y Y +D LK I++ IK
Sbjct: 187 VMAYIQDTFGWVIGFAIPTASMLLLIFLFLCGCGVYVY-ADPDLKAK-PFQRILEIIKER 244
Query: 236 ASKLKNSKIVLPIDNS-DTVELELQEQKPLCG--NKKLGSS-KELDEDEYP-KSGNHLVK 290
+KI L D+ + +ELELQ+QKPLC N + ++ K L +D K+G ++
Sbjct: 245 VCG--RNKITLVNDHDLNAMELELQDQKPLCNCSNTEANTTTKSLPDDHKSCKTGFSGLE 302
Query: 291 NAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSII 350
K++L+L PIWTMLLMFAVIFQQPATFFTKQGMTMKRNIG NFKIPPATLQS IT+SII
Sbjct: 303 TVKLLLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSII 362
Query: 351 LLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSE 410
LLMP YDKILIP + + EKGI+V +RMGIGMFLSIIA++IAA+VE KRL++++
Sbjct: 363 LLMPFYDKILIPIAKKLTKNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKISKMMKT 422
Query: 411 TV---PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467
T P+SI WLLPQYILLGISDIFTV+GMQEFFY+EVPV MRTMGFALYTSVFGVGSF+
Sbjct: 423 TPNLDPVSILWLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSFV 482
Query: 468 SALLITVIEALSSSRNGR-SWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCKFFKSRT 526
SA LI++IE +SSR G+ +WF+DDM EARLD YYW+ Y+++CK FKSR+
Sbjct: 483 SAALISIIETYTSSRGGKHNWFADDMSEARLDNYYWLLAFTSAISFLMYIVICKHFKSRS 542
Query: 527 DNLDNEAC 534
D D++ C
Sbjct: 543 D--DDDQC 548
|
|
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 214/536 (39%), Positives = 318/536 (59%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+S +I + ERFA+ G++SNL+TYLT + S ++AA VN+W G S+LPL+ A +
Sbjct: 35 RSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFV 94
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXX-XXXNKISSSS----AFLFWS-LCLI 118
ADS+ R+ TILA S +Y+VGL L N +SS S F+S L L+
Sbjct: 95 ADSFLGRFRTILAASALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFFSALYLV 154
Query: 119 SLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS 178
+L QGG+ P +QAFGADQ D + P ++ KS FF WWYFG+C G+L + V++
Sbjct: 155 ALAQGGHKPCVQAFGADQFDEKE--P-----EECKAKSSFFNWWYFGMCFGTLTTLWVLN 207
Query: 179 YIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYK-SDETLKCTVSLINI-VQAIKA-A 235
YIQD W LGF IP IAMV + G+ YR+ E V + N+ V A+K +
Sbjct: 208 YIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWS 267
Query: 236 ASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVV 295
S L + + V +Q + + DE ++ AK V
Sbjct: 268 VSALD---VAAAEERLGLVSCSSSQQFSFLNKALVAKNGSCSIDE--------LEEAKSV 316
Query: 296 LKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPL 355
L+L PIW L++AV+F Q TFFTKQG TM+R+I +KI PATLQS I++SI++ +P+
Sbjct: 317 LRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFIPI 376
Query: 356 YDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS------ 409
YD++LIP GIT++QR+G G+FLS +AM++AA+VE KRL+ Y
Sbjct: 377 YDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPD 436
Query: 410 ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSA 469
TVP+S++WL+PQY+L GI+D+F ++G+QEFFY++VP +R++G ALY S+FG+G+FLS+
Sbjct: 437 ATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFLSS 496
Query: 470 LLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCKFFKSR 525
+I++IE +S SWF++++ +A LD +YW+ Y+ + K + S+
Sbjct: 497 FMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASYLYVAKSYVSK 552
|
|
| TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 206/543 (37%), Positives = 319/543 (58%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ + +I + ERFA+ G+ SNL++YLT + S + AA VN+W G ++LP++
Sbjct: 31 GRWRAALFIIGVEVAERFAYYGIGSNLISYLTGPLGESTAVAAANVNAWSGIATLLPVLG 90
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSAFL----FWSLCL 117
A +AD++ RY TI+ S IYV+GL A SS+S+FL F+SL L
Sbjct: 91 AFVADAFLGRYRTIIISSLIYVLGL-AFLTLSAFLIPNTTEVTSSTSSFLNVLFFFSLYL 149
Query: 118 ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177
+++GQ G+ P +QAFGADQ D D +KSD+ S FF WWY + +G + V+
Sbjct: 150 VAIGQSGHKPCVQAFGADQFDEKDS------QEKSDRSS-FFNWWYLSLSAGICFAILVV 202
Query: 178 SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAAS 237
YIQ+ F W GF IP + MV S F G +IYRY S + ++ + + A
Sbjct: 203 VYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRY-SKRRHEEEINPFTRIGRVFFVA- 260
Query: 238 KLKNSKIVLPIDNSDTVELELQE----QKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAK 293
LKN ++ +SD ++EL+ +K NK L + + E + V++A
Sbjct: 261 -LKNQRL----SSSDLCKVELEANTSPEKQSFFNKALLVPNDSSQGENASKSSD-VEDAT 314
Query: 294 VVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLM 353
+++L P+W L +A+ + Q TFFTKQG+TM R I KIPPA+LQ I +SI+L +
Sbjct: 315 ALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFV 374
Query: 354 PLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS---- 409
P+YD++ +P +I + GIT ++R+G G+ LS I M+IAA+VE KRLE +++
Sbjct: 375 PIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQ 434
Query: 410 --ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467
T+P+SI+WL+PQY+LLG++D++T++GMQEFFY++VP +R++G ALY S GVGS L
Sbjct: 435 PEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVGSLL 494
Query: 468 SALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCK-FFKSRT 526
S+LLI++I+ + G SWF+ ++ A LD +YW+ ++ + K + R
Sbjct: 495 SSLLISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAIVSAVGFFTFLFISKSYIYRRV 554
Query: 527 DNL 529
D +
Sbjct: 555 DRV 557
|
|
| TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 196/526 (37%), Positives = 305/526 (57%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
KS ++IV+ ERFA+ G+ASNL+ YLT + S ++AA VN+W G + LPL+ L
Sbjct: 30 KSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAFLPLLGGFL 89
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSAFLFWSLCLISLGQGG 124
ADSY R+ TI+ S +Y++GL L + F+SL L+++GQGG
Sbjct: 90 ADSYLGRFRTIIISSSLYILGLGLLSFSTMIPSHQSKDSNQLQETIFFFSLYLVAIGQGG 149
Query: 125 YNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF 184
YNP ++ FGADQ D +D + DK S FF W FG C L V +YIQ+
Sbjct: 150 YNPCIKVFGADQFDGNDH------KEARDKSS-FFNWLMFGNCISILTTRLVSTYIQENL 202
Query: 185 GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKI 244
W LGF IP+++M+ S F G+ YR+ ++ K I + A + +
Sbjct: 203 SWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKN-PFARISRVFMEALKNRRQPDL 261
Query: 245 VLPIDNSDTVELEL--QEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW 302
+ N++ L L Q K + S EL E ++ AK VL+L PIW
Sbjct: 262 DIANANANETLLLLAHQSSKQFRFLDRAAISCELAE----------IEEAKAVLRLIPIW 311
Query: 303 TMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIP 362
+++ ++ Q TFFTKQG TM R+I +P ATLQS I +S+++ +P+YD++L+P
Sbjct: 312 ITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRLLVP 371
Query: 363 FIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQ 422
F + GIT +QR+G G+FLSI+AM++AA+VETKRL+ + ++P+S++WL+PQ
Sbjct: 372 FARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARD-ELSIPMSVWWLIPQ 430
Query: 423 YILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSR 482
Y++ G+SD+FT++G+QEFFY +VP +R++G AL S++G G++LS+ +I+VI+ +++
Sbjct: 431 YVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKITNQY 490
Query: 483 NGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCK-FFKSRTD 527
RSWF +D+ +A LD +YW+ Y+ K + SR++
Sbjct: 491 GQRSWFDNDLDQAHLDYFYWLLACLGFIGFAFYLWFAKSYVYSRSN 536
|
|
| TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 205/539 (38%), Positives = 314/539 (58%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ +I + ERFA G+ SNL++YLT + S + AA VN+W G +++LPL+
Sbjct: 31 GRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLGQSTAVAAANVNAWSGISTILPLLG 90
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSAFL----FWSLCL 117
A +AD++ RY TI+ SFIYV+GL A SS S+FL F+SL L
Sbjct: 91 AFVADAFLGRYITIIIASFIYVLGL-AFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYL 149
Query: 118 ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177
+++GQ G+ P +QAFGADQ D + P + SD+ S FF WWY +C+G L + V+
Sbjct: 150 VAIGQSGHKPCVQAFGADQFDEKN--P----QENSDRSS-FFNWWYLSMCAGIGLAILVV 202
Query: 178 SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAAS 237
YIQ+ W LGF IP + MV S F G + YR+ + T I + A
Sbjct: 203 VYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEETNPFTRIGRVFFVAFK 262
Query: 238 KLK-NSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYP-KSGNHLVKNAKVV 295
+ NS + ++ + + ++ NK L + DE E KS + V++A +
Sbjct: 263 NQRLNSSDLCKVELIEANRSQESPEELSFLNKALLVPNDSDEGEVACKSRD--VEDATAL 320
Query: 296 LKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPL 355
++L P+W L +A+ F Q TFFTKQG+TM+R I +IPPA+LQ I++SI+L +P+
Sbjct: 321 VRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPI 380
Query: 356 YDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS------ 409
YD++L+P I + GIT ++R+G GM L+ + M++AA+VE+KRLE ++Y
Sbjct: 381 YDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPK 440
Query: 410 ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSA 469
T+P+SI+WL PQY+LLG++D+ T++GMQEFFY++VP +R++G A+Y S GVGS LS+
Sbjct: 441 TTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSS 500
Query: 470 LLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCK-FFKSRTD 527
LLI +I+ + G SWF+ ++ A LD +YW+ ++ + K + R D
Sbjct: 501 LLIYLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAVVSAVGFFTFLFISKSYIYRRVD 559
|
|
| TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 198/503 (39%), Positives = 294/503 (58%)
Query: 17 ERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL 76
E+FA+ G+ASNL+TY T+ + S + AA VN W G + LPL+ +ADS+ R+ TIL
Sbjct: 51 EKFAYFGIASNLITYFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTIL 110
Query: 77 AFSFIYVVGLVALXXXXXXXXXXXXNK-----ISSSSAFLFW-SLCLISLGQGGYNPSLQ 130
S Y++GL L + +S +F+ +L LI+LG+GG+ L+
Sbjct: 111 LTSSFYIMGLGLLTFSATIPSLCNDQETRESCVSQVKVIIFFCALYLIALGEGGFKVCLR 170
Query: 131 AFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGF 190
AFGADQ D D P +S KS +F W YF + G L V +Y+Q+ W LG+
Sbjct: 171 AFGADQFDEQD--PN-----ESKAKSSYFNWLYFAISIGILTTRLVTNYVQENLSWALGY 223
Query: 191 AIPTIAMVTSTAFFSFGSQIYRYKSD----ETLKCTVSLINIVQAIKAAASKLKNSKIVL 246
AIP ++M+ + F G + YR+ + + K + I + AAA + +
Sbjct: 224 AIPCLSMMLALFLFLLGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAAARNRRQT---- 279
Query: 247 PIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLL 306
P SDT L E KK + LD ++ V+ AK VL L PIW L
Sbjct: 280 P---SDTCLLLPNES-----TKKF---RFLDRAVI-SCDSYEVEEAKAVLSLIPIWLCSL 327
Query: 307 MFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHI 366
+F ++F Q TFFTKQG TM R+I S ++P ATLQ I+++I++ +P+YD++ +P
Sbjct: 328 VFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQCFISLAILVFIPIYDRLFVPIARS 387
Query: 367 IIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS------ETVPLSIFWLL 420
I R GIT +QR+ G+FLSII+M+IAA+VE KRL+ + + TVP+S+ WL+
Sbjct: 388 ITRKPAGITTLQRISTGIFLSIISMVIAALVEMKRLKTARDHGLVDSPKATVPMSVCWLI 447
Query: 421 PQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSS 480
PQYIL G+SD+FT++G+QEFFY EVP ++R+MG ALY S+ G+G+FLS+ +++VIE +S
Sbjct: 448 PQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVIEEATS 507
Query: 481 SRNGRSWFSDDMKEARLDLYYWV 503
SWFS+++ +A LD +YW+
Sbjct: 508 QSGQVSWFSNNLNQAHLDYFYWL 530
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| TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 195/540 (36%), Positives = 305/540 (56%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+S +I + ERFA+ G+ SNL+TYLT + S ++AA VN+W G S+LP++ A +
Sbjct: 35 RSAWYIIGVEVGERFAYFGIGSNLITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFI 94
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXX-----NKISSSSAFLFW------ 113
AD+Y RY TI+ S IY++GL L N+ +S+ F FW
Sbjct: 95 ADAYLGRYRTIVVASLIYILGLGLLTLSSILILMGLSEQRQHNRNASAKPF-FWVNILFF 153
Query: 114 -SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLL 172
SL L+++GQGG+ P +QAFGADQ D D P ++ + S FF WW+ + +G L
Sbjct: 154 CSLYLVAIGQGGHKPCVQAFGADQFDVGD--P----KERISRGS-FFNWWFLSLSAGITL 206
Query: 173 GVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAI 232
+ V+ Y+QD W LGF IP + MV + A F FG + YRY + + I +
Sbjct: 207 SIIVVVYVQDNVNWALGFGIPCLFMVMALALFLFGRKTYRYPRGDREGKNNAFARIGRVF 266
Query: 233 KAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELD-EDEYPKSGNHLVKN 291
A KN K+ L + + +LE+ K G + + L E + V++
Sbjct: 267 LVA---FKNRKLKL----THSGQLEVGSYKKCKGQLEFLAKALLPGEGGVEPCSSRDVED 319
Query: 292 AKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIIL 351
A +++L PIW ++ + + Q ATFFTKQG+T+ R I F+IPPA+ Q+ I +SI +
Sbjct: 320 AMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPASFQALIGLSIFI 379
Query: 352 LMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS-- 409
+P Y+++ +P +I + GIT++QR+G GM LS + M++AA+VE KRLE +++
Sbjct: 380 SVPTYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALVEMKRLETAKEHGLV 439
Query: 410 ----ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGS 465
T+P+SI+W +PQY+LLG+ D+F+++G QEFFY++VP +R++G AL S G+ S
Sbjct: 440 DRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLAS 499
Query: 466 FLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCKFFKSR 525
FLS LITVI + G SWF+ ++ A +D +YW+ +++L + + R
Sbjct: 500 FLSGFLITVINWATGKNGGDSWFNTNLNRAHVDYFYWLLAAFTAIGFLAFLLLSRLYVYR 559
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| TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 189/540 (35%), Positives = 304/540 (56%)
Query: 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVL 61
G ++ + +I I ER ++ G+A+NLV YLT ++ A + VN W G T+++PL+
Sbjct: 40 GAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLG 99
Query: 62 APLADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNK---ISSSSAF---LFWSL 115
+AD+Y RY+T+L + IY++GLV L ++ + A F ++
Sbjct: 100 GFIADAYLGRYATVLVATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAI 159
Query: 116 CLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175
LIS+G GG+ PSL++FGADQ D DD + + +K K FF WW +C+G L VT
Sbjct: 160 YLISIGTGGHKPSLESFGADQFD-DDHV----EERKM--KMSFFNWWNVSLCAGILTAVT 212
Query: 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235
++YI+D GW + I T+ M S F G YRY++ T I+Q AA
Sbjct: 213 AVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTP----ILQVFVAA 268
Query: 236 ASKLKNSKIVLPIDNS---DTVELELQEQKPLCGNKKLG--SSKELDEDEYP-----KSG 285
+K +N + P D S + + E + LC + L + ED+ P +S
Sbjct: 269 IAK-RN--LPYPSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDKAAIIEDKNPLALEKQSP 325
Query: 286 NHL-----VKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPAT 340
L V+ K+++ + PIW L F + Q +TFF KQ +TM R+IG F +PPA+
Sbjct: 326 WRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPAS 384
Query: 341 LQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK 400
+ + +++I+ + +Y+K+L+P + I R ++GI ++QR+G GM S+I MIIAA+VE +
Sbjct: 385 MFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQ 444
Query: 401 RLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSV 460
RL+ + P+S+ WL PQ++++G +D FT++G+QE+FY++VP MR++G A Y SV
Sbjct: 445 RLDRT---NNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSV 501
Query: 461 FGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCK 520
G SFL+ LLIT ++ L+ + +G+SWF D+ +RLD +YW +V++ K
Sbjct: 502 IGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVIVAK 561
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| TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 189/539 (35%), Positives = 306/539 (56%)
Query: 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPL 64
+S +I + ERFA+ G+A NL+TYLT + S + AA VN+W G S+LP++ A +
Sbjct: 35 RSAWFIIGVEVAERFAYFGIACNLITYLTGPLGQSTAKAAVNVNTWSGTASILPILGAFV 94
Query: 65 ADSYWDRYSTILAFSFIYVVGLVALXXXXXXXXXXXXNKISSSSA--------FLFWSLC 116
AD+Y RY TI+ S IY++GL L + + +SA F SL
Sbjct: 95 ADAYLGRYRTIVVASLIYILGLGLLTLSASLIIMGLSKQRNDASAKPSIWVNTLFFCSLY 154
Query: 117 LISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTV 176
L+++GQGG+ P +QAFGADQ D++D P + S FF WW+ + +G + + V
Sbjct: 155 LVAIGQGGHKPCVQAFGADQFDAED--PKEVIARGS-----FFNWWFLSLSAGISISIIV 207
Query: 177 MSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSD--ETLKC--TVSLINIVQAI 232
++Y+Q+ W GF IP + MV + A F G +IYRY E + T + I V I
Sbjct: 208 VAYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRYPKGHHEEVNSSNTFARIGRVFVI 267
Query: 233 KAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNA 292
KL+ L +D + + +++K L + E P SG V +A
Sbjct: 268 AFKNRKLRLEHSSLELDQGLLEDGQSEKRKDRLNF--LAKAMISREGVEPCSGRD-VDDA 324
Query: 293 KVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILL 352
K +++L PIW ++ + + Q TFFTKQG+T+ R I +IP A+L S + VSI++
Sbjct: 325 KALVRLIPIWITYVVSTIPYAQYITFFTKQGVTVDRRILPGVEIPAASLLSFVGVSILIS 384
Query: 353 MPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYS--- 409
+PLY+++ +P I + GIT++QR+G GM LS+ M++AA+VE+KRL++ +++
Sbjct: 385 VPLYERVFLPIARKITKKPFGITMLQRIGAGMVLSVFNMMLAALVESKRLKIAREHGLVD 444
Query: 410 ---ETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSF 466
TVP+SI+W +PQY+LLG+ D+F+++G QEFFY++VP +R++G +L S G+ SF
Sbjct: 445 KPDVTVPMSIWWFVPQYLLLGMIDLFSMVGTQEFFYDQVPTELRSIGLSLSLSAMGLSSF 504
Query: 467 LSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVXXXXXXXXXXXYVMLCKFFKSR 525
LS LI++I+ ++ ++G WF+ ++ A +D +YW+ ++ + K + R
Sbjct: 505 LSGFLISLID-WATGKDG--WFNSNLNRAHVDYFYWLLAAFTAIAFFAFLFISKMYVYR 560
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LFR1 | PTR50_ARATH | No assigned EC number | 0.6277 | 0.9813 | 0.9510 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01840022 | hypothetical protein (540 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 535 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 9e-57 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 5e-26 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-20 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 9e-08 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 4e-05 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 9e-57
Identities = 120/401 (29%), Positives = 187/401 (46%), Gaps = 40/401 (9%)
Query: 72 YSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSS-AFLFWSLCLISLGQGGYNPSLQ 130
+ TIL S IY +G V LT A +S A + L LI+LG GG P++
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGA------IPPSLSPVQVALFYIGLYLIALGTGGIKPNVS 54
Query: 131 AFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGF 190
AFGADQ D + ++ FF W+YF + +GSL+ + Y+Q G+ LGF
Sbjct: 55 AFGADQFDETQD----------PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGF 104
Query: 191 AIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDN 250
+P + M+ + F GS+ Y+ K+ + I I AA KN K+ LP D+
Sbjct: 105 GLPAVGMLLALLVFLLGSRRYKKKAPPGGSP--FTVCIAFIITAA---GKNRKLQLPKDS 159
Query: 251 SDTVE-LELQEQKPLCGNKKLGS----SKELDEDEYPKSGNHLVKNAKVVLKLFPIWTML 305
LE ++ + K L + V + +L + PIW
Sbjct: 160 HWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAFW 219
Query: 306 LMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIH 365
++ ++ Q AT +Q TM R I F+IPPA+ QS +++++L+P+ D ++ P
Sbjct: 220 ILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPL-- 277
Query: 366 IIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY-----SETVPLSIFWLL 420
+R ++G+T+ QR G+GMF+ I+A +AAIVE KR TVPL I W L
Sbjct: 278 --LRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSL 335
Query: 421 PQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVF 461
P+ + G+ G EF + +P M ++ L +
Sbjct: 336 PELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAAA 372
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-26
Identities = 94/395 (23%), Positives = 176/395 (44%), Gaps = 58/395 (14%)
Query: 19 FAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAF 78
F++ G+ + LV YL + + + +A +++ + PL+ A +ADS+ ++ TIL
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60
Query: 79 SFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLD 138
S +YVVG + A S + + + + + L LI+LG GG P + AFG DQ +
Sbjct: 61 SLVYVVGHALASLGAVP---SLGHPLHDALSLV--GLALIALGTGGIKPCVSAFGGDQFE 115
Query: 139 SDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYI---QDTFG----WVLGFA 191
+ + FF ++YF + +GSL + + FG + L F
Sbjct: 116 ER----------QLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165
Query: 192 IPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIV-QAIKAAASKLKNSKIVLPIDN 250
+P I M + FS GS++Y+ K NIV + +K LK
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVG--------NIVSKVMKCIVFALKKRF------- 210
Query: 251 SDTVELELQEQKPLCGNKKLGSSKELDED-EYPKSGNHLVKNAKVVLKLFPIWTMLLMFA 309
+ + D PK ++++ K +L++ ++ L MF
Sbjct: 211 ---------------RTRSEDWPRLHWLDWAAPKYLIRMIRSTKRLLRVLFLFIPLPMFW 255
Query: 310 VIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIR 369
+F Q + +T Q M ++G F I P +Q+ + +++L+P++D ++ P + +
Sbjct: 256 ALFDQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLILVPIFDYVVYP---ALAK 311
Query: 370 CEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEM 404
C T +++M +GM L+ +A +AA+++ K
Sbjct: 312 CGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPT 346
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 81/500 (16%), Positives = 180/500 (36%), Gaps = 60/500 (12%)
Query: 1 MGLSKSCIMLIVIAGKERFAFKGVASNLVTYLT----DVVKMSNSSAAKTVNSWCGFTSM 56
G + ++ + ERF++ G+ + L+ YL D + + A +++ +
Sbjct: 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYL 76
Query: 57 LPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLC 116
P++ LAD TI+ + + +G + L ++ S L+ L
Sbjct: 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-----------VSGPGGLYIGLA 125
Query: 117 LISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTV 176
LI +G G + P++ + + D D ++ +LF Y G+ GSL+ +
Sbjct: 126 LIIVGTGLFKPNISSLLGELYPKD-------DPRRDGGFTLF----YMGINIGSLIAPII 174
Query: 177 MSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGS---QIYRYKSDETLKCTVSLINIVQAIK 233
+ +GW +GF + + M+ F G + D L+ ++ +
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLV 234
Query: 234 AAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAK 293
+ ++ + V L + + + S ++ ++ +
Sbjct: 235 VMILAALLTLLLN-QNTFSGVLLVISILIAIIYFAEAFRSPKVFDER------------R 281
Query: 294 VVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLM 353
+L P++ ++F +++Q + F++PPA QS IIL
Sbjct: 282 RLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFS 341
Query: 354 PLYDKILIPFIHIIIRCEKGITVMQRMGIGMFL-SIIAMIIAAIVETKRLEMNQQYSETV 412
P+ + ++ T + + +G+ L + +I+
Sbjct: 342 PILAALWTKLGR---GNKQPSTPI-KFALGLILAGLGFLILLLAGIWFGGPSGL------ 391
Query: 413 PLSIFWLLPQYILLGISDIF-TVIGMQEFFYNEVPVRM--RTMGFALYTSVFG--VGSFL 467
+S++WL+ Y+L ++F + +G+ P + M T G +G +
Sbjct: 392 -VSVWWLVLSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQV 449
Query: 468 SALLITVIEALSSSRNGRSW 487
+ L A ++ GR +
Sbjct: 450 AGLTAVTDPAYTAFIEGRVF 469
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Length = 498 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 9e-08
Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 23/197 (11%)
Query: 17 ERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL 76
E F+F G+ + L+ YLT+ +K ++ A + +++C + P++ LAD ++
Sbjct: 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80
Query: 77 AFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQ 136
+ + +G V L ++ +FL+ SL +I G G + ++
Sbjct: 81 LGALLMAIGHVVLGAS------------EIHPSFLYLSLAIIVCGYGLFKSNVSCLLG-- 126
Query: 137 LDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIA 196
EL TD ++ SL Y GS++ Y Q+ + W +GF + +
Sbjct: 127 -----ELYEPTDPRRDGGFSLM----YAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177
Query: 197 MVTSTAFFSFGSQIYRY 213
M+ F G++ + +
Sbjct: 178 MIAGLVIFLCGNRHFTH 194
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Length = 493 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 59/366 (16%), Positives = 115/366 (31%), Gaps = 65/366 (17%)
Query: 9 MLIVIAGKERFAFKGVASNLVTYL--TDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLAD 66
L + ERF++ G+ L YL + S A ++ +L V D
Sbjct: 14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD 73
Query: 67 SYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYN 126
W T++ + ++G L +S +F+ L I++G G +
Sbjct: 74 RVWGTKKTMVLGGIVLMLGHFMLA-------------MSIYPDLIFYGLGTIAVGSGLFK 120
Query: 127 PSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGW 186
+ + +L ++P ++ F +Y + GS + + I + +G+
Sbjct: 121 ANPSSMVG-KLYERGDMP---------RRDGGFTLFYMSINIGSFISPLLAGVIAENYGY 170
Query: 187 VLGFAIPTIAMVTSTAFFSFGSQIYRYKS-----------DETLKCTVSLINIVQAIKAA 235
+GF + + MV F G + R L + A
Sbjct: 171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCA 230
Query: 236 ASKLKN--SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAK 293
+ I+L TV L + + +L LD K
Sbjct: 231 WLMHHVVIANILLM-----TVTLAV-----IIFFFRLAFKPRLDAVARNK---------- 270
Query: 294 VVLKLFPIWTMLLMFAVIFQQ---PATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSII 350
+ ++ ++F V++ Q FF M + +P QS ++
Sbjct: 271 -MYAYIVLFLEAVVFWVLYAQMPTSLNFFADN--NMHHEMLG-MSVPVIWFQSLNPFWVV 326
Query: 351 LLMPLY 356
+ P+
Sbjct: 327 VGSPVL 332
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The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.92 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.92 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.9 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.89 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.89 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.87 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.87 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.86 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.85 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.85 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.84 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.83 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.8 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.76 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.74 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.72 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.71 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.71 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.7 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.63 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.6 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.6 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.46 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.44 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.43 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.35 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.34 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.33 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.33 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.3 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.29 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.28 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.28 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.27 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.27 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.27 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.25 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.22 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.22 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.18 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.17 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.17 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.16 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.15 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.13 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.09 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.09 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.07 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.06 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.06 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.05 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.05 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.04 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.04 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.01 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.0 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.99 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.99 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.99 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.98 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.97 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.96 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.93 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.93 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.89 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.85 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.79 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.77 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.74 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.73 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.7 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.68 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.65 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.6 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.59 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.58 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.57 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.56 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.56 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.56 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.55 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.46 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.42 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.4 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.39 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.39 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.36 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.26 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.22 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.17 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.15 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.14 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.08 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.08 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.07 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.07 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.03 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.02 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.99 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.99 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.97 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.91 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.89 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.88 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.84 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.84 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.68 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.65 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.54 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.41 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.28 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.25 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.14 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.12 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.03 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.72 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.69 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.61 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.49 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.06 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.44 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.95 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.93 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.51 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.96 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.05 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.99 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.15 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.81 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 91.67 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 91.35 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 91.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.5 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.33 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 87.36 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 85.2 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 82.87 |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=333.73 Aligned_cols=464 Identities=16% Similarity=0.260 Sum_probs=357.8
Q ss_pred CCCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC----CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHH
Q 009413 1 MGLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVK----MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL 76 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~ 76 (535)
++|||.++.+.+++++|||+||++...+..|+..+++ +|.+++.-+.++|....++.++++||++||++|+||++.
T Consensus 17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~ 96 (498)
T COG3104 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV 96 (498)
T ss_pred CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 4799999999999999999999999999999998888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchh
Q 009413 77 AFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKS 156 (535)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 156 (535)
.|.+++.+|.+.++..... +...++++.+++++|.|++.|+..++++|++|+ +|+ ||.
T Consensus 97 lGail~~iGh~~L~~~~~~-----------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~-------~Dp----rrD 154 (498)
T COG3104 97 LGAILMAIGHLVLAISSVS-----------GPGGLYIGLALIIVGTGLFKPNISSLLGELYPK-------DDP----RRD 154 (498)
T ss_pred HHHHHHHHHHHHHhccccc-----------cccHHHHHHHHHHhccccccccHHHHHHHhcCC-------CCc----ccC
Confidence 9999999999999887300 677899999999999999999999999999999 664 478
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccc---cch-HHHHHHHH
Q 009413 157 LFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKC---TVS-LINIVQAI 232 (535)
Q Consensus 157 ~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 232 (535)
..++.+|++.|+|+.++|++.+++.+..||+..|.++++.+..+++.++++++........+++. .+. .......+
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLV 234 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999998888876654433211100 000 00111111
Q ss_pred HHHHhcc--cccccccCCCCCCccchhhccc--cccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHH
Q 009413 233 KAAASKL--KNSKIVLPIDNSDTVELELQEQ--KPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMF 308 (535)
Q Consensus 233 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (535)
....... ... +...+-.. ...+... .-...+++ ++++.. ++|||++..++++....+|
T Consensus 235 ~~~~~~~~~~~l-----------~~~~~~~~~~~~~i~~~-----~~~~~~~~-~~~~~~-~er~r~~~~~~Lfl~~~iF 296 (498)
T COG3104 235 VMILAALLTLLL-----------NQNTFSGVLLVISILIA-----IIYFAEAF-RSPKVF-DERRRLLAAIPLFLFAVIF 296 (498)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-----HHHHHHHh-ccCccH-HHHHHHHHHHHHHHHHHHH
Confidence 1111110 000 00000000 0000000 00000011 133333 8899999999999999999
Q ss_pred HHHhcCCCceeeeecc-cccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHH
Q 009413 309 AVIFQQPATFFTKQGM-TMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLS 387 (535)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~ 387 (535)
|..+.|.++.+..|.. ..+++..+ +..++++.+++|++.++++.|+.++++.|+.++. +..+.+.|+..|+.++
T Consensus 297 W~~~~Q~~ssl~~~a~~~v~~~~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~ 371 (498)
T COG3104 297 WALYEQMGSSLNLYADRNVNRQIFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHhccchHHHHHHHhhcccccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHH
Confidence 9999999998888764 56666555 8899999999999999999999999999877664 3578888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 388 IIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l 467 (535)
+.+++++.......-+ .....|.+|+++.+++.++||.+.+|+..+++.+.+|+++.+..+|.+.+.+..|+.+
T Consensus 372 g~~fl~l~~~~~~~~~------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l 445 (498)
T COG3104 372 GLGFLILLLAGIWFGG------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL 445 (498)
T ss_pred HHHHHHHHHHHHhhcC------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988876433211 1226789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 468 SALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 468 g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
+..+.+.... ..+..+......+|+..+...++..+......++.++.
T Consensus 446 ~g~va~~~~~----------~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~ 493 (498)
T COG3104 446 GGQVAGLTAV----------TDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM 493 (498)
T ss_pred hceecccccc----------cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 8887764221 00111123345677777777777777766666554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=343.81 Aligned_cols=508 Identities=38% Similarity=0.632 Sum_probs=428.0
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
|-|+.+..++..+.+|+.++|++..++..|+.+.+|.+...+.-.++.+...+...++.+++++|.|+||.+++.++.++
T Consensus 34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i 113 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI 113 (571)
T ss_pred chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccc--------------cCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcC
Q 009413 82 YVVGLVALTSTAFSWAWST--------------TNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTT 147 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 147 (535)
..+|..++..+...+.+.. ++.. ....++.++-+.++|.|+..|+..++.+|++++ .
T Consensus 114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~--q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~-------~ 184 (571)
T KOG1237|consen 114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKL--QLAVLYGALYLIALGAGGIRPCLLAFGADQFDE-------L 184 (571)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchH--HHHHHHHHHHHheeccCCCCCcchhhcccccCc-------c
Confidence 9999766665544332211 1111 334677888888999999999999999999996 5
Q ss_pred CcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHH
Q 009413 148 DNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLIN 227 (535)
Q Consensus 148 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (535)
++.++..+.+.+.|+++..++|..++..+..|+.+..+|.+.|.++.+.+.+++++++...+.+++++|.++ |...
T Consensus 185 ~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gs----p~t~ 260 (571)
T KOG1237|consen 185 DPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGS----PKTR 260 (571)
T ss_pred CcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCC----chhH
Confidence 555556678999999999999999999999999999999999999999999999999999999888888887 8899
Q ss_pred HHHHHHHHHhcccccccccCCC---------C-CCccchhhccccccccccCCCCCcccccccCCCC---CCcchhhhHH
Q 009413 228 IVQAIKAAASKLKNSKIVLPID---------N-SDTVELELQEQKPLCGNKKLGSSKELDEDEYPKS---GNHLVKNAKV 294 (535)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 294 (535)
..+.+..+.++++...+.+..+ . ..++..++++ ++.+.... + .....+..+| ..+.+++.|.
T Consensus 261 i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~-kaa~~~~~--~--~~~~~~~~~w~lct~~~Vee~K~ 335 (571)
T KOG1237|consen 261 IGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLD-KAALKTSD--D--LKDGLDANPWRLCTVTQVEEVKA 335 (571)
T ss_pred HHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhh-HhhccCCc--c--cccccccCCccCCCceehhhhhh
Confidence 9999888888776544322100 0 0023445555 44331100 0 0000001112 3333889999
Q ss_pred HhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCC
Q 009413 295 VLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGI 374 (535)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~ 374 (535)
+.+.+++|.....++..+.|..+.+..|+..++.+++.++.+|+..+..+..+...+..|++|++..|+.||.++++++.
T Consensus 336 ~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~ 415 (571)
T KOG1237|consen 336 VLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGI 415 (571)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCC
Confidence 99999999999999999999999999999999999887689999999999999999999999999999999999877789
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHH
Q 009413 375 TVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ-YSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMG 453 (535)
Q Consensus 375 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 453 (535)
+++.++.+|+++..+++...+..|.++.+.... .....+++++|+++++++.|++|.+..++..++..+++|++||+.+
T Consensus 416 t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~ 495 (571)
T KOG1237|consen 416 TPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVA 495 (571)
T ss_pred ChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHH
Confidence 999999999999999999999999888887643 1234579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-cccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 009413 454 FALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFS-DDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNL 529 (535)
Q Consensus 454 ~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 529 (535)
++++.+..++|+.++.+++..+...+.+ +.+|++ +++|.++.+.+||+++....+....+.++.++++.|++++
T Consensus 496 ~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 496 TALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 9999999999999999999998886654 558999 9999999999999999999999999998888887776543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=332.33 Aligned_cols=469 Identities=13% Similarity=0.175 Sum_probs=332.9
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
+|||.++.+++.+++|+++||++..+++.|+++++|++.++++++.+.+....++.++++|+++||++||||+++.+.++
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999945999999999999
Q ss_pred HHHHHHHHHhhcccccccccCccccchH-HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSA-FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+.+++++++++. +.. .++++|+++|+|.|...|+..++++|++|+ ++ ++|++.++
T Consensus 91 ~~~g~~~~~~~~-------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~-------~~----~~~~~~~~ 146 (489)
T PRK10207 91 LAIGYFMTGMSL-------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP-------KD----PRLDGAFT 146 (489)
T ss_pred HHHHHHHHHHhc-------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCC-------Cc----hhhhcchh
Confidence 999999998876 333 355889999999999999999999999988 33 25688999
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHH------HH
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAI------KA 234 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 234 (535)
+++++.|+|..+||.+++++.++.|||+.|+++.+..+++++.+...++..++.+++.++ ++.+...... ..
T Consensus 147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~l~~~~~~~~ 224 (489)
T PRK10207 147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDH--KPMSFSKLLLVLLGSVVM 224 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCc--cchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998776666655555554433322111110 0111100000 00
Q ss_pred HHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcC
Q 009413 235 AASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQ 314 (535)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (535)
......... ..+........ ...+ . .. .-..++ .+.+ ..++++....+.++.....+|..+.|
T Consensus 225 ~~~~~~~~~------~~~~~~~~~~~-~~~i--~-~~--~f~~~~----~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q 287 (489)
T PRK10207 225 IFVCAWLMH------NVEVANLVLIV-LSIV--V-TI--IFFREA----FKLD-KTGRNKMFVAFVLMLEAVVFYILYAQ 287 (489)
T ss_pred HHHHHHHHh------hhhHHHHHHHH-HHHH--H-HH--HHHHHH----hcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00000000000 0000 0 00 000000 0000 23455666666667778889999999
Q ss_pred CCceeeeecc-cccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHH
Q 009413 315 PATFFTKQGM-TMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMII 393 (535)
Q Consensus 315 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~ 393 (535)
..+.+..+.. .++.++.+ +.++++.++++|++.+++..|+.+++.+++ ++|+.+.++..++.+|+++.++++++
T Consensus 288 ~~~~l~l~~~~~~~~~~~G-~~i~~~~~~~~n~~~iii~~pl~~~l~~rl----~~r~~~~~~~~k~~~G~~l~~~~~~~ 362 (489)
T PRK10207 288 MPTSLNFFAINNVHHEILG-FSINPVSFQALNPFWVVVASPILAGIYTHL----GSKGKDLSMPMKFTLGMFLCSLGFLT 362 (489)
T ss_pred cccHHHHHHHHhccccccc-eEECHHHHHhHhHHHHHHHHHHHHHHHHHH----hhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 8776665553 45555554 778889999999999999999988765444 44444578999999999999999876
Q ss_pred HHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 394 AAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLIT 473 (535)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~ 473 (535)
++....... .. + ...+.++++..+++.++||.+..|+.++++.+.+|++++|.++|++++..++|+.+|..+..
T Consensus 363 ~~~~~~~~~--~~-~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 363 AAAAGMWFA--DA-Q---GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHhhc--CC-C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654321110 00 1 13567889999999999999999999999999999999999999999999999999999887
Q ss_pred HHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 009413 474 VIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLD 530 (535)
Q Consensus 474 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 530 (535)
.+.. .. ....+.. ....+..+|..+++.+++..++++...++.+|..++++
T Consensus 437 ~~~~-~~----~~~~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 487 (489)
T PRK10207 437 FTAV-PD----NITDPLE-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPE 487 (489)
T ss_pred Hhcc-cc----ccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6532 00 0011100 01235667888888888888887777776666544433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=324.55 Aligned_cols=457 Identities=14% Similarity=0.172 Sum_probs=330.0
Q ss_pred CCCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHH
Q 009413 1 MGLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDV--VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAF 78 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~ 78 (535)
++|||.++.+++.+++|++++|++.++++.|++++ +|+|..+++++.+.+.++..++++++|+++||++||||++..+
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 79 SFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
.++++++.+++++++ +.+.++++|++.|+|.|...|+..++++|++|+ +++ .+|+++
T Consensus 86 ~~~~~~g~~~~~~~~-------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~-------~~~---~~r~~~ 142 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYER-------GDM---PRRDGG 142 (475)
T ss_pred HHHHHHHHHHHHhcc-------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCC-------CCc---ccccce
Confidence 999999998888876 777888999999999999999999999999987 332 257889
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCccc-ccchHHHHH--HH----
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLK-CTVSLINIV--QA---- 231 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~---- 231 (535)
+++++++.|+|..+||.+++++.++.||++.|.++++.++++++.++..++..++.++++++ +++..+... ..
T Consensus 143 ~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (475)
T TIGR00924 143 FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAA 222 (475)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHH
Confidence 99999999999999999999999989999999998876666665555555443322221110 000000000 00
Q ss_pred HHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHH
Q 009413 232 IKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVI 311 (535)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (535)
+.......... . +. ...+........ . .. .... +.+ +.++....++++....++++....++|..
T Consensus 223 ~~~~~~~~~~~-~-----~~--~~~~~~~~~~~~-~--~~--~~~~-~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 287 (475)
T TIGR00924 223 LALVFFCAWLM-H-----HV--VIANILLMTVTL-A--VI--IFFF-RLA-FKPRLDAVARNKMYAYIVLFLEAVVFWVL 287 (475)
T ss_pred HHHHHHHHHHH-h-----cc--HHHHHHHHHHHH-H--HH--HHHH-HHH-HhccCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0 00 000000000000 0 00 0000 000 00000023344455567788888899999
Q ss_pred hcCCCceeeeec-ccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHH
Q 009413 312 FQQPATFFTKQG-MTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIA 390 (535)
Q Consensus 312 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 390 (535)
+.|..+.+..+. ..++.++.+ +++++++++++|++.+++..|+.+++..++.+| .++.+...++.+|+++.+++
T Consensus 288 ~~Q~~s~l~l~~~~~~~~~~~~-~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~ 362 (475)
T TIGR00924 288 YAQMPTSLNFFADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGAS 362 (475)
T ss_pred HHHhhhHHHHHHHHhccccccc-eEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHH
Confidence 999988766443 345666655 788999999999999999999988765444333 23467777899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009413 391 MIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 470 (535)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~ 470 (535)
+..+++.... .+. ....+.+|+++++++.++||.+..|..++++.+.+|+++||+++|++.+...+|+.+++.
T Consensus 363 ~~~~~~~~~~----~~~---~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~ 435 (475)
T TIGR00924 363 FLTFAASIWF----ADA---GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY 435 (475)
T ss_pred HHHHHHHHhh----cCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888765221 111 114688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 471 LITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFK 523 (535)
Q Consensus 471 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (535)
+.+...+. .+...+|...++++++..++.++..+..+
T Consensus 436 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 436 LATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876541 22344666666666666666666655444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=313.80 Aligned_cols=468 Identities=15% Similarity=0.229 Sum_probs=331.0
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
+|||.++.++..+++|++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++.+.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999944999999999999
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..++.+++..... +...+.++..+..+|.|...++..++++|.+|+ ++ ++|.+++++
T Consensus 86 ~~lg~lll~~~~~------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~-------~~----~~R~sgf~i 142 (493)
T PRK15462 86 MAIGHVVLGASEI------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP-------TD----PRRDGGFSL 142 (493)
T ss_pred HHHHHHHHHHhhc------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCC-------CC----ccccceehH
Confidence 9998876654321 223345555666678888889999999999998 43 368999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccC---CCcccccchHHHHHHHHHHH---
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKS---DETLKCTVSLINIVQAIKAA--- 235 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 235 (535)
+|.+.|+|+.++|.+++++.+..||++.|.++++.++++++.++..++...+.. ++..++++............
T Consensus 143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (493)
T PRK15462 143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVA 222 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988777777666665554433221 11110000000000000000
Q ss_pred ---HhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHh
Q 009413 236 ---ASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIF 312 (535)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (535)
......... . . +.......-... ..+ .... + ++...++|||+...++++....+||..|
T Consensus 223 ~~~~~~~~~~~~---~--~--~~~~~~~~~~~~--~~~---~~~~-----~-~~~~~~er~r~~~~~~l~~~~~~Fw~~~ 284 (493)
T PRK15462 223 TPALITVLFWKE---W--S--VYALIVATIIGL--GVL---AKIY-----R-KAENQKQRKELGLIVTLTFFSMLFWAFA 284 (493)
T ss_pred HHHHHHHHHHHH---H--H--HHHHHHHHHHHH--HHH---HHHH-----H-hcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 000000000 0 0 000000000000 000 0000 0 0011467889999999999999999999
Q ss_pred cCCCceeeeec-ccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHH
Q 009413 313 QQPATFFTKQG-MTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAM 391 (535)
Q Consensus 313 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 391 (535)
.|.++.+..+. .++|.++.+ +.+|+++++++|++.+++.+|+..+++.+..+| ++..+...|+.+|++++++++
T Consensus 285 ~Q~~~sl~lfa~~~vd~~~~g-~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 285 QQGGSSISLYIDRFVNRDMFG-YTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHhhHHHHHHHHHhccchhcc-eeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHH
Confidence 99999877665 468888887 899999999999999999999999886554332 224688899999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHH-HHHHHHHHH
Q 009413 392 IIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVF-GVGSFLSAL 470 (535)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~lg~~ 470 (535)
+++...... .+.+| ..+.+|++..+++.++||...+|...+.+.+.+|++.||+.+|++.+.. .+|+.++..
T Consensus 360 ~~l~~~~~~----~~~~~---~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~ 432 (493)
T PRK15462 360 CILTLSARW----SAMYG---HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGV 432 (493)
T ss_pred HHHHHHHhh----cCCCC---CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988775422 11111 4688899999999999999999999999999999999999999997744 678877777
Q ss_pred HHHHHHhhhcCCCCCCCCCccc---chhhhHHHHHHHHHHHHHH--HHHHHHhhcccccccccc
Q 009413 471 LITVIEALSSSRNGRSWFSDDM---KEARLDLYYWVLALASALS--LLLYVMLCKFFKSRTDNL 529 (535)
Q Consensus 471 ~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 529 (535)
+.+.....+ -.++.. +...+..+|...+..+++. .+++.+..+..|-|++..
T Consensus 433 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (493)
T PRK15462 433 IADQTSQAS-------FDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRAL 489 (493)
T ss_pred HHHHhcccc-------CCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 776553210 000000 1123445666666655544 455555566555555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=312.33 Aligned_cols=456 Identities=13% Similarity=0.217 Sum_probs=323.9
Q ss_pred CCCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHH
Q 009413 1 MGLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSF 80 (535)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 80 (535)
++|+|.++.+++.++++++++|++..+++.|+++++|+|.++++++.+.+.......++++|+++||++|||++++.+.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999988877778888999999993399999999999
Q ss_pred HHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 81 IYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
++.++..+++++.. +...+.++|+++|+|.|...|+..++++|++|+ ++ .+|.++++
T Consensus 97 ~~~ig~~l~~~~~~------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~-------~~----~~~~~~~~ 153 (500)
T PRK09584 97 VLAIGYALVAWSGH------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK-------DD----PRLDGAFT 153 (500)
T ss_pred HHHHHHHHHHHhcc------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC-------Cc----hhhhhcch
Confidence 99999888887641 445677889999999999999999999999987 33 24667889
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcccccccc--CCCcccccchHHHHH------HHH
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYK--SDETLKCTVSLINIV------QAI 232 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~ 232 (535)
+++++.++|..+||.+++++.++.||++.|.+..+..+++++.++..++..++. +++++ +.+... ...
T Consensus 154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 229 (500)
T PRK09584 154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFE----PINYRKLLLTIVGVV 229 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCcc----ccchhhHHHHHHHHH
Confidence 999999999999999999999999999999998876666655554444333322 11111 111100 000
Q ss_pred HHHH-hcccccccccCCCCCCccch-hhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHH
Q 009413 233 KAAA-SKLKNSKIVLPIDNSDTVEL-ELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAV 310 (535)
Q Consensus 233 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (535)
.... ......... .. +.. .... .... ..... ..+ +....++++....+.++....++|.
T Consensus 230 ~~~~~~~~~~~~~~----~~--~~~~~~~~-~~~~--------~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~i~f~~ 290 (500)
T PRK09584 230 ALIAIATWLLHNQE----IA--RMALGVVA-LGIV--------VIFGK---EAF-AMKGAARRKMIVAFILMLEAIIFFV 290 (500)
T ss_pred HHHHHHHHHHhcch----HH--HHHHHHHH-HHHH--------HHHHH---HHh-hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000000 00 000 0000 0000 00000 000 0013456666677777888889999
Q ss_pred HhcCCCceeeeecc-cccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHH
Q 009413 311 IFQQPATFFTKQGM-TMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSII 389 (535)
Q Consensus 311 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~ 389 (535)
.+.|.++.+..+.. ..+.++.+ +.+++++++++|++.+++..|+.++...++ .+ +.++.+++.+|++++++
T Consensus 291 ~~~q~~~~l~~~~~~~~~~~~~g-~~i~~~~~~s~n~i~iil~~p~~~~~~~~l----~~---r~~~~~~~~~G~~l~~l 362 (500)
T PRK09584 291 LYSQMPTSLNFFAIRNVEHSILG-IAVEPEQYQALNPFWIMIGSPILAAIYNKM----GD---RLPMPHKFAIGMVLCSG 362 (500)
T ss_pred HHHHhccHHHHHHHHhccccccc-eEECHHHHHHHhHHHHHHHHHHHHHHHHHh----Cc---CCCcHHHHHHHHHHHHH
Confidence 99999998777654 35555555 778899999999999999999998764333 33 25678899999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 009413 390 AMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSA 469 (535)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~ 469 (535)
+++++...... .++. ...+.+++++.+++.++||.+..|...+++.+.+|+++||+++|++.+...+|+.++.
T Consensus 363 ~f~~l~~~~~~----~~~~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g 435 (500)
T PRK09584 363 AFLVLPLGAKF----ANDA---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAG 435 (500)
T ss_pred HHHHHHHHHHh----cCCC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988775432 1111 1467789999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHhhhcCCCCCCCCCcccc-hhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 470 LLITVIEALSSSRNGRSWFSDDMK-EARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 470 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
.+.+.+.. . .-..+... .+.+..+|..+++++++.+++.+...++.+|
T Consensus 436 ~~~~~~~~-~------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 436 YVANLMAV-P------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHhcc-c------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87764431 0 00001111 1235667777777766666665555554444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=244.20 Aligned_cols=332 Identities=26% Similarity=0.483 Sum_probs=261.4
Q ss_pred hhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 19 FAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAW 98 (535)
Q Consensus 19 ~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (535)
|+||++...+..|+.+.+|++.+.+..+.+.+.....+.++++|+++|+++||++++..+.+++.+|..++++...++..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999888876432210
Q ss_pred cccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhh
Q 009413 99 STTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS 178 (535)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~ 178 (535)
. . ......+++..+.++|.|+..|+..+..+|++++ +++ ++|.++++++|+++|+|+.+++++.+
T Consensus 81 ~---~--~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~-------~~~---~~~~s~F~~fY~~iNiGSlis~~i~~ 145 (654)
T TIGR00926 81 H---P--LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE-------RQL---SLRSRFFSFFYFAINAGSLISTIITP 145 (654)
T ss_pred c---c--hHHHHHHHHHHHHHhhccccccCchhhhHhhcCc-------cch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0234467888899999999999999999999876 332 46899999999999999999999999
Q ss_pred hhccc-------cchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCC
Q 009413 179 YIQDT-------FGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNS 251 (535)
Q Consensus 179 ~l~~~-------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (535)
++.+. .+|...|.++++.+++++++.....++++++++.++ +.....+......+++..... .+
T Consensus 146 ~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs----~l~~v~~vi~~a~~~~~~~~~-----~~ 216 (654)
T TIGR00926 146 ILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGN----IVSKVIKCIVTALRKRFSTRS-----EH 216 (654)
T ss_pred HHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc----HHHHHHHHHHHHHHHhhccCC-----cc
Confidence 88744 369999999999999998888887777665555544 555555555544443221100 00
Q ss_pred CccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCC
Q 009413 252 DTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIG 331 (535)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (535)
...+|.+ +.. ++.+.+.++++|+++++++++....++|..+.|.++.+..|...++.+++
T Consensus 217 --~~~~~ld-~a~-----------------~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~ 276 (654)
T TIGR00926 217 --WPLHWLD-YAK-----------------DKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG 276 (654)
T ss_pred --cchhHHH-Hhc-----------------cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC
Confidence 0122333 111 11223337888999999999999999999999999999988877777776
Q ss_pred CccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 009413 332 SNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVE 398 (535)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 398 (535)
+ +.++++.++.++.+.+++..|++++.+.|..+|.+ .+.++.+++.+|+++++++++++...+
T Consensus 277 g-~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve 339 (654)
T TIGR00926 277 G-FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQ 339 (654)
T ss_pred C-EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78899999999999999999999987777666543 357889999999999999998865543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=231.82 Aligned_cols=369 Identities=14% Similarity=0.137 Sum_probs=239.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
++.+.+..+......+.. ..+.+.+.+++|.|..+.++..+.+.+++.+++++.|+++||+ ||||++..+.+++.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVP-VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHHHHHHhHHHHH-HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHH
Confidence 344444444433333332 2233567779999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
+.+.+++ +++.++++|+++|++.+...|...+++.|++|+ ++|+++.++...+.
T Consensus 89 ~~~~~~~-------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~g~~~~~~ 142 (390)
T PRK03545 89 VLSALAW-------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------------GKKAQALSLLATGT 142 (390)
T ss_pred HHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------------hhhhhHHHHHHHHH
Confidence 9999887 999999999999999998889999999999998 67999999999999
Q ss_pred hhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccccccc
Q 009413 167 CSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVL 246 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++|..++|.+++.+.++.|||+.|++.++..++..+..+...++.+ ++++ ++..+ ..+.
T Consensus 143 ~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~---~~~~---~~~~~----~~~~----------- 201 (390)
T PRK03545 143 ALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP---SEHS---GSLKS----LPLL----------- 201 (390)
T ss_pred HHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCc---chHHH----HHHH-----------
Confidence 9999999999999999899999999887765554444333222211 1111 01100 0000
Q ss_pred CCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceeeeeccc
Q 009413 247 PIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFTKQGMT 325 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
.+++ ..+.. ..........+..+...+.++
T Consensus 202 ------------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l------ 232 (390)
T PRK03545 202 ------------------------------------------FRRP-ALVSLYLLTVVVVTAHFTAYSYIEPFV------ 232 (390)
T ss_pred ------------------------------------------HhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 0111 11111 111111111111121111111
Q ss_pred ccccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009413 326 MKRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEM 404 (535)
Q Consensus 326 ~~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 404 (535)
....+ .+. ....+.....++.+++..+.+++. +|. ++ +.+..+..+..++...+...
T Consensus 233 -~~~~g--~s~~~~~~~~~~~~~~~~~g~~~~g~l~----dr~-------~~-~~~~~~~~~~~~~~~~l~~~------- 290 (390)
T PRK03545 233 -QQVAG--LSENFATLLLLLFGGAGIIGSVLFSRLG----NRH-------PS-GFLLIAIALLLVCLLLLLPA------- 290 (390)
T ss_pred -HHhcC--CCccHHHHHHHHHHHHHHHHHHHHHHHh----hcc-------ch-hHHHHHHHHHHHHHHHHHHH-------
Confidence 11100 111 112222223334444444444332 222 11 23444555554444333221
Q ss_pred hccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009413 405 NQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNG 484 (535)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~ 484 (535)
..+.+.+++..++.|++.....+..++.+.+..| +.|++++|+++....+|..+|+.+.|++.+
T Consensus 291 --------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~------- 354 (390)
T PRK03545 291 --------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL------- 354 (390)
T ss_pred --------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 2244566667778888887777777788888877 578999999999999999999999999987
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 009413 485 RSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520 (535)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (535)
..++...|+..+++.+++.+..+...+
T Consensus 355 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 355 ---------HLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ---------ccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 233466777778888888777766654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=228.42 Aligned_cols=376 Identities=11% Similarity=0.091 Sum_probs=247.0
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
..+|++..+++..+...++.....+.++.|+++++|.|..+.+++.+.+.++..+++++.|+++||+ ||||+++.+.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~ 90 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG 90 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence 3467888899999999999888889999999999999999999999999999999999999999995 999999999988
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
+.++.+.+..+.....+.. . +...+++.|+++|++.+...+...+++.|..|+ ++|+++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~---~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~ 152 (399)
T PRK05122 91 CALSGLLYLLAGLLAAWPV---L--SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------------LHTGRVISW 152 (399)
T ss_pred HHHHHHHHHHhhhhhccch---h--HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------------hhhccchhh
Confidence 8877666554421110000 0 456789999999999999999999999999887 578999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccc
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
.....++|..+++.+++++.++.||+..+++..+..++..+. .++ .+++++++++ +++..
T Consensus 153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~~--------------- 212 (399)
T PRK05122 153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVKGE-RLPFR--------------- 212 (399)
T ss_pred hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCCcc-chhHH---------------
Confidence 989999999999999999999999999887665543332222 111 1111111110 00000
Q ss_pred cccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceee
Q 009413 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFT 320 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 320 (535)
+..|+.+.. .........+.......+.++.
T Consensus 213 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T PRK05122 213 ------------------------------------------------RVLGRVWPYGMGLALASIGFGTIATFITLYYA 244 (399)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0011111111111111111110
Q ss_pred eecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 321 KQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK 400 (535)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (535)
+.. .. ..........++.++..++.+++. +|. ++.+.+..+..+.+++++.....
T Consensus 245 ------~~~----~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 245 ------ARG----WD-GAALALTLFGVAFVGARLLFGNLI----NRL-------GGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred ------Hcc----cc-cchHHHHHHHHHHHHHHHHHHHHH----HHh-------ccHHHHHHHHHHHHHHHHHHHHh---
Confidence 111 10 011111222233333334444432 332 22244556666666666555442
Q ss_pred HhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009413 401 RLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSS 480 (535)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~ 480 (535)
.+.+..++..++.|++.+...+.......+..|++.||+++|+.+....+|..+++.+.+.+.+.
T Consensus 300 -------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-- 364 (399)
T PRK05122 300 -------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-- 364 (399)
T ss_pred -------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 23445566778888988888888878888999999999999999999999999999999988762
Q ss_pred CCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 009413 481 SRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVML 518 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (535)
.+++..+++.+++.+++.+..+..
T Consensus 365 --------------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 365 --------------FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred --------------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 234566777777777766555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=230.45 Aligned_cols=352 Identities=13% Similarity=0.120 Sum_probs=235.7
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
+.+|+++.+.+..++..++++.+.++++.|+++++|+|..+.|+..+.+.++..+++++.|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999995 999999999988
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..++.++..+.+ +.+.+++.|.+.+.+.+...+...++..|.+|+ ++|++++++
T Consensus 83 ~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~g~ 136 (395)
T PRK10054 83 FASGFIAIPLVN-------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------------TSKTKIFSL 136 (395)
T ss_pred HHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------------hHHHHHHHH
Confidence 888888888877 777888888888887777788889999999887 578999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccc
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
.+...++|..++|.+++++.+ .+|+..|++.++..++..+......++.++++++++ . +..+ . ++
T Consensus 137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~----~--~~~~-~------~~- 201 (395)
T PRK10054 137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET----G--SVWS-P------SV- 201 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccch----h--hhhh-h------hh-
Confidence 999999999999999998875 699999998777666654444333322111111000 0 0000 0 00
Q ss_pred cccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeee
Q 009413 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTK 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
. .++++.....+...+............+.+..
T Consensus 202 ----------------~------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 234 (395)
T PRK10054 202 ----------------L------------------------------LQDKALLWFTCSGFLASFVSGAFASCISQYVM- 234 (395)
T ss_pred ----------------h------------------------------ccCceehHHHHHHHHHHHHHHHhhhhHHHHHH-
Confidence 0 01111111111111111111111111111111
Q ss_pred ecccccccCCCccccCccccc---cchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 009413 322 QGMTMKRNIGSNFKIPPATLQ---SAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVE 398 (535)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 398 (535)
... + .+.+..... ..+........ ....+..+| .++.+.+..++.+..+++......
T Consensus 235 ---~~~-~----~~~~~~~~g~~~~~~~~~~~~~~----~~~g~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~- 294 (395)
T PRK10054 235 ---VVA-D----SDFAEKVVAVVLPVNAAMVVSLQ----YSVGRRLNA-------ANIRPLMTAGTLCFVIGLVGFIFS- 294 (395)
T ss_pred ---Hhc-c----cchHHHHHHHHHHhhhhheeeeh----hHHHHHHcc-------CCchhHHHHHHHHHHHHHHHHHHc-
Confidence 000 0 111121111 11111111111 121122222 333355566766666666555432
Q ss_pred HHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 399 TKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+.+++..++.++|+....|..++.+.+..|++.|+++.+..+ ..++|..+||.++|.+.|
T Consensus 295 --------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 295 --------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 1234445566788899999989999999999999999999988765 566899999999999987
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=227.24 Aligned_cols=377 Identities=12% Similarity=0.143 Sum_probs=246.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 87 (535)
+.+....++.+.+++.+.+.++.|+++++|+|..+.|++.+.+.+...+.++++|+++|| +|||++++.+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999999999 5999999999999999998
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
.+...+ +++.+++.|+++|++.+...|...+++.|.+|+ ++|+++.++.+...+
T Consensus 92 ~~~~~~-------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~a~~~~~~~~~ 145 (400)
T PRK11646 92 TMAIAH-------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------------HQRGRFFSLLMMQDS 145 (400)
T ss_pred HHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------------HHHHHHHHHHHHHHH
Confidence 888776 888899999999999988889999999999988 679999999999999
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccC
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLP 247 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+|..+||.+++++. ..||++.|++.+...++..++.....++.+ ++++++ +.. +.....
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----~~~---~~~~~~------------ 204 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK-LSTVRT----PVR---EGMTRV------------ 204 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc-ccccch----hhH---HHHHHH------------
Confidence 99999999999998 679999999877665554333333222211 000000 000 000000
Q ss_pred CCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeeccccc
Q 009413 248 IDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMK 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
.++++ .+...... ..++..+.+....++.+ .+
T Consensus 205 -----------------------------------------~~~~~-~~~~~~~~---~~~~~~~~~~~~~~p~~---~~ 236 (400)
T PRK11646 205 -----------------------------------------LRDKR-FVTYVLTL---TGYYMLAVQVMLMLPIM---VN 236 (400)
T ss_pred -----------------------------------------HcCch-HHHHHHHH---HHHHHHHHHHHHhhhhh---HH
Confidence 01111 11111111 11111111111111111 11
Q ss_pred ccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009413 328 RNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407 (535)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (535)
...+ .....+.+..+............++ ..+| +.+..+.+..+.++.+++.+.+...
T Consensus 237 ~~~~--~~~~~g~l~~~~~~~~~~~~~~~~~----~~~~------r~~~~~~~~~~~~~~~~~~~~l~~~---------- 294 (400)
T PRK11646 237 DIAG--SPSAVKWMYAIEACLSLTLLYPIAR----WSEK------RFRLEHRLMAGLLIMSLSMFPIGMV---------- 294 (400)
T ss_pred hhcC--CchHHHHHHHHHHHHHHHHHHHHHH----HHHH------hcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence 1100 0111111222222222211111122 1211 1222344566666666666555442
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 009413 408 YSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSW 487 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~ 487 (535)
.+.+++.+..++.+++.+...|...+.+.+.+|++.||+++|+.+....+|..+|+.+.|++.+.++..
T Consensus 295 ------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~----- 363 (400)
T PRK11646 295 ------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL----- 363 (400)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-----
Confidence 133444455567788888888999999999999999999999999999999999999999998853210
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 009413 488 FSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520 (535)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (535)
+.....++..+.+.+++.+......+
T Consensus 364 -------~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
T PRK11646 364 -------NQPELPWMMLGIIGLITLLALYWQFS 389 (400)
T ss_pred -------CCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 11223455555555666555444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=225.49 Aligned_cols=379 Identities=13% Similarity=0.043 Sum_probs=237.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
+.......+++.+..+...... +.+.+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 94 (406)
T PRK11551 17 IGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHH
Confidence 3344445555555555544444 455678999999999999999999999999999999995 99999999999888888
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
+++.+.. +++.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.+.+.
T Consensus 95 ~~~~~~~-------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~ 148 (406)
T PRK11551 95 LATAQAW-------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------------RLRGTAVSLMYCGV 148 (406)
T ss_pred HHHHHhc-------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------------HHHHHHHHHHHHHH
Confidence 8888776 889999999999999999999999999999987 67999999999999
Q ss_pred hhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccccccc
Q 009413 167 CSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVL 246 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++|..+++.+++.+.+..+|++.|++..+..++..++.....++.++.+++++ ..++ .+...
T Consensus 149 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~-~~~~~------------- 210 (406)
T PRK11551 149 PFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG----AGKQ-RAPVL------------- 210 (406)
T ss_pred HHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC----cchh-hhhhH-------------
Confidence 99999999998888888899999988766544443333332222111110000 0000 00000
Q ss_pred CCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH-HHHHHHHHHhcCCCceeeeeccc
Q 009413 247 PIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW-TMLLMFAVIFQQPATFFTKQGMT 325 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
....+ . .+. ++........ ......+....+.+.+... .+
T Consensus 211 ---------~~~~~-~--------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g 251 (406)
T PRK11551 211 ---------RALFG-E--------------------------GRA-TATLLLWISYFFTLIVLYFLLNWLPSLLVG--QG 251 (406)
T ss_pred ---------HHHhh-h--------------------------hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC
Confidence 00000 0 000 1111111111 1111111212111111110 01
Q ss_pred ccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009413 326 MKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 405 (535)
.+ ....+.+.....++.++...+.+++.+++.+| +.+.++.+...+++..+..
T Consensus 252 ~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~--------- 304 (406)
T PRK11551 252 LS-------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAA--------- 304 (406)
T ss_pred CC-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHh---------
Confidence 11 01122233333344455555555554433222 2333444444444433332
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGR 485 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~ 485 (535)
..+.+.+.+..++.+++.....+..+++..|.+|++.|+++.|+.+....+|+.+|+.+.+.+.+.+
T Consensus 305 -------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~------ 371 (406)
T PRK11551 305 -------APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG------ 371 (406)
T ss_pred -------cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC------
Confidence 1233445556666777777777888899999999999999999999999999999999999987621
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 486 SWFSDDMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
+.....++....+.+++.+..+...
T Consensus 372 ---------~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 372 ---------RSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHHHh
Confidence 2234455555556666555555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=215.41 Aligned_cols=377 Identities=15% Similarity=0.148 Sum_probs=263.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+..++.+.+..|+...+=+.....+|. +.+++|+|..++|+.++.|.++..++.|+...+.|| +.||++++..+.+++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi 89 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFI 89 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHH
Confidence 455666777777777776666666644 556899999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++++++ |++.++++|++.|+..|.+++...++.++..|+ ++|+++.+...
T Consensus 90 ~~n~l~alAp-------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------------~~~~~Aiaiv~ 143 (394)
T COG2814 90 VSNLLSALAP-------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------------GKRGRALALVF 143 (394)
T ss_pred HHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------------cchhhHHHHHH
Confidence 9999999999 999999999999999999999999999999999 68999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSK 243 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.+..++.++|..++.++.+.+|||..|++.+.+.++.++..+...| +++.+++.+ .+..+..
T Consensus 144 ~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~--~~~~~~~-------------- 205 (394)
T COG2814 144 TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP--GPLRTLL-------------- 205 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC--cchhHHH--------------
Confidence 9999999999999999999999999999988888887777777666 111111110 0111000
Q ss_pred cccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeec
Q 009413 244 IVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQG 323 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
+. .++.+.........+.....+..|.+...++.+ .
T Consensus 206 -------------~~------------------------------l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-v 241 (394)
T COG2814 206 -------------RL------------------------------LRRPGVLLGLLATFLFMTGHFALYTYIRPFLES-V 241 (394)
T ss_pred -------------HH------------------------------hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHH-c
Confidence 00 011111222222233333344444333222111 0
Q ss_pred ccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 324 MTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLE 403 (535)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 403 (535)
.+.+. ...+++.....++.+++..+.+++.++ .+.+.+.....++.+.++.+.+.
T Consensus 242 ~g~s~-------~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------------~~~~~l~~~~~l~a~~~l~l~~~------ 296 (394)
T COG2814 242 AGFSV-------SAVSLVLLAFGIAGFIGNLLGGRLADR------------GPRRALIAALLLLALALLALTFT------ 296 (394)
T ss_pred cCCCH-------hHHHHHHHHHHHHHHHHHHHHhhhccc------------cchhHHHHHHHHHHHHHHHHHHh------
Confidence 11110 012223333444555555555554332 22344555667777777666553
Q ss_pred hhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009413 404 MNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRN 483 (535)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~ 483 (535)
..+.+..++..++.+++........+....+.. ++.+..+++++....++|..+|..++|.+.+
T Consensus 297 ---------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~------ 360 (394)
T COG2814 297 ---------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLD------ 360 (394)
T ss_pred ---------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 234455555556667766666666666666644 4669999999999999999999999999998
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009413 484 GRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKF 521 (535)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (535)
+.++....++.+.+.+++.++.+...++
T Consensus 361 ----------~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 361 ----------ALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred ----------hhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2445667777777777777666655443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=227.90 Aligned_cols=396 Identities=12% Similarity=0.007 Sum_probs=250.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|....+....++..++.......+|.+.+ +++.+..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~ 93 (417)
T PRK10489 16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCG 93 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHH
Confidence 455566666677777776666666666654 6788999999999999999999999999999995 99999988887777
Q ss_pred HHHHHHHhhcc--cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 84 VGLVALTSTAF--SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
++.+....... .+ +++.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++
T Consensus 94 ~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 150 (417)
T PRK10489 94 LGFIGLALNAFLPEP----------SLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------------ENLMQAGAI 150 (417)
T ss_pred HHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------------HHHHHHHHH
Confidence 76655442110 01 677888999999999888888888999999887 568999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccc
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
.+...++|..+||.+++.+.+..+|++.|++..+..++..++.+..++. + +++++++++..+..+....
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~~~~~~~~~~~~~~~~~~------- 219 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL-P---PPPQPREHPLRSLLAGFRF------- 219 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC-C---CCCcccccchHHHHHHHHH-------
Confidence 9999999999999999999888899999988776665554443332211 1 1111000011110000000
Q ss_pred cccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeee
Q 009413 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTK 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
..+.+......................+.
T Consensus 220 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 248 (417)
T PRK10489 220 -----------------------------------------------LLASPVVGGIALLGGLLTMASAVRVLYPA---- 248 (417)
T ss_pred -----------------------------------------------HHcChHHHHHHHHHHHHHHHHhHHHhhHH----
Confidence 00111111111111111111111111111
Q ss_pred ecccccccCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 322 QGMTMKRNIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK 400 (535)
Q Consensus 322 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (535)
.....++ .+ ...+.+.....++.+++..+.+++ .+| .++.+.+..+.++.+++++.+..
T Consensus 249 ---~~~~~~g--~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~---- 308 (417)
T PRK10489 249 ---LADEVWQ--MGAAQIGLLYAAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGL---- 308 (417)
T ss_pred ---HHHhccC--CChhHhHHHHHHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHc----
Confidence 1111111 11 112222233334444444444332 221 12223455666666666554443
Q ss_pred HhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009413 401 RLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSS 480 (535)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~ 480 (535)
..+.+...+..++.+++.+...+..++++.+..|++.||+++|+++..+.+|..+|+.+.|++.+..
T Consensus 309 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~- 375 (417)
T PRK10489 309 ------------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM- 375 (417)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-
Confidence 2244455667777888888877888899999999999999999999999999999999999988732
Q ss_pred CCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 009413 481 SRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNEAC 534 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 534 (535)
+....++..+++.++..++.....++++++++||+++..
T Consensus 376 ---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 376 ---------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 223445555556556556666666888888888776643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=223.39 Aligned_cols=375 Identities=12% Similarity=0.085 Sum_probs=240.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.+.++.+.+..++...+.....+.+|.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ ||||+++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 35567777777788887777888899999999999999999999999999999999999999995 99999999988776
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+........+.. ...+++.++++|+++|++.+...+...+++.|.+|+ ++|+++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~a~~~~~ 154 (392)
T PRK12382 93 LAGLAYLLAAILPVS-----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------------KHSGKVMSWNG 154 (392)
T ss_pred HHHHHHHhhhccccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------------cccchhhhHHH
Confidence 655433222100000 000678899999999999998888888999999987 67899999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSK 243 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.+.++|..++|.+++++.++.||++.+.+..+..++... ..+ +.++++++++ ++++..+..+
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-~~~~~~~~~~------------- 216 (392)
T PRK12382 155 MAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAG-ERPSLWSVVG------------- 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcc-cCchHHHHHH-------------
Confidence 999999999999999998889999877655443222221 111 1111111111 0000000000
Q ss_pred cccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeec
Q 009413 244 IVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQG 323 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
...+.... .......+.......+.++.
T Consensus 217 ---------------------------------------------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~--- 244 (392)
T PRK12382 217 ---------------------------------------------LIWKPGLG----LALQGVGFAVIGTFVSLYFA--- 244 (392)
T ss_pred ---------------------------------------------HHHHhHHH----HHHHHHHHhHHHHHHHHHHH---
Confidence 00000000 01111111111111111110
Q ss_pred ccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 324 MTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLE 403 (535)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 403 (535)
+.. .. ...........+.++..++.+++. +|. ++.+.+..+..+.++++.+....
T Consensus 245 ---~~~----~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~-------g~~~~~~~~~~~~~~~~~~~~~~------ 299 (392)
T PRK12382 245 ---SKG----WA-MAGFTLTAFGGAFVLMRVLFGWMP----DRF-------GGVKVAIVSLLVETVGLLLLWLA------ 299 (392)
T ss_pred ---hcC----Cc-hhHHHHHHHHHHHHHHHHHHHHHH----Hhc-------CCCeehHHHHHHHHHHHHHHHHc------
Confidence 101 11 011111222233334444444433 332 22244556666666666554432
Q ss_pred hhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009413 404 MNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRN 483 (535)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~ 483 (535)
.+.+...+..++.+++.+...+...+...+..|++.||++.|+.+....+|+.+++.+.+++.+.
T Consensus 300 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~----- 364 (392)
T PRK12382 300 ----------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS----- 364 (392)
T ss_pred ----------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 23345556677788888888888888889999999999999999999999999999999998872
Q ss_pred CCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 009413 484 GRSWFSDDMKEARLDLYYWVLALASALSLLLYVML 518 (535)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (535)
.++...|.+.+++.+++.++.++.
T Consensus 365 -----------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 365 -----------FGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -----------hCchHHHHHHHHHHHHHHHHHHhh
Confidence 234567777777777776665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=226.71 Aligned_cols=178 Identities=11% Similarity=0.013 Sum_probs=155.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|.++.+++..++..+..+.+.+.+|.+.+ ++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 457788888888888888888888887775 6999999999999999999999999999999995 99999999998998
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+.+.+++ +.+.++++|+++|++.+...|...+++.|.+|+ ++|+++.++.+
T Consensus 87 ~~~~~~~~~~-------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 140 (471)
T PRK10504 87 LGSLFCALSG-------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------------EQYMAAMTFVT 140 (471)
T ss_pred HHHHHHHHhC-------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------------HHHHHHHHHHH
Confidence 8888887776 888999999999999999999999999999988 67899999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
...++|..++|.+++++.++.|||+.|.+..+...+..+......+
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999887765555544444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=228.22 Aligned_cols=407 Identities=13% Similarity=0.060 Sum_probs=225.4
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccc-cccccCccccchHHHHHHH
Q 009413 37 KMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSW-AWSTTNKISSSSAFLFWSL 115 (535)
Q Consensus 37 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 115 (535)
+.++.+.+++.+.+.++..++++++|+++||+ ||||+++.+.+++.++.+.+++....- ....++.. ....++++|
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R 127 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTG--YVPEFVIYR 127 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchh--HHHHHHHHH
Confidence 88999999999999999999999999999995 999999999999988887776532100 00000000 456788999
Q ss_pred HHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc--------cccchh
Q 009413 116 CLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ--------DTFGWV 187 (535)
Q Consensus 116 ~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~--------~~~gw~ 187 (535)
+++|++.|+..|...++++|++|+ ++|+++.+..+.+..+|..+++.++..+. +..|||
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~-------------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 194 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPA-------------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR 194 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCCh-------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence 999999999999999999999998 67999999999999999999887765432 456899
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccc
Q 009413 188 LGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGN 267 (535)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (535)
+.|++.++..++..+..++. ++.++....+. ..++..+.......... ......+.+.
T Consensus 195 ~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~---- 252 (479)
T PRK10077 195 YMFASEAIPALLFLMLLYFV-PETPRYLMSRG----KQEQAEGILRKIMGNTL-------------ATQALQEIKH---- 252 (479)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcC----CHHHHHHHHHHHcCChh-------------HHHHHHHHHH----
Confidence 99998776665554433332 22111100000 11111111100000000 0000000000
Q ss_pred cCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceee--eecccccccCCCccccC-ccccccc
Q 009413 268 KKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFT--KQGMTMKRNIGSNFKIP-PATLQSA 344 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~ 344 (535)
...+ + ....+..+...............+.+...... .+........+ .... .......
T Consensus 253 -------~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g--~~~~~~~~~~~~ 314 (479)
T PRK10077 253 -------SLDH--------G-RKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG--ASTDIALLQTII 314 (479)
T ss_pred -------HHHH--------h-hhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcC--CCCchHHHHHHH
Confidence 0000 0 00000111110000100000011111110000 00000001111 1111 1111222
Q ss_pred hhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHH
Q 009413 345 ITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYI 424 (535)
Q Consensus 345 ~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (535)
.....++..++..++.+++.+ .+.+..+.+++.+++..+...... .....+.....+
T Consensus 315 ~~~~~~i~~~~~g~l~dr~g~-----------r~~~i~~~~~~~v~~~~l~~~~~~------------~~~~~~~~~~~~ 371 (479)
T PRK10077 315 VGVINLTFTVLAIMTVDKFGR-----------KPLQIIGALGMAIGMFSLGTAFYT------------QAPGIVALLSML 371 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----------hHHHHHhHHHHHHHHHHHHHHHhc------------CcccHHHHHHHH
Confidence 233334444444444333322 245666777777776665442110 111122333334
Q ss_pred HHHHHHHH-HhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHH
Q 009413 425 LLGISDIF-TVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWV 503 (535)
Q Consensus 425 l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (535)
+.+.+... ..|..+.++.|.+|++.|++++|+.+..+++++.+++.+.+.+.+ ++|..+ +.+....|++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~~~---~~~~~~~~~~ 441 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWLVA---HFHNGFSYWI 441 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccchhh---hccCccHHHH
Confidence 44444433 346778999999999999999999999999999999988876552 011111 1112345666
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccc
Q 009413 504 LALASALSLLLYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 532 (535)
++++++++.++.+.+.+|.++++.||.++
T Consensus 442 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 470 (479)
T PRK10077 442 YGCMGVLAALFMWKFVPETKGKTLEEMEA 470 (479)
T ss_pred HHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 66777777777777778888887766543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=233.63 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=132.6
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCcc
Q 009413 25 ASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKI 104 (535)
Q Consensus 25 ~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (535)
.....+++.+++|++..+.+++.+++.++..++++++|+++||+ |||++++.++++.+++.+++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 45566777789999999999999999999999999999999995 999999999999999998888887
Q ss_pred ccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccc-
Q 009413 105 SSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDT- 183 (535)
Q Consensus 105 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~- 183 (535)
+++.++++|++.|+|.|+..|...++++|.+|+ ++|++..++......+|.++++.++..+...
T Consensus 254 --s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------------~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 254 --GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------------EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999998 6799999999999999999998876554322
Q ss_pred ------------cchhHHHHHHHHHHHHHHHHHH
Q 009413 184 ------------FGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 184 ------------~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
.+||+.+++.++..++.+++.+
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3689988887766555544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=226.53 Aligned_cols=400 Identities=12% Similarity=0.095 Sum_probs=236.0
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.+..+++..++..... .+.+...+.+.+++|.+..+.+|+.+.|.++..++.++.|+++|| +|||++++.+.+++.++
T Consensus 7 ~~~~~~~~~~~~~ld~-tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 7 TLVIIVLVYIPVAIDA-TVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 3344555555555544 344444556677999999999999999999999999999999999 59999999999999999
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
.++++.++ |.+.++++|+++|+|.+...|.....+.+.+++ + ++|+++.+++...
T Consensus 85 ~~~~~~a~-------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-------~-----~~r~~~~g~~~~~ 139 (495)
T PRK14995 85 SLAAAFSP-------------TASWLIATRALLAIGAAMIVPATLAGIRATFTE-------E-----KQRNMALGVWAAV 139 (495)
T ss_pred HHHHHHcC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------H-----HHHHHHHHHHHHH
Confidence 99999988 999999999999999999888888888777644 1 5799999999999
Q ss_pred hhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHH---HHHHHHhccccc
Q 009413 166 VCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQ---AIKAAASKLKNS 242 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 242 (535)
.++|..+||.+++++.++.|||+.|++.....++.+++.+...++.++++.+ +. +....... ............
T Consensus 140 ~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~-~~--d~~g~~~~~~~~~~l~~~~~~~~ 216 (495)
T PRK14995 140 GSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQ-PL--NLGHALMLIVAILLLVYSAKTAL 216 (495)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CC--ChHhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998776666555544444432211111 10 11111100 000000000000
Q ss_pred ccccCCCCCCccchhhccccccccccCCCCC-cccccccCCCCCCcchhhhHHHhhHHhHHHHH-HHHHHHhcCCCceee
Q 009413 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSS-KELDEDEYPKSGNHLVKNAKVVLKLFPIWTML-LMFAVIFQQPATFFT 320 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 320 (535)
.... . ....... ...+....... ......++|-.+-+..++ +.........+.. ..+..... +++
T Consensus 217 ~~~~----~--~~~~~~~--~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~-~~~~~~~~~~~~~~~~~~~~~~----~~~ 283 (495)
T PRK14995 217 KGFL----S--LWVTSLT--LLTGALLLGLFIRTQLAASRPMIDMRLFTH-RIILSGVVMAMTAMITLVGFEL----LMA 283 (495)
T ss_pred ccCC----c--hHHHHHH--HHHHHHHHHHHHHHHhcCCCCCcCHHHhCC-cccHHHHHHHHHHHHHHHHHHH----HHH
Confidence 0000 0 0000000 00000000000 000000000000000111 1111111111111 11111110 011
Q ss_pred eecccccccCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009413 321 KQGMTMKRNIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVET 399 (535)
Q Consensus 321 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 399 (535)
. +.....+ ++ ...+.......+...+..++.+++.+++. +.+.+..+.++..+++..+.....
T Consensus 284 ~---~lq~v~g--~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g-----------~~~~~~~g~~~~~~~~~~l~~~~~ 347 (495)
T PRK14995 284 Q---ELQFVHG--LSPLEAGMFMLPVMVASGFSGPIAGILVSRLG-----------LRLVATGGMALSALSFYGLAMTDF 347 (495)
T ss_pred H---HHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------chHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1111000 01 11222222333445555556555443322 223455666666666654443210
Q ss_pred HHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 400 KRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+...+..++.|+|.+...+.....+.+..|++.++.++++.++.+.+|+.+|+.+.+.+.+
T Consensus 348 -------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 -------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334456677888999999998888999999999999999999999999999999999988765
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=217.91 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=125.7
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCcc
Q 009413 25 ASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKI 104 (535)
Q Consensus 25 ~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (535)
.....+.+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||++++.+.+....+.+.....+
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~----------- 77 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDPF----------- 77 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 34445666779999999999999999999999999999999995 999987766555544433223224
Q ss_pred ccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcccc
Q 009413 105 SSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF 184 (535)
Q Consensus 105 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~ 184 (535)
++..+++.|+++|+|.+. .+.....++|++|+ ++|+++.++.+.+.++|..+++.+++++.++.
T Consensus 78 --~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~-------------~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~ 141 (368)
T TIGR00903 78 --NYEWLLACQLLAALGQPF-LLNAFAPAASQIRE-------------ERRDLVISLLSFAMYLGIIFALAAGLKIYTAG 141 (368)
T ss_pred --cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888999999999999986 45566667999998 68999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccc
Q 009413 185 GWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
|||+.|.+.++..++..++.+...+
T Consensus 142 gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 142 GLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998866655544444444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=222.13 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=137.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHh
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTS 91 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~ 91 (535)
+..++..+..+.+...++.+ .+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHH
Confidence 33333333333444445544 457999999999999999999999999999999995 9999999999999999988888
Q ss_pred hcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhh
Q 009413 92 TAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSL 171 (535)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 171 (535)
++ +++.+++.|++.|++.|...+...+++.|++|+ ++|+++.++++.+.++|..
T Consensus 108 ~~-------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------------~~rg~~~~~~~~~~~~g~~ 161 (434)
T PRK11663 108 SS-------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------------TERGGWWAIWNTAHNVGGA 161 (434)
T ss_pred Hh-------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------------HHHHHHHHHHHHHHHHHHH
Confidence 87 888999999999999999899999999999998 6799999999999999999
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 172 LGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 172 i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
++|.+++++.+++|||+.|++.++..++.
T Consensus 162 ~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 162 LIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999998899999998877654443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=217.00 Aligned_cols=372 Identities=13% Similarity=0.069 Sum_probs=233.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
..++..+.+-.++.+.+.+| .+++++|+|.++.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 33444444444455555554 56679999999999999999999999999999999995 99999999999999999999
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
++++ +++.++++|+++|+|.+...+....++.+++|+ +|+++.+.+..+.++|
T Consensus 92 ~~a~-------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~--------------~~~~~~g~~~~~~~~g 144 (393)
T PRK09705 92 ELYP-------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ--------------RTPLVMGLWSAALMGG 144 (393)
T ss_pred HHCc-------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc--------------cchhHHHHHHHHHHHH
Confidence 9998 899999999999999999999989999988765 5899999999999999
Q ss_pred hhhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCC
Q 009413 170 SLLGVTVMSYIQDTF-GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPI 248 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
..+++.+++++.++. +||..+.+..+..++.....+...++ +++++++ + +
T Consensus 145 ~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~---------------~-------- 195 (393)
T PRK09705 145 GGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSHK--T---------------T-------- 195 (393)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccC--C---------------C--------
Confidence 999999999888775 79988765444433333222222111 1111100 0 0
Q ss_pred CCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceeeeeccccc
Q 009413 249 DNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMK 327 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
. .. +.. .+++ +.+.. +........+.....+.+.++.+ .+.+
T Consensus 196 --~--~~------~~~------------------------l~~~-~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s 238 (393)
T PRK09705 196 --T--TP------VRV------------------------VFTP-RAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS 238 (393)
T ss_pred --c--CC------ccc------------------------ccCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC
Confidence 0 00 000 0111 11111 11111222222223223322211 1111
Q ss_pred ccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009413 328 RNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407 (535)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (535)
....+.......++.+++..+.+++ .+|. ++.+.+.+++.+..++.+.+...
T Consensus 239 -------~~~ag~~~~~~~i~~i~g~~~~g~l----~~r~-------~~~~~~~~~~~l~~~~~~~~~~~---------- 290 (393)
T PRK09705 239 -------AQYSGSLLALMTLGQAAGALLMPAM----ARHQ-------DRRKLLMLALVLQLVGFCGFIWL---------- 290 (393)
T ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHHH----Hhhc-------cchHHHHHHHHHHHHHHHHHHHc----------
Confidence 0112223333344445555554443 3332 22244555666666665544322
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 009413 408 YSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-VRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRS 486 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~ 486 (535)
+.+.... ..++.+++.+...|.......+..| ++.+|+.+|+.+....+++.++|.+.+++.|.+
T Consensus 291 -----~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~------- 356 (393)
T PRK09705 291 -----PLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS------- 356 (393)
T ss_pred -----cchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 1111111 1234566666666766666666764 678999999999999999999999999998843
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009413 487 WFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRT 526 (535)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 526 (535)
+.+...|...++++++..+..+.+.+|++.|+
T Consensus 357 --------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 357 --------GNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 22445666666666666666666666555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=218.77 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=138.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
+...+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 4445668889999999999999999999999999999999995 999999999999999999888887
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g 185 (535)
+++.++++|++.|++.+...+...+++.|.+|+ ++|+++.++.+...++|..++|.+++++.+..+
T Consensus 81 -~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 81 -AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------------SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred -CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------------HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999998 679999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 009413 186 WVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 186 w~~~f~~~~~~~~~~~~~~~~~ 207 (535)
|++.|++.++..++..+..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 147 WQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred chHHHHHHHHHHHHHHHHhhhe
Confidence 9999988776655544444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=221.90 Aligned_cols=165 Identities=13% Similarity=0.160 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
+++.+....+..+...+..+.. ....+++++++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3455555566666666665444 4455677789999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
+++.+.+.++. +.+.++++|++.|++.|...+....++.|.+|+ ++|+++.++.
T Consensus 94 ~~~~~~~~~~~-------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------------~~r~~~~~~~ 147 (426)
T PRK12307 94 SVGTGLSGLAS-------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------------HLKSKASAFL 147 (426)
T ss_pred HHHHHHHHHHh-------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------------hHhhHhhhHH
Confidence 99999888887 889999999999999999999999999999998 6789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTI 195 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~ 195 (535)
+.+..+|.++++.+.+++.+..+||+.|++..+
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 999999999999999998888999999987544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=219.29 Aligned_cols=178 Identities=10% Similarity=0.072 Sum_probs=147.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|+.++.+.+..+++......+ .+..+.+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||+++..+++++.
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWG 84 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHH
Confidence 344444444444444444333 4455689999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++++++ +.+.+++.|+++|++.|...|....++.|++|+ ++|+++.++++
T Consensus 85 ~~~~~~~~~~-------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------------~~rg~~~~~~~ 138 (412)
T TIGR02332 85 IASTATMFAT-------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------------YFRARANALFM 138 (412)
T ss_pred HHHHHHHHhc-------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------------HHHHHHHHHHH
Confidence 9999999887 889999999999999999999999999999998 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhcc------ccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 164 FGVCSGSLLGVTVMSYIQD------TFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.++..+
T Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 139 IAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999988753 369999999877665554444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=213.51 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHH-HHHHHHHHHHHH
Q 009413 11 IVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILA-FSFIYVVGLVAL 89 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~-~~~~~~~~~~~~ 89 (535)
.+..++..++.....+.++.|+++++|.|..+.+++.+.+.+...+.+++.|+++||+ ||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777788888889999999999999999999999999999999999999999995 99887654 555555666677
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhh--hhhhhhhHhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSL--FFKWWYFGVC 167 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~ 167 (535)
++++ +++.+++.|+++|.+.+...|...++..|..|+ ++|.+ ..+..+...+
T Consensus 82 ~~~~-------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 82 AWNR-------------NYFLLLVLGVLLSSFASTANPQLFALAREHADR-------------TGREAVMFSSVMRAQIS 135 (375)
T ss_pred Hhcc-------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-------------cchhhHHHHHHHHHHHh
Confidence 7766 888888899998888788888888888887765 23333 3567777889
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+|..++|.+++++.++.|||+.|++.++..++..+..+.
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999887765555444443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=222.71 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhh-HHH-----HHHHHHHHHhhhhhhhHHhhhhcccchHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSS-AAK-----TVNSWCGFTSMLPLVLAPLADSYWDRYSTILA 77 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~ 77 (535)
+|.++...+..+++.+.+.. ..+..+++.++++.+.+. .++ +.+...++..+++++.|+++||+ |||+++..
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 34455566777777777654 455667888888644322 122 24666788899999999999995 99999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCccccchH--------HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCc
Q 009413 78 FSFIYVVGLVALTSTAFSWAWSTTNKISSSSA--------FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDN 149 (535)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (535)
++++++++.+++++++ ++. .+++.|+++|+|.|+..+...++++|++|+
T Consensus 93 ~~~l~~i~~~~~a~~~-------------~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~---------- 149 (490)
T PRK10642 93 TIVIMSISTFCIGLIP-------------SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD---------- 149 (490)
T ss_pred HHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC----------
Confidence 9999999999999987 554 388999999999999999999999999998
Q ss_pred ccccchhhhhhhhhhHhhhhhhhhhhhhhhhc--------cccchhHHHHHHHHHHH
Q 009413 150 QKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ--------DTFGWVLGFAIPTIAMV 198 (535)
Q Consensus 150 ~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~--------~~~gw~~~f~~~~~~~~ 198 (535)
++|+++.++...+..+|..+|+.+...+. ..+|||+.|++..+..+
T Consensus 150 ---~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 150 ---RKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 67899999888888888887776554332 25799999998665433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=216.93 Aligned_cols=351 Identities=13% Similarity=0.017 Sum_probs=219.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
.....+...+.....|.. +.+.+++.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~ 82 (377)
T TIGR00890 5 VLVGTVIMCFTSGYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGF 82 (377)
T ss_pred EeHHHHHHHHHhhHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHH
Confidence 333333333333334443 4556788889999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
+++++++ +.+.++++|++.|++.+...+.....+.+++|+ +|+++.++...+.
T Consensus 83 ~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 135 (377)
T TIGR00890 83 TFYAIAD-------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------------KRGLASGIIIGGY 135 (377)
T ss_pred HHHHHHH-------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------------ccHHHHHHHHHhc
Confidence 9999888 899999999999999998888888888888765 5799999999999
Q ss_pred hhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccccccc
Q 009413 167 CSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVL 246 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++|..+++.+.+.+.+..|||+.|++.++..++..+..+...++.+++++++++ ...+
T Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------- 193 (377)
T TIGR00890 136 GLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI---EVSV------------------- 193 (377)
T ss_pred chhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc---ccch-------------------
Confidence 999887777777777778999999987776655444433332221111100000 0000
Q ss_pred CCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccc
Q 009413 247 PIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTM 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
++.++.+ . .++ +..+......+.......... ..+..+
T Consensus 194 -------~~~~~~~---~------------------------~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~---- 231 (377)
T TIGR00890 194 -------KDYTVWE---M------------------------LRT-PQFWVLYLSFFLNAVSGLLLI---GLYKPY---- 231 (377)
T ss_pred -------hhhhHHH---H------------------------HcC-ccHHHHHHHHHHHhHHHHHHH---HHHHHH----
Confidence 0000000 0 011 111111111111111100010 000100
Q ss_pred cccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009413 327 KRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 327 ~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 405 (535)
..+++ .+. ....+.....+..++..++.+++.+++.|| +.+..+.++..++.+......
T Consensus 232 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~~------- 291 (377)
T TIGR00890 232 GQSLG--LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----------KTMSIVFGISAVGMAAMLFIP------- 291 (377)
T ss_pred HHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHHHHHHHHHHcc-------
Confidence 01110 010 112233344445555555666654443322 345556666666655444321
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
...........++.+++.+...+...++..|.+|++.|+++.|+.+....+|+.+++.+.+.+.+
T Consensus 292 -------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 292 -------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred -------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222233334555666666666677888999999999999999999999999999999998876
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=212.85 Aligned_cols=356 Identities=14% Similarity=0.082 Sum_probs=230.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
+....++..++.......+|.|.. +++.|..+.+++.+.+.++..+++++.|+++||+ ||||+++.+.++..++..+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455666666666666677777776 5899999999999999999999999999999995 99999999988887777666
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
.+...... .+.+.+++.|++.|++.+...|...+++.|.+|+ ++|+++.++.+.+.++|
T Consensus 82 ~~~~~~~~--------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 82 PFVALLGG--------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------------EQLTQANSLSQAVRSLF 140 (365)
T ss_pred HHHHHcCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHhHHHHHHHHH
Confidence 65531110 0678899999999999999999999999999998 67999999999999999
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHH-HHHHHHHHHHhcccccccccCC
Q 009413 170 SLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLI-NIVQAIKAAASKLKNSKIVLPI 248 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
..++|.+++++.+..||++.|++..+..++..+..+..+.+.+++ ++++ +.+ +..+...+.
T Consensus 141 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~------------- 202 (365)
T TIGR00900 141 YIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQ----ALSNAVLRDTREG------------- 202 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-cccc----ccchhHHHHHHhH-------------
Confidence 999999999999989999999887766555544433332211111 0111 000 000000000
Q ss_pred CCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH-HHHHHHHHHh-cCCCceeeeecccc
Q 009413 249 DNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW-TMLLMFAVIF-QQPATFFTKQGMTM 326 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 326 (535)
+.. ..+.+......... .......... ...+. +.
T Consensus 203 ---------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------ 238 (365)
T TIGR00900 203 ---------IKF----------------------------VLKNPLLRTLLLLALLFNLVFAPAIVALFPY-VQ------ 238 (365)
T ss_pred ---------HHH----------------------------HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHH-HH------
Confidence 000 00111111111111 1111111111 11111 11
Q ss_pred cccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009413 327 KRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQ 406 (535)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 406 (535)
...++. -....+.+.....++.++...+.+++ .+|. ++.+.+..+.++.++.+......
T Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------- 297 (365)
T TIGR00900 239 SKYLGR-GSTHYGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLT--------- 297 (365)
T ss_pred HHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhh---------
Confidence 110000 00111222233333444444444433 2332 22234455555555555544432
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 407 QYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
+.+.+...+..++.+++.+...+...++..|..|++.|+++.|+.+....++..+++.+.+.+.|
T Consensus 298 ------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 298 ------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11255667778888999999999999999999999999999999999999999999999998876
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=219.59 Aligned_cols=380 Identities=18% Similarity=0.138 Sum_probs=241.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhh-----HHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSS-----AAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFS 79 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 79 (535)
|....+++..++...++....+.++.|++ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 45566677788888888888888999886 58888654 48888999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++..++.+++...+ +++.+++.|++.|++.+ ..+...+++.|.+|+ ++|+++.
T Consensus 92 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~ 144 (408)
T PRK09874 92 LGMGIVMVLMGLAQ-------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR-------------NKSGWAL 144 (408)
T ss_pred HHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-------------hhhhHHH
Confidence 88888888877776 88899999999999754 567778888998887 5789999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcc
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKL 239 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
+..+.+.++|..++|.+++.+.+..+|++.|++..+..++..+..+...++.++ +++++ ...+..+ . .+
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~-~---~~-- 213 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKK---EMLHMRE-V---VT-- 213 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccch---hhhHHHH-H---HH--
Confidence 999999999999999999999888999999988777665554444333322111 11110 0000000 0 00
Q ss_pred cccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCcee
Q 009413 240 KNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFF 319 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 319 (535)
. .++++.....+..... ...........+
T Consensus 214 ------------------~------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 242 (408)
T PRK09874 214 ------------------S------------------------------LKNPKLVLSLFVTTLI---IQVATGSIAPIL 242 (408)
T ss_pred ------------------h------------------------------CcCCchHHHHHHHHHH---HHHHHHHHHHHH
Confidence 0 0011111111111110 001111111111
Q ss_pred eeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009413 320 TKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVET 399 (535)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 399 (535)
..+.......... .....+.+..+..++.++..+..+++.+ | .++.+.+..+..+..+..+.....
T Consensus 243 ~~~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~~~g~l~d----r-------~g~~~~~~~~~~~~~~~~~~~~~~-- 308 (408)
T PRK09874 243 TLYVRELAGNVSN-IAFISGMIASVPGVAALLSAPRLGKLGD----R-------IGPEKILITALIFSVLLLIPMSFV-- 308 (408)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-------cccchhHHHHHHHHHHHHHHHHHh--
Confidence 1100000000000 0000111112222333344444444332 2 222244555555555544443331
Q ss_pred HHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009413 400 KRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALS 479 (535)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~ 479 (535)
.+.+.+.+..++.|++.+...|...+...+..|++.||+..++.+....+|..+|+.+.+.+.+.
T Consensus 309 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~- 373 (408)
T PRK09874 309 --------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN- 373 (408)
T ss_pred --------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-
Confidence 23445566677889999998999999999999999999999999999999999999999988761
Q ss_pred cCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 480 SSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
.++...|++.+++.+++.+..+...
T Consensus 374 ---------------~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 374 ---------------YGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2346677777777777776665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=212.13 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=145.3
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|+.+..+.+..++.....|.....++. +.+++|+|+++.++..+.+.++..+++++.|+++||+ |||++++.+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~ 96 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHH
Confidence 444455555555555555555566655 4568999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++.+++ +++.+++.|+++|++.|...|...+++.|++|+ ++|+++.++..
T Consensus 97 ~~~~~~~~~~-------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------------~~~~~a~~~~~ 150 (394)
T PRK10213 97 LSCLLVSFAN-------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------------RTVPKALSVIF 150 (394)
T ss_pred HHHHHHHHHC-------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------------hHHHHHHHHHH
Confidence 9988888876 899999999999999999999999999999988 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
.+.++|..++|.+++++.+++|||+.|++.++..++.
T Consensus 151 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~ 187 (394)
T PRK10213 151 GAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLC 187 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876654443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=219.23 Aligned_cols=176 Identities=16% Similarity=0.062 Sum_probs=132.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDV-----VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFS 79 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 79 (535)
+.+.++.+..+...+....+....+. +.++ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~ 93 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 44444555555555554444333333 3322 345667789999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
+++.++.++++++.... +.. +...++++|+++|++.|+..+..+.+++|.+|+ ++|+++.
T Consensus 94 ~~~~v~~~~~~~~~~~~-----~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------------~~Rg~~~ 153 (502)
T TIGR00887 94 IIMIIATVASGLSPGSS-----PKS--VMATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------------KWRGAMM 153 (502)
T ss_pred HHHHHHHHHHHHccCcc-----cch--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------------hhHHHHH
Confidence 99999988888765210 000 267899999999999999999999999999999 6899999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhcc-----------------------ccchhHHHHHHHHHHHHHHH
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQD-----------------------TFGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~-----------------------~~gw~~~f~~~~~~~~~~~~ 202 (535)
++.+....+|..+++.++..+.. ..+||+.|.+..+..++..+
T Consensus 154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999998887764421 24799999877665544433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=211.84 Aligned_cols=355 Identities=12% Similarity=0.055 Sum_probs=220.2
Q ss_pred cchHHHHHHHHHHhhh---hhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERF---AFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSF 80 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 80 (535)
++..+.+++...++.. +...+.+.++. +.+++|.|..+.++..+.+.++..+++++.|+++||+ ||||+++.+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 3334444444444443 33334444444 4578999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 81 IYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+..++.+.+..++ +.+.+++.|+++|++.+...+...+++.|.+|+ ++|.+..+
T Consensus 87 ~~~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~ 140 (406)
T PRK15402 87 FFILTCLAILLAQ-------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------------ADAIKITA 140 (406)
T ss_pred HHHHHHHHHHHHc-------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------------hHHHHHHH
Confidence 9999888888877 888999999999999998888889999999987 56778888
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccc
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLK 240 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
..+....+|..++|.+++++.++.+|++.|++.++..++..+..+...++.+++++++. +..+..+.....
T Consensus 141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 211 (406)
T PRK15402 141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKL----SLKELGRDYKLV----- 211 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccc----cHHHHHHHHHHH-----
Confidence 88888888999999999999888899999988776665554443333322111111100 111000000000
Q ss_pred ccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceee
Q 009413 241 NSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFT 320 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (535)
.++++.....+...+............+.+
T Consensus 212 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 241 (406)
T PRK15402 212 ------------------------------------------------LKNRRFVAGALALGLVSLPLLAWIALSPVI-- 241 (406)
T ss_pred ------------------------------------------------HcCcHHHHHHHHHHHHHHHHHHHHHHhHHH--
Confidence 011111111111111111111111111111
Q ss_pred eecccccccCCCccccCccc---cccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009413 321 KQGMTMKRNIGSNFKIPPAT---LQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397 (535)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 397 (535)
.... .+.++.. .......+.+++.++.+++.+ | .++.+.+.++.++..++.......
T Consensus 242 -----~~~~----~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~----r-------~~~~~~~~~~~~~~~~g~~~~~~~ 301 (406)
T PRK15402 242 -----LISG----EQLSSYEYGLLQVPVFGALIAGNLTLARLTS----R-------RPLRSLIRMGLWPMVAGLLLAALA 301 (406)
T ss_pred -----HHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-------cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111111 111122233334444444332 2 222345566766666666555443
Q ss_pred HHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
... ...+.+++++..++.+++.+...+..+...... +++.||++.++.++.+.++..+|+.+.+.+.+
T Consensus 302 ~~~-----------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 302 TVI-----------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHc-----------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 110 012455667788888999988777766655444 44889999999999999999999999998765
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=213.01 Aligned_cols=166 Identities=19% Similarity=0.329 Sum_probs=145.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Q 009413 11 IVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALT 90 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~ 90 (535)
++..++..+......+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556666667666667777688899999999999999999999999999999999995 999999999999999966655
Q ss_pred hhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhh
Q 009413 91 STAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGS 170 (535)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 170 (535)
+++ +.+.++++|++.|++.+...+...+++.|.+|+ ++|++.+++.+.+.++|.
T Consensus 81 ~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 81 FAS-------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP-------------EERGRAFGILSAGFSLGS 134 (352)
T ss_dssp HHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------------CCHHHHHHHHHHHHHHHH
T ss_pred hhh-------------hHHHHhhhccccccccccccccccccccccchh-------------hhhhhccccccchhhhhh
Confidence 554 777999999999999999999999999999998 679999999999999999
Q ss_pred hhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 009413 171 LLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 171 ~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
.++|.+++++.+..+|++.|++.++..++..++
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhh
Confidence 999999999998999999999988877766554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=214.15 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=129.4
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhc--CCChhhHHHHHH-----HHHHHHhhhhhhhHHhhhhcccchHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVV--KMSNSSAAKTVN-----SWCGFTSMLPLVLAPLADSYWDRYSTI 75 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~~s~~~~~~~~~-----~~~~~~~~~~~~~G~laDr~~Grk~~~ 75 (535)
++|.+....+..+++.+.+..+....+.++.+++ +.++. .+++.+ ...++..+++++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3455555666777777776655555556666655 66666 454432 23455667788889999995 999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCccccchH--------HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcC
Q 009413 76 LAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSA--------FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTT 147 (535)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~ 147 (535)
..+.++++++.+++++++ ++. .+++.|+++|++.|+..|....++.|.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------- 156 (438)
T PRK09952 98 MLTVWMMGIATALIGLLP-------------SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK-------- 156 (438)
T ss_pred HHHHHHHHHHHHHHhcCC-------------cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC--------
Confidence 999999999999999987 544 588899999999999999999999999998
Q ss_pred CcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc--------cccchhHHHHHHHHHHH
Q 009413 148 DNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ--------DTFGWVLGFAIPTIAMV 198 (535)
Q Consensus 148 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~--------~~~gw~~~f~~~~~~~~ 198 (535)
++|+...+..+.+..+|..++..+..++. ..+|||+.|++.++..+
T Consensus 157 -----~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 157 -----NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 56888888888888888888876665543 25799999988766543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=211.93 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=125.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcC---CChhhHHHHHHHHH---HHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVK---MSNSSAAKTVNSWC---GFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~---~s~~~~~~~~~~~~---~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
+..+++.+.+.. .++..+++.++++ .+..+.+.+.+.+. ++..++++++|+++||+ ||||++..+.++++++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 445566666544 5667788888874 55555545444444 44448999999999995 9999999999999999
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
.+++++++....... . ++..+++.|+++|++.|+..|...++++|++|+ ++|+++.+..+.+
T Consensus 107 ~~~~~~~~~~~~~~~---~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------------~~rg~~~~~~~~~ 168 (432)
T PRK10406 107 SLVIACLPGYETIGT---W--APALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------------GRKGFYASFQYVT 168 (432)
T ss_pred HHHHhhcCCchhHHH---H--HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------------CcccHHHHHHHHH
Confidence 999988762100000 0 234688999999999999999999999999998 6789999988888
Q ss_pred hhhhhhhhhhhhhhhc--------cccchhHHHHHHHHHHHH
Q 009413 166 VCSGSLLGVTVMSYIQ--------DTFGWVLGFAIPTIAMVT 199 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~--------~~~gw~~~f~~~~~~~~~ 199 (535)
.+.|..+++.+...+. ..+|||++|++.++..++
T Consensus 169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 8888888877655443 257999999987665443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=218.39 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=127.5
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHh-----hccccccccc
Q 009413 27 NLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTS-----TAFSWAWSTT 101 (535)
Q Consensus 27 ~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 101 (535)
...+.+.+++|+|..+.|++.+.+.+++.++++++|+++||+ |||+++..++++.+++....+. ++
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 120 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGSGSV-------- 120 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 345667789999999999999999999999999999999995 9999998888877776655554 33
Q ss_pred CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc
Q 009413 102 NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~ 181 (535)
+.+.+++.|+++|++.+...|...++++|++|+ ++|+++.+++..+.++|..+++.+..++.
T Consensus 121 -----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 121 -----SLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-------------RKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred -----hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-------------cceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 889999999999999999999999999999998 67899999999999999999998887765
Q ss_pred ccc---chhHHHHHHHHHHHHHHHHHHh
Q 009413 182 DTF---GWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 182 ~~~---gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+.. +|+..|.+.++..++..+..++
T Consensus 183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 183 NYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 543 5888888766655444333333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=209.22 Aligned_cols=172 Identities=8% Similarity=-0.011 Sum_probs=143.6
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
|+|..+.+.+..++.......+-..++. +.+++|+|.++.+++.+.+.++..++++++|+++|| +|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 5566777767777776665555555544 567899999999999999999999999999999999 59999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.+++.+++ +++.+++.|+++|++.|...+...+++.|.+|+ ++|+++.+..
T Consensus 83 ~i~~~l~~~~~-------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------------~~r~~~~~~~ 136 (394)
T PRK03699 83 ILAVAGLMFSH-------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------------KQRGSRLLFT 136 (394)
T ss_pred HHHHHHHHHcc-------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------------chHHHHHHHH
Confidence 99988888876 888999999999999999889899999999987 5688888888
Q ss_pred hhHhhhhhhhhhhhhhhhc-cccchhHHHHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQ-DTFGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~-~~~gw~~~f~~~~~~~~~~~~ 202 (535)
+....+|..++|.+.+++. +..|||+.|.+.++..++..+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 8888899999998888765 457999999876665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=210.31 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=152.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|.++.+.+..+......+...+.+|. +.+++|.|.++.++..+.+.+++.+++++.|+++||+ |||+++..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence 567788888888888887777776655 5568999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++.+++ +++.+++.|++.|++.+...+....++.|.+|+ ++|+++.+...
T Consensus 80 ~~~~l~~~~~-------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 133 (382)
T PRK10091 80 IGNAMFTLSS-------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------------GKVTAAVAGMV 133 (382)
T ss_pred HHHHHHHHhC-------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------------HHhhHHHHHHH
Confidence 9999999887 999999999999999998888888889998887 56889999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
.+..+|..++|.+++++.+..+||+.|++.++..++..+..+.
T Consensus 134 ~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 134 SGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998899999999877765554443333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=212.98 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=125.1
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
+...+|+.++ |+|..+.+++.+.+.++..++++++|+++||+ |||++++.+.++.+++.+.+++......
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~~-------- 118 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------- 118 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcccc--------
Confidence 3455678877 99999999999999999999999999999995 9999999999999888887776531110
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhh-hhhhhhhhhcccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSL-LGVTVMSYIQDTF 184 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-i~~~~~~~l~~~~ 184 (535)
+.+.+++.|++.|++.|...|.....+.|++|+ ++|+++.++++.+.++|.. .+|.++..+....
T Consensus 119 -~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 119 -SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------------KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred -cHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 667888999999999999889888889999988 6799999999999999864 4555433333345
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 009413 185 GWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+||+.|++.++..++..++.++
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999877655554333333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=206.96 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=149.5
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
++|.++.+.+..+....+.....+.+| ++.+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 445555566666666666655555554 45678999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.+.+...+ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.+..
T Consensus 81 ~~~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 134 (385)
T TIGR00710 81 ALSSLGLALSN-------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------------EELSRIYSIL 134 (385)
T ss_pred HHHHHHHHHHc-------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------------HHHHHHHHHH
Confidence 99988888877 888999999999999999999999999999998 6789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+...++|..++|.+++++.++.+|++.|++..+..++..+..+.
T Consensus 135 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 135 MPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999998877665555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=218.78 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=128.6
Q ss_pred HHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccch
Q 009413 29 VTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSS 108 (535)
Q Consensus 29 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (535)
.+.+.+++|.|.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++..++.++++++. +.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~-------------~~ 107 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS-------------NV 107 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh-------------hH
Confidence 345567999999999999999999999999999999999 5999999999999999888888876 77
Q ss_pred HHHHH-HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchh
Q 009413 109 AFLFW-SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWV 187 (535)
Q Consensus 109 ~~~~~-~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~ 187 (535)
+.+++ .|++.|++.+...+...+++.+++|+ +|+++.++.+.+.++|..++|.+++++.+.+|||
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr 173 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFYR--------------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR 173 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh--------------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence 77754 46889999988767777888888854 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 009413 188 LGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~~ 207 (535)
+.|++.++..++..+..++.
T Consensus 174 ~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 174 GSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999887666554444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=218.70 Aligned_cols=401 Identities=13% Similarity=0.084 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.+..+++..++..+....+ ....+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 3444555555555554444 4445566678999999999999999999999999999999995 9999999999999999
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
.+++..++ +.+.++++|+++|++.+...+...+++.|.+|+ ++|+++.++++.+
T Consensus 81 ~~~~~~~~-------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~~~~~~ 134 (485)
T TIGR00711 81 SLLCGVAP-------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------------EKRGRAMAIWGLT 134 (485)
T ss_pred HHHHhCcC-------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------------HHHHHHHHHHHHH
Confidence 99998887 899999999999999999999999999999998 6799999999999
Q ss_pred hhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHH-----HHHHHHhccc
Q 009413 166 VCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQ-----AIKAAASKLK 240 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 240 (535)
..+|..++|.+++++.++.+||+.|++..+..++..++.+...++.++++.+ + .+....... .+........
T Consensus 135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~d~~g~~l~~~~~~~~~~~~~~~~ 211 (485)
T TIGR00711 135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASE-N--FDFLGLLLLSVGLGSLLYGLSEGP 211 (485)
T ss_pred HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccC-C--CcHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999987766655544444433321111111 1 001110000 0000000000
Q ss_pred ccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceee
Q 009413 241 NSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFT 320 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (535)
. ...... ................+. .....++++..+.+..++++.....+........++......+.+
T Consensus 212 ~----~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 281 (485)
T TIGR00711 212 E----RGWFDS--NEILILSITGLVAIIAFV--VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLY-- 281 (485)
T ss_pred C----CCCCCc--hHHHHHHHHHHHHHHHHH--HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0 000000 000000000000000000 000000000001111111111111111111111111111111111
Q ss_pred eecccccccCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009413 321 KQGMTMKRNIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVET 399 (535)
Q Consensus 321 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 399 (535)
.....+ ++ ...+.......++.++..++.+++.++. ++.+.+.++..+..++..++....
T Consensus 282 -----~~~~~g--~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~g~~~~~~~~~~~~~~~- 342 (485)
T TIGR00711 282 -----LQQVLG--YTALQAGLHILPVGLAPMLSSPIAGRMGDKI-----------DPRKLVTIGLILYAVGFYWRAFTF- 342 (485)
T ss_pred -----HHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHHhccC-
Confidence 111100 11 1122333334455555566655543322 223455667777766665554210
Q ss_pred HHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 400 KRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
....+.+......++.|++.+...+.......+..|++.|++++|+.++.+.+|+.+|+.+.+.+.+
T Consensus 343 -----------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 -----------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0023445566668888999988887777888889999999999999999999999999999887765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=208.57 Aligned_cols=157 Identities=10% Similarity=0.030 Sum_probs=140.8
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
++|.++.+++..++..++...+.+.+|.|++ ++|.|..++|++.+.+.++..+++++.|+++||+ |||+++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~ 81 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence 4678899999999999998888899988887 6899999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++...+.+++ +++.++++|+++|++.+...|...+.+.+..++ ++|+++++.+
T Consensus 82 ~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 135 (381)
T PRK03633 82 AAGCAGLGLMV-------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------------RNRGRLLAAY 135 (381)
T ss_pred HHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------HHHHHHHHHH
Confidence 99988888877 889999999999999999888888888888777 5689999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchh
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWV 187 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~ 187 (535)
+.+.++|..+||.+++.+.+...|.
T Consensus 136 ~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 136 MMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHHhcccccccch
Confidence 9999999999999999887654333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=209.73 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|+++.++...++..++...+...++.. .+++|.+..+.+++.+.+.+.+.++.+++|+++||+ ||||+++.+.+++.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~ 79 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKL 79 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHH
Confidence 5677888888888888666555555554 568999999999999999999999999999999995 99999999999998
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+.+.+.. +. ++.|+++|++.+...|...+++.|.+|+ ++|+++.++.+
T Consensus 80 ~~~~~~~~~~-------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------------~~~~~a~~~~~ 130 (393)
T PRK11195 80 LGCLLMLFGI-------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPG-------------EKLVKANGWME 130 (393)
T ss_pred HHHHHHHHHH-------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH-------------HHHHHHHHHHH
Confidence 8887776654 43 6889999999999999999999999998 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
...++|..+||.++|++.+. .|+..+.+.....+++
T Consensus 131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999875 4776666655444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=210.01 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=146.5
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
+||.+..+.+..+.+.+..+.+.... +.+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 87 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLF 87 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 45666677777777777766665555 466788999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.+++.+++ +++.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.
T Consensus 88 ~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~ 141 (405)
T TIGR00891 88 SAGTLACGFAP-------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------------HLRNKASGLL 141 (405)
T ss_pred HHHHHHHHHhc-------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------------hhhhHHHHHH
Confidence 99988888877 889999999999999999999999999999998 6789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc--hhHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG--WVLGFAIPTIAMVT 199 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g--w~~~f~~~~~~~~~ 199 (535)
+.+.++|..+++.+++.+.+..+ |++.|.+..+..++
T Consensus 142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 99999999999999998877666 99999876554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=215.16 Aligned_cols=388 Identities=12% Similarity=0.037 Sum_probs=229.1
Q ss_pred HHhhhhcCCC---hhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCcccc
Q 009413 30 TYLTDVVKMS---NSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISS 106 (535)
Q Consensus 30 ~yl~~~l~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (535)
+.+.+++|++ ..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.++.++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 4567789999 89999999999999999999999999995 999999999999999998888887
Q ss_pred chHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccch
Q 009413 107 SSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 107 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw 186 (535)
+++.+++.|++.|++.++..+...+++.|.+|+ ++|+.+.+....+..+|.+++|.++..+.+ |
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---w 242 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---W 242 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---H
Confidence 999999999999999999999999999999998 678999999988999999999888765543 9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhcccccccc
Q 009413 187 VLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCG 266 (535)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (535)
|+.|++.++..++..+..++..+..+....+++ .++..+......+........ +... .+ ...
T Consensus 243 r~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-----~~~a~~~l~~~~~~~~~~~~~--------~~~~-~~-~~~-- 305 (505)
T TIGR00898 243 RWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-----IEEALKILQRIAKINGKKLPA--------EVLS-LS-LEK-- 305 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-----HHHHHHHHHHHHHHcCCCCCH--------HHHh-hh-hhh--
Confidence 999988777665554444333221111111111 122222222222211100000 0000 00 000
Q ss_pred ccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccch
Q 009413 267 NKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAI 345 (535)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (535)
....+++...+.+. .++ ++.... +..+.........+....... . . ...+......+.
T Consensus 306 -------~~~~~~~~~~~~~l-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~----~~~~~~~~~~~~ 364 (505)
T TIGR00898 306 -------DLSSSKKQYSFLDL-FRT-PNLRKTTLCLMMLWFTTAFSYYGLVLDL-------G-N----LGGNIYLDLFIS 364 (505)
T ss_pred -------hhhhccCCCcHHHH-hCC-hHHHHHHHHHHHHHHHHHHHHHHHhccc-------c-c----cCCChHHHHHHH
Confidence 00000000000000 011 111111 111111111111111000000 0 1 111111111222
Q ss_pred hHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHH
Q 009413 346 TVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYIL 425 (535)
Q Consensus 346 ~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 425 (535)
.+..+.+..+..++. +|.++ ++.+.++.++.+++++.+.... ....++.+...++
T Consensus 365 ~~~~i~~~~~~~~l~----dr~gr-------r~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~~~~~ 419 (505)
T TIGR00898 365 GLVELPAKLITLLLI----DRLGR-------RYTMAASLLLAGVALLLLLFVP--------------VDLYFLRTALAVL 419 (505)
T ss_pred HHHHHHHHHHHHHHH----HHhCC-------HHHHHHHHHHHHHHHHHHHHcC--------------CCchHHHHHHHHH
Confidence 222233333333333 33222 2455666667676665554421 1122344445555
Q ss_pred HHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHH
Q 009413 426 LGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLA 505 (535)
Q Consensus 426 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (535)
.+++.....+..+.+..|.+|++.|++++|+.+....+|+.++|.+.+ ..+ .+....+++++
T Consensus 420 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~ 481 (505)
T TIGR00898 420 GKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFG 481 (505)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHH
Confidence 666667777888899999999999999999999999999999999888 333 22234556666
Q ss_pred HHHHHHHHHHHHhhcccccccccc
Q 009413 506 LASALSLLLYVMLCKFFKSRTDNL 529 (535)
Q Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~ 529 (535)
++.+++.++.+ +.+|+++++.+|
T Consensus 482 ~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 482 GLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHHH-cCcCCCCCCCCC
Confidence 66666655544 446777766554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=213.29 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=124.2
Q ss_pred CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHH
Q 009413 38 MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCL 117 (535)
Q Consensus 38 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (535)
.+..+.+++.+.+.++..+++++.|+++||+ |||++++.+.+++.++.+++....... +.+.++++|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r~l 136 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFAL----------SVEMLIVGRVL 136 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcccc----------chHHHHHHHHH
Confidence 3389999999999999999999999999995 999999999999999988886654221 55689999999
Q ss_pred HHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhh---hhhccccchhHHHHHHH
Q 009413 118 ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM---SYIQDTFGWVLGFAIPT 194 (535)
Q Consensus 118 ~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~---~~l~~~~gw~~~f~~~~ 194 (535)
+|+|.+...+...++++|.+|+ ++|+++.++++.+.++|..+++.++ ....+..+||+.|++..
T Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 203 (481)
T TIGR00879 137 LGIGVGIASALVPMYLSEIAPK-------------ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203 (481)
T ss_pred HHhhhhHHHhHHHHHHHccCCh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 9999999999999999999998 6789999999999999999999998 66667789999999866
Q ss_pred HHHHHHHHHHHh
Q 009413 195 IAMVTSTAFFSF 206 (535)
Q Consensus 195 ~~~~~~~~~~~~ 206 (535)
+..++..+..++
T Consensus 204 ~~~~~~~~~~~~ 215 (481)
T TIGR00879 204 IPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHhc
Confidence 655554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-22 Score=201.41 Aligned_cols=346 Identities=19% Similarity=0.213 Sum_probs=251.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 87 (535)
+.+.+..++..+.++...+..+.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 34566777888888888788887775 6799999999999999999999999999999995 999999999999999998
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
.....+ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++..++.+...+
T Consensus 80 ~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 133 (352)
T cd06174 80 LLAFAS-------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------------KERGRALGLFSAGFG 133 (352)
T ss_pred HHHHhc-------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------------cchhhhhhHHHHHHH
Confidence 888876 889999999999999999999999999999998 678999999999999
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccC
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLP 247 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+|..++|.+++.+.+..+|++.+++..+..++..+...... + ...
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~--------------------- 178 (352)
T cd06174 134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL----------R----LLL--------------------- 178 (352)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------H----HHH---------------------
Confidence 99999999999999988999999887776665544433322 1 000
Q ss_pred CCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH-HHHHHHHHHhcCCCceeeeecccc
Q 009413 248 IDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW-TMLLMFAVIFQQPATFFTKQGMTM 326 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
...... .............+.. .
T Consensus 179 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~------ 202 (352)
T cd06174 179 -------------------------------------------------LLALAFFLLSFGYYGLLTYLPLY-L------ 202 (352)
T ss_pred -------------------------------------------------HHHHHHHHHHhHHHHHHHHHHHH-H------
Confidence 000000 0001111111111111 0
Q ss_pred cccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009413 327 KRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQ-RMGIGMFLSIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 405 (535)
+...+. .....+.+.....+...+..++.+++.+ |.++| + .+..+..+..++.......
T Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~i~~~~~~~~-------- 262 (352)
T cd06174 203 QEVLGL-SAAEAGLLLSLFGLGGILGALLGGLLSD----RLGRR-------RLLLLIGLLLAALGLLLLALA-------- 262 (352)
T ss_pred HHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhh-------hHHHHHHHHHHHHHHHHHHHh--------
Confidence 000000 0111233344445555566666655443 33222 3 4666777777776666542
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGR 485 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~ 485 (535)
.+.+...+..++.+++.+...+...++..|..|++.|++.+|+.+..+.++..+++.+.+.+.+.
T Consensus 263 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~------- 327 (352)
T cd06174 263 --------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT------- 327 (352)
T ss_pred --------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 23566778888999999999999999999999999999999999999999999999999998751
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHHH
Q 009413 486 SWFSDDMKEARLDLYYWVLALASALSLLLYV 516 (535)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 516 (535)
.++...+++.+++.+++.+..+
T Consensus 328 ---------~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 328 ---------GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred ---------cCcchHHHHHHHHHHHHHHHhe
Confidence 2234566666666666655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=216.78 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=129.4
Q ss_pred hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHH
Q 009413 35 VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWS 114 (535)
Q Consensus 35 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (535)
++++|..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++.+++.+++.++... +...+++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAGG-----------GIALVVFC 137 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHHc-----------CchHHHHH
Confidence 6899999999999999999999999999999995 99999999999888887776544311 56789999
Q ss_pred HHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcccc-chhHHHHHH
Q 009413 115 LCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF-GWVLGFAIP 193 (535)
Q Consensus 115 ~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~-gw~~~f~~~ 193 (535)
|+++|++.+...|....+++|++|+ ++|+++.++.+.+.++|..++|.+++++.+.. ||++.|++.
T Consensus 138 r~~~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 138 RVIQGLAQGSVSPATHKIIVKWAPP-------------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred HHHHHHhcccchhhHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 9999999999999999999999998 67999999999999999999999999998884 999999988
Q ss_pred HHHHHHHHHHHHhcc
Q 009413 194 TIAMVTSTAFFSFGS 208 (535)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (535)
++..++..++.+...
T Consensus 205 ~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 205 GIVGCAWSLLWFVFP 219 (465)
T ss_pred hHHHHHHHHHHHHHh
Confidence 776655544444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=206.13 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=139.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
.....+...+.+. ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++.
T Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~ 99 (398)
T TIGR00895 22 SFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLC 99 (398)
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 334455666778999999999999999999999999999999995 99999999999988888888
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.+.+.++|
T Consensus 100 ~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 100 ALAT-------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------------RFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHcc-------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------------HhhchhHhhHhhHHHHH
Confidence 8776 888899999999999999999999999999987 67899999999999999
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 009413 170 SLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
..+++.+++++.+..||+..|++.++..++..++
T Consensus 154 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred HHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 9999999999999899999998875444443333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=202.24 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhcccchHHHH-HHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCG-FTSMLPLVLAPLADSYWDRYSTIL-AFSFI 81 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~-~~~~~ 81 (535)
+.+.+...+..++.+++...+.+.++.|+++++|.|.++.|++.+...+ +..+.++++|+ +||+ ||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence 4566778888999999999999999999999999999999999877655 55555655666 9995 9998754 45555
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
.+++..+.++++ +++.+++.+.+.+...+...|...++..|..++ ++ ++.+...++
T Consensus 92 ~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~ 147 (393)
T PRK15011 92 GVLACTLFAWNR-------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADK-------TG----REAVMFSSF 147 (393)
T ss_pred HHHHHHHHHHhh-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh-------cc----chHHHHHHH
Confidence 556666666665 677665555444433446677777877776554 11 112445578
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
.+.+.++|..++|.+++++.+++|||..|++.++..++..+..+.
T Consensus 148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999998877665554444333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=200.13 Aligned_cols=408 Identities=13% Similarity=0.030 Sum_probs=263.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHH---HHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASN---LVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSF 80 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~ 80 (535)
+|-.+.+.+..++.-.+||-+--+ ..+++.++.++|.+|.|++.+.+.+.+.++..+.|.++||. +.|+.+-.+++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLi 102 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHH
Confidence 455577888888888888888744 45888999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 81 IYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+.++..++..+++ +.+.+.+.-.+.|..+|.-.|.....++.++|+ ++||+..+
T Consensus 103 lsai~nil~Gfs~-------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------------~eRG~~~s 156 (448)
T COG2271 103 LSAIVNILFGFSP-------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------------KERGTWWS 156 (448)
T ss_pred HHHHHHHHHhhhh-------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------------cccCceEE
Confidence 9999999999998 889999999999999999999999999999998 78999999
Q ss_pred hhhhHhhhhhhhhhhhh--hhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhc
Q 009413 161 WWYFGVCSGSLLGVTVM--SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASK 238 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~--~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (535)
+++.+-|+|+.+.|++. +++..+.+||..|+.+++..++..+..+...+..|++..- |..+. .++
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL------P~ie~-------~~~ 223 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL------PPIEE-------YRG 223 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC------CCHHH-------hhc
Confidence 99999999999999999 8888888999999999887665444433333332332211 11100 000
Q ss_pred ccccccccCCCCCCccc-hhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCC
Q 009413 239 LKNSKIVLPIDNSDTVE-LELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPA 316 (535)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~ 316 (535)
...+.- ++++.++ .+.+++.. +++...|.++.+ +.-.+..++-+.+..+.+
T Consensus 224 d~~e~~----~~~~~~~~ls~~~i~~-----------------------~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p 276 (448)
T COG2271 224 DPLEIY----EEEKENEGLTAWQIFV-----------------------KYVLKNKLIWLLALANVFVYVVRYGINDWGP 276 (448)
T ss_pred Cchhhh----hhhccCCCccHHHHHH-----------------------HHHHcChHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 000000 0000000 11111000 001222333322 333445555555555655
Q ss_pred ceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 009413 317 TFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAI 396 (535)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 396 (535)
.++.+. .+.+.. ...+..+..-.+.+.+..+.+++.|++.+.. +.+. -.+.++...++.+.+..
T Consensus 277 ~YL~e~-k~~s~~-------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~--~~i~~~~i~~~~~~~w~ 340 (448)
T COG2271 277 LYLSEV-KGFSLV-------KANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPM--ALIFMLLITASLVLYWL 340 (448)
T ss_pred HHHHHh-cCCCHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchH--HHHHHHHHHHHHHHHHc
Confidence 554431 222211 1222333344566666677778777765431 1111 12222222332222222
Q ss_pred HHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 009413 397 VETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLSALLITVI 475 (535)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~lg~~~~~~i 475 (535)
.+ ..+.+...+.++..|+..-.-.-..-..+.|..|++..|++.|+...+..+ |+.++....+++
T Consensus 341 ~~--------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i 406 (448)
T COG2271 341 AP--------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYI 406 (448)
T ss_pred CC--------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceee
Confidence 10 124455555555555544433333445678999999999999999888877 777777777777
Q ss_pred HhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 476 EALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
.|. -|| ...|.++.+.++++.++.....+..++
T Consensus 407 ~d~------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 407 ADT------WGW----------DGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred Eec------CCC----------cchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 662 244 446666667777776665555443333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=202.94 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=138.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|..+.+....++..+......+.+| ++.+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 85 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence 4444455555555555544444444 45578999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+.+...+ +.+.+++.|++.|++.+...+....+..|.+++ ++|+++.+..+.
T Consensus 86 ~~~~~~~~~-------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 139 (394)
T PRK11652 86 GTLVALFAH-------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------------TQLRHANSLLNM 139 (394)
T ss_pred HHHHHHHHc-------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------------HHHHHHHHHHHH
Confidence 888888776 888999999999999888777778888888776 568889999999
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
+..++..++|.+++++.+..||++.|++..+..++.
T Consensus 140 ~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 140 GILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 999999999999999988889999998876654443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=200.04 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=142.1
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
|.||++....+..++...+.+....++++++ +++|.|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 6789999999999999999888888899988 57899999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHhhcc-cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 82 YVVGLVALTSTAF-SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
..++.+++..... .+ +++.+++.|++.|+|.+...+...+.+.+.+|+ ++|+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~----------~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------------~~~g~~~g 144 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHA----------NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------------DNLSSAVG 144 (402)
T ss_pred HHHHHHHHHHHhccCc----------cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------------HHHHHHHH
Confidence 8888765532111 01 677888999999999888777778888898887 67899999
Q ss_pred hhhhHhhhhh-hhhhhhhhhhccccchhHHHHHHHH
Q 009413 161 WWYFGVCSGS-LLGVTVMSYIQDTFGWVLGFAIPTI 195 (535)
Q Consensus 161 ~~~~~~~lg~-~i~~~~~~~l~~~~gw~~~f~~~~~ 195 (535)
..+.+.++|. .++|.+++++.+..||+..++....
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999996 5899998898888887655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=205.88 Aligned_cols=394 Identities=11% Similarity=0.013 Sum_probs=224.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+++++.+....++..+++..+.++++.|+++++|+|..+.|++.+.+.+...+++++.|+++|| +||||+++.+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHH
Confidence 4678888888888888888899999999999999999999999999999999999999999999 599999988766655
Q ss_pred HHHHHHHhhcccccccccCccccchH-HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSA-FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
++..........+ ... ....+.++.++..+...+.....+.++.++ .. ++++..++..
T Consensus 88 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~g~~~g~~ 146 (420)
T PRK09528 88 VLFGPFFIYVFAP----------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-------VS----RRSGFEYGRA 146 (420)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-------HH----hhccccchhh
Confidence 4433222110000 000 111222222332232222222233333221 11 2356677777
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNS 242 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
+...++|..++|.+++++.+ .+|+..|++..+..++.+++.+..+++.+++ ++.++ ... .+++
T Consensus 147 ~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~----------~~~~-- 209 (420)
T PRK09528 147 RMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVAN---ALG----------ANAS-- 209 (420)
T ss_pred HHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhcc---chh----------cccc--
Confidence 78889999999999998876 4899999887766655554444433321111 00000 000 0000
Q ss_pred ccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH-HHHHHHHHHhcCCCceeee
Q 009413 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW-TMLLMFAVIFQQPATFFTK 321 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 321 (535)
.. ...+..+ . .++ +..+...... .....+.....+.+.++..
T Consensus 210 -------~~--~~~~~~~---~------------------------l~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 252 (420)
T PRK09528 210 -------AV--SLKDALA---L------------------------LKL-PKFWFLVLYVIGVACFYDVFDQQFPNFFAS 252 (420)
T ss_pred -------cc--cHHHHHH---H------------------------ccC-CCeEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 0 011 1111111111 1111111111222222111
Q ss_pred ecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 322 QGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKR 401 (535)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 401 (535)
+ ..+.... ....+.+..+..+...+..++.+++.+++.+ .+.+..+.++.+++..+..+.
T Consensus 253 ~--~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~~~~~~~l~~~~~~l~~~~---- 312 (420)
T PRK09528 253 F--FATPEQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGA-----------KNALLLAGTIMAVRIIGSGFA---- 312 (420)
T ss_pred H--HhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHhc----
Confidence 1 0000100 0011233333444444555555554433322 244566666666666555442
Q ss_pred hhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Q 009413 402 LEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFAL-YTSVFGVGSFLSALLITVIEALSS 480 (535)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~~~~~i~~~~~ 480 (535)
.+.+.++...++.+++.....+...+++.+..|++.|++..+. +++..++|+.+++.+.|++.|.
T Consensus 313 ------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-- 378 (420)
T PRK09528 313 ------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-- 378 (420)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh--
Confidence 2445566667778888877777778899999999999988766 5677889999999999999872
Q ss_pred CCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009413 481 SRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKF 521 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (535)
.++...|...+++.++..++.++..++
T Consensus 379 --------------~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 379 --------------IGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred --------------hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 124556766677766666555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-21 Score=200.01 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=131.3
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHH
Q 009413 32 LTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFL 111 (535)
Q Consensus 32 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (535)
+.+++|.|..+.++..+.+.++..+++++.|+++||+ |||++++.+.+++.++.+++..++ +.+.+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-------------~~~~l 107 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT-------------SMTQF 107 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-------------CHHHH
Confidence 5678999999999999999999999999999999995 999999999999999999998887 89999
Q ss_pred HHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHH
Q 009413 112 FWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFA 191 (535)
Q Consensus 112 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~ 191 (535)
+++|+++|++.+...+...+++.|.+|+ ++|++..++.+.+.++|..+||.+++.+.++.|||+.|+
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~ 174 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQ-------------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA 174 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999887667777888999887 678899999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHh
Q 009413 192 IPTIAMVTSTAFFSF 206 (535)
Q Consensus 192 ~~~~~~~~~~~~~~~ 206 (535)
+.++..+++.+..+.
T Consensus 175 ~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 175 IIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766655544333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=208.60 Aligned_cols=174 Identities=10% Similarity=0.043 Sum_probs=134.9
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|.+.......++..+..+.+.+.+ +++.+++|+|..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 3445555555556666555554443 466779999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.++++++. +.+.+++.|++.|++.+... ....+++|++|+ ++|+++.++.+
T Consensus 113 ~~~~~~~~~~-------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------------~~rg~a~g~~~ 165 (476)
T PLN00028 113 PAVFCMSLVS-------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------------KIVGTANGIAA 165 (476)
T ss_pred HHHHHHHHhc-------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------------hheeHHHHHHH
Confidence 9888888877 88888899999999887654 455678999998 67899999988
Q ss_pred hHhhhhhhhhhhhhhhhc----c-----ccchhHHHHHHHHHHHHHHHHHHh
Q 009413 164 FGVCSGSLLGVTVMSYIQ----D-----TFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~----~-----~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
...++|..+++.+.+.+. + ..|||+.|++.++..++..+..++
T Consensus 166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777888877766665432 1 258999999877766554444333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=195.96 Aligned_cols=362 Identities=11% Similarity=0.018 Sum_probs=227.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHH----HHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTI----LAFSF 80 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~----~~~~~ 80 (535)
|..+.+....++...++-...+++|.|++ ++|+|..++|++.+.+.+...+++++.|+++||+ ||++.. ..+..
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 81 (382)
T TIGR00902 4 QPFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASA 81 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 34444556666666666667788999996 6899999999999999999999999999999995 985433 22222
Q ss_pred HHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 81 IYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
++.+ ..+..++ +++.+++.|.+++.+.+...|...++..+. + ++|++.++
T Consensus 82 l~~~--~~~~~~~-------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------------~~~~~~~g 131 (382)
T TIGR00902 82 IFAA--AFSAGAH-------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------------KQFGLDYG 131 (382)
T ss_pred HHHH--HHHHhhh-------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------------HHcCCCcc
Confidence 2211 2233344 788899999999998888888888876553 2 35788899
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccc
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLK 240 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
......++|.+++|.+++++.+++|||..|.+.....++.. +.+...++. ++++++ +.. +.
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~---~~~------------~~ 192 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAI---PED------------ES 192 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccc---ccc------------cc
Confidence 99999999999999999999999999999887654433222 222222211 111110 000 00
Q ss_pred ccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHh-HHHHHHHHHHHhcCCCcee
Q 009413 241 NSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFP-IWTMLLMFAVIFQQPATFF 319 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 319 (535)
. +...+.+ ....|+.+..+. ..+........+. +.
T Consensus 193 ----------~--~~~~~~~----------------------------~l~~~~~~~~l~~~~l~~~~~~~~~~----~~ 228 (382)
T TIGR00902 193 ----------Q--GDSAFIA----------------------------LLKNPMNLRFLAAVCLIQGAHAAYYG----FS 228 (382)
T ss_pred ----------c--cchhHHH----------------------------HHcChHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 0 0000000 111122222221 1222222222222 11
Q ss_pred eeecccccccCCCccccCcc---ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 009413 320 TKQGMTMKRNIGSNFKIPPA---TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAI 396 (535)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 396 (535)
+.+ .+ +. +.+.. ....+..+..++...+.++ +.+| +++.+.+.++.++.++....+..
T Consensus 229 ~~~---l~-~~----g~s~~~~g~l~~~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 229 AIY---WQ-AA----GISASATGLLWGIGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHH---HH-HC----CCCHhHHHHHHHHHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11 11 12222 2222333333443334333 3333 44446677888888888776665
Q ss_pred HHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 009413 397 VETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLITVI 475 (535)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~~~~~i 475 (535)
. .+.+.+++..++.++..+...+....++.+. |++.|++++++++ ...++|..+++.++|++
T Consensus 290 ~----------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l 352 (382)
T TIGR00902 290 I----------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFI 352 (382)
T ss_pred H----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3556777788999999999999999999988 9999999999986 56889999999999999
Q ss_pred HhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q 009413 476 EALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLL 514 (535)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (535)
.|.. + ...|+..+++++++.++
T Consensus 353 ~~~~----------------g-~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 353 YPTL----------------G-AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHhc----------------c-HHHHHHHHHHHHHHHHH
Confidence 8722 1 24466666666665444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=196.58 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=129.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHH
Q 009413 32 LTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFL 111 (535)
Q Consensus 32 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (535)
+++++|.|.++.++..+.+.++..+++++.|+++||+ |||+++..+.++..++.+++.+.+ +.+.+
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------~~~~l 97 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE-------------SAAQL 97 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-------------CHHHH
Confidence 6678999999999999999999999999999999995 999999999999888888888877 88899
Q ss_pred HHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHH
Q 009413 112 FWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFA 191 (535)
Q Consensus 112 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~ 191 (535)
++.|+++|++.+...+...+++.|.+|+ +++.+..+......++|..++|.+++++.++.|||+.|+
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~ 164 (401)
T PRK11043 98 LVLRFVQAVGVCSAAVIWQALVIDRYPA-------------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA 164 (401)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 9999999999888778888899999887 567888888888889999999999999999899999998
Q ss_pred HHHHHHHHHHHHHH
Q 009413 192 IPTIAMVTSTAFFS 205 (535)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (535)
+..+..++..+..+
T Consensus 165 ~~~~~~~~~~~~~~ 178 (401)
T PRK11043 165 TLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 87766655544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=196.24 Aligned_cols=167 Identities=12% Similarity=0.074 Sum_probs=139.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
.....+....++....+.+| .+.+++|.|..+.++..+.+.++..+++++.|+++||+ |||++++.+.+++.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 34444445555545544444 45568999999999999999999999999999999995 99999999999999998888
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
..++ +.+.+++.|+++|++.+...+...+++.|.+|+ ++|+++.+..+...++|
T Consensus 86 ~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 86 SLAE-------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------------RRRAKVLSLLNGITCII 139 (392)
T ss_pred HHhC-------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------------HHHHHHHHHHHHHHHHH
Confidence 8776 888889999999999998888999999999988 67999999999999999
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 009413 170 SLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 204 (535)
..++|.+++++.+..+|++.|++..+..++..+..
T Consensus 140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999988776555544443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=204.27 Aligned_cols=158 Identities=12% Similarity=0.076 Sum_probs=128.6
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
....+++++ +|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+++...+....
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 116 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWATS-------- 116 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccccc--------
Confidence 344567775 599999999999999999999999999999995 9999999998888888777665431110
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc-ccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ-DTF 184 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~-~~~ 184 (535)
+...+++.|++.|++.|...+.....+.|.+|+ ++|+++.++++.+.++|..+++.+.+... .+.
T Consensus 117 -~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 117 -SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------------SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred -hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------------ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 567788899999999999999889999999998 67999999999999999999988776543 457
Q ss_pred chhHHHHHHHHHHHHHHHHHHhc
Q 009413 185 GWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
+||..|++.++..++..+..++.
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999998777665544433333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=197.29 Aligned_cols=356 Identities=17% Similarity=0.192 Sum_probs=218.3
Q ss_pred HHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchH-HHHHHHHHHHHHHHHH
Q 009413 14 AGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYS-TILAFSFIYVVGLVAL 89 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~~~ 89 (535)
.+..++.+..+..+++.|+++++|+|+.++|++.+...+...+..|+.|+++||. +|||| .++.+...++++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3445566667778899999999999999999999999999999999999999983 48755 5767777788777777
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
...+..+. . .....+++.+++.+++.+.......++..|..++ + ++|+++.++.+...++|
T Consensus 88 ~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~-----~~R~~~~~~~~~~~~~g 148 (437)
T TIGR00792 88 FTTPDFSA-----T--GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD-------P-----RERESLSTFRRFGATLG 148 (437)
T ss_pred HhCCCCCc-----c--hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC-------H-----HHHHHHHHHHHHHHHHH
Confidence 66542110 0 0345667778888888888777778888888755 1 56899999888888888
Q ss_pred hhhhhhhhhhhc-------cccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccc
Q 009413 170 SLLGVTVMSYIQ-------DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNS 242 (535)
Q Consensus 170 ~~i~~~~~~~l~-------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
..+++.+.+.+. +..+|++.+.+.++..++..+..+...++.+++++++++++.+..+. ++
T Consensus 149 ~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~--------- 216 (437)
T TIGR00792 149 GLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQI---FK--------- 216 (437)
T ss_pred HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHH---HH---------
Confidence 877766655543 24689998887776555544443333332111111110000000000 00
Q ss_pred ccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeee
Q 009413 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQ 322 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (535)
+ ..+.|.+...+...+..............++..+
T Consensus 217 -----------------~----------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T TIGR00792 217 -----------------A----------------------------LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTY 251 (437)
T ss_pred -----------------H----------------------------HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEee
Confidence 0 0111122222211221111111222222222221
Q ss_pred cccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 323 GMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRL 402 (535)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 402 (535)
..+ + ......+..+..+..++..++..++.+++. +.+.+..+.++..++++...+.
T Consensus 252 ~~~---~-----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g-----------~~~~~~~~~~~~~~~~~~~~~~----- 307 (437)
T TIGR00792 252 VLG---D-----PELFSYMGSIAIVAGLIGVLLFPRLVKKFG-----------RKILFAGGILLMVLGYLIFFFA----- 307 (437)
T ss_pred ecC---C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHc-----
Confidence 111 0 111122333344555555666655433332 2245566766666666555442
Q ss_pred hhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 403 EMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSALLITVI 475 (535)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~lg~~~~~~i 475 (535)
+.+.+...+..++.+++.+...+..+++..|..| ++.+|.+.|+.++...+|..+++.+.+.+
T Consensus 308 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 308 ----------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133455566677888888888888888887765 66789999999999999999999999998
Q ss_pred Hhhh
Q 009413 476 EALS 479 (535)
Q Consensus 476 ~~~~ 479 (535)
.+..
T Consensus 378 l~~~ 381 (437)
T TIGR00792 378 LGII 381 (437)
T ss_pred HHHc
Confidence 8754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=206.07 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|.+..+++..++..+.+..+. ...+++.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 96 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 4555666666666666665554 444667789999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++.+.. +++.+++.|++.|++.++..+...+++.|.+|+ ++|+++.+..+
T Consensus 97 ~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~ 150 (496)
T PRK03893 97 VGTLACGFAP-------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------------HLRNKASGFLI 150 (496)
T ss_pred HHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------------HHHHHHHHHHH
Confidence 9988888877 889999999999999999999999999999998 67899999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIA 196 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~ 196 (535)
.+.++|..++|.+.+++.++.+|++.|++..+.
T Consensus 151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999875443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=193.00 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=136.9
Q ss_pred hhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccccc
Q 009413 22 KGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTT 101 (535)
Q Consensus 22 ~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (535)
....+.++.+.+ ++|.|..+.++..+.+.++..+++++.|+++||+ |||+++..+.++..++...+.+.+
T Consensus 8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~-------- 77 (377)
T PRK11102 8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ-------- 77 (377)
T ss_pred HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc--------
Confidence 344466666665 7999999999999999999999999999999995 999999999999999998888877
Q ss_pred CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc
Q 009413 102 NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~ 181 (535)
+.+.+++.|+++|++.+...+...+++.|.+|+ ++|+++.++.+....+|..++|.+++++.
T Consensus 78 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 78 -----TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------------EEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999989999999999988 67899999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 009413 182 DTFGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 182 ~~~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
+..+|++.|++..+..++..+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 140 VWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHH
Confidence 989999999887766555444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=201.41 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=134.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
....+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+++.+++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 3345678889999999999999999999999999999999995 999999999999999999998887
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhh-hhhhhhcccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGV-TVMSYIQDTF 184 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~-~~~~~l~~~~ 184 (535)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.+.+.++|..++| .+++.+.+..
T Consensus 82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 147 (379)
T TIGR00881 82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------------SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY 147 (379)
T ss_pred -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------------hhheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999998 6789999999999999999999 5666777778
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 009413 185 GWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+|++.|++.++..++..+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 148 SWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred CchhHHHHHHHHHHHHHHHHhe
Confidence 9999998877655544444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-21 Score=197.73 Aligned_cols=388 Identities=12% Similarity=0.034 Sum_probs=226.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|.+|.+....++...++..+.++++.|+++++|.|..+.+++.+.+.+...+++++.|+++||+ |||+.++.+....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~ 79 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLL 79 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 36788888999999999999999999999999999999999999999999999999999999995 99999988766665
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++..........+... . ......++.+++.|++.+...|...++..|..++ ++..++...
T Consensus 80 ~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------------~~~~~g~~~ 139 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQ---S--NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------------SNFEYGKAR 139 (396)
T ss_pred HHHHHHHHHHhhhHHH---H--HHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------------cccccchhh
Confidence 4433221110000000 0 0233456678888888888888887776664222 234556666
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSK 243 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
...++|..++|.+++.+.+ .+|+..|++.+...++..++.+...++.+ +++ ...+ ..+.+.
T Consensus 140 ~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~-------~~~~~~--- 200 (396)
T TIGR00882 140 MFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAP----SSA----TVAN-------ALGANA--- 200 (396)
T ss_pred hhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCc----hhh----hhhc-------cccccc---
Confidence 7789999999999988765 59999998877665554444333222211 101 0000 000000
Q ss_pred cccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH-HHHHHHHHHhcCCCceeeee
Q 009413 244 IVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW-TMLLMFAVIFQQPATFFTKQ 322 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 322 (535)
+.. +..+..+ ..+++ .++..+... .....+.....+.+.++...
T Consensus 201 -----~~~--~~~~~~~---------------------------~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~ 245 (396)
T TIGR00882 201 -----SAF--SLKLALE---------------------------LFRQR-KFWMFVLYVVGVACVYDVFDQQFANFFTSF 245 (396)
T ss_pred -----CCC--CHHHHHH---------------------------HHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000000 01111 121221111 11111111111212211111
Q ss_pred cccccccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 323 GMTMKRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKR 401 (535)
Q Consensus 323 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 401 (535)
.. +.. .+. ..+.+.+...+...+.....++ +.+|.+ +.+.+.++.++.++.......
T Consensus 246 ~~--~~~----~~~~~~g~~~~~~~i~~~~~~~~~g~----l~~r~g-------~~~~l~~~~~l~~l~~~~~~~----- 303 (396)
T TIGR00882 246 FA--TPQ----QGTRVFGYVTTMGELLNALIMFCAPL----IINRIG-------AKNALLIAGTIMSVRIIGSSF----- 303 (396)
T ss_pred cc--ccc----cchHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------cchhHHHHHHHHHHHHHHHHh-----
Confidence 00 000 000 0112222223333333333333 333332 224456666666666654443
Q ss_pred hhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Q 009413 402 LEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFAL-YTSVFGVGSFLSALLITVIEALSS 480 (535)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~~~~~i~~~~~ 480 (535)
..+.+++.+..++.+++.........++..+..|++.++++.+. ++....+|+.+++.+.|++.+.
T Consensus 304 -----------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-- 370 (396)
T TIGR00882 304 -----------ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-- 370 (396)
T ss_pred -----------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh--
Confidence 22445556667778888777666677788888999999887776 5688999999999999999872
Q ss_pred CCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHH
Q 009413 481 SRNGRSWFSDDMKEARLDLYYWVLALASALSLLLY 515 (535)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 515 (535)
.+++..|.+.+++.++..+..
T Consensus 371 --------------~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 371 --------------IGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred --------------cccHHHHHHHHHHHHHHHHHH
Confidence 234566666666665555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=196.04 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHH-HHHHHH-----HhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTV-NSWCGF-----TSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~-~~~~~~-----~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
..+++..+++.+.... ..+..+.+.++++.+..+.+... +....+ ..+++++.|+++||+ ||||+++.+.++
T Consensus 18 ~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~ 95 (434)
T PRK15075 18 LRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHH
Confidence 3344455555555443 35556688889998887765443 322222 236788999999995 999999999999
Q ss_pred HHHHHHHHHhhcccccccccCccccchH--------HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCccccc
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSA--------FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSD 153 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 153 (535)
+.++.+++++++ +.. .++++|+++|++.|...+....+++|.+|+ +
T Consensus 96 ~~~~~~l~~~~~-------------~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-------------~ 149 (434)
T PRK15075 96 MASGTLLIAFVP-------------GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-------------G 149 (434)
T ss_pred HHHHHHHHHhCC-------------cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-------------c
Confidence 999999999887 544 468999999999999999999999999998 6
Q ss_pred chhhhhhhhhhHhhhhhhhhhhhhhhh--------ccccchhHHHHHHHH
Q 009413 154 KKSLFFKWWYFGVCSGSLLGVTVMSYI--------QDTFGWVLGFAIPTI 195 (535)
Q Consensus 154 ~r~~~~~~~~~~~~lg~~i~~~~~~~l--------~~~~gw~~~f~~~~~ 195 (535)
+|+++.++...+.++|..+++.+++.+ .+.+|||+.|++..+
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 789999998888888888777776655 246799999987543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-20 Score=191.53 Aligned_cols=404 Identities=14% Similarity=0.098 Sum_probs=231.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccc-hHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDR-YSTILAFSFIYVV 84 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~~~~~~~~~~~ 84 (535)
....+.+..++...++-...+++++|+++++|+|..+.|++.+.+.++..+++++.|+++||+ || |+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~ 81 (418)
T TIGR00889 3 TTAKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGAL 81 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Confidence 345567777888888777889999999999999999999999999999999999999999995 65 7788888877777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+..+.+ +++.+.+.|++.+++.+...+...++..+...+......+. ..|.+.++
T Consensus 82 ~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~-----~~~~r~~G---- 139 (418)
T TIGR00889 82 LLFFAAQVT-------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD-----FPPIRVMG---- 139 (418)
T ss_pred HHHHHHHhc-------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc-----CCCeeeeh----
Confidence 777777666 78888899999999877777766665443332100000001 12334443
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccccc
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKI 244 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
.+|.+++|.+++.+.....|. +|++.++..++..+.. +..++.++.+++++ ....+..+
T Consensus 140 --~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~---~~~~~~~~-------------- 198 (418)
T TIGR00889 140 --TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAK---MSIKVMLG-------------- 198 (418)
T ss_pred --hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccc---cCHHHHhh--------------
Confidence 478888888888774433454 3544444444333322 22222111100000 00000000
Q ss_pred ccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH-HHHHHHHHHHhcCCCceeeeec
Q 009413 245 VLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI-WTMLLMFAVIFQQPATFFTKQG 323 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
..+.+ . .+++ +.+.++.. ++........+...+.+...
T Consensus 199 -----------~~~~~---~------------------------~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 237 (418)
T TIGR00889 199 -----------LDAFI---L------------------------FKNK-RMAIFFFFSMLLGAPLQITNIFGNGFLHE-- 237 (418)
T ss_pred -----------hhHHH---H------------------------hcCC-CeeeHHHHHHHHHhHHHHHHHhHHHHHHH--
Confidence 00000 0 0111 11111111 11111111111111111100
Q ss_pred ccccccCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 324 MTMKRNIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRL 402 (535)
Q Consensus 324 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 402 (535)
.+.+.....++. ...+....+..+..++...+.+++ .+|+ ++++.+.++.++.++.+.++.....
T Consensus 238 ~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l----~dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~--- 303 (418)
T TIGR00889 238 FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFF----LKRF-------GIKKVMLLSLVAWALRFGFFAYGDP--- 303 (418)
T ss_pred hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHHHcCc---
Confidence 000000000000 011222233333334444444443 3332 2335667777777776655544210
Q ss_pred hhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcC
Q 009413 403 EMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLITVIEALSSS 481 (535)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~~~~~i~~~~~~ 481 (535)
.....+.+++..++.+++.+...+....++.|.+|++.|++++|+.+ ..+.+|+.+||.+.|++.+..+.
T Consensus 304 ---------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 304 ---------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 01123445667788899998888888899999999999999999997 67889999999999998874321
Q ss_pred CCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009413 482 RNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTD 527 (535)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 527 (535)
.+. .+++..|.+.+++.+++.++.+++.++.++.-+
T Consensus 375 ~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~ 410 (418)
T TIGR00889 375 YGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIK 410 (418)
T ss_pred ccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 110 124567777777877787777777776655433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=199.44 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=160.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
++.+.+++++...++..-|.+.. .-.-.++.+|.++++.|++.+.+.+.+.++.|+.|+++||| .||+++.+|..++.
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence 35567788888888888887765 33556778999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+++.++. .++++.+.|.+.|+|.+.+.|.++++++|.||+ ++|++.++++|
T Consensus 110 ~Av~~~~fs~-------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------------~~Rs~~~~ify 163 (493)
T KOG1330|consen 110 LAVFASGFSN-------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------------DKRSRVLGIFY 163 (493)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------------hhhhHHHHHhh
Confidence 9999999997 999999999999999999999999999999999 68999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGSQI 210 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~ 210 (535)
+++++|.++|.++++++.+..+ |||.|+..+++.++..++.++..+.
T Consensus 164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 9999999999999999988777 9999999888777766665555443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=185.84 Aligned_cols=382 Identities=15% Similarity=0.061 Sum_probs=255.8
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
++|+++ +....+...|.-+.+.+.+.+++.+++|+|++|.+++.....+...+.+++-|.+.|| ||.|++...+.++.
T Consensus 12 ~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLL 89 (417)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHH
Confidence 445555 5666677778888888999999999999999999999999999999999999999999 59999999999999
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.+-.+..+++...+ +.+.+++.+++.|++ |+.+++..++++++||+ ++++.+.+++
T Consensus 90 ~IP~~~~~~a~~~~----------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~-------------~~qG~AlGI~ 145 (417)
T COG2223 90 LIPCLGLAFAVTYP----------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPK-------------EKQGLALGIA 145 (417)
T ss_pred HHHHHHHHHHccCC----------chHHHHHHHHHHhcc-cceehcccccccccCCh-------------hhhhHHHHHh
Confidence 99988888887544 567999999999997 66678889999999999 5679999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc---hhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG---WVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKL 239 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
. ..|+|..+...++.++....| |+....+..+.+++..++.++..+..++.++..+ +... ..++.
T Consensus 146 g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~----~~~~--~~~~~----- 213 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK----PQLP--AQLKA----- 213 (417)
T ss_pred c-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc----ccch--hHHHH-----
Confidence 9 889999999999999998888 9998888888777777777777665554322222 1000 00000
Q ss_pred cccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhc-CCCce
Q 009413 240 KNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQ-QPATF 318 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~ 318 (535)
+..+++.+.+..+.......+..+. +.+.+
T Consensus 214 -------------------------------------------------v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~ 244 (417)
T COG2223 214 -------------------------------------------------VFSNKDTWLLSLLYFATFGGFVGFSAYLPMY 244 (417)
T ss_pred -------------------------------------------------HhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222334444333333333222222 11111
Q ss_pred eeeecccccccCCCccccCcc---ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 009413 319 FTKQGMTMKRNIGSNFKIPPA---TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAA 395 (535)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 395 (535)
+ ..+ |+.++. .+.....+...+.-|+.+++.|| .+..+.....+..+.+...++.
T Consensus 245 ~-------~~~----fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-----------~Gg~rv~~~~f~~~~~~~~~l~ 302 (417)
T COG2223 245 L-------VTQ----FGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-----------IGGRRVTLAVFVGMALAAALLS 302 (417)
T ss_pred H-------HHh----cCCChhhHHHHHHHHHHHHHHHHhccchhhhh-----------ccchhHHHHHHHHHHHHHHHHH
Confidence 1 111 222222 22333333444444555554443 4444556666666666665555
Q ss_pred HHHHHHhhhhccCCCCccchhHH----HHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009413 396 IVETKRLEMNQQYSETVPLSIFW----LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALL 471 (535)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~ 471 (535)
..... ..+..+.+. .+..+++.|+|.+.++ -.+...+|+ +.|.+.|+.....++|++.-|..
T Consensus 303 ~~~~~---------~~~~~~~~~~~~~~l~l~~~~G~GnGsvf----k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~ 368 (417)
T COG2223 303 LFLTG---------FGHGGSFVVFVAVFLALFVFAGLGNGSVF----KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLA 368 (417)
T ss_pred ccccc---------cccCcchHHHHHHHHHHHHHhccCcchhe----eechHHHHh-hhhHHHHHHHHhccccccchhHH
Confidence 43110 000122223 3344444555554433 444445654 58889999999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 009413 472 ITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFF 522 (535)
Q Consensus 472 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 522 (535)
.+...+.+ +.+...|+.+....+++.+..+....+.
T Consensus 369 ~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 369 FGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888754 3355677788888888887776665443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-19 Score=188.39 Aligned_cols=382 Identities=11% Similarity=0.091 Sum_probs=232.2
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-----cchHH-HH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-----DRYST-IL 76 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~~-~~ 76 (535)
++|+.+.++++.+......+.....++.|++ +.|.|.++++.. +..... .++.++.|+++|| + ||||. +.
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll 85 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLL 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHH
Confidence 3556667788888888888888888889887 569999999986 333333 3689999999999 7 99986 55
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchh
Q 009413 77 AFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKS 156 (535)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 156 (535)
.+.+...++...+++.+... +.+.+.+.+++.+++.+...+...++..|++|+ ++|+
T Consensus 86 ~~~i~~~~~~~~~a~~~~~~----------~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~-------------~~rg 142 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEPGT----------QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA-------------EERG 142 (491)
T ss_pred HHHHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------------hhhH
Confidence 66666767766666653211 677888899999999998889999999999998 6789
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhcc-ccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHH
Q 009413 157 LFFKWWYFGVCSGSLLGVTVMSYIQD-TFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAA 235 (535)
Q Consensus 157 ~~~~~~~~~~~lg~~i~~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (535)
++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+.. ++.++.+++++ +......+.
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~---~~~~~~~~~---- 214 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPK---TLEQAVVAP---- 214 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCcccccccc---chhhhHHHH----
Confidence 99999999999999999999999888 5799999998777665554443332 22111100000 000000000
Q ss_pred HhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHh-HHHHHHHHHHHhcC
Q 009413 236 ASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFP-IWTMLLMFAVIFQQ 314 (535)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 314 (535)
+.+ . .+ ++..+..+. ...........+..
T Consensus 215 ----------------------l~~---~------------------------~~-~~~~~~~ll~~~l~~~~~~~~~~~ 244 (491)
T PRK11010 215 ----------------------LRD---F------------------------FG-RNNAWLILLLIVLYKLGDAFAMSL 244 (491)
T ss_pred ----------------------HHH---H------------------------Hc-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 011111111 11111111122222
Q ss_pred CCceeeeecccccccCCCccccCcccccc----chhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHH
Q 009413 315 PATFFTKQGMTMKRNIGSNFKIPPATLQS----AITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIA 390 (535)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 390 (535)
.+.++. + . .+.+...+.. ...++.+++..+.+++.+++.+| +.+.++.++..+.
T Consensus 245 ~~~~l~------~-~----~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~ 302 (491)
T PRK11010 245 TTTFLI------R-G----VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVS 302 (491)
T ss_pred HHHHHH------H-h----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHH
Confidence 222111 1 1 1222222222 22344555556666655444332 2233333433333
Q ss_pred HHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009413 391 MIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 470 (535)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~ 470 (535)
.+.+...... ..+.+.+....++..+..+...+..+++..+..|++.+++..|+.+....+|..+++.
T Consensus 303 ~l~~~~l~~~------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~ 370 (491)
T PRK11010 303 NAGYWLLSIT------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGP 370 (491)
T ss_pred HHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3222211000 1123333444455444445555666788888999999999999999999999998888
Q ss_pred HHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 471 LITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 471 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
+.|++.+. .++...|.+.+++++++.+..+...
T Consensus 371 ~~G~l~~~----------------~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 371 VAGWFVEA----------------HGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHH----------------hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988872 2345677777777777776666654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=189.12 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 87 (535)
+.+.++.+...+........+ +.+++++|.|+.+.++..+.+.+++.+++++.|+++||+ ||||++..+.++++++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence 344444444455544444444 456889999999999999999999999999999999995 999999999999999987
Q ss_pred HHH---hhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 88 ALT---STAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 88 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
++. .++ +++.++++|+++|+|.|...+..++++.|..|+ ++|....+..+.
T Consensus 107 l~~~~~~a~-------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------------~~~~~~~s~~~~ 160 (438)
T PRK10133 107 LFWPAAEIM-------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------------SSGHFRLNLAQT 160 (438)
T ss_pred HHHHHHhcC-------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------------hhHHHHHHHHHH
Confidence 763 344 889999999999999999999999999987554 345556778888
Q ss_pred Hhhhhhhhhhhhhhhh
Q 009413 165 GVCSGSLLGVTVMSYI 180 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l 180 (535)
...+|..+||.+++.+
T Consensus 161 ~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 161 FNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999998887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-20 Score=215.29 Aligned_cols=344 Identities=14% Similarity=0.043 Sum_probs=199.7
Q ss_pred hhhhcCCCh-hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHH---HHHHHHHHHHhhcccccccccCccccc
Q 009413 32 LTDVVKMSN-SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSF---IYVVGLVALTSTAFSWAWSTTNKISSS 107 (535)
Q Consensus 32 l~~~l~~s~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (535)
+.++.+.+. ...++..+++.+.+.++++++|+++||+ |||+++..... +..+..+...... +
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~-------------s 107 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN-------------S 107 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-------------h
Confidence 333444333 4567888889999999999999999995 99997643222 2222222222234 8
Q ss_pred hHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchh
Q 009413 108 SAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWV 187 (535)
Q Consensus 108 ~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~ 187 (535)
++.++++|+++|++.+.+.|...+++.|++|+ ++|++++++.+++.++|.++||.+++++....+|+
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~ 174 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------------DELLGANALVEAGTFIAILLGTIIGGLATISGNFV 174 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 89999999999999999999999999999998 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccc
Q 009413 188 LGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGN 267 (535)
Q Consensus 188 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (535)
+.|....+..++++++.+...+. +..++..+.+.+...+..+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 220 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITLLKY--------------------------------- 220 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHHHHH---------------------------------
Confidence 99855544444443333332221 11111111000011111110000
Q ss_pred cCCCCCcccccccCCCCCCcchhhhHHHhhHHh-HHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchh
Q 009413 268 KKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFP-IWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAIT 346 (535)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 346 (535)
....+.++.... .......+.....+.+.++ ...++. -....+.+.....
T Consensus 221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~g~-~~~~~g~~~~~~~ 271 (1140)
T PRK06814 221 ---------------------AKADKRIWLAILGISWFWLVGAVVLSQLPLLA-------KETLGG-DENVATLFLAVFS 271 (1140)
T ss_pred ---------------------HhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHcCC-chHHHHHHHHHHH
Confidence 011111212111 1111112222222222211 111111 0111233334444
Q ss_pred HHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CCCccchhHHHHH
Q 009413 347 VSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQY-----SETVPLSIFWLLP 421 (535)
Q Consensus 347 ~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 421 (535)
++.+++..+.+++.. +. ...+.+..+.++.++..+.+.+.... ....+.. +-....+.+.+++
T Consensus 272 ~g~~ig~~~~g~l~~----~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 272 VGVAVGSFLASKLSE----GR-------ITLLYVPIGALLMGLFGLDLAFASSS-VPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred HHHHHHHHHHHHHhC----Cc-------eeeeeehHHHHHHHHHHHHHHhcccc-cccccccccchhhhhcccccHHHHH
Confidence 555555555554422 21 11122333433433333322221000 0000000 0000134566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 422 QYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 422 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..++.|++.+...+...+++.+.+|++.||+++|+.++.+.++..+++.+.+.+.+
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-19 Score=185.02 Aligned_cols=335 Identities=11% Similarity=0.028 Sum_probs=202.3
Q ss_pred HHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccch----HHHHHHHHHHHHHHHHH
Q 009413 14 AGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRY----STILAFSFIYVVGLVAL 89 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk----~~~~~~~~~~~~~~~~~ 89 (535)
.++-.+++..+.+++|.|++ ++|.|..++|++.+.+.+...+++++.|+++||+ ||| +.+.....+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence 44444666677788999995 5899999999999999999999999999999995 984 3332222111 11222
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
...+ +.+.+++.|++.|++.+...|...++..+. .+ +|++.++..+...++|
T Consensus 89 ~~~~-------------~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~--------------~~~~a~~~~~~~~~lg 140 (382)
T PRK11128 89 FGAH-------------SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK--------------QIGLDYGKVRLWGSIA 140 (382)
T ss_pred Hhcc-------------cHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh--------------hccCCcchHHHHHHHH
Confidence 2233 788888999999999999999888887775 22 3567777778888999
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCC
Q 009413 170 SLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPID 249 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (535)
..+||.+++++.+++|||..|++.++..++..+... ..+ +++++++++ ++. ++
T Consensus 141 ~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~---~~~~~~~~~-~~~-------------~~--------- 193 (382)
T PRK11128 141 FVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRP---TIMPQGESR-QQE-------------SA--------- 193 (382)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccC---CCCCccccc-ccc-------------cc---------
Confidence 999999999999999999999876654443332222 222 111111100 000 00
Q ss_pred CCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH-HHHHHHHHHHhcCCCceeeeecccccc
Q 009413 250 NSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI-WTMLLMFAVIFQQPATFFTKQGMTMKR 328 (535)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (535)
....+.+ ..+.|..+..+.. .+........+...+.+. +
T Consensus 194 ----~~~~~~~----------------------------i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~- 233 (382)
T PRK11128 194 ----GWPAWKA----------------------------LLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-------Q- 233 (382)
T ss_pred ----ccchHHH----------------------------HHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-------H-
Confidence 0000000 1111222222211 111111111111111111 1
Q ss_pred cCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009413 329 NIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407 (535)
Q Consensus 329 ~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (535)
+.+ .+ ...+.+..++.+..++...+.++ +.+| .++.+.+..+.++.++.++.+...
T Consensus 234 ~~g--~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~---------- 290 (382)
T PRK11128 234 AAG--YSASTIGYLWSLGVVAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGST---------- 290 (382)
T ss_pred HCC--CCHhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 111 11 01122222333333333333333 3333 333455677777777766655442
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 009413 408 YSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~~~~~i~~ 477 (535)
.+.+.+++..++.+++.+...+....+..+.. ++.+++.+++.+ ..+.+|..+|+.+.|.+.|
T Consensus 291 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 291 ------TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24556677788889999988899989888875 455688999886 5567888999999999987
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=212.62 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSN--SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
.|.+...++..++.++...+....+..++...++.+. ...+++.+++.++..++++++|+++||+ |||++++.+.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 3556666777777777776666667777766666654 4478999999999999999999999995 999999998877
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
.+++.++..+..... +++.+++.|+++|++.+...|...++++|.+|+ ++|++++++
T Consensus 87 ~~~~~~~~~~~~~~~----------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~~ 143 (1146)
T PRK08633 87 EVGLTLLIVLAYYLG----------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------------ENLSRANGL 143 (1146)
T ss_pred HHHHHHHHHHHHHHc----------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------------ccchhhhhH
Confidence 665554444332111 788999999999999999999999999999998 679999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccc
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDT 183 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~ 183 (535)
...+.++|.++|+.+++++...
T Consensus 144 ~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 144 LEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998765
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-19 Score=188.67 Aligned_cols=359 Identities=17% Similarity=0.149 Sum_probs=235.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+-.+++.....+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 45666777777777777666666655554 5677899999999999999999999999999995 999999999887766
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
....+.+..... .. +++.+++..++.|++.+...|+.++++.|..|+ ++..++.+..+.
T Consensus 88 ~~~~L~~l~~~~------~~--~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------------~~L~~A~al~s~ 146 (524)
T PF05977_consen 88 VALLLAVLAFFG------LL--SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------------EDLPAANALNSI 146 (524)
T ss_pred HHHHHHHHHHhC------cC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------------hhHHHHHHHHHH
Confidence 554443332111 01 778888999999999999999999999999998 568899999999
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccccc
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKI 244 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
..|++..+||.++|.+....|-.+.|.+.++..++.+.++...+++.+ +++. +.....+.+.+..+
T Consensus 147 ~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~----~~e~~~~~l~~G~r------- 212 (524)
T PF05977_consen 147 SFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSL----PRERFFSALREGLR------- 212 (524)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---cccc----chhhhhhhHHHHHH-------
Confidence 999999999999999988889889999988877766555444433211 1111 11111111111110
Q ss_pred ccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecc
Q 009413 245 VLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGM 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
+ ..+.+.+...+...+...++...+. ..++ .
T Consensus 213 -------------y------------------------------v~~~~~l~~~l~~~~~~~l~~~a~~---aLlP---l 243 (524)
T PF05977_consen 213 -------------Y------------------------------VRSSPPLRSVLLRSFLFNLFASAVW---ALLP---L 243 (524)
T ss_pred -------------H------------------------------HhcchHHHHHHHHHHHHHHhhhHHH---Hhhh---H
Confidence 0 0111111111111111111111111 1111 1
Q ss_pred cccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009413 325 TMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEM 404 (535)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 404 (535)
.....+++ -...-+.+.....++.+++..+..+ + ++ +.+..+.+..+.++.+++++.+++
T Consensus 244 ~a~~~l~~-~a~~yGll~a~~gvGai~Gal~~~~----l-~~------~~~~~~lv~~~~~~~a~~~~~lal-------- 303 (524)
T PF05977_consen 244 FARDVLGG-GASGYGLLLAAFGVGAILGALLLPR----L-RR------RLSSRRLVLLASLLFALALLLLAL-------- 303 (524)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHH----h-hc------ccCcchhhHHHHHHHHHHHHHHhc--------
Confidence 12222211 0011122233333444444333322 1 22 133445566677777777666665
Q ss_pred hccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 405 NQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+..++.+++.|++........++.+.+..|+++||++.+++++....+..+|..+.|.+.+
T Consensus 304 --------~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 304 --------SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566777888889999999999999999999999999999999999999999999999999887
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=185.84 Aligned_cols=178 Identities=10% Similarity=-0.106 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTD-VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|+++ +....+...|.-+.+.+.+.+.+.+ ++|+|.+|.+++.+.+.+++.+++++.|++.||+ |.|+++..+.++.+
T Consensus 34 r~l~-~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLW-ISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 4444 4555566666666666777777755 8999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhhcc-cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVALTSTAF-SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
+..++.+++.. ..+ +++.+++.|++.|++ |..++.....+++++|+ ++|+++.++.
T Consensus 112 i~~~~~~~a~~~~~~---------s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------------~~rG~A~Gi~ 168 (462)
T PRK15034 112 IPCVWLGIAVQNPNT---------PFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------------AKQGSALGIN 168 (462)
T ss_pred HHHHHHHHHHcccCC---------CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------------hHhHHHHHHH
Confidence 99888887510 000 889999999999998 77889999999999998 6789999998
Q ss_pred hhHhhhhhhhhhhhhhhhc-----c-------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 YFGVCSGSLLGVTVMSYIQ-----D-------------TFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
....|+|..+++.++..+. . ..+|+..+++-.+..++..++.++.
T Consensus 169 ~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 169 GGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777665555543322 1 3347766666555555544444444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=192.61 Aligned_cols=422 Identities=16% Similarity=0.104 Sum_probs=243.6
Q ss_pred hhHHHHHHHhhhh-----cCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 009413 23 GVASNLVTYLTDV-----VKMSN--SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFS 95 (535)
Q Consensus 23 ~~~~~~~~yl~~~-----l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~ 95 (535)
+..+....++++. ...+. .+.+++.+.+.++..+++++.|+++|++ |||++++.+.+++.++.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 4555555666542 22222 3558999999999999999999999995 999999999999999999999999
Q ss_pred ccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhh
Q 009413 96 WAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 175 (535)
|...++++|++.|+|.|+.....+.+++|..|+ +.|+...+..+...++|..++..
T Consensus 141 -----------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------------~~RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 141 -----------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------------HIRGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred -----------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 68999999999999999999955
Q ss_pred hhhhhccc-cchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCcc
Q 009413 176 VMSYIQDT-FGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTV 254 (535)
Q Consensus 176 ~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (535)
++....+. .+||..+.+..+..++..+..++.....+..-.++ ...++.+.+........ ++ ...+.+
T Consensus 197 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g-----~~~~a~~~l~~l~g~~~-----~~-~~~~~~ 265 (513)
T KOG0254|consen 197 INYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG-----RLEEAKRSLKRLRGLSP-----ED-VEVELE 265 (513)
T ss_pred HhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC-----ChHHHHHHHHHHhCCCC-----cc-hHHHHH
Confidence 54433332 48998888777665555444333221111110111 11222222211111000 00 000000
Q ss_pred chhhccccccccccCCCCCcccccccCC-CCCCcc-hhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCC
Q 009413 255 ELELQEQKPLCGNKKLGSSKELDEDEYP-KSGNHL-VKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGS 332 (535)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (535)
... . .... .....+.. .+.+.. +..+|+....+.+..++..... .....+...+-...+
T Consensus 266 ~~~--~-~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~------~~~~~Y~~~if~~~g- 326 (513)
T KOG0254|consen 266 LLK--I-KLLV---------EAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGI------NYVFYYSTTIFKSAG- 326 (513)
T ss_pred HHH--H-HHHH---------hhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCC------ceEEeehHHHHHhcC-
Confidence 000 0 0000 00000000 011111 1223333322323333322111 111111111111111
Q ss_pred ccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 009413 333 NFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETV 412 (535)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (535)
...+......+..+...+...+...++++++|| +.+..+...+.+++++++.......+.... ..
T Consensus 327 -~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~---~~ 391 (513)
T KOG0254|consen 327 -LKSDTFLASIILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPNS---SK 391 (513)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCCc---cc
Confidence 111111111111222222222223443433333 556778888888877766543221110000 01
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 009413 413 PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDM 492 (535)
Q Consensus 413 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~ 492 (535)
...+..+....++.........|..+.+..|.+|.+.|+.+.++....+++.+.+-...........
T Consensus 392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~------------- 458 (513)
T KOG0254|consen 392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL------------- 458 (513)
T ss_pred chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 2334445555555555666667778889999999999999999999999988888877666555411
Q ss_pred chhhhHHHHHHHHHHHHHHHH-HHHHhhccccccccccccc
Q 009413 493 KEARLDLYYWVLALASALSLL-LYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~ 532 (535)
.....|+.+++.+.+..+ ..++..+|+++++.||.++
T Consensus 459 ---~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 459 ---GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred ---cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 013455666677777776 7888899999999888765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=191.73 Aligned_cols=376 Identities=13% Similarity=0.114 Sum_probs=236.2
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHH
Q 009413 34 DVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFW 113 (535)
Q Consensus 34 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (535)
+++++|..+.+++.+++..|+.++++++|+++||+ |-|+++..+.++.+++.++..++... +.+.+++
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~-----------~~~~~~~ 133 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI-----------GFYLLLV 133 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh-----------cchhhHH
Confidence 36889999999999999999999999999999995 99999999999999999999888743 5557899
Q ss_pred HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccc-cchhHHHHH
Q 009413 114 SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDT-FGWVLGFAI 192 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~-~gw~~~f~~ 192 (535)
.|+++|++.|..+|+...+.+.+.|+ .+|+++.++.+.+..+|.+++.++.|++.+. .||+++|++
T Consensus 134 ~R~lqGl~~g~~~pa~~~i~~~W~P~-------------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 134 LRFLQGLGQGVLFPAIGSILAKWAPP-------------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred HHHHhHHHHhHHHhhhhceeeeECCH-------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 99999999999999999999999999 7899999999999999999999999999988 999999999
Q ss_pred HHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCC
Q 009413 193 PTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGS 272 (535)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (535)
.++..++..++.++.....|.+++.-+++ ..+.+......... ... ....|.+
T Consensus 201 ~g~~g~i~~~~w~~~~~d~P~~h~~is~~------El~~I~~~k~~~~~---~~~------~~vP~~~------------ 253 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYSDSPSKHPNISEK------ELKYIEKGKSEAHV---KKK------PPVPYKA------------ 253 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHH------HHHHHHhccccccc---CCC------CCCCHHH------------
Confidence 88877776666555544444444432210 00111000000000 000 0000110
Q ss_pred CcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceeeeecccccccCCCcccc-CccccccchhHHHH
Q 009413 273 SKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKI-PPATLQSAITVSII 350 (535)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 350 (535)
......++.. +..+.-...+....++.|+++- ..++ +++ ..+.+.++..+...
T Consensus 254 ----------------i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~-------~VL~--f~v~~~G~~salP~l~~~ 308 (466)
T KOG2532|consen 254 ----------------ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK-------EVLG--FDVRETGFLSALPFLAMA 308 (466)
T ss_pred ----------------HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHhC--CChhhhhHHHHHHHHHHH
Confidence 0111111111 2222223333344444444322 1111 222 24555555555555
Q ss_pred HHHHhhhhHHHhhhhHhhhccCCCCchHHHH--HHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHH
Q 009413 351 LLMPLYDKILIPFIHIIIRCEKGITVMQRMG--IGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGI 428 (535)
Q Consensus 351 v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 428 (535)
+...+.+.+.|++-+| .- ..+..+|+. ++....++.++.+.+.. .-+ .+..+.....+.
T Consensus 309 ~~k~~~g~lsD~l~~~-~l---s~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~~-~~~a~~~l~~~~ 369 (466)
T KOG2532|consen 309 IVKFVAGQLSDRLTFR-IL---SETTVRKIFNTIAFGGPAVFLLVLAFTS--------------DEH-RLLAVILLTIAI 369 (466)
T ss_pred HHHHHHHHHHHHHhhc-cC---chHhHHHHHHhHHHHHHHHHHHeeeecC--------------CCc-chHHHHHHHHHH
Confidence 5555555555544433 11 223334443 34555555555454431 001 111222222222
Q ss_pred HHHHHh-hhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHH
Q 009413 429 SDIFTV-IGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALA 507 (535)
Q Consensus 429 g~~~~~-~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
+..... +..+.-..+.+| +.-+..+|+.+....+.++++|.+++.+.. . . +...++..|++.+++
T Consensus 370 ~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-----------~-t~~eW~~VF~i~a~i 435 (466)
T KOG2532|consen 370 GLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-----------N-TREEWRIVFLIAAGI 435 (466)
T ss_pred HHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-----------C-CHHHHHHHHHHHHHH
Confidence 222222 222222222255 559999999999999999999999988763 1 0 124567889999999
Q ss_pred HHHHHHHHHHhh
Q 009413 508 SALSLLLYVMLC 519 (535)
Q Consensus 508 ~~~~~i~~~~~~ 519 (535)
.+++.+++.++.
T Consensus 436 ~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 436 LIVGNIIFLFFG 447 (466)
T ss_pred HHHhchheeEee
Confidence 999988877774
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=187.27 Aligned_cols=394 Identities=14% Similarity=0.074 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhccc
Q 009413 44 AKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQG 123 (535)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g 123 (535)
+.+++.+.++.++++..+|+++||+ |||..+..+.++..++.++..++.... +...++++|++.|+..|
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~----------~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP----------SFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHhH
Confidence 5788889999999999999999996 999999999888888777666664333 77889999999999999
Q ss_pred CCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhh--hccccchhHHHHHHHHHHHHHH
Q 009413 124 GYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSY--IQDTFGWVLGFAIPTIAMVTST 201 (535)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~--l~~~~gw~~~f~~~~~~~~~~~ 201 (535)
......+-++.|..|+ +.||......+++.++|..++..++.. +.+...|++.+....+..++.+
T Consensus 132 l~~~~~pmyl~E~sP~-------------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPK-------------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHHHHHHhhcChh-------------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999 679999999999999999999776542 3344569988888777666655
Q ss_pred HHHHhccc--ccccc-CCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCccccc
Q 009413 202 AFFSFGSQ--IYRYK-SDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDE 278 (535)
Q Consensus 202 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (535)
+...+... |+--. +.++ +++.+.++.-..+.+. ..+.++....+ +.. ...+
T Consensus 199 ~~l~~~PESPk~Ll~~k~~~-------~~A~~sl~~y~G~~~~--------~~~~e~~~~e~-~~~----------~~~~ 252 (485)
T KOG0569|consen 199 ALLPFLPESPKYLLIKKGDE-------EEARKALKFYRGKEDV--------EAEIEEMLREI-EEE----------ELEK 252 (485)
T ss_pred HHHhcCCCCcchHHHHcCCH-------HHHHHHHHHHhCCCcc--------hhHHHHHHHHH-HHh----------cccc
Confidence 55444332 22111 1222 2222211111111100 00000000000 000 0000
Q ss_pred ccCCCCCCcc--hhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchh---HHHHHHH
Q 009413 279 DEYPKSGNHL--VKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAIT---VSIILLM 353 (535)
Q Consensus 279 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~v~~ 353 (535)
++..+..+.+ ...|+.....+.+.+.+.. .... ....+...+-.+ .+.+.......+. ....+..
T Consensus 253 ~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~-----sGi~-ai~~Yst~i~~~----aG~~~~~a~~an~~~g~v~~~~t 322 (485)
T KOG0569|consen 253 KKQISLRQLLKNPTLRRPLLIGIVVSFAQQF-----SGIN-AIFFYSTSIFKT----AGFTPEEAQYANLGIGIVNLLST 322 (485)
T ss_pred ccCCcHHHHhcCcchhHHHHHHHHHHHHHHh-----cCcc-eeHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 1122222222212222211 1111 111111111111 1222222111221 1111222
Q ss_pred HhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHH-HHHH
Q 009413 354 PLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGI-SDIF 432 (535)
Q Consensus 354 ~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~~~ 432 (535)
-+...+ .+|.+| ++.+..+..++.+..+++........... ++-.+..+...++..+ ....
T Consensus 323 ~~~~~l----id~~gR-------RpLll~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~y~~i~~~~~~~~~f~~G 384 (485)
T KOG0569|consen 323 LVSPFL----IDRLGR-------RPLLLISLSLMAVALLLMSIALFLSNSFG-------SWLSYLCIAAIFLFIISFAIG 384 (485)
T ss_pred HHHHHH----HHhcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHhhhcC
Confidence 222222 333332 25667777777777766665543322210 0111222333333333 3334
Q ss_pred HhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHH
Q 009413 433 TVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSL 512 (535)
Q Consensus 433 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (535)
..|..+-+.+|.+|++.|+.++++....+++.+++-....+.+.+..+ .++|..+.+.+++..
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~ 447 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFL 447 (485)
T ss_pred CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999988776321 256778888888888
Q ss_pred HHHHHhhccccccccccccc
Q 009413 513 LLYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 513 i~~~~~~~~~~~~~~~~~~~ 532 (535)
+..+...||+|+|+-+|+.+
T Consensus 448 i~~~~~lPETkgr~~~eI~~ 467 (485)
T KOG0569|consen 448 IYLYRYLPETKGRTPYEIIE 467 (485)
T ss_pred HHHHHhCcccCCCCHHHHHH
Confidence 99999999999998776644
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=185.49 Aligned_cols=155 Identities=12% Similarity=0.157 Sum_probs=113.0
Q ss_pred HHHHHhhhhcC--CChhhHHHHHHH--HH---HHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccc
Q 009413 27 NLVTYLTDVVK--MSNSSAAKTVNS--WC---GFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWS 99 (535)
Q Consensus 27 ~~~~yl~~~l~--~s~~~~~~~~~~--~~---~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (535)
+...++.++.. .++++.+.+.+. +. +...+++++.|+++||+ ||||+++.+.++..++.+++++++......
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 44555555533 444555544433 22 33346889999999995 999999999999999998888876211000
Q ss_pred ccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhh
Q 009413 100 TTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSY 179 (535)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~ 179 (535)
.. ....+++.|+++|++.+...+...+++.|.+|+ ++|++..+..+.+..+|..+++.++..
T Consensus 93 ---~~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 93 ---IW--APILLLLARLIQGFSLGGEWGGAALYLAEYAPP-------------GKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred ---HH--HHHHHHHHHHHHHhhccccccccHHHhhhcCCc-------------ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 013578899999999999999999999999988 678999999999999999999887665
Q ss_pred hc--------cccchhHHHHHHHHHHHHH
Q 009413 180 IQ--------DTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 180 l~--------~~~gw~~~f~~~~~~~~~~ 200 (535)
+. +..+||+.|.+..+..++.
T Consensus 155 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 155 LSYLLGDDALLEWGWRIPFLVSAVLVLIG 183 (394)
T ss_pred HHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence 43 3568999998766654443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-20 Score=188.09 Aligned_cols=161 Identities=13% Similarity=0.028 Sum_probs=133.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|+.+..++..+......+...+.+|.++++++|+|..+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4566677777777777777777777789999999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+++.+++. +++.+++.|+++|++.+. .+...++++|.+|+ ++|+++.++...
T Consensus 80 ~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------------~~r~~~~~~~~~ 133 (366)
T TIGR00886 80 PCLWAGLAVQ------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-------------KIQGTALGLAAG 133 (366)
T ss_pred HHHHHHHHhh------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-------------hhhhHHHHHHHH
Confidence 9888877641 567788999999998654 46678899999988 578999999887
Q ss_pred Hhhhhhhhhhhhhhhhcc----------ccchhHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQD----------TFGWVLGFAI 192 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~----------~~gw~~~f~~ 192 (535)
..++|..+++.+++.+.. +.+||+.|++
T Consensus 134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 778888888777766543 3489999843
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=183.09 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=124.4
Q ss_pred HhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 009413 16 KERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFS 95 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~ 95 (535)
++...++.......+.+.+++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+.+ ..+
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-- 85 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-- 85 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--
Confidence 33333334334445567779999999999999999999999999999999995 99999999988888777666 444
Q ss_pred ccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhh
Q 009413 96 WAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 175 (535)
+.+.+++.|++.|++.+...+..+.++.|.+|+ +|+++.++++...++|..+++.
T Consensus 86 -----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~i~~~ 140 (355)
T TIGR00896 86 -----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ--------------RVGLMTGLYSMALMGGAALAAA 140 (355)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc--------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999988877888888887754 5899999999999999999999
Q ss_pred hhhhhcccc--chhHHHHHHHHHH
Q 009413 176 VMSYIQDTF--GWVLGFAIPTIAM 197 (535)
Q Consensus 176 ~~~~l~~~~--gw~~~f~~~~~~~ 197 (535)
+++++.++. +||+.|.+.+...
T Consensus 141 ~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 141 ATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Confidence 988887654 3998887655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=174.88 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=130.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-----cchH-HHHHHHHHHHH
Q 009413 11 IVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-----DRYS-TILAFSFIYVV 84 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~-~~~~~~~~~~~ 84 (535)
..+-+.+...+.-....+|.|+++ .|+|.+++|++...... .+..+++|+++|| + |||| .++.+.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 344555666666667888999984 69999999999776665 6999999999999 5 7776 67777888877
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+...+.+.+... +.+.+++..++.++..+...+...+++.|++|+ ++|+++.++...
T Consensus 81 ~~~~l~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------------~~r~~~~~~~~~ 137 (402)
T PRK11902 81 SIAAMAFCPPHA----------ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------------EERGAGAAVKVL 137 (402)
T ss_pred HHHHHHhcCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------------hhhhHHHHHHHH
Confidence 777766663211 566677777777888888889999999999988 678999999999
Q ss_pred Hhhhhhhhhhhhhhhhccc-cchhHHHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDT-FGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~ 202 (535)
+.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999998888875 5999999987776554433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=193.41 Aligned_cols=355 Identities=31% Similarity=0.524 Sum_probs=221.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCccc
Q 009413 72 YSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQK 151 (535)
Q Consensus 72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (535)
.|++..+.+++.+|.+++.++..++.. .+.. +.+.++++..+.++|.|+..|+..++++|++++ ++.
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~--~~~~--~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~-------~~~-- 67 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL--PSGI--QLGLFYIGLALIAVGTGGIKPNISPFGADQYDE-------DDD-- 67 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST-------TTT--
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh--hhhH--HHHHHHHHHHHHHhccccccccHHHHHHHHhcc-------cch--
Confidence 378999999999999997777655422 1111 457899999999999999999999999999998 432
Q ss_pred ccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcccccccc-CCCcccccchHHH-HH
Q 009413 152 SDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYK-SDETLKCTVSLIN-IV 229 (535)
Q Consensus 152 ~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 229 (535)
++|.++++++|++.|+|+.+++.+.+++.++.||.+.|.++.+.++++++.++..++++++. ++.+. +..+ ..
T Consensus 68 -~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~----~~~~~~~ 142 (372)
T PF00854_consen 68 -SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGS----PLTNFIK 142 (372)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S------S--SH
T ss_pred -hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCc----ccchhHH
Confidence 57899999999999999999999999999999999999999999999999999988887766 34433 3333 22
Q ss_pred HHHHHHHhcccccccccC---------CCCCCc-cchhhccccccccccCCCCCcccccccC-CCC-CCcchhhhHHHhh
Q 009413 230 QAIKAAASKLKNSKIVLP---------IDNSDT-VELELQEQKPLCGNKKLGSSKELDEDEY-PKS-GNHLVKNAKVVLK 297 (535)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 297 (535)
.......++.....+... .+.... ...... .... .....+.. .++ ..+.+++.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~k~~~~ 212 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFI--RAAV--------IFFPEIFFWALFCQVQRVEELKALIR 212 (372)
T ss_dssp HHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHH--HHHH--------HHCCCHHHHTTTSSTTTHHHCCHHHC
T ss_pred HHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhc--cchh--------hhhhhhhhcccCCccceeeeeeeeee
Confidence 223333332222110000 000000 000000 0000 00000000 001 1122344455555
Q ss_pred HHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCch
Q 009413 298 LFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVM 377 (535)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~ 377 (535)
.++.+.+...+...+.+...+...+...++..+.+.+.+|++.+++++.+.+++..|+.|++++|+.++ +++.+++
T Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~ 288 (372)
T PF00854_consen 213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPP 288 (372)
T ss_dssp HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------H
T ss_pred ccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhh
Confidence 555555556666666666666556655554444433678999999999999999999999999999882 2358889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH
Q 009413 378 QRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY 457 (535)
Q Consensus 378 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 457 (535)
.++.+|++++.+++.+....+..+.+..+..+ ..+.++.+..+++..++|....+...+...|.+|++..+..+|++
T Consensus 289 ~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~ 365 (372)
T PF00854_consen 289 QKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIW 365 (372)
T ss_dssp HHHHHH-HHHHHHHHTTTHHHH---HH----T---T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHH
Confidence 99999999999999888877764444443333 344477779999999999999999888777777777777766666
Q ss_pred HHHH
Q 009413 458 TSVF 461 (535)
Q Consensus 458 ~~~~ 461 (535)
+...
T Consensus 366 ~~~~ 369 (372)
T PF00854_consen 366 FALS 369 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-18 Score=175.83 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.++.+++..+...+.+ .+...+.+.+++++|.|..+.+++.+.+.+++.++.++.|++.||+ |||++++.+.++++++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 4555555555555555 4444455667889999999999999999999999999999999995 9999999999999999
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
.+++..+...+ +++.+++.|++.|+|.|...+..++++.+..|+ ++|++..+..+..
T Consensus 82 ~~l~~~~~~~~----------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 138 (410)
T TIGR00885 82 AFLFWPAAEIM----------NYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------------STATRRLNLAQSF 138 (410)
T ss_pred HHHHHHHHhhc----------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------------hHHHHHHHHHHHH
Confidence 87765443111 788899999999999999999999999998887 4578888888889
Q ss_pred hhhhhhhhhhhhhhhcc--------------------------ccchhHHHHHHHHHHHHH
Q 009413 166 VCSGSLLGVTVMSYIQD--------------------------TFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~--------------------------~~gw~~~f~~~~~~~~~~ 200 (535)
.++|..++|.+++.+.. ..+||++|++.++..++.
T Consensus 139 ~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~ 199 (410)
T TIGR00885 139 NPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV 199 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887632 236999998766654443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-18 Score=173.20 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=119.7
Q ss_pred hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc----ccchHHH-HHHHHHHHHHHHHHHhhcccccc
Q 009413 24 VASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY----WDRYSTI-LAFSFIYVVGLVALTSTAFSWAW 98 (535)
Q Consensus 24 ~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grk~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (535)
+.....+.+.+++|+|.++.++.... .+...+ .++.|+++||+ +||||.+ +.+.++.+++...+++.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~-- 81 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST-- 81 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch--
Confidence 33444455556889999999999655 333344 88999999994 3899974 566666666666665553211
Q ss_pred cccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhh
Q 009413 99 STTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS 178 (535)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~ 178 (535)
+.+.+....++.+++.+...+...+++.|++|+ ++|+++.++...+.++|.++++.+++
T Consensus 82 --------~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------~~r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 82 --------DLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------------EELGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------hhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777778888888889999999999987 67999999999999999999999999
Q ss_pred hhccccc--------hhHHHHHHHHHHHHHHHHHH
Q 009413 179 YIQDTFG--------WVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 179 ~l~~~~g--------w~~~f~~~~~~~~~~~~~~~ 205 (535)
++..+.+ ||..|++.++..++..+..+
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9888888 99999988876666554434
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-17 Score=171.37 Aligned_cols=358 Identities=13% Similarity=0.103 Sum_probs=203.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchH-HHHHHHHHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYS-TILAFSFIYVVGLV 87 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~~~~~~~~~~~~~~ 87 (535)
+..+..+..+..+..+++.|+++.+|+|...+|.+....-+.-.+..|+.|+++||. ||||| .++.+.+..+++..
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 344555566667778899999999999999999999999999999999999999993 37755 45566666766665
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
++...+..+. .. ....+++..++.+++.........++.+|+.++ + ++|++..++...+.+
T Consensus 96 l~f~~p~~~~-----~~--~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-------~-----~eR~~l~~~r~~~~~ 156 (444)
T PRK09669 96 LTFYTPDFGA-----TG--KIIYACVTYILLSLVYTAINVPYCAMPGAITND-------P-----RERHSLQSWRFALSF 156 (444)
T ss_pred HHHhCCCCCc-----ch--HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-------H-----HHHHHHHHHHHHHHH
Confidence 5554432110 00 345566666666666666666778899998765 2 468888888888888
Q ss_pred hhhhhhhhhhhhhcc-------ccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccc
Q 009413 168 SGSLLGVTVMSYIQD-------TFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLK 240 (535)
Q Consensus 168 lg~~i~~~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (535)
+|..+++.+...+.. ..+|+..+.+.++..++..+..+...++. .++++++ +.+.. +.+....
T Consensus 157 ~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~-~~~~~~~--~~~~~---~~~~~~~---- 226 (444)
T PRK09669 157 IGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER-YTPEVDN--SSSVW---KDLKLLL---- 226 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe-cCCCCcC--CCCHH---HHHHHHh----
Confidence 888777665443322 34677776665554444433333322211 1111111 00110 0000000
Q ss_pred ccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceee
Q 009413 241 NSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFT 320 (535)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 320 (535)
+ .|.+...+...+..............++.
T Consensus 227 -------------------------------------------------~-n~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 256 (444)
T PRK09669 227 -------------------------------------------------G-NSQWRIMFIFNVVLLTAVVTRGGATLYYV 256 (444)
T ss_pred -------------------------------------------------C-CchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 1 11111121111111111111222222222
Q ss_pred eecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 321 KQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK 400 (535)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (535)
.+.. .. ......+.....+..++..++..++ .+|.++ .+....+.++..+.........
T Consensus 257 ~~~~--~~------~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~-- 315 (444)
T PRK09669 257 NYVL--LR------PDLATLFLVTGMIAGLFGALLSERL----LGKFDR-------VRAFKWTIVAFVILSALIFFIP-- 315 (444)
T ss_pred eeec--CC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCh-------HHHHHHHHHHHHHHHHHHHHhC--
Confidence 2111 00 0001111222223334444555444 333322 2344445444443332222210
Q ss_pred HhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 401 RLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSALLIT 473 (535)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~lg~~~~~ 473 (535)
+.+.+.+.+..++.+++.+...+..++.+.|..+ ++..|...|+.++...+|..+|+.+.+
T Consensus 316 ------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 316 ------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556666778899999998988899888775 456788899999999999999999999
Q ss_pred HHHhhhcC
Q 009413 474 VIEALSSS 481 (535)
Q Consensus 474 ~i~~~~~~ 481 (535)
.+.+..+.
T Consensus 384 ~ll~~~Gy 391 (444)
T PRK09669 384 WILAWVDY 391 (444)
T ss_pred HHHHHcCC
Confidence 98885533
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=165.29 Aligned_cols=386 Identities=15% Similarity=0.154 Sum_probs=217.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
+....++..+.+-...++++.|++ +.|+|..|+|.+.+...+...+.+++.|.++||...+||.+.+..++.++.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666788999998 5789999999999999999999999999999996346777777666666655555
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
.... +.+.+++..++..+......|...++..+...+ +. ++-.|-|..+ .+|
T Consensus 86 ~~~~-------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~-------~~--~~YG~iRlwG------SiG 137 (400)
T PF03825_consen 86 AFSS-------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD-------RG--KDYGRIRLWG------SIG 137 (400)
T ss_pred HHhc-------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc-------cc--CCCCcchhhh------hHH
Confidence 5554 677777777778888888888888888887665 11 1122334433 344
Q ss_pred hhhhhhh-hhhhccccc---hhHHHHHHHHHHHHHHHHHHhccccccc-cCCCcccccchHHHHHHHHHHHHhccccccc
Q 009413 170 SLLGVTV-MSYIQDTFG---WVLGFAIPTIAMVTSTAFFSFGSQIYRY-KSDETLKCTVSLINIVQAIKAAASKLKNSKI 244 (535)
Q Consensus 170 ~~i~~~~-~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (535)
.+++... ++.+....+ ....+++.+...++.... .+..++.+. ++.+++ ..+.
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~----~~~~----------------- 195 (400)
T PF03825_consen 138 FIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKES----VKKL----------------- 195 (400)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCC----cccc-----------------
Confidence 4333221 122222112 223444444332222111 122222221 111111 0000
Q ss_pred ccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecc
Q 009413 245 VLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGM 324 (535)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (535)
...+ ...+ .++++....++.....+......++....++..
T Consensus 196 ------------~~~~-~~~l-----------------------lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~--- 236 (400)
T PF03825_consen 196 ------------LGLD-ALKL-----------------------LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE--- 236 (400)
T ss_pred ------------cchH-HHHH-----------------------hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 0000 0000 122222222222223333333333222211111
Q ss_pred cccccCCCccc-cCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 325 TMKRNIGSNFK-IPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLE 403 (535)
Q Consensus 325 ~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 403 (535)
+++ +. ...+...++..+.-+....+.++ +.+| ++..+.+.++.+...+-..+++..+.
T Consensus 237 -----~gg-~~~~~~g~~~~l~~~aEi~~f~~~~~----~~~r-------~g~~~ll~~a~~~~~vR~~l~a~~~~---- 295 (400)
T PF03825_consen 237 -----LGG-YSGSTIGILWALGVVAEIPFFFFSGR----FLKR-------FGIKWLLLLALVAYAVRWLLYAYFSD---- 295 (400)
T ss_pred -----ccc-chhhHHHHHHHHHHHHHHHHHHHHHH----HHHh-------cCHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 110 00 01122223333333333333333 2333 45557788888888888887776410
Q ss_pred hhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCC
Q 009413 404 MNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTS-VFGVGSFLSALLITVIEALSSSR 482 (535)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~lg~~lg~~~~~~i~~~~~~~ 482 (535)
+........++...+.|+..+....+...++.+.+|++.|++++++++. ..++|..+|..++|++.|..+.+
T Consensus 296 -------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 296 -------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred -------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 0011122234445689999999999999999999999999999999875 57899999999999999843221
Q ss_pred CCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 483 NGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFK 523 (535)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (535)
+. ..+..++.+.+++.++..+++++..|+++
T Consensus 369 ~~----------~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 369 GM----------FDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred hh----------hhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 10 11344566667777777777777765543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-16 Score=165.05 Aligned_cols=441 Identities=12% Similarity=0.017 Sum_probs=249.8
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh---cccchHHHHHH-HH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADS---YWDRYSTILAF-SF 80 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grk~~~~~~-~~ 80 (535)
+.++.++.+.+.-++++-...+++++|++ ++|.+....+++.....+...+.+|+.|+++|| .+||||.++.+ .+
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 45666777778888888888888888874 799999999999999999999999999999994 25999998875 55
Q ss_pred HHHHHHHHHHhhccccccc-cc-Ccc--ccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchh
Q 009413 81 IYVVGLVALTSTAFSWAWS-TT-NKI--SSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKS 156 (535)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 156 (535)
...++..+++++....... +. +.. ....+..+++..+..++.....+...++++|.+|+ ++ ++++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~-------~~----~~~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG-------DA----RRTR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-------hh----HHHH
Confidence 5566666666654221110 00 000 00113344444455567777778889999999998 32 2346
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhh--cccc-------------chhHHHHHHHHHHHHHHHHHHhccccccccCCCcccc
Q 009413 157 LFFKWWYFGVCSGSLLGVTVMSYI--QDTF-------------GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKC 221 (535)
Q Consensus 157 ~~~~~~~~~~~lg~~i~~~~~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (535)
.+.++.+...++|.++|+.++++. .+.+ +.+..|++.++..+++.++..+..++.+..++++.
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-- 229 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-- 229 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc--
Confidence 789999999999999999988764 1211 56788998887777666655554443322111110
Q ss_pred cchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH
Q 009413 222 TVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI 301 (535)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (535)
...+ .. +. +..+ ....+.+....+ .+--|.+.+++..
T Consensus 230 --~~~~--------~~--~~-------~~~~-~~~~~~~i~~~~-----------------------~~mP~~m~~l~~v 266 (477)
T TIGR01301 230 --INSE--------AA--PP-------SKHG-EEAFFGELFGAF-----------------------KYLPRPVWILLLV 266 (477)
T ss_pred --hhhh--------cc--cc-------cccc-hhhhHHHHHHHH-----------------------HHCCHHHHHHHHH
Confidence 0000 00 00 0000 000000000000 1111333344444
Q ss_pred HHHHHHHHHHhcCCCceeeeecccccccCCCccccCcc-ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHH
Q 009413 302 WTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPA-TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRM 380 (535)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~ 380 (535)
.++....|..+..+.+.+.-+..+-..+ ..+.....+ -..........+...+++.++.++.|+++++ ....
T Consensus 267 qffsW~a~f~~~~y~T~~vg~~v~~~~~-~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~------k~~~ 339 (477)
T TIGR01301 267 TCLNWIAWFPFILFDTDWMGREVYGGSV-NQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG------KRLW 339 (477)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHH
Confidence 4444444444443333322211100000 000000000 0011111112222224444555555554321 1333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc---cCCCCcc-ch-hHHHHHHHHHHHHHHHHHhhhhhhhhhccccc--hhHHHH
Q 009413 381 GIGMFLSIIAMIIAAIVETKRLEMNQ---QYSETVP-LS-IFWLLPQYILLGISDIFTVIGMQEFFYNEVPV--RMRTMG 453 (535)
Q Consensus 381 ~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~ 453 (535)
.++.++.++++....+......|... ..+...+ .. .+..++.+.+.|+........-++++++..|+ +..|..
T Consensus 340 ~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~ 419 (477)
T TIGR01301 340 GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLS 419 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcch
Confidence 67777777777766654321111000 0000001 11 36677888889999999999999999999995 455999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 454 FALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFK 523 (535)
Q Consensus 454 ~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (535)
+|+.|+.--+...+.....|.+.+..+ ++....+.+.++.++++++..++..++.+
T Consensus 420 mgilN~~I~lpQii~sl~~g~~~~~~g--------------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 420 MGVLNLAIVIPQIIVSLGSGPWDQLFG--------------GGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999998887777544321 12234555666667777777776666544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=158.47 Aligned_cols=177 Identities=13% Similarity=-0.014 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHH--HHHHHHHHhhhhhhh-HHhhhhcccchHHHHHHHHHH-
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKT--VNSWCGFTSMLPLVL-APLADSYWDRYSTILAFSFIY- 82 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grk~~~~~~~~~~- 82 (535)
...+...-+.+.+.+..+.+.+|.|++ +.|.|.+++|.. .....+...+.+|+. ++.+||+ ||||..+....+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 455667778888888888899999997 569999999997 455567777777777 5589995 9999876665332
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
..+............ ....++...++.++..+..-+...++..|..++ ++++...+..
T Consensus 81 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------------~~~~~~~~~~ 138 (390)
T TIGR02718 81 SACLASLALVGPDVA---------GAGWAVGLLACASLASATQDIATDGMAAEHFNG-------------RTLAKGNAVQ 138 (390)
T ss_pred HHHHHHHHcCCcchh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------hhhhHHHHHH
Confidence 222222221110000 122333333444455555555555565565444 4566677777
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
..+..+|..+|+...+++.++.|||..|++.++..++..+..+..
T Consensus 139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 777789999999888899999999999998887666554444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-16 Score=165.19 Aligned_cols=362 Identities=14% Similarity=0.106 Sum_probs=205.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hcccch-HHHHHHHHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLAD----SYWDRY-STILAFSFIYVVGL 86 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk-~~~~~~~~~~~~~~ 86 (535)
+..+..++.+..+..+++.|+++.+|+++..+|.+....-+.-.+..|+.|+++| | |||| +.++.+.+.++++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence 4455667777788889999999999999999999999999999999999999999 6 5995 45666777777776
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
.++...+..+. .. ....+++..++.+++.........++.+|..++ + ++|++..++-....
T Consensus 92 ~llf~~p~~~~-----~~--~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-------~-----~eR~~l~~~~~~~~ 152 (473)
T PRK10429 92 FLLFSAHLFEG-----TA--QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-------K-----REREQLVPYPRFFA 152 (473)
T ss_pred HHHHcCCCCCc-----cH--HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-------H-----HHHHHHHHHHHHHH
Confidence 55544321110 00 233455555666777777788888999998765 2 56899888877777
Q ss_pred hhhhhhhhhhhhhhc-------cccchhHHHHHHHHHHHHHHHHHHhccccccccCC-Ccc-cccchHHHHHHHHHHHHh
Q 009413 167 CSGSLLGVTVMSYIQ-------DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSD-ETL-KCTVSLINIVQAIKAAAS 237 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~-------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 237 (535)
++|+.+++.+...+. +..+|+....+.++..++..+..+...++.++++. +.+ +++.+..+..+. .
T Consensus 153 ~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~-- 227 (473)
T PRK10429 153 SLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVAL---I-- 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHH---H--
Confidence 777666555444321 12346655555444444333333332222110000 000 000011100000 0
Q ss_pred cccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCc
Q 009413 238 KLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPAT 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (535)
.++ |.+...+...+.........+....
T Consensus 228 ---------------------------------------------------~~n-~~~~~ll~~~~~~~~~~~~~~~~~~ 255 (473)
T PRK10429 228 ---------------------------------------------------YKN-DQLSCLLGMALAYNIASNIINGFAI 255 (473)
T ss_pred ---------------------------------------------------hcC-HHHHHHHHHHHHHHHHHHHHhhhee
Confidence 011 2222222222222222222222222
Q ss_pred eeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009413 318 FFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397 (535)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 397 (535)
++..+..+ + ......+..+..+..++..++..++ .+|+++ .+.+.++..+..++.+.....
T Consensus 256 y~~~y~~~-~-------~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~gk-------k~~~~~~~~~~~~~~~~~~~~ 316 (473)
T PRK10429 256 YYFTYVIG-D-------ADLFPYYLSYAGAANLVTLILFPRL----VKSLSR-------RILWAGASIFPVLSCGVLLLM 316 (473)
T ss_pred eEEEEECC-C-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCc-------HHHHHHHHHHHHHHHHHHHHH
Confidence 33322111 0 0011122233334455555555554 333322 244555555544444333221
Q ss_pred HHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHHHH
Q 009413 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSAL 470 (535)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~lg~~ 470 (535)
... ...+.+.+++..++.+++.+...+...++..|..+ ++..|...|...+...+|..+++.
T Consensus 317 ~~~-----------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~ 385 (473)
T PRK10429 317 GLA-----------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF 385 (473)
T ss_pred hcc-----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 000 01234555666677888888888888888888865 556777899999999999999999
Q ss_pred HHHHHHhhhc
Q 009413 471 LITVIEALSS 480 (535)
Q Consensus 471 ~~~~i~~~~~ 480 (535)
+.+++.+..+
T Consensus 386 i~g~~l~~~G 395 (473)
T PRK10429 386 FIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHcC
Confidence 9999887543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-22 Score=211.42 Aligned_cols=393 Identities=14% Similarity=0.088 Sum_probs=222.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHh
Q 009413 41 SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISL 120 (535)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 120 (535)
.+.++..+...++..++.+++|+++||+ |||++++.+.++..++.++..+++... +++.+.++|++.|+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~R~~~G~ 114 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSYN----------NFWMLLIGRFLIGF 114 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccccc----------cccccccccccccc
Confidence 3568899999999999999999999995 999999999999999999998886321 67889999999999
Q ss_pred cccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccc---cchhHHHHHHHHHH
Q 009413 121 GQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDT---FGWVLGFAIPTIAM 197 (535)
Q Consensus 121 g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~---~gw~~~f~~~~~~~ 197 (535)
+.|+..+....++.|..|+ +.|+...+..+....+|..++..++..+... .+||..+.+..+..
T Consensus 115 ~~g~~~~~~~~~~~E~~~~-------------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~ 181 (451)
T PF00083_consen 115 GIGGAYVVSPIYISEIAPP-------------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPS 181 (451)
T ss_pred ccccccccccccccccccc-------------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998 6789999999999999998887765444333 34999888777655
Q ss_pred HHHHHHHHhcc--ccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcc
Q 009413 198 VTSTAFFSFGS--QIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKE 275 (535)
Q Consensus 198 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (535)
++..+..++.. |++...+.+.+++++... . .++.+. .+....+..+ +
T Consensus 182 l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~-------~-~~~~~~------------~~~~~~~~~~-----------~ 230 (451)
T PF00083_consen 182 LLVLLLRFFLPESPRWLLSKGRDEEAEKVLR-------K-LRGKEI------------EDEEIEEIKA-----------E 230 (451)
T ss_pred ccccccccccccccceecccccccccccccc-------c-cccccc------------cccccccccc-----------c
Confidence 44333322222 332222222221111111 1 000000 0000000000 0
Q ss_pred cccccC--CCCCCcchh--hhHHHhhHHhHHHHHHHHHH-HhcCCCceeeeecccccccCCCccccCcc-ccccchhHHH
Q 009413 276 LDEDEY--PKSGNHLVK--NAKVVLKLFPIWTMLLMFAV-IFQQPATFFTKQGMTMKRNIGSNFKIPPA-TLQSAITVSI 349 (535)
Q Consensus 276 ~~~~~~--~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 349 (535)
..+++. ..|.+.+.. .+++....+.+...+..... ........+ ..+ .+.... ..........
T Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i-------~~~----~~~~~~~~~~~~~~~~~ 299 (451)
T PF00083_consen 231 KKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI-------FEN----AGISNSFLATLILGLVN 299 (451)
T ss_pred cccccccceeeeecccccccccccccccccccccccccccccccccccc-------ccc----ccccccccccccccccc
Confidence 000000 112222222 12333333322222211110 011111111 111 111111 1111111111
Q ss_pred HHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccCCCCccchhHHHHHHHHHHHH
Q 009413 350 ILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAA-IVETKRLEMNQQYSETVPLSIFWLLPQYILLGI 428 (535)
Q Consensus 350 ~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 428 (535)
.+...+...+ .+|.+|| +.+..+.+++.+..+.+. ..... ... ....+...++...+....
T Consensus 300 ~~~~~~~~~~----~~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~i~~~~l~~~~ 361 (451)
T PF00083_consen 300 FLGTLLAIFL----IDRFGRR-------KLLIIGLLLMAICSLILGIIFFLG--VSS-----SSWWSILSIVFLALFFAF 361 (451)
T ss_pred cccccccccc----ccccccc-------cccccccccccccccccccccccc--ccc-----ccccccccceeeeecccc
Confidence 1111121122 2333322 334555555555554443 11000 000 000122222222222223
Q ss_pred HHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHH
Q 009413 429 SDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALAS 508 (535)
Q Consensus 429 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (535)
......+..+.+..|.+|++.|+++.|+....+++++.+++.+.+.+.+.. +....++..++++
T Consensus 362 ~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------------~~~~~~~i~~~~~ 425 (451)
T PF00083_consen 362 FSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------------GGWGVFLIFAGVC 425 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc----------------cccccchhhHHHH
Confidence 333456777789999999999999999999999999999998887765411 1123566677888
Q ss_pred HHHHHHHHHhhcccccccccccccc
Q 009413 509 ALSLLLYVMLCKFFKSRTDNLDNEA 533 (535)
Q Consensus 509 ~~~~i~~~~~~~~~~~~~~~~~~~~ 533 (535)
++..+..+++.+|+++|+.||.++.
T Consensus 426 ~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 426 LIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHhheeEEEeeCCCCCHHHHHhh
Confidence 8888888889999999999998763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=167.40 Aligned_cols=140 Identities=15% Similarity=0.093 Sum_probs=126.3
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHH
Q 009413 34 DVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFW 113 (535)
Q Consensus 34 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (535)
+..+.+.....+..+.+.++..+++++.|+++|| +|||++++.++++.+++.++.++++ |++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------~~~~~~~ 176 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------NYWMFLI 176 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------cHHHHHH
Confidence 5667788899999999999999999999999999 5999999999999999999999999 9999999
Q ss_pred HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHH
Q 009413 114 SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIP 193 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~ 193 (535)
.|++.|++.++...+...+++|.+++ +.|+.+... ......++.+++.+++++.. +||+.+++.
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~-------------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSP-------------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCc-------------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 99999999999999999999999999 678999988 77778888888888888877 899999987
Q ss_pred HHHHHHHHHH
Q 009413 194 TIAMVTSTAF 203 (535)
Q Consensus 194 ~~~~~~~~~~ 203 (535)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 7766655444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-16 Score=163.16 Aligned_cols=358 Identities=15% Similarity=0.145 Sum_probs=192.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchHHH-HHHHHHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYSTI-LAFSFIYVVGLV 87 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~~-~~~~~~~~~~~~ 87 (535)
+..+..+..+..+.++++.|+++.+|++..++|.+.....+...+..++.|+++||. +||||.. ..+.+...+...
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 344566677777778889999999999999999999999999999999999999994 3777754 455444444444
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH--
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG-- 165 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-- 165 (535)
++...+... .. .. .....++..++.+++.+...+...++..+..++ . ++|.+..++-..+
T Consensus 95 ~~~~~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~-----~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 95 LVFWVPTDW--SH--SS--KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ-------P-----QSRARLGAARGIAAS 156 (448)
T ss_pred HHHhCcCCC--Cc--ch--HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC-------H-----HHHHHHHHHHHHHHH
Confidence 332222100 00 00 233344555667888888888878887777665 2 3466665554433
Q ss_pred ---hhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhccccc
Q 009413 166 ---VCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNS 242 (535)
Q Consensus 166 ---~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (535)
.+++..++|.+.+.........+..+. .+..+++.++.+......+++.+++.++ ....+ .+...
T Consensus 157 ~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~-~~~~~---~~~~l------- 224 (448)
T PRK09848 157 LTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQ-PSLKI---SLQTL------- 224 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccC-CCHHH---HHHHH-------
Confidence 345566666665433211111111111 1111122222222211111111111100 01000 00000
Q ss_pred ccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeee
Q 009413 243 KIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQ 322 (535)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 322 (535)
.++ |.+.......+........+.....++..+
T Consensus 225 ----------------------------------------------~~n-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (448)
T PRK09848 225 ----------------------------------------------KRN-RPLFMLCIGALCVLISTFAVSASSLFYVRY 257 (448)
T ss_pred ----------------------------------------------hCC-chHHHHHHHHHHHHHHHHHHhhhheeeEee
Confidence 011 111121111111111111222222222221
Q ss_pred cccccccCCCccccCccccccch-hHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 323 GMTMKRNIGSNFKIPPATLQSAI-TVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKR 401 (535)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 401 (535)
..+.+ .. ...+...+ .+..++..++..++ .+| .++.+.+.++.++..++++.+.+..
T Consensus 258 ~~g~~-------~~-~~~~~~~~~~~~~~~~~~l~~~l----~~r-------~g~~~~~~~g~~~~~i~~~~~~~~~--- 315 (448)
T PRK09848 258 VLNDT-------GL-FTVLVLVQNLVGTVASAPLVPGM----VAR-------IGKKNTFLIGALLGTCGYLLFFWVS--- 315 (448)
T ss_pred ecCCh-------HH-HHHHHHHHHHHHHHHHHHHHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHHHcC---
Confidence 11110 00 11111111 22334444444443 333 2333566777777777766554321
Q ss_pred hhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccch-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 402 LEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVR-------MRTMGFALYTSVFGVGSFLSALLITV 474 (535)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~lg~~lg~~~~~~ 474 (535)
..+.+...+..++.++|++...+..++...+..|.+ .+|...|+.++.+.+|..+|+.+.+.
T Consensus 316 -----------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 316 -----------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124455666678889999999999999988888754 56999999999999999999999998
Q ss_pred HHhhh
Q 009413 475 IEALS 479 (535)
Q Consensus 475 i~~~~ 479 (535)
+.+..
T Consensus 385 ~l~~~ 389 (448)
T PRK09848 385 ILGLS 389 (448)
T ss_pred HHHHc
Confidence 88754
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=160.40 Aligned_cols=388 Identities=10% Similarity=0.008 Sum_probs=221.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
++.+......++-.+++-...++++.+++++.|+|.+++|.+.++..+...+.+|+.|.++||+ |.||-++..+.+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4677777777777777777779999999999999999999999999999999999999999995 977755444333222
Q ss_pred --HHHHH-HhhcccccccccCccccchH-HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 85 --GLVAL-TSTAFSWAWSTTNKISSSSA-FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 85 --~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+-... .+.+.... |.+ ..+++-+..++...+..|..-+++.+.. ++.+-=++
T Consensus 86 l~~pff~~v~~pll~~---------n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s---------------r~~~feYG 141 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQS---------NFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS---------------RRNGFEYG 141 (412)
T ss_dssp TCHHHHHHTHHHHHHT---------T-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH---------------HHHSS-HH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHcccchHHHHHHHHHH---------------HHhcCCcc
Confidence 22111 12211000 211 1222222233333333344444444321 12233344
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcc--cccchHHHHHHHHHHHHhc
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETL--KCTVSLINIVQAIKAAASK 238 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 238 (535)
...+...+|.+++..++|++.+ .+.+..|++.....++.+++.+..++..+++.+..+ +++++..
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKV------------ 208 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS-----------------
T ss_pred hHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCC------------
Confidence 4455678888889899998876 466778887666555444444444432221111111 0000000
Q ss_pred ccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHH-HHHHHHhcCCCc
Q 009413 239 LKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTML-LMFAVIFQQPAT 317 (535)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 317 (535)
+.+..++ ....|+.+.++...... ..+....+|.+.
T Consensus 209 ---------------~~~~~~~----------------------------l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~ 245 (412)
T PF01306_consen 209 ---------------SLKDVLS----------------------------LFKMRNFWFFVLFVIGVAAIYDVFDQQFPI 245 (412)
T ss_dssp ----------------HHHHHH----------------------------HTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHH----------------------------HhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 11223344433333222 334444444444
Q ss_pred eeeeecccccccCCCccccCccccccchh---HHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 009413 318 FFTKQGMTMKRNIGSNFKIPPATLQSAIT---VSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIA 394 (535)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 394 (535)
++..+.... +.....+...+. +.-++...+. .++.+|++ +.+.+.++..++.+-....
T Consensus 246 y~~~~f~~~--------~~g~~~~G~l~s~~v~~E~~~m~~~----p~li~rig-------~k~~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 246 YFASFFQSA--------GQGNQMYGYLWSVQVFLEALMMFFS----PWLINRIG-------AKNLLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHTSSSH--------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc--------ccChhHHhHHHHHHHHHHHHHHHHH----HHHHHhcC-------hHhHHHHHHHHHHHHHHHH
Confidence 333221111 111222222222 3333333333 33445533 3367788888888887777
Q ss_pred HHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 009413 395 AIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLIT 473 (535)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~~~~ 473 (535)
++. .+.+++.+.-.+.++-.........-|+.+.+|++..++...+. ++..++|..+.+.+.|
T Consensus 307 ~~~----------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 307 GFA----------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp HT------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred hhh----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 763 46778888999999999999999999999999999999999986 5889999999999999
Q ss_pred HHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 474 VIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 474 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
.+.| +-+++..|++.+++.++..++..+..++.++
T Consensus 371 ~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 371 YLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 9998 2345567788888877777776666554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=158.28 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=137.7
Q ss_pred hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHH
Q 009413 35 VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWS 114 (535)
Q Consensus 35 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (535)
+.+-+++++|++...+.+.+.+..++.|.+.|| +|+|-.++.|++++....+++++.. +++.++++
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------sy~~l~vA 165 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------SYPMLFVA 165 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHH
Confidence 456678999999999999999999999999999 5999999999999999999999998 99999999
Q ss_pred HHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHH
Q 009413 115 LCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPT 194 (535)
Q Consensus 115 ~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~ 194 (535)
|.+||+|.+....+..++++|.||+ + .+|++++++.--...+|-.+||.++|.+.+..|.+.+|.+.+
T Consensus 166 R~LQgvgsA~~~tsglamlAd~f~~-------d-----~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~ 233 (464)
T KOG3764|consen 166 RSLQGVGSAFADTSGLAMLADVFPE-------D-----NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA 233 (464)
T ss_pred HHHhhhhHHHHHhhhHHHHHHHccc-------c-----hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH
Confidence 9999999999999999999999998 2 579999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcccc
Q 009413 195 IAMVTSTAFFSFGSQI 210 (535)
Q Consensus 195 ~~~~~~~~~~~~~~~~ 210 (535)
+.+++-..+.++..+.
T Consensus 234 ~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 234 IVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHHHHHHHHheeCc
Confidence 8888766666665553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=160.89 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=135.9
Q ss_pred hHHHHHHHhhhhcCCChhh-HHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 24 VASNLVTYLTDVVKMSNSS-AAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 24 ~~~~~~~yl~~~l~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
..++..+|+.+++|+|.++ .|.+.+++..++.++.+++|+++||+ |.|+++..+.+..++..++..++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3466788999999999999 99999999999999999999999995 999999999999999999999987
Q ss_pred ccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 103 KISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+...+.+.|++.|++.|+.. +...++..++|+ ++|+++.++...+.++|.+++++++++ ..
T Consensus 114 ----Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------------kER~ratsi~~sg~~vG~~Ia~~L~ql-l~ 174 (511)
T TIGR00806 114 ----SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------------SRYQRAAAYSRAAVLLGVFLSSVLGQL-LV 174 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 89999999999999999999 999999999999 789999999999999999999999999 45
Q ss_pred ccchhHHHHH---HHHHHHHHHHHHHhc
Q 009413 183 TFGWVLGFAI---PTIAMVTSTAFFSFG 207 (535)
Q Consensus 183 ~~gw~~~f~~---~~~~~~~~~~~~~~~ 207 (535)
.+||++-+.+ .....++++++.++.
T Consensus 175 s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 175 TLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788865544 344444454444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-16 Score=162.36 Aligned_cols=355 Identities=15% Similarity=0.170 Sum_probs=220.5
Q ss_pred HHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hcccchHH-HHHHHHHHHHHHHHH
Q 009413 15 GKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLAD----SYWDRYST-ILAFSFIYVVGLVAL 89 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk~~-~~~~~~~~~~~~~~~ 89 (535)
+...+.......+++.|+.+.+|+++...|.+.....+.-.+..|+.|+++| | |||||- ++.+.+...++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4445555556678899999999999999999999999999999999999999 7 698775 556777777777777
Q ss_pred Hhh-cccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhh
Q 009413 90 TST-AFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCS 168 (535)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 168 (535)
... +.... ... ....+.+..++..++......+..++.+|..++ + ++|.+..++-..+..+
T Consensus 90 f~~~p~~~~----~~~--~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~-------~-----~~R~~l~~~~~~~~~~ 151 (428)
T PF13347_consen 90 FSPPPAGLS----FTA--KLVWLFVFYILFDIAYTFVQIPYNALIPELTPD-------P-----DERTRLSSWRMIFSMI 151 (428)
T ss_pred hccccchhh----hhh--HHHHHHHHHHHHHHhhhhccCchhhcCcccccc-------H-----hhhhhHHHHHHHHHHH
Confidence 655 21110 000 234456666777888888888889999999887 2 4688999888888888
Q ss_pred hhhhhhhhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccc
Q 009413 169 GSLLGVTVMSYIQDTF-------GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKN 241 (535)
Q Consensus 169 g~~i~~~~~~~l~~~~-------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
|..+...+.+.+.+.. +|++...+.++..++..++.+...++.+++.++++ +
T Consensus 152 g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~----~----------------- 210 (428)
T PF13347_consen 152 GSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE----K----------------- 210 (428)
T ss_pred HHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc----c-----------------
Confidence 8865555555543222 58877776666555554444443333111111111 0
Q ss_pred cccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeee
Q 009413 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTK 321 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (535)
..++.+ . . .+ ..+.|....++...+.....+...+....++.
T Consensus 211 -------------~~~~~~-~--~--------~~-------------~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~- 252 (428)
T PF13347_consen 211 -------------KISLRD-S--L--------RS-------------LFRNRPFRILLLAFFLQWLAFALMNTFLPYYF- 252 (428)
T ss_pred -------------cccccc-c--h--------hh-------------hcccchHHHHHHHHHHHHhhhhhhhhHHHHHH-
Confidence 000000 0 0 00 01111122222222222111111111111111
Q ss_pred ecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 322 QGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKR 401 (535)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 401 (535)
+..++. ......+..+..+..++..|+..++. +|.++ .+.+..+.++.+++.+...+..
T Consensus 253 -----~~vl~~--~~~~~~~~~~~~~~~~v~~~~~~~l~----~r~gk-------~~~~~~~~~~~~~~~~~~~~~~--- 311 (428)
T PF13347_consen 253 -----TYVLGN--EGLISIFMLIFFVASIVGSPLWGRLS----KRFGK-------KKVYIIGLLLAALGFLLLFFLG--- 311 (428)
T ss_pred -----HHHhcC--chhhHHHHHHHHHHHHHHHHHHHHHH----HHccc-------eeehhhhHHHHHHHHHHHHHHH---
Confidence 111111 11122333344555566666665543 34332 2556777777777777666542
Q ss_pred hhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 402 LEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-------VRMRTMGFALYTSVFGVGSFLSALLITV 474 (535)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~lg~~~~~~ 474 (535)
..+.++.++..++.+++.+......++...|..+ ++..|...|+.++...++..+++.+.+.
T Consensus 312 -----------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 312 -----------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred -----------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 1366788889999999999988888888888776 4567999999999999999999999998
Q ss_pred HHhhh
Q 009413 475 IEALS 479 (535)
Q Consensus 475 i~~~~ 479 (535)
+.+..
T Consensus 381 ~l~~~ 385 (428)
T PF13347_consen 381 LLALV 385 (428)
T ss_pred HHHHh
Confidence 88754
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=167.90 Aligned_cols=416 Identities=16% Similarity=0.136 Sum_probs=246.5
Q ss_pred HHHHHHHHHhhhhhhhhHH---HHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVAS---NLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~---~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+++..+......+++.. .+-..++++++.+.++++|+.+.......++.|+.+.+.||+ |.|.+.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 3344445555555555543 345666789999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHH-HHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWS-LCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
|.++..++. +.+.+++. -++.|+|.|..+..+..++..+|++ +|+.+.++..
T Consensus 124 g~~lssF~~-------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--------------kR~lA~Gia~ 176 (509)
T KOG2504|consen 124 GLLLSSFAT-------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--------------KRALATGIAV 176 (509)
T ss_pred HHHHHHHHh-------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--------------HHHHHHhhhh
Confidence 999999998 88776655 5667999999999999999988886 7999999998
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSK 243 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.+..+|..+=|.+..++.+..|||..+++-....+-.++.....++...+.++++.+ ..+. .....+...
T Consensus 177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~---~~~~-------~~~~~~~~~ 246 (509)
T KOG2504|consen 177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK---DLRN-------SAASVESTP 246 (509)
T ss_pred ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh---hhcc-------ccccccccc
Confidence 899999998888889999999999999887766655555555555533322222110 0000 000000000
Q ss_pred cccCCCCCCccchhhccccccccccCCCCCcccccccCCCCC------------CcchhhhHHHhhHHhHHHHHHHHHHH
Q 009413 244 IVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSG------------NHLVKNAKVVLKLFPIWTMLLMFAVI 311 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (535)
.....+..+ ...... + ...+.....+++.+++. .+..+++.-+...+...+....+...
T Consensus 247 ~~~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p 317 (509)
T KOG2504|consen 247 KPVELRISE-RDSGLK--K------LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVP 317 (509)
T ss_pred ccccccccc-CCCCCC--c------ccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 0 00000000000111110 11112211111111112222222222
Q ss_pred hcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHH
Q 009413 312 FQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAM 391 (535)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 391 (535)
+...+.+.. ..+.+. .....+.++..+.-+++-++.+.+.+.. .........++++..+++.
T Consensus 318 ~~~l~~~~~--~~g~~~-------~~aa~l~Siigi~~i~gRi~~G~laD~~---------~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 318 FVYLPSYAK--SLGLSS-------NDAAFLLSIIGVSDIIGRIILGLLADKP---------GIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHh--hcCCCh-------hhhHHHHHHHHHhhhhhhhhhhhhcCcc---------ccchHHHHHHHHHHHHHHH
Confidence 211111111 001111 0112222222222333323332221111 1223344566677777766
Q ss_pred HHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 009413 392 IIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALL 471 (535)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~ 471 (535)
+..... .+.+.++...++.|+..+...........+..+.+.-+.+.|+..+.++++..+|+.+
T Consensus 380 ~~~p~~----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPi 443 (509)
T KOG2504|consen 380 LFLPFA----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPI 443 (509)
T ss_pred HHHHHh----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccc
Confidence 555542 3556777777888888888887777889999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 472 ITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 472 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
.+++.|.+ +.+...|+..+.+.+++.+..++..
T Consensus 444 ag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 444 AGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99888755 2244556566666666655444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-15 Score=156.05 Aligned_cols=374 Identities=11% Similarity=0.107 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhccc-----chHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD-----RYSTILAFSFI 81 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~~~~~~~~~ 81 (535)
..++....+.+.+. +.+...++.++++++|+|.++.+...+...+...+-++ +|+++||+ + ||+.++.+.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34555577888888 77888899999999999999999999988888777555 99999995 7 67767777655
Q ss_pred HH-HHHHHHHhhcccccccccCccccc-hHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 82 YV-VGLVALTSTAFSWAWSTTNKISSS-SAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
.. ++...++..+ + .....+.+++.+++.+..-....++..|..++ ++ ..++...
T Consensus 105 ~~~~~~~~l~~~~-------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~-------~~----~~~~~~~ 160 (468)
T TIGR00788 105 GSAILYGLLPGKV-------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE-------SP----SAGPSLV 160 (468)
T ss_pred HHHHHHHhccccc-------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhc-------CC----CcCCCee
Confidence 52 3222222212 3 33344477888898888888999999998774 22 2345566
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccc-cchHH-HHHHHHHHHHh
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKC-TVSLI-NIVQAIKAAAS 237 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~ 237 (535)
+..+...++|..+|+.++|++.+..+|+..|++.+...++..+..++.+++.+...++.+++ +.... ...+... ..+
T Consensus 161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (468)
T TIGR00788 161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLA-NVK 239 (468)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHH-HHH
Confidence 66666678999999999999999999999998877766655333333322110111111100 00000 0000000 000
Q ss_pred cccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCc
Q 009413 238 KLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPAT 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (535)
+. -.+.++ ...++.++..+.+.+.. +.. ......
T Consensus 240 ~~---------------~~~l~~----------------------------~l~~~~i~~~l~fifl~--~~~-~~~~~~ 273 (468)
T TIGR00788 240 VQ---------------ILGLRG----------------------------AIQLLEIAKPLIFIFLS--YAN-LPGASG 273 (468)
T ss_pred HH---------------HHHHHH----------------------------HHhcHHHHHHHHHHHHH--Hhh-cCCCCc
Confidence 00 000000 01112222222111110 111 111111
Q ss_pred eeeeecccccccCCCccccCcccc---ccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 009413 318 FFTKQGMTMKRNIGSNFKIPPATL---QSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIA 394 (535)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 394 (535)
.+..+ .... .+.++..+ ..+..++.+++..+.++. .+| .+..+.+.++.++..++.+..
T Consensus 274 ~~f~~---~~~~----lG~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 274 SVFCA---TTQC----LPGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred eeEEE---Eccc----CCCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHHHHHHHHHHHHHHhCc
Confidence 11111 0111 12233333 233334444444444433 222 445566677777766665443
Q ss_pred HHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 395 AIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITV 474 (535)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~ 474 (535)
..... +.+.. .| ....+.+....++.+++.++...+...++.+..|++.+|+..|+.+...++|..+++.+++.
T Consensus 336 ~~l~~-~~~~~--~g---i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 336 LILVK-RWNLA--FG---ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred eeeee-ccccc--cC---CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 00000 00 11233455666777888888888889999999999999999999999999999999999988
Q ss_pred HHhh
Q 009413 475 IEAL 478 (535)
Q Consensus 475 i~~~ 478 (535)
+.+.
T Consensus 410 l~~~ 413 (468)
T TIGR00788 410 LMET 413 (468)
T ss_pred HHHH
Confidence 8763
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=152.70 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=106.0
Q ss_pred cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHH
Q 009413 36 VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSL 115 (535)
Q Consensus 36 l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (535)
.+.+..-.|.+-+.|.+.+.+.++.+|.++||+ |||++++.+.+..++...+.+.+. |+..+..+|
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-------------~F~afv~aR 128 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-------------NFAAFVLAR 128 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 334556789999999999999999999999997 999999999999999888888887 887777889
Q ss_pred HHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 116 CLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 116 ~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
++.|+.-|- ...+.++++|..++ +.|+.+++.......+|.++||++++++..
T Consensus 129 ~l~Gi~kgn-l~v~rAiisdV~se-------------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 129 FLGGIFKGN-LSVIRAIISDVVSE-------------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HhhhhccCc-hHHHHHHHHhhcCh-------------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999998765 47778999999998 568999999999999999999999999977
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-15 Score=145.96 Aligned_cols=421 Identities=14% Similarity=0.040 Sum_probs=235.8
Q ss_pred HHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 009413 14 AGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTA 93 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~ 93 (535)
.+.+-...-...+.+.+-+...+|.+..+..++......+..+++-.+|.++|++ |||+.+....+...+..++...++
T Consensus 86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp 164 (528)
T KOG0253|consen 86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC
Confidence 3334444444556666777778999999999999999999999999999999995 999999998888888778888777
Q ss_pred ccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhh
Q 009413 94 FSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLG 173 (535)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~ 173 (535)
|+..+++.|.+.|+|.|+ .|...++-.|..|. .+ |..-.-.. ..+.+|.++.
T Consensus 165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~-------~~------r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS-------SH------RWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccC-------cC------CCcchhHH-HHHHHHHHHH
Confidence 999999999999999999 89999999999998 32 33333222 4567788877
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccC--CCCC
Q 009413 174 VTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLP--IDNS 251 (535)
Q Consensus 174 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 251 (535)
..+.=.....+||||..........+.....++.....+..--+++ ..++...+.+.++....+.+... ....
T Consensus 217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-----~~kAletL~kiArmNg~qlplgvl~~s~~ 291 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-----DYKALETLHKIARMNGKQLPLGVLESSAI 291 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-----hHHHHHHHHHHHHhcCCCCCcceeeeehh
Confidence 6665445677899987655443222222222222111111111222 22333444444443332222111 1110
Q ss_pred C--ccchhhccccccccccCCCCCcccccccCCCCCCcc-hhhhHHHhhHHhHHHHHHHHHH-------HhcCCCceeee
Q 009413 252 D--TVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHL-VKNAKVVLKLFPIWTMLLMFAV-------IFQQPATFFTK 321 (535)
Q Consensus 252 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~ 321 (535)
+ .++..-.+ +. ..+..++.+.+-.+.. .+-||+.+....+|+....-+. -.+|...-...
T Consensus 292 ~~~e~e~~~~~-~~---------~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~ 361 (528)
T KOG0253|consen 292 DRQEQEESDLD-DS---------KSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPL 361 (528)
T ss_pred hhhhhhhhchh-hh---------hhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcccc
Confidence 0 00000011 00 0011111111111111 3446666665555554332111 11111110000
Q ss_pred ----ecccccccCCCccccCccc----cccchhH-HHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHH
Q 009413 322 ----QGMTMKRNIGSNFKIPPAT----LQSAITV-SIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMI 392 (535)
Q Consensus 322 ----~~~~~~~~l~~~~~~~~~~----~~~~~~~-~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (535)
.....+....-........ +.+..-+ +.++. .+++++++|| +.|...+++.++..+
T Consensus 362 ~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt----~~iverlGRK-----------kTMal~l~~f~iflf 426 (528)
T KOG0253|consen 362 YNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLIT----GVIVERLGRK-----------KTMALSLILFGIFLF 426 (528)
T ss_pred chhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHH----HHHHHHhcch-----------hHHHHHHHHHHHHHH
Confidence 0001111000000000011 1111111 12222 3333333443 456666666666554
Q ss_pred HHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 393 IAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 472 (535)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~ 472 (535)
.+..- .......+..+..-+.....+...+.|..|.+|+..|+++.|+....+.+|+++.|++.
T Consensus 427 ll~~c----------------~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 427 LLTTC----------------KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HHHHh----------------cCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 44331 11112222333334444555677889999999999999999999999999999999988
Q ss_pred HHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009413 473 TVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTD 527 (535)
Q Consensus 473 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 527 (535)
...+ .+....-.+.+++++++++...++-.|+++|..
T Consensus 491 -~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 491 -MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred -HHhc-----------------cceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 4433 122334567788999999998888889988864
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-14 Score=153.58 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=121.9
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchHHHH-HHHHHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYSTIL-AFSFIYVVGLV 87 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~-~~~~~~~~~~~ 87 (535)
+..+..++.+..+..++..|+++.+|+++..+|.+....-+.-.+.-|+.|+++||. |||||-.+ .+.+.+.++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 344555677777778899999999999999999999999999999999999999972 69877544 56667777766
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
++...+..+. .. ....+.+.-++..++.........++.+|+.++ + ++|++..++...+.+
T Consensus 96 llf~~p~~s~-----~~--~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-------~-----~eRt~l~s~r~~~~~ 156 (460)
T PRK11462 96 LAYSTPDLSM-----NG--KMIYAAITYTLLTLLYTVVNIPYCALGGVITND-------P-----TQRISLQSWRFVLAT 156 (460)
T ss_pred HHHhCCCCCc-----ch--HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-------H-----HHHHHHHHHHHHHHH
Confidence 6664431100 00 234455555666777777777888999999877 2 579999999999999
Q ss_pred hhhhhhhhhhhhhccc-------cchhHHHHHHHHHHHHH
Q 009413 168 SGSLLGVTVMSYIQDT-------FGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~-------~gw~~~f~~~~~~~~~~ 200 (535)
+|..+++.+...+... .+|+....+.++..++.
T Consensus 157 iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 157 AGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 9888887776554332 24665554444433333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-14 Score=151.52 Aligned_cols=150 Identities=10% Similarity=-0.005 Sum_probs=117.8
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
+.....+++++|+|..+.+++.+... ....+++++|+++||+ |||++++.+.+++.++.++++++.... +.
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~-------i~ 117 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEV-------IE 117 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhccc-------cc
Confidence 34556788999999999999987743 4456777899999995 999999999999999999998872110 00
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhh-hhhhhhhhcccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLL-GVTVMSYIQDTF 184 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i-~~~~~~~l~~~~ 184 (535)
.+++.+++.|++.|+|.+...+.....+.++||+ +|+++.++...+..+|+.+ +++..+++. .
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~--------------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~ 181 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS--------------NRGAVVAIMKTFTGLGSAILGSIQLAFFS--D 181 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 1788999999999999999888888999999976 5899999999999999975 555555544 3
Q ss_pred chhHHHHHHHHHHHHH
Q 009413 185 GWVLGFAIPTIAMVTS 200 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~ 200 (535)
+|+..|++.++..++.
T Consensus 182 ~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 182 NTSAYFFFLMSFALVV 197 (591)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5777676665554443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=173.82 Aligned_cols=190 Identities=18% Similarity=0.155 Sum_probs=147.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+.+......+......+......+.++++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+..+.+++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHH
Confidence 4444444545566666667777788888999999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccc--------------------cccccC----------------cc--ccchHHHHHHHHHHHhcccCCc
Q 009413 85 GLVALTSTAFSW--------------------AWSTTN----------------KI--SSSSAFLFWSLCLISLGQGGYN 126 (535)
Q Consensus 85 ~~~~~~~~~~~~--------------------~~~~~~----------------~~--~~~~~~~~~~~~l~g~g~g~~~ 126 (535)
+.+++++.+... ..+..+ .. +..+..++++|+++|+|.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999888764110 000000 00 0135567899999999999999
Q ss_pred hhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcccc----------------------
Q 009413 127 PSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTF---------------------- 184 (535)
Q Consensus 127 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~---------------------- 184 (535)
+...+++.|.+|+ ++|+...++++.+..+|..+|+.+++++.+.+
T Consensus 191 ~~~~~~i~d~~~~-------------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiG 257 (633)
T TIGR00805 191 PLGISYIDDFAKS-------------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIG 257 (633)
T ss_pred hcCchhhhccCCc-------------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHH
Confidence 9999999999998 67899999999999999999999999876432
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcc
Q 009413 185 GWVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 185 gw~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
+|+..|++.+++.++..+.++...
T Consensus 258 aWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 258 AWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 277778877766555444444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=142.09 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=115.6
Q ss_pred hhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccccc
Q 009413 22 KGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTT 101 (535)
Q Consensus 22 ~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (535)
....-.+.+.+++.++++..|++.+...+..++.+++++.|++.+|+ |+|+.+++|+.+++++..+..-++...
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~~~----- 102 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAASSK----- 102 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhhhh-----
Confidence 34445677888999999999999999999999999999999999995 999999999999999988775333222
Q ss_pred CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc
Q 009413 102 NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~ 181 (535)
++..++.+.++.+.|.+......+.+++...++ +. -+.-.+..+....+|++++|.+++++.
T Consensus 103 -----~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-------~~------a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 103 -----SYGFFLVALFILASGIGLLETAANPYVTLLGKP-------ES------AAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred -----hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc-------hh------HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 788899999999999999999999999999888 32 233445556667899999999999876
Q ss_pred c
Q 009413 182 D 182 (535)
Q Consensus 182 ~ 182 (535)
.
T Consensus 165 l 165 (422)
T COG0738 165 L 165 (422)
T ss_pred H
Confidence 5
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=155.83 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=120.2
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
.....++.+++|-+ ....|+.+.+.++..+..++.|+++|. ||||.+++.+.++..+|.+.++.++
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 44557888899854 778899999999999999999999999 5999999999999999999999998
Q ss_pred cchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc
Q 009413 106 SSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 106 ~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g 185 (535)
|...++.+..+.|+|.|... .....++|..|. +.|.....+......+...++|.++..+..+.+
T Consensus 130 -~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~ 194 (599)
T PF06609_consen 130 -NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------------KWRGLGLAIASIPFIITTWISPLIAQLFAAHSG 194 (599)
T ss_pred -cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------------chhhhHhHHHHHHHHhhhcccHHHHHHhccCCC
Confidence 99999999999999977654 456668999987 456666655555444455566666666666678
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 009413 186 WVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 186 w~~~f~~~~~~~~~~~~~ 203 (535)
|||.|++..+...++++.
T Consensus 195 WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 195 WRWIFYIFIIWSGIALVL 212 (599)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 999999988876665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=154.11 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC-------CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVK-------MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILA 77 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~-------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~ 77 (535)
+.+.+.-...+..+...+.+....+.+-.-+.| +++...+.+..+..++..++|++.|+++||+ |||+++..
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~ 119 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGK 119 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhH
Confidence 333333334444455555444443333322222 4567778888888999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhh
Q 009413 78 FSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSL 157 (535)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~ 157 (535)
.++++.+++++++++...+ +.. +-..++.+.|++.|+|.|+-+|...+..+|..-. ++|+.
T Consensus 120 ~liImIi~t~~~~~s~~~~----~~~--~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-------------~~RGa 180 (538)
T KOG0252|consen 120 ELIIMIICSALSGLSVGTT----SPL--GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK-------------KTRGA 180 (538)
T ss_pred HHHHHHHHHHHhccCCCCC----CCc--chhhHHHHHHHHhhccccCCCcchHHHhhhhhhh-------------ccccc
Confidence 9999999998777664221 110 1567889999999999999999999999997665 56676
Q ss_pred hhhhhhh----Hhhhhhhhhhhhhhhhcc---------c--cchhHHHHHHHH
Q 009413 158 FFKWWYF----GVCSGSLLGVTVMSYIQD---------T--FGWVLGFAIPTI 195 (535)
Q Consensus 158 ~~~~~~~----~~~lg~~i~~~~~~~l~~---------~--~gw~~~f~~~~~ 195 (535)
..+.... +.-.|++++.++.+-... + .-||..|.+..+
T Consensus 181 ~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 181 FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 6665444 444444444444332211 1 128888776554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=134.60 Aligned_cols=365 Identities=13% Similarity=0.130 Sum_probs=228.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
+.++.+=.|-..-++ ..+..-+++++|+|.+.+|.+++...+...++.+++.+++.| +|-+|.+..++++.++|.++-
T Consensus 17 Ivlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR 94 (395)
T COG2807 17 IVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIR 94 (395)
T ss_pred HHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 444445555555444 334467788999999999999999999999999999999999 599999999999999998877
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
... +...++.+-.+.|.|.+......++.+-+.||+ +-+..++.|....++|
T Consensus 95 ~~~--------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------------~~~~mtglYs~sl~~~ 146 (395)
T COG2807 95 SLG--------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------------RVGLMTGLYSTSLGAG 146 (395)
T ss_pred hcc--------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------------chhhHHhHHHHHHHHH
Confidence 765 466788999999999999999999999999997 4588889999999999
Q ss_pred hhhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCC
Q 009413 170 SLLGVTVMSYIQDTF-GWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPI 248 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (535)
+.+++.+...+.++. |||..+..=+...+++++..+.-.. +++.+.... + .
T Consensus 147 aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~--r~~~~~~~~---~----------------~------- 198 (395)
T COG2807 147 AALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQAL--REQAASIAT---K----------------L------- 198 (395)
T ss_pred HHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccc---c----------------c-------
Confidence 999999988888877 7998876655555555444433322 111111110 0 0
Q ss_pred CCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhH-HhHHHHHHHHHHHhcCCCceeeeeccccc
Q 009413 249 DNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMK 327 (535)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
+ +..+.|. + +..+.. +.+-+-+..++..+.+.+..+.+++....
T Consensus 199 --~--~~~~vw~------------------------------~-~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~ 243 (395)
T COG2807 199 --V--SVRKVWR------------------------------S-PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAA 243 (395)
T ss_pred --c--ccccccc------------------------------C-chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHH
Confidence 0 0000111 1 111111 21223334556666666665554322111
Q ss_pred ccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009413 328 RNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQ 407 (535)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (535)
.. +. --.+..+......+..|.. .+|..+ . +........++.++++.+.+...
T Consensus 244 ~a-----G~-llsl~~l~~~~~~ll~P~l-------a~R~~n----~--r~~~~~~~~~~l~G~~G~~~~P~-------- 296 (395)
T COG2807 244 EA-----GS-LLSLMQLAQLPTALLIPLL-------ARRSKN----Q--RPLVVLALLLMLVGLVGLLLAPG-------- 296 (395)
T ss_pred Hh-----hh-HHHHHHHHHHHHHHHHHHH-------HHHhcc----c--chHHHHHHHHHHHHHHHHHHhhh--------
Confidence 10 00 0001111112222222222 233211 1 12334444455555544443211
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 009413 408 YSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVP-VRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRS 486 (535)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~ 486 (535)
+..++| .++.|+|.+..+|...++...-++ ++..+..+|+.+....+=..+||.+.|++.|.++
T Consensus 297 -----~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g------ 361 (395)
T COG2807 297 -----QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG------ 361 (395)
T ss_pred -----hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC------
Confidence 122223 478899999999887777666555 6677788888888888888999999999998653
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHh
Q 009413 487 WFSDDMKEARLDLYYWVLALASALSLLLYVML 518 (535)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (535)
++...+..++++.++..+.-+..
T Consensus 362 ---------sw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 362 ---------SWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHhhc
Confidence 33455555555555555444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=142.58 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=130.8
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHH
Q 009413 32 LTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFL 111 (535)
Q Consensus 32 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (535)
+.+++|+...+.+.+.++|.+++.++.+++|.|.||+ .-.+.+....++.++..++..... |.+.+
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~-------------s~~~~ 137 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH-------------SFPGL 137 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------hhHHH
Confidence 3467888889999999999999999999999999995 877777777777666665665566 89999
Q ss_pred HHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhh------ccccc
Q 009413 112 FWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYI------QDTFG 185 (535)
Q Consensus 112 ~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l------~~~~g 185 (535)
++.|++.|+.++..+|....+++.++.+ ++|+.-+++++...++|.++|..+...+ ....|
T Consensus 138 ialr~llGl~es~~wP~~~~~lg~wy~~-------------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 138 IALRFLLGLFESGGWPGVVAILGNWYGK-------------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhcCh-------------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 9999999999999999999999999998 6789999999999999999998888775 23468
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccc
Q 009413 186 WVLGFAIPTIAMVTSTAFFSFGSQIYRY 213 (535)
Q Consensus 186 w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 213 (535)
|||.|++.+++.+...++.++..|..|.
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999988777666666666655443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-12 Score=134.22 Aligned_cols=362 Identities=14% Similarity=0.128 Sum_probs=223.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchHH-HHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYST-ILAFSFIYVVG 85 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~-~~~~~~~~~~~ 85 (535)
=....+..++.+..+..++..|.++.+|+++..+|.+..+.=+.=++.-|+.|.+.||. |||+|- ++.+.+.+++.
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~ 96 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV 96 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence 34456667788888889999999999999999999999999999999999999999975 577665 55566778887
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
..++..++.... + ++....++.-.+.+++.........++.+++.++ + ++|.+..++-...
T Consensus 97 ~~l~F~~p~~~~-----~--~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d---------~---~ER~~l~s~R~~~ 157 (467)
T COG2211 97 AVLLFITPDFSM-----T--GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD---------P---QERASLTSWRMVF 157 (467)
T ss_pred HHHHHcCCCccc-----C--cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC---------H---HHHHHHHHHHHHH
Confidence 777777763210 0 1555666777888899888888888999998776 2 4689999999999
Q ss_pred hhhhhhhhhhhhhhhcc-------ccchhHHHHHHHHHHHHHHHHHHhccccccc-cCCCcccccchHHHHHHHHHHHHh
Q 009413 166 VCSGSLLGVTVMSYIQD-------TFGWVLGFAIPTIAMVTSTAFFSFGSQIYRY-KSDETLKCTVSLINIVQAIKAAAS 237 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 237 (535)
.++|..+...+.+++.. ..||+....+.++..++.++..+...++... .++.++..+++..+ .+..
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~---~~~~--- 231 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKD---SFLL--- 231 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHH---HHHH---
Confidence 99987777666655432 3467666555555444444444443322111 11111000000000 0000
Q ss_pred cccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCc
Q 009413 238 KLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPAT 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 317 (535)
....|.+...+...++.....-..+....
T Consensus 232 ---------------------------------------------------~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~ 260 (467)
T COG2211 232 ---------------------------------------------------IFKNRPLLLLLLMNLLLFIAFNIRGSIMV 260 (467)
T ss_pred ---------------------------------------------------HHccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 01111122222222222222222333333
Q ss_pred eeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009413 318 FFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397 (535)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 397 (535)
++.++..+.+ ...+...........++..++.- ++.+|++ +.+.+.++.++..++.+.+.+.
T Consensus 261 yy~~y~lg~~-------~l~~~~~~~~~~~~~l~~~~~~p----~L~~~~g-------kk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 261 YYVTYVLGDP-------ELFAYLLLLASGAGLLIGLILWP----RLVKKFG-------KKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred eeEEEEcCCh-------HHHHHHHHHHHHHHHHHHHHhHH----HHHHHhc-------hHHHHHHHHHHHHHHHHHHHhh
Confidence 3333321111 11111111111222222233332 2334433 3366788888888888777664
Q ss_pred HHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccc-------cchhHHHHHHHHHHHHHHHHHHHHH
Q 009413 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEV-------PVRMRTMGFALYTSVFGVGSFLSAL 470 (535)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~~~g~~~~~~~lg~~lg~~ 470 (535)
. ..+.+..++..++.++|.+...+..++.+.|.. ..|..|...|...+.+=+|..++..
T Consensus 323 ~--------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 323 P--------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred c--------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 2 234566666778888898888888888777654 3567788888888999999999999
Q ss_pred HHHHHHhhh
Q 009413 471 LITVIEALS 479 (535)
Q Consensus 471 ~~~~i~~~~ 479 (535)
+.+++....
T Consensus 389 ~~g~~L~~~ 397 (467)
T COG2211 389 IPGWILGAI 397 (467)
T ss_pred HHHHHHHHc
Confidence 999998744
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=138.31 Aligned_cols=411 Identities=12% Similarity=0.041 Sum_probs=215.9
Q ss_pred cchHHHHHHHHHHhh-hhhhhhHHHHHHHhhhhcC----------------------------CC-hhhHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKER-FAFKGVASNLVTYLTDVVK----------------------------MS-NSSAAKTVNSWCGF 53 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~yl~~~l~----------------------------~s-~~~~~~~~~~~~~~ 53 (535)
+|.++..++-.+.++ ++...+..++|.|+++... .+ .+..+...++..+.
T Consensus 3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~ 82 (477)
T PF11700_consen 3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL 82 (477)
T ss_pred hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 577777777777766 3555677888999986541 11 23345677777888
Q ss_pred HhhhhhhhHHhhhhcccchHHHHHHHH-HHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhh
Q 009413 54 TSMLPLVLAPLADSYWDRYSTILAFSF-IYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAF 132 (535)
Q Consensus 54 ~~~~~~~~G~laDr~~Grk~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 132 (535)
..+..|+.|-++|+- |+||-++.... +..++...+.+.. +. +++...+.-++..++.+.......++
T Consensus 83 ~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~-~~----------~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 83 QALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS-PG----------QWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC-cc----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999995 87776555544 4445555555553 11 34333444444456666777778899
Q ss_pred hhccCCCCCCCCCc-------------CCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc--------ccchhHHHH
Q 009413 133 GADQLDSDDELPTT-------------TDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD--------TFGWVLGFA 191 (535)
Q Consensus 133 i~~~~~~~~~~~~~-------------~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~--------~~gw~~~f~ 191 (535)
+.|..++++...+. ++..+..+|++..+.-....++|+++...+.-.+.. ...-|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 99998885441111 111111235788877777778888877666544321 122466666
Q ss_pred HHHHHHHHH-HHHHHhcccccc-ccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccC
Q 009413 192 IPTIAMVTS-TAFFSFGSQIYR-YKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKK 269 (535)
Q Consensus 192 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (535)
+.++--++. +..++..+++.+ +..+... +......+.+....++
T Consensus 231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~---~~~~~g~~~l~~t~k~------------------------------- 276 (477)
T PF11700_consen 231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGS---SYLRFGFKRLWRTFKE------------------------------- 276 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCcch---hHHHHHHHHHHHHHHH-------------------------------
Confidence 655543333 333333333322 1111111 1222222222222221
Q ss_pred CCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHH
Q 009413 270 LGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSI 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 349 (535)
.++.|.+.+++..+++..-........... ..... ++++...+..+. +..
T Consensus 277 -------------------~~~~~~~~~fLia~~l~~dg~~ti~~~~~i------~a~~~----lg~s~~~l~~~~-l~~ 326 (477)
T PF11700_consen 277 -------------------IRKLRQLFLFLIAYFLYSDGVNTIISFAGI------YATEV----LGMSTTQLIVFG-LVV 326 (477)
T ss_pred -------------------HHhChHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHh----cCcCHHHHHHHH-HHH
Confidence 111222333322222111111111111111 11111 122222211111 111
Q ss_pred HHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHH
Q 009413 350 ILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGIS 429 (535)
Q Consensus 350 ~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 429 (535)
.+.+.+...+...+-+|++.| +.+.+.++.++..+ ..+.+..-.... ..| ..+.+.+.+.-++.|+.
T Consensus 327 ~i~a~~Ga~~~g~l~~r~g~k-----~~~~l~~~l~~~~~-i~~~g~~G~~~~----~~g---~~~~~~f~~~a~~~G~~ 393 (477)
T PF11700_consen 327 QIVAIIGALLFGWLQDRFGPK-----TKRTLLISLILWII-IPLYGLFGFWPS----FFG---LKSPWEFWVLAVLIGLF 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHH-HHHHHHHHhhhc----ccC---cccHHHHHHHHHHHHHH
Confidence 122222223323333443221 11333333333322 222222100000 001 22334455666778999
Q ss_pred HHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHH
Q 009413 430 DIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASA 509 (535)
Q Consensus 430 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (535)
.+...+...++..+..|++..+...|++.+.....+.+||++.+.+.+.+++ ....+..+.++.+
T Consensus 394 ~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~r~g~~~l~~lf~ 458 (477)
T PF11700_consen 394 MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------QRYGFLFLLVLFL 458 (477)
T ss_pred hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------chhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986632 3344555556666
Q ss_pred HHHHHHHHh
Q 009413 510 LSLLLYVML 518 (535)
Q Consensus 510 ~~~i~~~~~ 518 (535)
++.++....
T Consensus 459 ~gl~ll~~v 467 (477)
T PF11700_consen 459 IGLILLFFV 467 (477)
T ss_pred HHHHHHhhc
Confidence 666555433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=139.33 Aligned_cols=178 Identities=9% Similarity=0.021 Sum_probs=128.6
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|.........++..+.+|++..++|.|+++.+|++..+.++......++..++.++.|+++||+ |||++++.+.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~ 327 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 34444444455666788999999999999988999998888888888889999999999999995 99999888776544
Q ss_pred HHHHHH-HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVAL-TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
++.+.+ ...... +...+++++++.+++.+...+....++.|.+|+ +.|+++.+..
T Consensus 328 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------------~~Rg~~~g~~ 383 (490)
T PRK10642 328 VLAIPAFILINSN-----------VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------------HIRYSALAAA 383 (490)
T ss_pred HHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------ccchHHHHHH
Confidence 433322 222110 456677888888887776667778888999998 6789999975
Q ss_pred hhHhhhhhhhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTF-GWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+....+++.++|.+.+++.+.. +|+.++++..+..++.++..++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 5555666788999999887654 4666655544444444444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=125.51 Aligned_cols=391 Identities=12% Similarity=0.129 Sum_probs=225.3
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
+||-...+..+...+.+..-|--..-+-.+.+.+.+++.++..++-+.|+.-..+.+.++|++.||.+|-|..-++-..+
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 55555555555555555555666666778888888998889999999999999999999999999998876543333344
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..+|.++.+.-...- +.|.+..+|++.|+|.--.....+.++..+|.. ++.+.+++.
T Consensus 120 v~~GqliFa~Ggi~~----------aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------------KELn~vfGl 176 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISH----------AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------------KELNFVFGL 176 (459)
T ss_pred HHHHHHHHHhchHHH----------HHHHHHhhheeeccCchhhhhhhcceeEEEecC-------------ccccchhhH
Confidence 445655554332211 889999999999998766667778899999888 678999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHH----------HHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHH
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLG----------FAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQA 231 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~----------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (535)
+.....+|+.+-..+++++.++.+--.+ ..+....+...+..... . -+.+++ +.+
T Consensus 177 qlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~-l-g~~D~r------------Aer- 241 (459)
T KOG4686|consen 177 QLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS-L-GLSDDR------------AER- 241 (459)
T ss_pred HHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-h-hhhhhH------------HHH-
Confidence 9999999999888888888766542110 00011111111110000 0 000000 000
Q ss_pred HHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhH-HHhhHHhHHHHHHHHHH
Q 009413 232 IKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAK-VVLKLFPIWTMLLMFAV 310 (535)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 310 (535)
+-+++. .+. + ++||- +.+.+.+ -.+....++...-+.|.
T Consensus 242 ----ilh~e~---------------g~~-----------G--------e~pkL--tdv~~f~ppfw~~~iicv~yyva~f 281 (459)
T KOG4686|consen 242 ----ILHLEE---------------GFL-----------G--------EEPKL--TDVNTFYPPFWVLVIICVLYYVAWF 281 (459)
T ss_pred ----HHhhhc---------------Ccc-----------c--------CCccc--ccccccCccHHHHHHHHHHHHHHHH
Confidence 000000 000 0 00000 0011111 01112222222222223
Q ss_pred HhcCCCceeeeecccccccCCCccccCccccccchh---HHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHH
Q 009413 311 IFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAIT---VSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLS 387 (535)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~ 387 (535)
.+......+. ... ++.++....+++. ....+..|+.+.+++++++++. .+..+-+..
T Consensus 282 PFi~lg~~fF------~~r----fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~----------wv~~a~~~t 341 (459)
T KOG4686|consen 282 PFITLGPMFF------QKR----FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW----------WVASACILT 341 (459)
T ss_pred HHhhhhHHHH------HHh----hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh----------hHHHHHHHH
Confidence 2222222111 112 3444444444433 4455666777777776665432 122222222
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 388 IIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFL 467 (535)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l 467 (535)
..+=..+.+ ..+.....+.++|++..+.....+-.+....|.+.-|++.|+.+..+++|-.+
T Consensus 342 l~~H~~l~F------------------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~ 403 (459)
T KOG4686|consen 342 LLGHSGLFF------------------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF 403 (459)
T ss_pred HHHhhhHHh------------------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence 222122222 11222346677788888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 009413 468 SALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520 (535)
Q Consensus 468 g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (535)
.+.+.+.+.+..++ + ...+.+|.....+++....+.+...+
T Consensus 404 i~Iiag~i~d~~g~-----y-------~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 404 IPIIAGFIADGDGS-----Y-------DNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HhhhhheeecCCCc-----h-------hhHHHHHHHHHHHHHHHHHHHhheec
Confidence 99999998872210 1 22555666666666666555554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=138.37 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=133.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.+|.+.+..++....++++..++|.|+++++|+|..++++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4577788888888888888889999999999999999999999999999999999999999995 999877665444443
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+....... +.....+.+++.|++..+..........|.+|+ +.|+++.++.+.
T Consensus 337 ~~~~~~~~~~~-----------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------------~~~g~a~gi~~~ 392 (467)
T PRK09556 337 IFTLGVYQHAT-----------SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------------KAIGVANGIKGT 392 (467)
T ss_pred HHHHHHHHhcC-----------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------------hhHHHHHHHHHH
Confidence 33222222110 455566777777754333333334566799888 678999999999
Q ss_pred Hhhh-hhhhhhhhhhhhcc------------ccchhHHHHHHHHHHHHHHHHHHh
Q 009413 165 GVCS-GSLLGVTVMSYIQD------------TFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 165 ~~~l-g~~i~~~~~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
..++ |..++|.+.|++.+ ..||+..|++..+..+++.+..+.
T Consensus 393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 8886 77999999999988 578999998876666665554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-12 Score=133.70 Aligned_cols=175 Identities=10% Similarity=0.045 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|..+......+.....++....++|.|+++++|++..+.+++.+...++..++.+++|+++||+ |||+.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 34444444444444455555667899999999999999999988887788888999999999995 99998877765555
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+......... +.+.+++.+++.+++.|...+....+..|.+|+ +|+++.+.++
T Consensus 294 ~~~~~~~~~~-------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~--------------~~g~~~~~~~ 346 (393)
T PRK15011 294 CFYAGMLMAH-------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG--------------QAGSATTLYT 346 (393)
T ss_pred HHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------CcchHHHHHH
Confidence 4444433333 566667778877777676666677778888776 3688999988
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
...++|..++|.++|++.++.||+..|.+..+..++++++.+.
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999899999998877766666555543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-12 Score=131.60 Aligned_cols=169 Identities=12% Similarity=0.079 Sum_probs=134.8
Q ss_pred HHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcc
Q 009413 15 GKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAF 94 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~ 94 (535)
.+..+++..+..+++.|+.+ .|. .+.++..+.+.++..++.++.|++.||+ ||||.+..+.++..++..+....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~- 300 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34455666677788888864 465 3456666777888889999999999995 999999988888888777766665
Q ss_pred cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhh
Q 009413 95 SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGV 174 (535)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 174 (535)
+.+.+++.+++.|++.+...|.......|.+|+ ++|+++.++++...++|..+++
T Consensus 301 ------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~~~~~~~g~~~~~ 355 (399)
T PRK05122 301 ------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------------QNRGAALGAYSVFLDLSLGITG 355 (399)
T ss_pred ------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888999999988888888888888887 6789999999999999999999
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccc
Q 009413 175 TVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRY 213 (535)
Q Consensus 175 ~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 213 (535)
.+.+++.++.||+..|++.+.+.+++++..+...++.++
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 356 PLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999998999999998877777766665555444333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.7e-12 Score=126.52 Aligned_cols=173 Identities=20% Similarity=0.209 Sum_probs=154.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchH-HHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYS-TILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-~~~~~~~~~~ 83 (535)
|.++...+..++....+.....+.+.|+.+.+|.+..+.++......++..++.++.|+++||+ |||+ .+..+.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4456677777888888888889999999988899999999999999999999999999999995 9999 9999999998
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+...... +.+..++..++.|++.+...+...+++.|..|+ ++|++..+..+
T Consensus 254 i~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 307 (352)
T cd06174 254 LGLLLLALAP-------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------------EARGTASGLFN 307 (352)
T ss_pred HHHHHHHHhc-------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------------HHHHHHHHHHH
Confidence 8888888776 778888999999999999999999999999997 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 204 (535)
...++|..++|.+.+++.+..+|+..|.+..+..+++.+..
T Consensus 308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999988999999998887766655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=139.06 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccC
Q 009413 45 KTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGG 124 (535)
Q Consensus 45 ~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 124 (535)
.......++..++.+++|+++|| +|||++++.+.++.+++.++.++.. +...+++.+++.+++.++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-------------s~~~ll~~~~l~g~~~~~ 664 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-------------SESAMIALLCLFGGLSIA 664 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-------------cHHHHHHHHHHHHHHHHH
Confidence 33445568889999999999999 5999999999999988888877776 666677778888887788
Q ss_pred CchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 009413 125 YNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 125 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 204 (535)
..+...++++|++|+ +.|++++++.+....+|+++||.+++++... +...+|++.+++.+++.++.
T Consensus 665 ~~~~~~a~~aEl~Pt-------------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~ 730 (742)
T TIGR01299 665 AWNALDVLTVELYPS-------------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA 730 (742)
T ss_pred HHHHHHHHHHHHcCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 888999999999998 6799999999999999999999999887653 45567777666655554444
Q ss_pred H
Q 009413 205 S 205 (535)
Q Consensus 205 ~ 205 (535)
+
T Consensus 731 ~ 731 (742)
T TIGR01299 731 L 731 (742)
T ss_pred H
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=128.07 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
.+.+....++..........+++.|+++++|.++.+.++...........+.+++|+++||+ |||+++..+.++..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY 279 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 34334444444444445556788999889999999999988877777788889999999995 99999888776655554
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
......+ +.+.+++.+++.|++.|...+....+..|..|+ +++++.+.++...
T Consensus 280 ~~~~~~~-------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 332 (375)
T TIGR00899 280 TGLAADN-------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--------------RAGAATTLYTNTG 332 (375)
T ss_pred HHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------------hhhHHHHHHHHHH
Confidence 4444444 666677788888888888778888888888765 3568899999999
Q ss_pred hhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 167 CSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
++|..++|.+++++.+..||+..|++.++..+++.+...
T Consensus 333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999989999999888777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=110.40 Aligned_cols=342 Identities=13% Similarity=0.094 Sum_probs=195.3
Q ss_pred hhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhccc-----chH-HHHHHHHHHHHHHHHHHhhcccccc-cccCccc
Q 009413 33 TDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD-----RYS-TILAFSFIYVVGLVALTSTAFSWAW-STTNKIS 105 (535)
Q Consensus 33 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 105 (535)
..+++++..-.+..+....+.+ ..++..|+.||+. + ||- -+..|.+++..+..+..++.....- ...+..+
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 3578888888888888877764 4689999999996 6 443 3556666666665555544322110 0000110
Q ss_pred cchH--HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccc
Q 009413 106 SSSA--FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDT 183 (535)
Q Consensus 106 ~~~~--~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~ 183 (535)
...+ .....-++.|+|.+....+..++++|..|+ ++|+++.++.+....+|.+++.++.+.+.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------------~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------------ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 0222 233444557888888888889999999998 6899999999999999999999999988887
Q ss_pred cchhHHH----HHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhc
Q 009413 184 FGWVLGF----AIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQ 259 (535)
Q Consensus 184 ~gw~~~f----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (535)
++..-.. ..+.+..++.++..+-..++.++..+.+++++.+..+..+.+.
T Consensus 152 ~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~-------------------------- 205 (403)
T PF03209_consen 152 FSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVW-------------------------- 205 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHH--------------------------
Confidence 7633222 2222222333333333222222222111111112221111110
Q ss_pred cccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCcc
Q 009413 260 EQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPA 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 339 (535)
. ..+.+++..++.+ ....+ +.|-. .. +-+...+ ++++.+
T Consensus 206 ~----------------------------~~~a~~f~~fl~l--~t~a~---~~QD~--iL---EPygg~V---fgmsv~ 244 (403)
T PF03209_consen 206 A----------------------------SPQARRFFVFLFL--GTLAF---FMQDV--IL---EPYGGEV---FGMSVG 244 (403)
T ss_pred h----------------------------CCChhHHHHHHHH--HHHHH---HhhHH--Hc---CCchhHH---cCCCHH
Confidence 0 0112222222211 11111 11111 01 0111111 233332
Q ss_pred ---ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchh
Q 009413 340 ---TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSI 416 (535)
Q Consensus 340 ---~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (535)
.++..-..+.+++..+.++...+ | ..+.+....|.....+++........ ..+.
T Consensus 245 eTT~Lta~~~~G~L~G~~~~g~~l~~---~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------~~~~ 301 (403)
T PF03209_consen 245 ETTRLTAFWGGGTLLGMLLAGFLLSR---R-------LGKKRTAALGCLLGALAFALIILAGP-------------LGSP 301 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---C-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------cccc
Confidence 23333445566666666554332 2 12222333444444444443333211 2245
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009413 417 FWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALS 479 (535)
Q Consensus 417 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~ 479 (535)
+.+-...++.|++.+.......+...+..+++..|..+|.+-..+.++..++.++++.+.|..
T Consensus 302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999998899999999999999999999999999999999999988854
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=130.10 Aligned_cols=170 Identities=13% Similarity=0.100 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.++.+.+..++....++.+..++|.|+++++|+|..+.+...+.+.++..++.++.|+++||+ |||+++.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4455666666677777788889999999999999999999999999999999999999999995 999998887766666
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
...+....+ +...+.+..++.|++.+...+...+...+..|+ .+++..+....
T Consensus 284 ~~~~~~~~~-------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--------------~~~~~~g~~~~ 336 (394)
T PRK03699 284 LMYLFVNTD-------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV--------------ASPKLVNFILT 336 (394)
T ss_pred HHHHHHHcC-------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------CCHHHHHHHHH
Confidence 555544444 555566667778887777778877777776654 23556677777
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 202 (535)
+.++|..++|.+.|++.+..|++..++...+..+++.+
T Consensus 337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 88999999999999999999999988876665555433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=127.61 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=134.7
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|..+.+....++..+.......+.+.|. +++|.+..+.+...+.+.++..+++++.|+++||+ |||+.+..+.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence 3445555555555555555666667775 46899999999999999999999999999999995 999999998888888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.++....+.. +...++...++.+++.|...+..++++.|.+|+ ++|++..+..+.
T Consensus 283 ~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~g~~~~ 338 (377)
T TIGR00890 283 GMAAMLFIPML-----------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-------------ANSAANYGFLYT 338 (377)
T ss_pred HHHHHHHcccc-----------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-------------hhhhhHhHHHHH
Confidence 87766655411 223344556778888888888888899999988 578999999999
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
..++|..++|.+.+++.+..||++.|.+.++..+++
T Consensus 339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999999999999998776655443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=130.28 Aligned_cols=178 Identities=11% Similarity=0.041 Sum_probs=135.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCC--------hhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMS--------NSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFS 79 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~ 79 (535)
+...+..++..........+++.|+++ .|.+ ..+.+...+...+...++.++.|+++|| +|||+++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 444455555555555555777888864 4543 3667889999999999999999999999 59999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++..++..+.......+. +.+.+++.+++.|++.+...+....+++|.+|+ ++|++..
T Consensus 289 ~~~~v~~~l~~~~~~~~~---------~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------------~~~g~~~ 346 (418)
T TIGR00889 289 VAWALRFGFFAYGDPEYF---------GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------------HIRASAQ 346 (418)
T ss_pred HHHHHHHHHHHHcCcchh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------------HHHHHHH
Confidence 988887666665321000 345667788999999888888889999999998 6799999
Q ss_pred hhhh-hHhhhhhhhhhhhhhhhccc------cchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 160 KWWY-FGVCSGSLLGVTVMSYIQDT------FGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 160 ~~~~-~~~~lg~~i~~~~~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
++.+ ....+|..+||.++|++.++ +||+..|.+.++..++..++.++..+
T Consensus 347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9997 56789999999999999876 46999998877766655554444443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=127.39 Aligned_cols=168 Identities=12% Similarity=0.067 Sum_probs=130.9
Q ss_pred HHHhhhhhhhhHHHHHHHhhhhcCCChh---hHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHH
Q 009413 14 AGKERFAFKGVASNLVTYLTDVVKMSNS---SAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALT 90 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~ 90 (535)
.++.......+.++++.|+.+..+.... ..+.+.....++..++.+..|+++||+ |||+++..+.++..++.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3444444455667788888765443221 245566666778888899999999995 999999998887777766666
Q ss_pred hhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhh
Q 009413 91 STAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGS 170 (535)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 170 (535)
..+ +.+.+++.+++.|++.+...|...+++.+..|+ ++|++.++.++...++|.
T Consensus 307 ~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~~~~~g~ 360 (408)
T PRK09874 307 FVQ-------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-------------QIAGRIFSYNQSFRDIGN 360 (408)
T ss_pred Hhc-------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-------------ccceeeehHHHHHHHHHH
Confidence 555 667778888999999999999988888887776 567999999999999999
Q ss_pred hhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Q 009413 171 LLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 171 ~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
.+||.++|++.+..||++.|++.++..+++.+..+...
T Consensus 361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777666554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=124.89 Aligned_cols=174 Identities=10% Similarity=-0.032 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
++......++.....++...++++|+++..|.|..+.+++.+...++..+++++.|+++||+ |||+.+ .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 34444455555566666677888999888999999999999999999999999999999995 988654 4444444443
Q ss_pred HHH-HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 87 VAL-TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
... .... +.+.+++..++.|++.+...+...+.+.+..|+ +|+++.+.++..
T Consensus 285 ~~l~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~g~~~~~ 337 (390)
T PRK03545 285 LLLLPAAN-------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD--------------ATDVAMALFSGI 337 (390)
T ss_pred HHHHHHhc-------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC--------------cHHHHHHHHHHH
Confidence 332 3333 666777788888988877777777888876554 468899999888
Q ss_pred hhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 166 VCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
.++|..+||.++|++.++.|++..|+..+...+++++..+...+
T Consensus 338 ~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 338 FNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999888777776666555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=122.96 Aligned_cols=181 Identities=18% Similarity=0.105 Sum_probs=145.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-cchHH-HHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-DRYST-ILAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~-~~~~~~~~ 82 (535)
|.+|.+++...+.-+.-|++..+.|.|++|..|+|..++++..+.|=.+...++++.||++||++ |||.. -++.++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999998 76654 44445555
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.+....++.. |.....+..+++|+..-+-.-.+.....|..|+ +.-|++.+..
T Consensus 332 ~~~~~~~w~~~~~-----------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------------~AaGtA~Gf~ 387 (448)
T COG2271 332 TASLVLYWLAPNG-----------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------------KAAGTATGFV 387 (448)
T ss_pred HHHHHHHHcCCCc-----------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------------hhccchhchh
Confidence 6666666666521 556777777777776555444555667787777 4568899988
Q ss_pred hhHhhh-hhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 163 YFGVCS-GSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 163 ~~~~~l-g~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
.++.-+ |...+-...+++.+++||...|.+..+..+++.+++....+
T Consensus 388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 888877 99999999999999999999998877777766666555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=125.15 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=136.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+..+.+.+..++....++++..++|.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.++.+..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 445666666677778888999999999985 899999999999999999999999999999994 999999888877777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.......+. +.... ..++.|++.+...|.......+.+++ + ++|++.++..+.
T Consensus 283 ~~~~~~~~~~------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~-------~-----~~~g~~~g~~~~ 336 (393)
T PRK09705 283 GFCGFIWLPL------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ-------P-----AIAGKLVAFMQG 336 (393)
T ss_pred HHHHHHHccc------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCC-------H-----HHHHHHHHHHHH
Confidence 6655443331 22222 22456788888888877777777754 1 468999999999
Q ss_pred Hhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhccc
Q 009413 165 GVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
..+++..++|.+.|++.++.| |...|.+.....+...++.....+
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999876 788888777666655555444444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-11 Score=128.21 Aligned_cols=182 Identities=12% Similarity=0.032 Sum_probs=130.4
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
++|....+....++..+.+|.+..+.+.|+++++|++......+.....+...++.++.|+++||+ ||||++..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 344444444566777888999999999999999999988766666666677788889999999995 9999988887665
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.+.+........ +...+++..++.+++.+...+..+++++|.+|. +.|+++.++.
T Consensus 327 ~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------------~~r~tg~g~~ 384 (438)
T PRK09952 327 TLSAFPFFMALEAQS---------IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-------------SYRYSGAGVG 384 (438)
T ss_pred HHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-------------chhHHHHhHH
Confidence 554433332210000 333444555666788777788889999999998 5678888874
Q ss_pred h-hHhhhhhhhhhhhhhhhcccc--chhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 Y-FGVCSGSLLGVTVMSYIQDTF--GWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~-~~~~lg~~i~~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
+ .+..+|+.++|.+++++.+.. +|+..+.+..+..+++.+..+..
T Consensus 385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4 445689999999999987643 48888877776666665555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=127.06 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=132.4
Q ss_pred hhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009413 21 FKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWST 100 (535)
Q Consensus 21 ~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (535)
..++..++|.|+++.+|.+..+.+++.+.+.++..++.++.++++||. ++++.+..+.++..++.++..+.+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 345667889999888999999999999999999999999999999994 888888888887777777666655
Q ss_pred cCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhh
Q 009413 101 TNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYI 180 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l 180 (535)
+.....++.++.|++.+...+...+++.|..|+ +.|+++.++++...++|..+||.++|++
T Consensus 311 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 311 ------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------------EMLGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------------HHHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 666677778888888877777778889999987 6799999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 181 QDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 181 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
.+..|++..+.+.+...++..++.....+
T Consensus 372 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 372 GAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888887766555444344333333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-12 Score=110.05 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=113.2
Q ss_pred HHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCch
Q 009413 48 NSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNP 127 (535)
Q Consensus 48 ~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~ 127 (535)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.+...... +.+.+.+.+++.|++.+...+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-------------NITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999995 999999999988888888777765 788888999999999999899
Q ss_pred hhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 128 SLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 128 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
...+++.|.+|+ ++|++..+..+...++|..++|.+.+++.+..+|++.|++.....++..+..+.
T Consensus 71 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 71 AGAALIADIYPP-------------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hHHHHHHHHCCh-------------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998 568999999999999999999999999998889999988877665555444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=124.77 Aligned_cols=169 Identities=14% Similarity=-0.043 Sum_probs=131.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
+....++....++.+..++|.|+++ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 3344445555667777888888874 799999999999999999999999999999995 99999888766666665555
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
.... +.+.+.+..++.|++.++..+...++..|.+|+ ++|++..++.+....+|
T Consensus 303 ~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~~~~~~g 356 (406)
T PRK11551 303 AAAP-------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-------------QVRGTGVGAAVAVGRLG 356 (406)
T ss_pred HhcC-------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch-------------hhhhhhhhHHHHhhhHH
Confidence 5554 555666667778887777788888999999998 67899999999999999
Q ss_pred hhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 009413 170 SLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 170 ~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 206 (535)
..++|.++|++.++.+ |...+++.....+++.++.+.
T Consensus 357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887654 566666555555554444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=129.82 Aligned_cols=163 Identities=7% Similarity=0.010 Sum_probs=128.1
Q ss_pred HhhhhhhhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 009413 16 KERFAFKGVASNLVTYLTDVV---KMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTST 92 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~ 92 (535)
+....+......++.|+.+.+ +.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++..+..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 234 GVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc
Confidence 333344444456777776543 56677889999999999999999999999995 99999999988888888877777
Q ss_pred cccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh-hhhHhhhhhh
Q 009413 93 AFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW-WYFGVCSGSL 171 (535)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~ 171 (535)
+ +++.+++.+++.+++.+...+....++.|.+|+ +.|++..+. +++..++|.+
T Consensus 313 ~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 313 T-------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV-------------RLSATIYLVGFQFAKQLGAV 366 (420)
T ss_pred c-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------------cceeeeeeehHHHHHHHHHH
Confidence 6 778888889999988877777777888998887 446666655 6677889999
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 172 LGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 172 i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
++|.++|++.+..||+..|.+.++..++..++.+
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987666555444433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=128.19 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhccc--chHHH-HHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD--RYSTI-LAFSFI 81 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rk~~~-~~~~~~ 81 (535)
+.++...+..++....++++..++|.|++++.|++..+++.....+.++..++.+++|+++|| ++ ||+.. .....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence 446666777777777788888999999998899999999999988889999999999999999 54 44332 222233
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..++.+........ +....++..++.|.+.....+....+..|.+|+ ++|+++.++
T Consensus 332 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~ 387 (452)
T PRK11273 332 VTIATIVYWLNPAG-----------NPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------------KAAGTAAGF 387 (452)
T ss_pred HHHHHHHHHHhccc-----------ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------------hhhhhHHHH
Confidence 33333332222110 333344444455543322223334567788888 578999999
Q ss_pred hhhHhhhhhh-hhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 162 WYFGVCSGSL-LGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 162 ~~~~~~lg~~-i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
.+...++|+. ++|.+.+++.++.||+..|++..+..+++++....
T Consensus 388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 9888888865 47999999999999999998877766665554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=110.18 Aligned_cols=345 Identities=14% Similarity=0.042 Sum_probs=181.8
Q ss_pred hHHHHHHHhhhhcCC---Ch----hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHH-HHHHHHHHHHHHhhccc
Q 009413 24 VASNLVTYLTDVVKM---SN----SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAF-SFIYVVGLVALTSTAFS 95 (535)
Q Consensus 24 ~~~~~~~yl~~~l~~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~-~~~~~~~~~~~~~~~~~ 95 (535)
++..+|+|+++..+- +. +-.+...+...+...+..|+.|.++|+. |+||-.+.. ..+-.+....+++.+..
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~~ 112 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPPG 112 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCCC
Confidence 446789999876654 32 3445666777788889999999999995 977655444 44455556666666531
Q ss_pred ccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhh
Q 009413 96 WAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 175 (535)
+ +++...+..++..++.........++..+..++ ++. ++..+.-+-...+|+.+.-+
T Consensus 113 -s---------~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k-------~~~------~riS~lg~~~gylgs~i~li 169 (438)
T COG2270 113 -S---------YLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK-------DNM------GRISGLGWALGYLGSVILLI 169 (438)
T ss_pred -c---------hHHHHHHHHHHHHHhcchhheehhhHhhhhcCc-------ccc------CcccccccccccccchHHHH
Confidence 1 555666667778888888888889999998887 322 33333333334444444433
Q ss_pred hhh---hhc---------------cccchhHHHHHHHHHHHHHHHHHHhccccccccC-CCcccccchHHHHHHHHHHHH
Q 009413 176 VMS---YIQ---------------DTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKS-DETLKCTVSLINIVQAIKAAA 236 (535)
Q Consensus 176 ~~~---~l~---------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 236 (535)
.+- ... +...-|..+.++++-.++..+=++...++.++.+ +... ...+..+.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~----~l~~g~k~L~~t~ 245 (438)
T COG2270 170 FVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPT----ALRNGFKELKSTF 245 (438)
T ss_pred HHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchH----HHHHHHHHHHHHH
Confidence 321 011 1222344554444322222222222222211111 1111 2333333222222
Q ss_pred hcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCC
Q 009413 237 SKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPA 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 316 (535)
++. ++++.+.+++.-.++. ....
T Consensus 246 k~i--------------------------------------------------~~~~~i~~FLiA~~~~-------~DGv 268 (438)
T COG2270 246 KEI--------------------------------------------------RGRKNLVLFLIARFFY-------IDGV 268 (438)
T ss_pred HHH--------------------------------------------------hcccchHHHHHHHHHH-------HhhH
Confidence 211 1112222222111111 0000
Q ss_pred ceeeeecc-cccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 009413 317 TFFTKQGM-TMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAA 395 (535)
Q Consensus 317 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 395 (535)
+.....+. .-... +++....+..+.... .+.+.+...+...+.+|+ +..+.+.+++++..+..+...
T Consensus 269 ~til~~~~~fg~~~----~gls~~~lll~g~~~-~vvA~lg~ii~g~Ld~rf-------g~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 269 NTILAMGGVFGAAD----LGLSSTELLLIGIAL-SVVAALGAIIAGFLDERF-------GSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHHHHHHH----cCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-------CCceeehHHHHHHHHHHHHHH
Confidence 00000000 00111 222222222111111 111222222222233443 333556677777666665544
Q ss_pred HHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 396 IVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVI 475 (535)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i 475 (535)
+.+ . ..-..+.-++.|.+.+......-++..+.+|++..++..|++++....++++||++.+.+
T Consensus 337 ~~~---------------~-~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~ 400 (438)
T COG2270 337 FLE---------------G-ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI 400 (438)
T ss_pred Hcc---------------c-cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence 431 1 122334445667888888999999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q 009413 476 EALSSS 481 (535)
Q Consensus 476 ~~~~~~ 481 (535)
.+++++
T Consensus 401 t~iTg~ 406 (438)
T COG2270 401 TQITGS 406 (438)
T ss_pred HHHhcc
Confidence 997743
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=125.22 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.++......++....++.+..+++.|+++++|.+..+.+.......++..++.++.|+++||+ |||+.++.+..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 298 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL 298 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 466677777788888888889999999989999999999999999999999999999999995 9999877555444333
Q ss_pred H-HH-HHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh-h
Q 009413 86 L-VA-LTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW-W 162 (535)
Q Consensus 86 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 162 (535)
. .. ....... +.+.+++..++.+++.+...+...+++.|.+|+ ++|+++.+. +
T Consensus 299 ~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~~~~ 354 (394)
T TIGR00883 299 AVPLLMALLDSG-----------SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT-------------EVRYTGASLAY 354 (394)
T ss_pred HHHHHHHHhcCC-----------chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc-------------cceeeEeeehh
Confidence 2 22 2222110 555666777888888888889999999999998 567888887 4
Q ss_pred hhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIA 196 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~ 196 (535)
+.+..+|..++|.+++++.++.| |+..++.....
T Consensus 355 ~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 355 NLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 55567899999999999999888 88766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=127.52 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=136.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc-ccchHHHHHHH--HH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY-WDRYSTILAFS--FI 81 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grk~~~~~~~--~~ 81 (535)
|.++......++..+.++....+++.|++ ++|++..++++..+...++..++++++|+++||. +++|+....+. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 44566666677777888888889999986 4799999999999999999999999999999983 13344333332 33
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..++.+++.... +.+.+++.+++.|++.+...+...+++.|.+|+ +++++..+.
T Consensus 320 ~~l~~ll~~~~~-------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------------~~~g~~~g~ 373 (455)
T TIGR00892 320 NGLTHLLCALAG-------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------------QRFSSAVGL 373 (455)
T ss_pred HHHHHHHHHHhc-------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------------HHHhhHHhH
Confidence 333334444444 777888889999999999999999999999988 678999999
Q ss_pred hhhHhhhhhhhhhhhhhhhcccc-chhHHHHHHHHHHHHHHHH
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTF-GWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~ 203 (535)
++...++|..+||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999999998877 4999999887766655443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=124.06 Aligned_cols=184 Identities=12% Similarity=0.076 Sum_probs=136.0
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccc-hHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTD-VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDR-YSTILAFS 79 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~~~~~~ 79 (535)
-+||++++..+..+.....+..+.+..-+|+++ |.+-+.+..|+++++..++..++.+..|+-+.|. |+ |+-++.+.
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ 109 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSF 109 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHH
Confidence 378999999999999999999888889999985 5778888999999999999999999999999995 85 77778888
Q ss_pred HHHHHHHHHH-HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 80 FIYVVGLVAL-TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
++.++|.++. .+...+.. ..+.++++|++.|+|.|. ....-+++++.... +.|.++
T Consensus 110 ii~~~g~llY~~l~~~~~~---------~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~-------------~dR~rA 166 (488)
T KOG2325|consen 110 LIAIIGNLLYLALAYVPNG---------VKYLMLVARILTGVGVGN-FAVLRAYIADASTV-------------EDRPRA 166 (488)
T ss_pred HHHHHHHHHHHHHHhcccc---------hHHHHHHHHHHcCcCccc-HHHHHHHHHhccCc-------------cchHHH
Confidence 8899998888 44332211 567889999999998765 45667888886555 357788
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhc----cc---------cchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQ----DT---------FGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~----~~---------~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
++....+..+|.++||.+...+. +. .-+..+-|+..++.++..+.+++..+
T Consensus 167 ~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 167 FAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 87777666677777766654432 11 11334555555555555555444444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=127.11 Aligned_cols=148 Identities=13% Similarity=0.015 Sum_probs=114.5
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 23 GVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 23 ~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
.+..++|.|+++++|++..+++++.+...++..++.+++|+++|| +|||+++..+.++..++.+........
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~------- 364 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGGA------- 364 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcccc-------
Confidence 456789999988999999999999999999999999999999999 599999888776665554433332210
Q ss_pred ccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 103 KISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+.+...+..++.+....+..+..++++.|.+|+ ++|++.+++++...++|..+||.++|++.+
T Consensus 365 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 365 ----NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------------EQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred ----HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------------HHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 333343444444333333456777888999988 678999999999999999999999999999
Q ss_pred ccchhHHHHHHHH
Q 009413 183 TFGWVLGFAIPTI 195 (535)
Q Consensus 183 ~~gw~~~f~~~~~ 195 (535)
.+||+..+.....
T Consensus 428 ~~g~~~~~~~~~~ 440 (496)
T PRK03893 428 RLDLGTALASLSF 440 (496)
T ss_pred cCChHHHHHHHHH
Confidence 9999877755443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=120.64 Aligned_cols=175 Identities=14% Similarity=-0.019 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchH--HHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYS--TILAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~--~~~~~~~~~ 82 (535)
|.++...+..++....+..+..+++.|+++++|.|..+.+++.....++..++.+++|+++||+ |||+ ...... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~-~~ 292 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARK-TA 292 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHH-HH
Confidence 4566777778888888888889999999999999999999999999999999999999999995 9986 211111 11
Q ss_pred HHH---HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 83 VVG---LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
.++ ............ +....+....+.+.+.+ ..+...++++|.+|+ ++|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~g~~~ 349 (399)
T TIGR00893 293 IIAGLVLSLLMFATNYVN---------IPYAALALVALGFFGLG-AGAIGWALISDNAPG-------------NIAGLTG 349 (399)
T ss_pred HHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------------hHHHHHH
Confidence 111 111111110000 22333333333344444 778999999999998 6789999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHH
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~ 204 (535)
++.+...++|..++|.+.+++.+..| |+..|.+.++..+++.+..
T Consensus 350 ~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 350 GLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 9998888776666554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=121.70 Aligned_cols=169 Identities=9% Similarity=-0.020 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++......++...+.....++.++|++ ++|.+..+.|...+...++..+..++.+++.||+ |+|+++..+.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 45666777777778888888899999997 4999999999999998999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh-
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY- 163 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 163 (535)
.....++.+ +.+.++...+++|+..|...+....++.+. |+ ++|++..+.++
T Consensus 283 ~~~~~~~~~-------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-------------~~~~~~q~~~~~ 335 (382)
T TIGR00902 283 RWAIIGAIE-------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-------------SEIAKLQALYNA 335 (382)
T ss_pred HHHHHHhHh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-------------hhHHHHHHHHHH
Confidence 988888776 888889999999999999999999999987 76 45788888876
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
....+|..++|.++|++.++.|+ ..|.+.+...++++++
T Consensus 336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 46689999999999999999887 4566655555555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=124.13 Aligned_cols=178 Identities=12% Similarity=0.014 Sum_probs=120.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-cchHHH-HHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-DRYSTI-LAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~~-~~~~~~~ 82 (535)
+.++.+.+..++....++++..++|.|+++++|+|..+++...+.+.++..++.+++|+++||+. ++|+.. ....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 34566666666666777778889999998889999999999999999999999999999999941 222222 2221122
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.......... +.....+..+..|++..+.........+|.+|+ ++|+++.++.
T Consensus 323 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~ 378 (434)
T PRK11663 323 LLSVGSLWLMPFA-----------SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------------EAAGAATGFV 378 (434)
T ss_pred HHHHHHHHHcccc-----------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------------hhHHhHHHHH
Confidence 2222211111110 322232333334433222122234566787776 5789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+...++|..++|.+.+++.++.||+..|+..++..+++.+..+.
T Consensus 379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766665544443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=123.08 Aligned_cols=161 Identities=12% Similarity=0.111 Sum_probs=130.7
Q ss_pred HhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccc
Q 009413 16 KERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFS 95 (535)
Q Consensus 16 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~ 95 (535)
+....+..+..+.+.|+++ .+++ +.+.....+.++..+++++.|++.|| +||||.+..+..+..++.++....+
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-- 300 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-- 300 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc--
Confidence 3345555666778888864 4654 34566667778888999999999999 5999999999888888877766655
Q ss_pred ccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhh
Q 009413 96 WAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 175 (535)
+.+..++..++.|++.+...|...+...|.+|+ ++|+++.++++...++|..++|.
T Consensus 301 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 301 -----------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------------QVRGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred -----------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888899999888888888888998887 67999999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 176 ~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+.+++.++.||+..|.+.+.+.+++.+..+.
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 357 LAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888777666555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-10 Score=113.04 Aligned_cols=133 Identities=10% Similarity=0.035 Sum_probs=99.0
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKIS 105 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (535)
.....|..+.++ +...+-|...+|.+.+....+++-|+.|| +|=|.+.+++..+..+|..+-..+..+.. ++
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v--~~---- 136 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFV--PP---- 136 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccc--cc----
Confidence 334556666666 77888899999999999999999999999 59999999999999999887777654410 00
Q ss_pred cchH--HHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhh
Q 009413 106 SSSA--FLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYI 180 (535)
Q Consensus 106 ~~~~--~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l 180 (535)
.++ ..+.+..+.+..+-.......-+.+-+||+ ++|..+...-.++..+|..+|..+...+
T Consensus 137 -~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~-------------~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 137 -LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP-------------DQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred -cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc-------------chhhhhhhHHHhcchHHHHHHhhcccee
Confidence 444 566777777777666666656777888998 5788888887777667666665554444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=119.55 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=120.3
Q ss_pred hhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 17 ERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSW 96 (535)
Q Consensus 17 ~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 96 (535)
..+.+.....++|.|+++ .|.+..+.++..+...++..+++++.|+++||+ |||+++..+..+..++..... .
T Consensus 212 ~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~--- 284 (381)
T PRK03633 212 SGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S--- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h---
Confidence 334444455678888875 699999999999999999999999999999995 999999888777776654432 1
Q ss_pred cccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhh
Q 009413 97 AWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTV 176 (535)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~ 176 (535)
.. .....+++.|++.+...|...+.+.|..|+ ++++...+.++...++|..+||.+
T Consensus 285 ----------~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~lG~~igp~~ 340 (381)
T PRK03633 285 ----------QA-AMAPALFILGAAGFTLYPVAMAWACEKVEH-------------HELVAMNQALLLSYTVGSLLGPSF 340 (381)
T ss_pred ----------hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 233456667776667788888888998876 445667777778889999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHH
Q 009413 177 MSYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 177 ~~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
+|++.++.+|++.|.+.+...++....
T Consensus 341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 341 TAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999998877666554433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=120.29 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=130.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHH-HHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL-AFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-~~~~~~~ 83 (535)
|.++...+..++....+++...+.|.|++ ++|+|..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 45666777778888888999999999985 5899999999999999999999999999999995 9988764 3333333
Q ss_pred HHHHHHHhhcc-cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVALTSTAF-SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
++.+.+...+. ... +.+..++..++.|++.+...+. .....|..| ++|+++.++.
T Consensus 300 ~~~~~l~~~~~~~~~---------~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~--------------~~~g~~~g~~ 355 (402)
T TIGR00897 300 IFTLALYYIPQHFGH---------SFAVALIIAIALGIFLAGYVPL-AAVFPTLAP--------------KHKGAAMSVL 355 (402)
T ss_pred HHHHHHHHHHHccCC---------cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc--------------chhHHHHHHH
Confidence 33333222110 000 4555667777788877765443 455566433 3589999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+...++|..++|.+++++.+..||...|++.++..+++.++.++
T Consensus 356 ~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 356 NLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=121.56 Aligned_cols=156 Identities=15% Similarity=0.062 Sum_probs=122.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHH-
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVA- 88 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~- 88 (535)
......+.......+..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 321 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV 321 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence 33444444555556677889999999999999999999999999999999999999995 9999988877655333222
Q ss_pred HHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhh
Q 009413 89 LTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCS 168 (535)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 168 (535)
..... +.+.+.+..++.++..++..+..++++.|.+|+ ++|+++.+..+...++
T Consensus 322 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 322 FAIGA-------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT-------------DQRAAGLGFTYQLGNL 375 (405)
T ss_pred HHhCC-------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-------------chhHHHhhHHHHHHHH
Confidence 22222 455555666667766667778888999999988 6789999999999999
Q ss_pred hhhhhhhhhhhhccccc-hhHHHHH
Q 009413 169 GSLLGVTVMSYIQDTFG-WVLGFAI 192 (535)
Q Consensus 169 g~~i~~~~~~~l~~~~g-w~~~f~~ 192 (535)
|..++|.+.|++.++.| |+..+..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999888 8766543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=109.33 Aligned_cols=77 Identities=5% Similarity=-0.141 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccc---
Q 009413 107 SSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDT--- 183 (535)
Q Consensus 107 ~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~--- 183 (535)
+++.++++.++.|.|.+...+..+.++++.-|+ +++++..++.+.+..+|..++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~-------------~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~ 75 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPI-------------ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAG 75 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc-------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 788999999999999999999999999999887 4578889999999999999999999987631
Q ss_pred -------------cchhHHHHHHHHH
Q 009413 184 -------------FGWVLGFAIPTIA 196 (535)
Q Consensus 184 -------------~gw~~~f~~~~~~ 196 (535)
.+|+++|++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~yl~ia~~ 101 (310)
T TIGR01272 76 DLSMQVATANAEAAKVHTPYLLLAGA 101 (310)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3688888855444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=121.48 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHH-HHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVN-SWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.+.+....++.....+....+.++|+.+++|+|..+.++... ...++..++.+++|+++||+ ||||.+..+.++..++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444444445555666666678889988889999999999985 44578999999999999995 9999877666554444
Q ss_pred HHHHHh-hcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 86 LVALTS-TAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
.+.... ....+ +...+.+..++..+..|...+...++..+..++ +.+++.++..+.
T Consensus 303 ~l~~~~l~~~~~----------~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-------------~~~~t~~gl~~s 359 (491)
T PRK11010 303 NAGYWLLSITDK----------NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-------------SFSATQFALLSA 359 (491)
T ss_pred HHHHHHHHhccc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCcHHHHHHHHH
Confidence 332221 11001 444444455554544455556677888888887 445778888888
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
..++|..+++.++|++.+..||+..|.+..++.+.+++.....++
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999988889999999999999998888877777666655544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=119.23 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=109.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH-HH
Q 009413 11 IVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV-AL 89 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~-~~ 89 (535)
+...++....++.+..+.|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||++++.+.++..+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3444556677888889999999988999999999988888899999999999999995 999988776544432221 11
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh-hh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV-CS 168 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~l 168 (535)
......+ +........++.+++.+...+....++.|.+|+ ++|++..++.+... .+
T Consensus 323 ~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-------------~~rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 323 SWLVAAP----------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-------------EVRTAGFSLAYSLATAI 379 (434)
T ss_pred HHHHcCC----------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-------------CccchheeHHHHHHHHH
Confidence 1111100 333333444555666666667777889999998 56888888854444 44
Q ss_pred hhhhhhhhhhhhccccchh
Q 009413 169 GSLLGVTVMSYIQDTFGWV 187 (535)
Q Consensus 169 g~~i~~~~~~~l~~~~gw~ 187 (535)
++.++|.+.+++.++.|++
T Consensus 380 ~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 380 FGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HhhhHHHHHHHHHHhcCCc
Confidence 5778999999998888853
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-10 Score=118.29 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=149.4
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccch--HHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRY--STILAFSF 80 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~ 80 (535)
+-|.+..-++..++-+-+...+......|.++++|+|..+...+.....+...++.++.|++.|| +|.| ++++.+++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 44666777777788888999999999999999999999999999999999999999999999999 5999 89888887
Q ss_pred HHHHHHHHHHh--hcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 81 IYVVGLVALTS--TAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
++.+..+...+ ..... + ..+.+.+.+.-++.|+..|+..+..-++.++..|+ ++.+..
T Consensus 358 ~~~~i~~~g~~G~~~~~~-----g--~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-------------g~e~ef 417 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFF-----G--LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-------------GREAEF 417 (477)
T ss_pred HHHHHHHHHHHHhhhccc-----C--cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-------------chhhHH
Confidence 77443332222 11000 0 00677888888999999999999999999999999 556999
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 206 (535)
++.+.+..-..+.+||.+.+.+.+..| -|..+....++.++++++++.
T Consensus 418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988876 788887777766666666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-10 Score=118.67 Aligned_cols=169 Identities=14% Similarity=0.030 Sum_probs=109.5
Q ss_pred HHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHh-h
Q 009413 14 AGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTS-T 92 (535)
Q Consensus 14 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~-~ 92 (535)
..+....+|.+..++|.|+++++|.+..+.+...+...++..++.++.|+++||+ |||+++..+.++..+....... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344778888999999999988999999999888888888888899999999995 9999887765544333322211 1
Q ss_pred cccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhh-hhh
Q 009413 93 AFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCS-GSL 171 (535)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~ 171 (535)
.... +....+....+...+.+...+....+.+|.+|+ +.|+++.++.+...++ ++.
T Consensus 331 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-------------~~r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 331 QNVS----------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-------------QVRALGVGLSYAVANALFGG 387 (432)
T ss_pred HcCC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CccchhhhHHHHHHHHHHHh
Confidence 1000 222222222222223333345567889999998 6789999997765554 344
Q ss_pred hhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 172 LGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 172 i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
..|.+.+.+..+..|...++..++..+++.+..+.
T Consensus 388 ~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 388 SAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 57787776643323655666555555555444444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=111.43 Aligned_cols=179 Identities=15% Similarity=0.069 Sum_probs=146.4
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
++.++......++..-+.|...+++.+++++.-|+|.+..+++...|.++..++..++|+++|| +.|+++.....+..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3457778888888889999999999999999999999999999999999999999999999999 78888888877777
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+....+.+... +.+..++..++.|+..+........-.++..|+ .++.+.+.+.
T Consensus 288 ~~~l~l~~~~~------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~--------------~~~~a~sl~~ 341 (394)
T COG2814 288 LALLALTFTGA------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD--------------AADLAGSLNV 341 (394)
T ss_pred HHHHHHHHhcc------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC--------------chHHHHHHHH
Confidence 77666655542 555566666667777666555555556664444 4688889999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQI 210 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 210 (535)
...|+|..+|..++|.+.+++|+....+..++..++++++.+...++
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998888887776665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=119.07 Aligned_cols=171 Identities=11% Similarity=0.015 Sum_probs=117.9
Q ss_pred hhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccc
Q 009413 21 FKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWST 100 (535)
Q Consensus 21 ~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (535)
...+..+. +++.+++|++..+.++......++..++.+++|+++||+ |||+.+..+.++..++.++..+.........
T Consensus 300 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 300 INAIMYYS-PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred CeehHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 33344444 444457899998889999999999999999999999995 9999999888887777666653211110000
Q ss_pred cCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhh
Q 009413 101 TNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYI 180 (535)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l 180 (535)
.... +...+....++.+....+..+....+..|.+|+ ++|+++.+..+...++|.+++|.+.+++
T Consensus 378 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 378 SKSS--GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------------SLRPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred ccch--hHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 111222222222222223346667788999998 6789999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcc
Q 009413 181 QDTFGWVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 181 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
.++.+|++.|++.+.+.+++.++.+...
T Consensus 443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 443 LESIGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHhcCccceehhHHHHHHHHHHHHheec
Confidence 8888999998887766665555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-10 Score=111.34 Aligned_cols=186 Identities=12% Similarity=-0.040 Sum_probs=145.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|..|.+++.-+...=++-++..+++.|++++++.|+.+++.....+.+...+.++.+|+|+||+ |.+|+.+.....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46688888888888778888899999999999999999999999999999999999999999995 99999999888888
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++..+.......... +.+...++..-+..++..|.-..+...++...+|+ +-+.+.++..
T Consensus 296 ~~~~~l~~~~~~~~~------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~--------------~~G~v~G~vg 355 (417)
T COG2223 296 LAAALLSLFLTGFGH------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK--------------ETGAVTGIVG 355 (417)
T ss_pred HHHHHHHcccccccc------CcchHHHHHHHHHHHHHhccCcchheeechHHHHh--------------hhhHHHHHHH
Confidence 887777665421100 00344444444444555555555677777777775 3588899999
Q ss_pred hHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGSQI 210 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~ 210 (535)
.+.++|+..-|...+...+..| ++..|++.....+++.++.+....+
T Consensus 356 a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888888887777 9999998888777777666555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-10 Score=118.47 Aligned_cols=174 Identities=12% Similarity=-0.017 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccch-----HHHH--HH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRY-----STIL--AF 78 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-----~~~~--~~ 78 (535)
.+|.+.+..++.....+.+..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+ ||| |... ..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence 345555544444455566677889999988999999999999999999999999999999995 876 2222 22
Q ss_pred HHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 79 SFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
.++..++.++..... +.+...+..++.+++.+...+...+++.+..| +.|+.+
T Consensus 332 ~~l~~i~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~ 384 (476)
T PLN00028 332 QTLGGVFCIWLGRAN-------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------------RSLGVI 384 (476)
T ss_pred HHHHHHHHHHhcccc-------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------------hhchhh
Confidence 222222222222222 44444444455555544444445555555433 257888
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
.++.+.+.++|+.++|.+.+ ...+.+|+..|++.+++.+++.++.++.+
T Consensus 385 ~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 385 SGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88877777777777766543 22345699999888777776666655554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=116.54 Aligned_cols=158 Identities=11% Similarity=0.003 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+...+...++..+++.......|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455666666777777666556777888878999999999999988888888989999999995 999999988887777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+..+..... +.+.+.+..++.|++.+...+....+..+..|+ +.++..++..++
T Consensus 340 ~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~ 396 (471)
T PRK10504 340 VSLLFMLVALLG----------WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-------------NLASSGNSLLSM 396 (471)
T ss_pred HHHHHHhccccc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------------HhccchHHHHHH
Confidence 766555433111 333444556777888888888888999998887 567999999999
Q ss_pred Hhhhhhhhhhhhhhhhccccch
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw 186 (535)
...+|..+|+.+++.+.+..|+
T Consensus 397 ~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 397 IMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988666554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-08 Score=105.39 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=113.7
Q ss_pred HHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc--cc-chH-HHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 27 NLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY--WD-RYS-TILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 27 ~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G-rk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
....|+++++|+|+++.....+...+- -..-++.|.++|.+ +| ||| =++++.++.+++...++..+....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~----- 84 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES----- 84 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 345788999999999988877665554 35567779999986 23 444 455555555455555554432111
Q ss_pred ccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 103 KISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+.....+..++..+|....-...-+++.|.... +. ..|+...+..+....+|.+++..++|++.+
T Consensus 85 ----s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~-------~p----~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 85 ----SAAIAVVLLFLASFGYAFADVAADALVVELARR-------EP----ESRGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-------CC----chhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 444555666777788888778888899998655 22 237888888888999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 183 TFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 183 ~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
..+++..|.+..+..++..+..++..+
T Consensus 150 ~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 150 SFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred cCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999998877665555444444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-10 Score=113.69 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=128.4
Q ss_pred chHHHHHHHHHHhhhhhhhhH-HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVA-SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|.++......++....+.... ...|.|.++.+|.+..+.+.......++..++.++.|++.||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 445556666666666666666 6677777777999999999999999999999999999999995 99999888877777
Q ss_pred HHHHHHHhhcccccccccCccccc-hHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSS-SAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
++.....+.. + .+.+++..++.|++.+...+...+++.|.+|+ ++|++..+..
T Consensus 289 ~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~ 342 (365)
T TIGR00900 289 LAILVVGLTP-------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------------ELLGRVFGAQ 342 (365)
T ss_pred HHHHHHHhhc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------HHHHHHHHHH
Confidence 7766666554 3 66777888899999999999999999999998 6799999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g 185 (535)
+...++|..++|.++|++.+..|
T Consensus 343 ~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 343 FSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999877643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-09 Score=110.75 Aligned_cols=173 Identities=14% Similarity=-0.061 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++...+...+....++......|.|+.+++|+++.+.++......++..++.++.|+++||+ |||+.+..+.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3455555555555555556666678888888999999999888888888889999999999995 999999988887777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+......... .+...++++.++.|+|.+...+......... ++ ++|++..+..++
T Consensus 294 g~~~~~~~~~~~~--------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~-------------~~~g~~~~~~~~ 351 (406)
T PRK15402 294 GLLLAALATVISS--------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD-------------VSKGTVSAAMGM 351 (406)
T ss_pred HHHHHHHHHHccc--------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc-------------ccccHHHHHHHH
Confidence 7766654321100 0455667788888998887776665554332 22 357999999999
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
...+|..+|+.+++++.+..++....+...+..++.
T Consensus 352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999988777665544444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=114.24 Aligned_cols=163 Identities=9% Similarity=-0.017 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhh-hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHH-HHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTD-VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYST-ILAFSFIYV 83 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~ 83 (535)
.++......++....++++..++|.|+++ ..+.+..+++.......++..++.+++|+++||+ +||+. +....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 45667777788888899999999999986 3577888999999999999999999999999995 87774 333333333
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++..+..... +.....++.++.++|.....+.......|.+|+ ++|+.+.++.+
T Consensus 322 ~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~a~g~~~ 375 (412)
T TIGR02332 322 AGWLLASATD-------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------------QARAIAIAVIN 375 (412)
T ss_pred HHHHHHHhcC-------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------------HHHHHHHHHHH
Confidence 3332222111 222222222233333322233334444566666 57999999999
Q ss_pred hHhhhhhhhhhhhhhhhccccc-hhHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTI 195 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~ 195 (535)
...++|..++|.+.+.+.+..| |++.|++..+
T Consensus 376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 9999999999999999998775 9988876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=111.41 Aligned_cols=164 Identities=9% Similarity=0.001 Sum_probs=128.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++...+..++....+....++++.|++ +.|.+..+.|...+...++..+..++.|++.|| +|+|+++..+.++..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 44565566666666666677788899996 589999999999998888889999999999999 5999999999888888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh-
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY- 163 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 163 (535)
+.++....+ +.+.+++..++.|++.+...+....+..+. ++ .++++..+.+.
T Consensus 283 ~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~ 335 (382)
T PRK11128 283 RWGLMGSTT-------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------------SEVIRLQALYSA 335 (382)
T ss_pred HHHHHHhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------------hhhHHHHHHHHH
Confidence 877776665 778888899999999888888888877775 33 23567777765
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMV 198 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~ 198 (535)
....+|..+||.++|++.+..|+. .|+..++..+
T Consensus 336 ~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~ 369 (382)
T PRK11128 336 LAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHH
Confidence 455778899999999999998874 4554444333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=111.12 Aligned_cols=173 Identities=10% Similarity=-0.019 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
.+...+..++.....+....++++|+.+..|.|+.+.+...+...++..++.++.|++.||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 44444444444455555566778899888999999999999999999999999999999995 99999988888777776
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
++...... +.+...+..++.++|.++..+.......+..++ . +.++.. ..+...
T Consensus 280 ~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~-----~~~~~~--~~~~~~ 333 (382)
T PRK10091 280 LMLFFFGG------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKG-------G-----ELLGAA--GGQIAF 333 (382)
T ss_pred HHHHHHHh------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc-------c-----hHHHHH--HHHHHH
Confidence 55543221 334444555555555544444434333333322 0 223433 235667
Q ss_pred hhhhhhhhhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Q 009413 167 CSGSLLGVTVMSYIQDT-FGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 167 ~lg~~i~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
++|..+||.++|++.+. .+|+..+.+.+...++.+.....
T Consensus 334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 89999999999998874 68999998877666555444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=112.26 Aligned_cols=171 Identities=8% Similarity=0.057 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhc---CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVV---KMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
.++..+...++....+.....+.+.|+++.+ +.+....+...+...+...++.+..|++.|| +|||+.+..+.+++
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~ 294 (396)
T TIGR00882 216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIM 294 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHH
Confidence 3444444444444555555567788887765 4556677888888888888899999999999 59999999998888
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh-
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW- 161 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 161 (535)
.++..+....+ +.+.+++.+++.|++..........+..+..|+ +.++...+.
T Consensus 295 ~l~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~at~~~~~ 348 (396)
T TIGR00882 295 SVRIIGSSFAT-------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------------RLSATIYLIG 348 (396)
T ss_pred HHHHHHHHhcC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------------ceEEEeehHH
Confidence 88777666655 777788888888887655444444455555555 344555555
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
++....+|..+++.++|++.+..||+..|.+.++..++..+.
T Consensus 349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999877766555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=111.36 Aligned_cols=146 Identities=14% Similarity=0.014 Sum_probs=107.0
Q ss_pred hhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccc
Q 009413 20 AFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWS 99 (535)
Q Consensus 20 ~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (535)
..+.+..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++..+.++..++.+........
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~---- 319 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQD---- 319 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHccc----
Confidence 334466788888875 699999999999999999999999999999995 99999988877766554444333210
Q ss_pred ccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhh
Q 009413 100 TTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSY 179 (535)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~ 179 (535)
+...+....+..+.+..+..+..+.++.|.+|+ +.|+++.++.+...++|..++|.+.++
T Consensus 320 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~~~~~~~~~~gp~~~g~ 379 (426)
T PRK12307 320 -------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------------EVRGLGTGLIYNLAATSGTFNSMAATW 379 (426)
T ss_pred -------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------------HHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence 222221222222233333445667888999998 678999999999999999999999999
Q ss_pred hccccchhHHHH
Q 009413 180 IQDTFGWVLGFA 191 (535)
Q Consensus 180 l~~~~gw~~~f~ 191 (535)
+.++.|+....+
T Consensus 380 l~~~~g~~~~~~ 391 (426)
T PRK12307 380 LGITMGLGAALT 391 (426)
T ss_pred HHHcccHHHHHH
Confidence 999888665433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-11 Score=130.87 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=3.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
+++..+.+ ...++........+++.++++.++.|++.+.+-++..+..++..++++|. -|-|.+-.|.+++++|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 44444455 77777777788899999999999999999999999999999999999993 66678888889999998877
Q ss_pred Hhhccccc-------------------cc----------------cc-C-ccccchHHHHHHHHHHHhcccCCchhhhhh
Q 009413 90 TSTAFSWA-------------------WS----------------TT-N-KISSSSAFLFWSLCLISLGQGGYNPSLQAF 132 (535)
Q Consensus 90 ~~~~~~~~-------------------~~----------------~~-~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 132 (535)
++-+.... ++ .. + .-+.-+..++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 76533211 01 00 0 011134678899999999999999999999
Q ss_pred hhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc---------------------ccc-hhHHH
Q 009413 133 GADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD---------------------TFG-WVLGF 190 (535)
Q Consensus 133 i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~---------------------~~g-w~~~f 190 (535)
+-|..++ +.-+...++.+....+|.++|..+++...+ +.| |...|
T Consensus 166 iDDnv~~-------------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGf 232 (539)
T PF03137_consen 166 IDDNVSK-------------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGF 232 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccc-------------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHH
Confidence 9999888 344677888888899999999888876531 123 77777
Q ss_pred HHHHHHHHHHHHHHHhcccccccc
Q 009413 191 AIPTIAMVTSTAFFSFGSQIYRYK 214 (535)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (535)
++.+.+.++..+-++...++.++.
T Consensus 233 li~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 233 LICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHcCCccCCCc
Confidence 776665555544444444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=112.98 Aligned_cols=176 Identities=11% Similarity=0.022 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH-
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV- 84 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~- 84 (535)
.++...+..++....++++..++|.|+++..|+|..++++....+.++..++.+++|+++||+ |+++....+..+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666777777788889999999988999999999999999999999999999999994 755432333322221
Q ss_pred --HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 85 --GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
+.......... +.+...+..++.|.+..+..........|.+|+ +.|+++.++.
T Consensus 331 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~ 386 (438)
T TIGR00712 331 TIAVIVYWMNPAG-----------NPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------------KAAGTAAGFT 386 (438)
T ss_pred HHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------------hheeeehhhh
Confidence 11111111100 333333334444543322222223467788887 6789999999
Q ss_pred hhHhhhh-hhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCSG-SLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~lg-~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+...++| ..++|.+.|.+.++.||...|++.....+++.+..+.
T Consensus 387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 8888876 4689999999999999999988766655555444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=111.69 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHH--HHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFS--FIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~--~~~ 82 (535)
|.++.+.+..++.......+..+.+.|+++.+|.+..+.+...+.+.++..++.++.|+++||..+||+...... ...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666777777777778888899999999999999999999999999999999999999998423443322211 112
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.......... +.....+..++.|+..++..+....+..|.+|+ ++|+++.++.
T Consensus 296 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~ 351 (379)
T TIGR00881 296 IVSLLVYWLNPAA-----------NPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------------KAAGTAAGFV 351 (379)
T ss_pred HHHHHHHhcCcch-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------------chhHHHHHHH
Confidence 2222222221100 444455556666765555556667788999888 6789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGF 190 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f 190 (535)
+...++|..++|.+.|++.++.||+..|
T Consensus 352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 352 GFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999998754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=106.82 Aligned_cols=161 Identities=15% Similarity=0.079 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDV--VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
..++..+..++-...--++..+++.|+.+. +|+++.+.+...+.+..+..+++++++++.|| +|+||++..+..+..
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence 344444444444445557778999999854 79999999999999999999999999999999 599999888887777
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.++....+ +.. ...+.++.|++.+..+|...+...+.+|+ + .+.+.++.
T Consensus 220 ~~~~l~~~~~-------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-------~-------~~~asai~- 270 (310)
T TIGR01272 220 LLSIGAALTH-------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGR-------H-------TSQGSGIL- 270 (310)
T ss_pred HHHHHHHHcC-------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------h-------hhhhHHHH-
Confidence 7665554433 222 23455678999999999999999998876 1 23334443
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIA 196 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~ 196 (535)
....+|+.+.|.+.|.+.+..|.+.+|++..++
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456789999999999999989988888755543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-09 Score=111.93 Aligned_cols=178 Identities=14% Similarity=0.050 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHH--------
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTI-------- 75 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~-------- 75 (535)
++.++...+..++....++.+..++|.|+++.+|.+..+.++..+...++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 35678888888999999999999999999999999999999999999999999999999999995 654321
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccch
Q 009413 76 LAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKK 155 (535)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r 155 (535)
..+......+........... +....++...+.+.+.++..+.......|..|. .+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~ 394 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYLSA----------AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR--------------FL 394 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCC----------chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh--------------HH
Confidence 111111111111111111000 333344444555555555555555455555443 57
Q ss_pred hhhhhhhhhHhhhhhhhhhhhhhhhcccc---chhHHHHHHHHHHHHHHHHHHh
Q 009413 156 SLFFKWWYFGVCSGSLLGVTVMSYIQDTF---GWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 156 ~~~~~~~~~~~~lg~~i~~~~~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+.+.++.+...++|+.++|.+.+++.+.. +|+..|.+.+...+++.+....
T Consensus 395 g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 395 GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999887643 4888888877766666554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-08 Score=100.69 Aligned_cols=341 Identities=16% Similarity=0.168 Sum_probs=194.6
Q ss_pred hhhHHHHHHHhhhhcCCChhh-HHHHHHHH----HHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 22 KGVASNLVTYLTDVVKMSNSS-AAKTVNSW----CGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSW 96 (535)
Q Consensus 22 ~~~~~~~~~yl~~~l~~s~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 96 (535)
+....+...+.....+.+..+ .+...... .+...+..+..|.++||+ |||..+....+...+......+.
T Consensus 38 ~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~---- 112 (463)
T KOG2816|consen 38 STVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ---- 112 (463)
T ss_pred CcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH----
Confidence 334466666666655544332 23333333 577889999999999995 99999999988887776666655
Q ss_pred cccccCccccchHHHHHHHHHHHh--cccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhh
Q 009413 97 AWSTTNKISSSSAFLFWSLCLISL--GQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGV 174 (535)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 174 (535)
.++.+ + +.++ +.+...+...++++|...+ ++|...+++.+.....+..++|
T Consensus 113 ----------~~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~-------------~~R~~~~gll~~~~~~~~~~~p 165 (463)
T KOG2816|consen 113 ----------GYWFF-L---LLGLSGGFSAIFSVGFAYVADISSE-------------EERSSSIGLLSGTFGAGLVIGP 165 (463)
T ss_pred ----------HHHHh-h---hcccccchhhhhhhhhhheeeccch-------------hHHHHHHHHHHHHHHHHHhHHH
Confidence 32222 2 4333 3445556777888887666 5789999999988999999999
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCcc
Q 009413 175 TVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTV 254 (535)
Q Consensus 175 ~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (535)
.+++++.+..|.-..|.+..+...+..+-.....++..+++.+.. ... + .. .. .
T Consensus 166 ~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~---~~~-----------~--~~--~~--------~ 219 (463)
T KOG2816|consen 166 ALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD---ATL-----------R--EL--TP--------G 219 (463)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc---ccc-----------c--cc--CC--------C
Confidence 999999999999899998888777666555554443222211110 000 0 00 00 0
Q ss_pred chhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH-HHHHHHHHHHhcCCCceeeeecccccccCCCc
Q 009413 255 ELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI-WTMLLMFAVIFQQPATFFTKQGMTMKRNIGSN 333 (535)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 333 (535)
....+++.+.. .... . ..++|..+.++.. .+....- ..+.....+ ...+..
T Consensus 220 ~~~~~~~~~~~--------~~~~---------~-~~~~r~~l~l~l~~~~~~~~~---~~~~~~~~~---~yl~~~---- 271 (463)
T KOG2816|consen 220 SLDSSHVADAF--------QSLT---------K-VGPDRLLLLLLLVAFLSSLPE---AGGASDVLL---LYLKAK---- 271 (463)
T ss_pred cccchhhhhhh--------hhhc---------c-cCCCccchHHHHHHHHHHHHH---hcCceeEEE---EEEeee----
Confidence 00000000000 0000 0 1122222222111 1111111 111110111 122222
Q ss_pred cccCccccc---cc----hhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009413 334 FKIPPATLQ---SA----ITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQ 406 (535)
Q Consensus 334 ~~~~~~~~~---~~----~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 406 (535)
+++...... .. ..+..++..|+.. +.++.+ +.+..|++...+..++.++.+
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~-------~~l~~~-------~~i~lGl~~~~~~~~~~af~~-------- 329 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLS-------SILGEK-------RLISLGLLSEFLQLLLFAFAT-------- 329 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh-------hHhhHHHHHHHHHHHHHHHhc--------
Confidence 233322222 22 2222333332322 222221 356778888888888888752
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009413 407 QYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALS 479 (535)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~ 479 (535)
..|... .............|...++++...+++.+|.++++......+++.+++.+-+.+...+
T Consensus 330 --------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 330 --------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred --------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333322 3333345556778889999999999999999999999999999999999998877654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=114.45 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=123.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++..++..++....++......+.|++..++ +..+.++......++..++.++.++++||+ |||+++..+.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 455666667777777766655555556655566 566777788888899999999999999995 999999999888888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+...+.+. +.+.+++..++.|++.+...+...++++|..+.+ ++++.. ++++.+++.+++
T Consensus 300 ~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~G~~~~~~~~ 361 (437)
T TIGR00792 300 GYLIFFFAGS------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYG-EWKTGV-----RAEGLVYSVRTF 361 (437)
T ss_pred HHHHHHHcch------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcCc-----cchHHHHHHHHH
Confidence 7766655431 5566677778889999988899999999987751 111111 346899999999
Q ss_pred Hhhhhhhhhhhhhhhhccccch
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw 186 (535)
...+|..+++.+.+++.+..||
T Consensus 362 ~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 362 VRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998776666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=112.45 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.+..++...++..+....+...+|.+.++.+|.+....|++.+++.+|..++.++.+++.+|+ ++++.+..+.+++++
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFAL 296 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHH
Confidence 3344344444444454445556788888899999999999999999999999999999999994 999999999988888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+..++++ +.+..++..++.|++.........+.+.+..|+ +.|+|+++++++
T Consensus 297 ~~~~lal~~-------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------------~~~GRv~si~~~ 350 (524)
T PF05977_consen 297 ALLLLALSP-------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------------WVRGRVFSIYQM 350 (524)
T ss_pred HHHHHhcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------HHHhHHHHHHHH
Confidence 888888887 788888888899998888888888888898888 679999999999
Q ss_pred HhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
....+..+|..+.|.+.+.+|-+..+.++++..+++.++..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877765555544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-09 Score=108.18 Aligned_cols=177 Identities=14% Similarity=-0.021 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCG-FTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|.++......++...+......+.++|+++ .|++.++.+++...... ...++.+++|++.||+ |+|+++..+.++..
T Consensus 208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 208 PLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAG 285 (390)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 334555556666666667777788899975 79999999999888764 5567789999999995 99999888776653
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+...........+. .+ +....+...++.+++.|...+...+...+..++ + +.+++.++..+
T Consensus 286 ~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~-----~~~g~~~~~~~ 346 (390)
T TIGR02718 286 SLALLWFAQAAFWL--AP-----GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-------G-----DQAGTDVTAVQ 346 (390)
T ss_pred HHHHHHHHHHHccc--CC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------c-----cchHHHHHHHH
Confidence 33222221110000 00 333334444555666677667777777776554 1 35799999999
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 202 (535)
...++|..++|.++|++.+..||+..|.+..++.+++.+
T Consensus 347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=108.63 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhccc-chHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD-RYSTILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-rk~~~~~~~~~~~ 83 (535)
|.++.+.+..++....++.+..++|.|+++ .|.|..+.+...+.+.++..+++++.|+++|| ++ ||+++..+.++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL 274 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence 445656666667777888888999999975 79999999999999999999999999999999 55 5667777777777
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.+.+.+.. +.... ...++.|++.|...|...+.+.+..++ + ++++...+..+
T Consensus 275 ~~~~~~~~~~-------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~-----~~~g~~~~~~~ 328 (355)
T TIGR00896 275 VGLCGLLFAP-------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQ-------A-----AQAAALSAMAQ 328 (355)
T ss_pred HHHHHHHHhh-------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccC-------H-----HHHHHHHHHHH
Confidence 7766666544 22222 234678999999888877777765554 1 35688888888
Q ss_pred hHhhhhhhhhhhhhhhhccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~g 185 (535)
...+++..++|.++|++.++.|
T Consensus 329 ~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 329 SIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999999988776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-09 Score=106.31 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=142.8
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
++|.+..-.+..++-+=+..++......|-.+++|++..+..++.....+...++++++|+|.|| +|.|++++.+++++
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~ 328 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVIL 328 (438)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHH
Confidence 34566666677777777777888889999999999999999999999999999999999999999 59999999999998
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.+..+...+.. ....+.+.-++.|+..|+.++..-++.++..|+ ++-+++++.|
T Consensus 329 ~~~~~~~~~~~-------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~-------------~k~~~fFgly 382 (438)
T COG2270 329 SIAALYLIFLE-------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK-------------GKEGRFFGLY 382 (438)
T ss_pred HHHHHHHHHcc-------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC-------------ccccceeehh
Confidence 87776666665 445666777889999999999999999999999 3448899999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~ 203 (535)
......++.+||.+.+.+.+..| -|..+..-.+..++++++
T Consensus 383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 99999999999999998877665 455554444444444333
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-09 Score=110.97 Aligned_cols=161 Identities=9% Similarity=0.000 Sum_probs=112.2
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 23 GVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 23 ~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
.+..+.|. +.+++|.+.....+......+...++.+++|+++||+ |||++++.+.++.+++.+++........
T Consensus 289 ~~~~~~p~-i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~----- 361 (479)
T PRK10077 289 VVLYYAPE-IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA----- 361 (479)
T ss_pred HHHHHHHH-HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc-----
Confidence 33334444 4457898887777777777888899999999999995 9999999999998888777654421110
Q ss_pred ccccchHHHHHHHHHHHhcccC-CchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhh---
Q 009413 103 KISSSSAFLFWSLCLISLGQGG-YNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS--- 178 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~--- 178 (535)
.......+.++.+.+.+. ..|..+.+++|.+|+ ++|+++.++.+...++|.++++.+.+
T Consensus 362 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 362 ----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------------AIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ----ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh-------------hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111233334444444433 347788999999998 67999999998888888888765554
Q ss_pred ---hhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 179 ---YIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 179 ---~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
++.+..+|+..|++..+..+++.++.++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred hccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 34457788888888776655555544443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=99.89 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=130.6
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH-H
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI-Y 82 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~ 82 (535)
...+|++.++..+-..+.+=+...-+.++++.+|+|+..++.+.+.....+.+++++.|.++||+ ||+...+.+..+ .
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILT 341 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHH
Confidence 45677777777766666655556678999999999999999999999999999999999999997 999876666554 4
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
..+...+.++.. .-.++..+.|+.......+....++...|+ ++.+++++..
T Consensus 342 l~~H~~l~Ft~l---------------sPy~~m~~lGLsysllAcslWP~va~~vpE-------------~qLGTaygf~ 393 (459)
T KOG4686|consen 342 LLGHSGLFFTFL---------------SPYTSMTFLGLSYSLLACSLWPCVASLVPE-------------EQLGTAYGFI 393 (459)
T ss_pred HHHhhhHHhhhc---------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------------HHhcchHHHH
Confidence 455566666542 234566677777666666677788888887 6789999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc---hhHHHHHHHH-HHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG---WVLGFAIPTI-AMVTSTAFFS 205 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g---w~~~f~~~~~-~~~~~~~~~~ 205 (535)
+...|+|..+-|++++.+.++-| |--.|.+... +.+....+++
T Consensus 394 qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 394 QSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987655 5455554443 3344433333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-09 Score=109.10 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHh-hhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYL-TDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
++...+..++.....++...+.+.|+ ++.+|+|+.++++....+.++..++++++|++.|| +|||+++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHH
Confidence 34444555566666666777888896 56789999999999999999999999999999999 59999998887776666
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
..+..+.+ +. ..+...++.|++.+..+|...+...+.+|+ + .+.+.+...+
T Consensus 339 ~~~~~~~~-------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-------~-------~~~as~l~~~- 389 (438)
T PRK10133 339 CLISAFAG-------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-------TKYGSSFIVM- 389 (438)
T ss_pred HHHHHHcC-------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-------h-------hccchhHHhH-
Confidence 55544443 32 224556778999999999999999998776 1 2334444433
Q ss_pred hhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHH
Q 009413 166 VCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~ 203 (535)
..+|..++|.+.|++.+..| -+..|+++.+..+.....
T Consensus 390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34678888888899988887 788888766655544333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=113.26 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=127.9
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++...+..++..+.+++...++|.|+++.+|.++.+.++......++..++.++.|++.|| +|||+++..+..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 445556677777778888888999999999999999999999999999999999999999999 5999999999888887
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+..+...+.. +.+.+....++.|+|.+...+.......+..|+ ++|+++.+..+.
T Consensus 334 ~~~~~~~~~~~~~---------~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~ 391 (485)
T TIGR00711 334 GFYWRAFTFTPDT---------PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------------HKIARGSSLSNF 391 (485)
T ss_pred HHHHHhccCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHhHHHHHHHH
Confidence 7776653211110 455666777889999988887777777787887 578999999999
Q ss_pred Hhhhhhhhhhhhhhhhccc
Q 009413 165 GVCSGSLLGVTVMSYIQDT 183 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~ 183 (535)
..++|..+|+.+.+.+.++
T Consensus 392 ~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 392 TRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=105.79 Aligned_cols=165 Identities=7% Similarity=-0.068 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++...+..++....+++...++++++.+++|++..+.+.....+.++..++.++.|++.||. +|+..+. +..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence 3345444444555555666666665555567899999999999999999999999999999993 5444344 4344333
Q ss_pred H-HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 85 G-LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
. .++..... +.+.+.+..++.|++.+...+...+++.+..|+ ++++..+..+
T Consensus 294 ~~~~l~~~~~-------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 346 (394)
T PRK10213 294 SALVLTLWGS-------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD--------------QAEKAGSIQV 346 (394)
T ss_pred HHHHHHHHhh-------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc--------------cHHHHHHHHH
Confidence 3 33333333 566677788889999999889888888887775 2345566666
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMV 198 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~ 198 (535)
...++|..+||.++|++.+..|++..+...+...+
T Consensus 347 ~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 347 AVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 77889999999999999999999888877665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-09 Score=113.27 Aligned_cols=154 Identities=11% Similarity=-0.006 Sum_probs=127.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+....+..++....+++...+++.|+++.+|.|+.+++.....+.++..++.++.|++.||+ |||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4445566677777777888888999999999999999999999999999999999999999995 999999988888877
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+++....... +.+......++.|+|.|...+.....+.+..|+ ++++.+.+.+++
T Consensus 338 ~~~~l~~~~~~~----------~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~ 394 (495)
T PRK14995 338 SFYGLAMTDFST----------QQWQAWGLMALLGFSAASALLASTSAIMAAAPP-------------EKAAAAGAIETM 394 (495)
T ss_pred HHHHHHHhcCCC----------chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-------------HhcchHHHHHHH
Confidence 776555432111 445556678889999999888888888888887 568999999999
Q ss_pred Hhhhhhhhhhhhhhhhcc
Q 009413 165 GVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~ 182 (535)
..++|..+|+.+.+.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887744
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-09 Score=109.27 Aligned_cols=174 Identities=16% Similarity=0.097 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhh--hcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTD--VVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
|.++......++..+.+.....+.+.|+.. +.+.+....+.+.....+.....+++.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 445555566666666665555667777753 3456667778888888777778888999999995 9999999898888
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.....+... +.+.+.+..++.++|.+...|...+++.+..|+ +.|++.++..
T Consensus 285 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-------------~~~~~~~~~~ 339 (395)
T PRK10054 285 VIGLVGFIFSGN------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-------------GMKASYFSAQ 339 (395)
T ss_pred HHHHHHHHHcch------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-------------ccceehHhHH
Confidence 887766655421 556667778889999888888888899998887 4567777754
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFS 205 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 205 (535)
+ ...+|..+||.++|++.++.|....|++...+.+++.++.+
T Consensus 340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 4 56689999999999999999988888775555554444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=108.92 Aligned_cols=147 Identities=16% Similarity=0.029 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
..+.+.+..++....++.+..++| ++.+++|.+..+.+...+...++..++.++.|+++||+ |||+.+....+....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 344455556666777777777777 66678999999999999999999999999999999995 9985544443333333
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
..+..... +.....+..++.|++.+...+...+++.|.+|+ ++|+++.++.+..
T Consensus 329 ~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~~~~ 382 (398)
T TIGR00895 329 VLVGSTLF-------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------------AIRATGVGWAIGI 382 (398)
T ss_pred HHHHHHhh-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------------HHHHHHHHHHHHH
Confidence 22222223 556667778889999998899999999999998 6789999999999
Q ss_pred hhhhhhhhhhhhhhh
Q 009413 166 VCSGSLLGVTVMSYI 180 (535)
Q Consensus 166 ~~lg~~i~~~~~~~l 180 (535)
..+|..++|.++|++
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999998875
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-08 Score=104.81 Aligned_cols=194 Identities=18% Similarity=0.186 Sum_probs=146.2
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.+..+.....+..-.+.+........+.+.++++..+.|++.+.+-++..+...+..+.+-|. -|-|.+-.|.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4455555555555555568888888999999999999999999999999999999999999995 677788889999999
Q ss_pred HHHHHHhhccccc-----ccc-------c-------------------------Cccccc-hH-HHHHHHHHHHhcccCC
Q 009413 85 GLVALTSTAFSWA-----WST-------T-------------------------NKISSS-SA-FLFWSLCLISLGQGGY 125 (535)
Q Consensus 85 ~~~~~~~~~~~~~-----~~~-------~-------------------------~~~~~~-~~-~~~~~~~l~g~g~g~~ 125 (535)
+.++.++-..... ..+ + ...+.+ ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9988876632210 000 0 001111 33 5788899999999999
Q ss_pred chhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc------------------cccc-h
Q 009413 126 NPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ------------------DTFG-W 186 (535)
Q Consensus 126 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~------------------~~~g-w 186 (535)
++...+|+=|...+ ++-....++.+....+|.++|.+++++.. .+.| |
T Consensus 255 ~tlGisYiDDnvk~-------------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW 321 (735)
T KOG3626|consen 255 FTLGISYIDDNVKK-------------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW 321 (735)
T ss_pred ccCCCccccccccc-------------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH
Confidence 99999999997766 34577888999999999999999888752 1233 7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccc
Q 009413 187 VLGFAIPTIAMVTSTAFFSFGSQIYR 212 (535)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~~~~~~~~~ 212 (535)
+..|++.+.+.++..+.++...+..+
T Consensus 322 WlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 322 WLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 88888888777776666666555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-09 Score=107.47 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=112.4
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 23 GVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 23 ~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
....++|.|+++..+ ++.+.++..+...++..++..+.+++.||.++.++.+..+.++..++..+....+
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 344567888876555 7788888888777766666666677766545767777777777777776666665
Q ss_pred ccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 103 KISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+.+.+.+..++.+++.+...|...+++.+..|+ ++|+++++.++...++|..+||.++|++.+
T Consensus 296 ----~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-------------~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 296 ----NLQQLFTLICLFYIGSIIAEPARETLSASLADA-------------RARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-------------ccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 666666677778888888888889999999988 578999999999999999999999999987
Q ss_pred ccc----hhHHHHHHHHHHHHHH
Q 009413 183 TFG----WVLGFAIPTIAMVTST 201 (535)
Q Consensus 183 ~~g----w~~~f~~~~~~~~~~~ 201 (535)
+.+ ....+....+..++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 359 LGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHhhcCCcchHHHHHHHHHHHHH
Confidence 642 2344444444444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=110.36 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=123.4
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+....+..++....++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++..+.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5566666667777777777767777788888898776666655555677788999999999995 999999999988888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+...+.+.. +.+.+++..++.|+|.+...+...++.+|..|.+ |. +|.. ++++..++.+++
T Consensus 307 ~~~~~~~~~~~-----------~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~-~~-~~g~----r~~G~~~~~~~~ 369 (448)
T PRK09848 307 GYLLFFWVSVW-----------SLPVALVALAIASIGQGVTMTVMWALEADTVEYG-EY-LTGV----RIEGLTYSLFSF 369 (448)
T ss_pred HHHHHHHcCch-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HH-hhCc----cchhHHHHHHHH
Confidence 87766654311 5566677778899999999999999999987751 11 1111 245888899999
Q ss_pred Hhhhhhhhhhhhhhhhccccch
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw 186 (535)
...+|..+|+.+.+.+.+..||
T Consensus 370 ~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 370 TRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998887655444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=104.50 Aligned_cols=170 Identities=12% Similarity=0.119 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWC-GFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
++.++...++..........+.++|+.+++|++..+.+++..... ++..++.+++|++.|| +|||+.+..+.++..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 443444444444333333344556777889999999999987654 4578899999999999 59999887776665555
Q ss_pred HHHH---HhhcccccccccCccccchHHHHHHHH----HHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 86 LVAL---TSTAFSWAWSTTNKISSSSAFLFWSLC----LISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 86 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
.+.. +..+. +.+.+++..+ ..|++.+...+....++.+.+|. + .
T Consensus 290 ~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~----~ 340 (402)
T PRK11902 290 NLGYWVLAVTPK------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-------------T----Q 340 (402)
T ss_pred HHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------------H----H
Confidence 4333 22221 4444444443 44555666666666777776665 2 2
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
.+.++...++|..++..++|++.+..||+..|.+.+++.++++++.+.
T Consensus 341 ~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 341 YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 234444456777666678999999999999999888777666555433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=102.76 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|..+...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3344455555555566667777788899889999999999999999999999999999999995 999999888877777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+++........ . +...++...++.|++.+...+.......|..|+ +|+++.+.++.
T Consensus 285 ~~~~~~~~~~~~~------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~ 342 (385)
T TIGR00710 285 SAVLLEITAILGL------G--SWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------------VAGTASALFGT 342 (385)
T ss_pred HHHHHHHHHHhcc------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------------cchHHHHHHHH
Confidence 7665554321110 0 334455556778888888888888888887654 46888888776
Q ss_pred Hhhh-hhhhhhhhhhhhccccchhHHHHH
Q 009413 165 GVCS-GSLLGVTVMSYIQDTFGWVLGFAI 192 (535)
Q Consensus 165 ~~~l-g~~i~~~~~~~l~~~~gw~~~f~~ 192 (535)
.... |.+.+|.+ +.+.+..+|...+..
T Consensus 343 ~~~~~g~i~~~~~-~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 343 LRLVLGAIVGYLV-SLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence 6654 55555554 455554455544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=120.80 Aligned_cols=164 Identities=13% Similarity=0.053 Sum_probs=131.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChh-hHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNS-SAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|.++...+..++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 4445555555555566667778899999999999999 999999999999999999999999995 99999988888888
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.++..+.. +.+.+++..++.|++.+...+...+++.+..|+ +.|+++++..+
T Consensus 311 ~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~rg~~~~~~~ 364 (1146)
T PRK08633 311 LSLFLLPTAP-------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-------------KELGKVLAANN 364 (1146)
T ss_pred HHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-------------cchhhhhHHHH
Confidence 7777777665 677777888889999999888889999999888 67899999999
Q ss_pred hHhhhhhhhhhhhhhhhcc-ccchhHHHHHHHH
Q 009413 164 FGVCSGSLLGVTVMSYIQD-TFGWVLGFAIPTI 195 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~-~~gw~~~f~~~~~ 195 (535)
+..++|..+++.+++.+.. ..++...|.+.+.
T Consensus 365 ~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 365 FLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999888777765543 2345555554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.4e-09 Score=121.81 Aligned_cols=179 Identities=10% Similarity=-0.050 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|.++...+..++..+.+..+..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~ 302 (1140)
T PRK06814 224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG 302 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence 45667777777777777778888999999999999999999999999999999999999999985 77776666655555
Q ss_pred HHHHHHHhhccc----c-ccccc--CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchh
Q 009413 84 VGLVALTSTAFS----W-AWSTT--NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKS 156 (535)
Q Consensus 84 ~~~~~~~~~~~~----~-~~~~~--~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 156 (535)
++.+.+.+.... + .+... ...+.+.+.++++.++.|++.+...+...+++.+.+|+ +.|+
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~G 369 (1140)
T PRK06814 303 LFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-------------AHRA 369 (1140)
T ss_pred HHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-------------ccce
Confidence 544434332000 0 00000 00000566777888889999999999999999999998 6789
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhcc-ccchhHHHHHHHHH
Q 009413 157 LFFKWWYFGVCSGSLLGVTVMSYIQD-TFGWVLGFAIPTIA 196 (535)
Q Consensus 157 ~~~~~~~~~~~lg~~i~~~~~~~l~~-~~gw~~~f~~~~~~ 196 (535)
++++..++..++|..+++.+++.+.+ ..++...+++.+.+
T Consensus 370 ~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 370 RVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999988863 44666666554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=103.43 Aligned_cols=193 Identities=9% Similarity=-0.067 Sum_probs=126.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+..|.+++.-++..-+|.+...++|.|+++.+. ............+...+.++++|+++|| +|+||++..+.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH
Confidence 347878888777766777777789999987553 3333333444567888999999999999 5999999998887777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCC--------CcCCcccccchh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELP--------TTTDNQKSDKKS 156 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~r~ 156 (535)
+........... + +.+.+.+.+..+...++.|.-..+...++.+.+|+++.+- ++...+.|++-+
T Consensus 329 ~~~~~~l~lp~~-----~--~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g 401 (462)
T PRK15034 329 FSALLFLTLPGT-----G--SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA 401 (462)
T ss_pred HHHHHHHHhccc-----c--ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence 664433222100 0 0045555555555556667767788888888887411100 111112223567
Q ss_pred hhhhhhhhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 009413 157 LFFKWWYFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 157 ~~~~~~~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~ 207 (535)
.+.++......+|+.+-|.+.+...+..| +...|+...+..++++++-+..
T Consensus 402 ~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 402 AALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999988777665544 7878877666655555544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=109.18 Aligned_cols=168 Identities=17% Similarity=0.008 Sum_probs=107.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHH------------HHHHHHHHHhhhhhhhHHhhhhcccchHHHHHH
Q 009413 11 IVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAK------------TVNSWCGFTSMLPLVLAPLADSYWDRYSTILAF 78 (535)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~ 78 (535)
....++..+.+|++..+.|.+++ +.|++..+.+. ......++..++.++.++++||+ |||++++.+
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence 34445566778888888888885 67876543221 12223345556778889999995 999999888
Q ss_pred HHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhh
Q 009413 79 SFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLF 158 (535)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 158 (535)
.++.+++..+......... +...+....+...++..+..+....+.+|.+|+ +.|+++
T Consensus 372 ~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------------~~R~~~ 429 (502)
T TIGR00887 372 FFILTVLFFVLGFAYNHLS---------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------------RYRSTA 429 (502)
T ss_pred HHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------------hHHHHH
Confidence 8777766655544321000 111111111112222223345667788999998 679999
Q ss_pred hhhhhhHhhhhhhhhhhhhhhhccc----------cchhHHHHHHHHHHHHHHH
Q 009413 159 FKWWYFGVCSGSLLGVTVMSYIQDT----------FGWVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 159 ~~~~~~~~~lg~~i~~~~~~~l~~~----------~gw~~~f~~~~~~~~~~~~ 202 (535)
.++.+....+|++++|.+.+++.+. .++...|.+.++..+++.+
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999988763 3344556655554444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-08 Score=102.44 Aligned_cols=158 Identities=11% Similarity=-0.071 Sum_probs=116.8
Q ss_pred hhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 18 RFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWA 97 (535)
Q Consensus 18 ~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (535)
..........++.|+++.+|.|+.+.|.+.....++..++.++.+++.||. ++|+++..+.+ ..+..+.....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~---- 291 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence 344445556677888889999999999999999999999999999999995 99988887753 333333334333
Q ss_pred ccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhh
Q 009413 98 WSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177 (535)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~ 177 (535)
+.+...+..++.|++.+...+...+.+.+..|+ + ..++++.+..++..++|..++..+.
T Consensus 292 ---------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~--------~----~~~g~~~a~~~~~~~~~~~~~~~~~ 350 (393)
T PRK11195 292 ---------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV--------L----VGAGHSIAVQNFNENLAMLLMLGLY 350 (393)
T ss_pred ---------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc--------c----ccchhHHHHHhHHHHHHHHHHHHHH
Confidence 556566777788999888888788888775333 1 2379999999999999999999888
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHH
Q 009413 178 SYIQDTFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 178 ~~l~~~~gw~~~f~~~~~~~~~~~~~ 203 (535)
+.+ +..|-+..+.+.....++...+
T Consensus 351 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 351 SLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 855 5567666666555544444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.9e-08 Score=99.77 Aligned_cols=167 Identities=14% Similarity=-0.004 Sum_probs=113.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccch---HHHHH-HH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRY---STILA-FS 79 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk---~~~~~-~~ 79 (535)
.|.+|.+....++....+|++..++|.|+++ .|+|.. .+.......+... +..++++||. .|| +.... ..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~ 264 (368)
T TIGR00903 191 RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAA 264 (368)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHH
Confidence 3567888889999999999999999999964 677764 5555444444433 3457888884 543 33222 33
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++.+++........ +....++...+.+++.....+...++.+|.+|+ +.|+++.
T Consensus 265 ~~~a~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------------~~rgt~~ 318 (368)
T TIGR00903 265 LLIAAFFLALAFEL-------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------------ELHGKAA 318 (368)
T ss_pred HHHHHHHHHHHHcc-------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------------hhcCccc
Confidence 33333333333333 333334455556677777777788999999998 6799999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 204 (535)
++.+...++|+..+|.+.+.+.. +-+..|.+.++..+++.+..
T Consensus 319 G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 319 GAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887763 55556666555555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-08 Score=101.45 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWC-GFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
++.+.+..++..+.++....+++.|+++ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5666666677788888888999999986 9999999998888766 56789999999999995 9999988888777766
Q ss_pred HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG 165 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 165 (535)
..+..+....... .+..+.+.+.+....++.+++.+...+...+++.|.+|+ ++|++.++.++..
T Consensus 289 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~~~ 353 (356)
T TIGR00901 289 NAGFVWLASNGHH--DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-------------KFGATQMALLSSL 353 (356)
T ss_pred HHHHHHHHhcCcc--cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------------CccHHHHHHHHHH
Confidence 5544433100000 000000445667778888999999999999999999999 6789999988776
Q ss_pred hh
Q 009413 166 VC 167 (535)
Q Consensus 166 ~~ 167 (535)
.+
T Consensus 354 ~~ 355 (356)
T TIGR00901 354 SA 355 (356)
T ss_pred Hh
Confidence 55
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=93.93 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+..|.+.+...++++.+|.++.|+|.++. +.|+|..++|+.++...+.+....+..-.+++|.-.+|+..+...+.+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 45788999999999999999999999997 68999999999999999999999999999999754677777777888888
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
|.+.+.+.+ ....... .+++|+|.|+.+|....++.+..++ + ++-++..+..+-
T Consensus 287 G~~G~~~~P-------------~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~---------a---~~Aa~LSgmaQg 340 (395)
T COG2807 287 GLVGLLLAP-------------GQLPILW-ALLLGLGQGGAFPLALTLILLRSSD---------A---AIAAALSGMAQG 340 (395)
T ss_pred HHHHHHHhh-------------hhHHHHH-HHHHhCccchHHHHHHHHHHhhcCC---------h---HHHHHHHHHhhh
Confidence 888777766 2222333 5889999999999999999998766 2 345666666666
Q ss_pred Hhhhhhhhhhhhhhhhccccc-hhHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIA 196 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~ 196 (535)
...+=+..||.+.|++-|..| |+.+.......
T Consensus 341 ~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 341 VGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred hhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 666667779999999987765 88776654443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-07 Score=89.19 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=102.2
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHH
Q 009413 34 DVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFW 113 (535)
Q Consensus 34 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (535)
++.|++..+++.+...-...+.+..++.|.++||+ ||||.-+...++++++.+. -..+ ++..+++
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~-k~~~-------------~~~~L~~ 126 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLT-KHSS-------------NYPVLLL 126 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHH-Hhcc-------------ccHHHHH
Confidence 46899999999999999999999999999999995 9999888777777766542 2233 8999999
Q ss_pred HHHHHHhcccCCchhhhhh-hhccCCCCCCCCCcCCcccccchhhhhhhhh-hHhhhhhhhhhhhhhhhccccc--hhHH
Q 009413 114 SLCLISLGQGGYNPSLQAF-GADQLDSDDELPTTTDNQKSDKKSLFFKWWY-FGVCSGSLLGVTVMSYIQDTFG--WVLG 189 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~i~~~~~~~l~~~~g--w~~~ 189 (535)
+|++.|++....+++--+. +.|+ .+ ++-++ +..+..++... +.+.+-++.+..++-++.+..+ ...+
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh-~~-------~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP 197 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEH-NK-------RGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP 197 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-------cCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence 9999999999888877654 4443 22 11110 12333333322 2223334444445555555554 4788
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 009413 190 FAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 190 f~~~~~~~~~~~~~~~~~~ 208 (535)
|..+.+..+++.+++....
T Consensus 198 F~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8887777666655544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-08 Score=101.67 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=134.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|....+.+..++..+++.......+.|.+..+|.+ ...+.......+...++.++.++++||+ |+|+++..+.++.+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence 366777888888888888877778888888778876 6677888888899999999999999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.++..+.... +.+.+++..++.|++.+...+...++++|..+. +|.+ |.+ ++.+..++.+.
T Consensus 302 ~~~~~~~~~~~~-----------~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~-~e~~-tg~----r~~g~~~s~~~ 364 (428)
T PF13347_consen 302 LGFLLLFFLGPG-----------SPWLVLILFILAGIGYGAFFVIPWAMLADVIDY-DEWK-TGR----RREGMYFSVNS 364 (428)
T ss_pred HHHHHHHHHHhh-----------hHHHHHHHHHHhHhhhcccccccccccccchhh-HHHh-cCC----CchHHHHHhhh
Confidence 998887777521 788899999999999999999999999999876 1111 111 34588888999
Q ss_pred hHhhhhhhhhhhhhhhhccccch
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw 186 (535)
+...+|..+++.+.+.+.+..|+
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999998887655544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=101.04 Aligned_cols=143 Identities=22% Similarity=0.278 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCC-hhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMS-NSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
+.+....++..+.++....+++.|+.+++|.+ ..+.+...+...+...++.++.|+++||+ |+|+..........++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 43445555555677778899999999999999 79999999999999999999999999995 99888877777776666
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHh
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGV 166 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 166 (535)
+......... +....++..++.|++.+...+...+++.|.+|+ ++|+++.+..+...
T Consensus 288 ~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~g~~~~~~ 344 (352)
T PF07690_consen 288 LGLLLLPFSS----------SPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------------EYRGTAFGLFNSIG 344 (352)
T ss_dssp HHHCCSHHHC----------HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------HHHHHHHHHHHHHH
Confidence 6655544221 456667778889999999999999999999988 67999999999999
Q ss_pred hhhhhhhh
Q 009413 167 CSGSLLGV 174 (535)
Q Consensus 167 ~lg~~i~~ 174 (535)
++|..+||
T Consensus 345 ~~~~~igP 352 (352)
T PF07690_consen 345 SLGGIIGP 352 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.1e-08 Score=103.71 Aligned_cols=176 Identities=15% Similarity=0.104 Sum_probs=150.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccc--hHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDR--YSTILAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--k~~~~~~~~~~ 82 (535)
+.++.+++...+..++++.-..+++.|.. ..+++..+++.+++...+...++.++.|+++|+. .. +.+...++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 56777888888888998888889999998 8999999999999999999999999999999995 63 33555666666
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++...+++.. +++.++..-++.|+..|.+.+.....+.|..+. ++.+.++++.
T Consensus 376 gl~~~~~p~~~-------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------------~~l~~a~Gl~ 429 (509)
T KOG2504|consen 376 GLARLFLPFAT-------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------------EKLSNAYGLL 429 (509)
T ss_pred HHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------------hhcchHHHHH
Confidence 66666777776 888899999999999999988888899999988 5689999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhcc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
.....++..+||.+.|++.+..| |...|+..++..+++....++..
T Consensus 430 l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 430 LLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999988887 99999998888777765555544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=95.15 Aligned_cols=151 Identities=12% Similarity=0.016 Sum_probs=107.1
Q ss_pred HHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 009413 13 IAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTST 92 (535)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~ 92 (535)
...+....++....+.|.|++ +.|++..+.++......++..++.++.+++.|| +|+|+.+....+..+++.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566677788775 589999999998888888889999999999999 499998766665555544333222
Q ss_pred cc-cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhh
Q 009413 93 AF-SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSL 171 (535)
Q Consensus 93 ~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 171 (535)
.. ... +....++...+.+++.+...|...+...+..|+ +|+++.++++.....++.
T Consensus 289 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~g~~~~~~~~~~~ 345 (401)
T PRK11043 289 SLLSHP---------SLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--------------ATGKAAALQNTLQLGLCF 345 (401)
T ss_pred HHhccC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--------------cChHHHHHHHHHHHHHHH
Confidence 11 000 444555666777888888888888777776554 478999998888888888
Q ss_pred hhhhhhhhhccccchhH
Q 009413 172 LGVTVMSYIQDTFGWVL 188 (535)
Q Consensus 172 i~~~~~~~l~~~~gw~~ 188 (535)
.++.+.+.+.+......
T Consensus 346 ~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 346 LASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHccCCChhHH
Confidence 88888888876544433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-08 Score=103.28 Aligned_cols=142 Identities=11% Similarity=-0.081 Sum_probs=100.1
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHH
Q 009413 34 DVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFW 113 (535)
Q Consensus 34 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (535)
+.++.+.. +......+....+.++.++++||+ |||+++..+.++..++.++..+.+.. +.+...+
T Consensus 351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~ 415 (505)
T TIGR00898 351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPVD-----------LYFLRTA 415 (505)
T ss_pred cccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCCC-----------chHHHHH
Confidence 34554432 333344566778888999999995 99999999988888877766665421 2233444
Q ss_pred HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHH
Q 009413 114 SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIP 193 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~ 193 (535)
..++.+++.+...+..+.+.+|.+|+ +.|+.+.++.+....+|.+++|.+.+ + ...++..++.+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~-------------~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~ 480 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPT-------------VVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLF 480 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccH-------------HHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHH
Confidence 44555666667778888999999998 67899999999999999999999988 4 344566666665
Q ss_pred HHHHHHHHHHHH
Q 009413 194 TIAMVTSTAFFS 205 (535)
Q Consensus 194 ~~~~~~~~~~~~ 205 (535)
+...+++.++.+
T Consensus 481 ~~~~~~~~~~~~ 492 (505)
T TIGR00898 481 GGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHH
Confidence 555544444333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=96.15 Aligned_cols=117 Identities=16% Similarity=0.261 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHH
Q 009413 376 VMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFA 455 (535)
Q Consensus 376 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 455 (535)
..+.+.+++.+-.+-++.+..+ .+.|..++.-++.|+..+..-.+.-+|+...+|+++|.+++|
T Consensus 435 Hv~v~~lgLa~~~~Rf~~~S~L----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~ 498 (618)
T KOG3762|consen 435 HVNVMYLGLACNVGRFLYYSYL----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG 498 (618)
T ss_pred ccceeeehhhHHHHHHHHHHHh----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence 3456778888888888888775 467888889999999999988888899999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 456 LYT-SVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 456 ~~~-~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
+.. ...++|-.+|.+++|.+.+.- +....|+.+++.+++..+++....+..++
T Consensus 499 l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 499 LLQGIFHGLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHhcccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 997 557788899999888876521 12345666666666666666555443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.7e-07 Score=93.49 Aligned_cols=148 Identities=7% Similarity=-0.087 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
.+..++..++.....+....+.+.++.+++|.+..+.+.......++..++.++.|++.||+ |||+++..+..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44444555555555666666677788888999999999999999999999999999999995 99999988877654433
Q ss_pred HHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhH-
Q 009413 87 VALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFG- 165 (535)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~- 165 (535)
+.......... +.+...++..+.+.+.+...+.....+.|..|+ .++++.+..+..
T Consensus 275 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~ 331 (377)
T PRK11102 275 IWLVVSALLDL---------GFWALVVGVAAFVGCVSMISSNAMAVILDEFPH--------------MAGTASSLAGTLR 331 (377)
T ss_pred HHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc--------------cchHHHHHHHHHH
Confidence 32222210000 334444444444445555555555666665443 467777765443
Q ss_pred hhhhhhhhhhhhh
Q 009413 166 VCSGSLLGVTVMS 178 (535)
Q Consensus 166 ~~lg~~i~~~~~~ 178 (535)
..+|..+++.+++
T Consensus 332 ~~~g~~~g~~~~~ 344 (377)
T PRK11102 332 FGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHh
Confidence 3466666666543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.6e-07 Score=95.05 Aligned_cols=143 Identities=9% Similarity=0.051 Sum_probs=91.8
Q ss_pred hhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 19 FAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAW 98 (535)
Q Consensus 19 ~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (535)
........+.+.|+++++|++..+.+.......++..++.++.|++.||+ |||+++..+..+..++.+......
T Consensus 217 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 290 (392)
T PRK10473 217 TVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP----- 290 (392)
T ss_pred HHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 33334445567788888999999999999999999999999999999995 999999999888888877776654
Q ss_pred cccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccch-hhhhhhhhhHhhhhhhhhhhhh
Q 009413 99 STTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKK-SLFFKWWYFGVCSGSLLGVTVM 177 (535)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~lg~~i~~~~~ 177 (535)
+....+....+.+.|.+...+.. ...+..|. ++| +.+.+. ..++..+++.++
T Consensus 291 --------~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~-------------~~~~g~~~~~----~~~~~~~g~~~~ 343 (392)
T PRK10473 291 --------SHAVSLFGITLICAGFSVGFGVA--MSQALGPF-------------SLRAGVASST----LGIAQVCGSSLW 343 (392)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhHHH--HHHHhccC-------------cccccHHHHH----HHHHHHHHHHHH
Confidence 33333333344333333333332 22333343 122 333333 345666666666
Q ss_pred hhhccccchhHHHHHHH
Q 009413 178 SYIQDTFGWVLGFAIPT 194 (535)
Q Consensus 178 ~~l~~~~gw~~~f~~~~ 194 (535)
+++.++.|+.....+.+
T Consensus 344 ~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 344 IWLAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHHHhccchhHHHHH
Confidence 77766667665444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=99.40 Aligned_cols=165 Identities=14% Similarity=0.056 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+..++...++.....+......+.|.+ +..-+....++..+...+...++.++.++++|| +|+|++++.+.++..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIGDADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 55666667777777766666555554444 433356667777777678888999999999999 5999999988877666
Q ss_pred HHHHHHhhcc-cccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 85 GLVALTSTAF-SWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 85 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+.+....... .+. +.+.+++..++.|++.+...+...++++|..+.+ |.++ .. ++.+..++...
T Consensus 309 ~~~~~~~~~~~~~~---------~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~-e~~t-G~----R~~G~~~s~~~ 373 (473)
T PRK10429 309 SCGVLLLMGLAAPH---------NALLIVIAGILLNIGTALFWVLQVIMVADTVDYG-EYKL-GI----RCESIAYSVQT 373 (473)
T ss_pred HHHHHHHHhccCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHhc-Cc----cchhHHHHHHH
Confidence 6555433210 010 5566667777888999999999999999987752 2211 11 23467888899
Q ss_pred hHhhhhhhhhhhhhhhhccccch
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw 186 (535)
+...+|..+++.+.|++.+..|+
T Consensus 374 ~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 374 MVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999988765554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-05 Score=82.11 Aligned_cols=334 Identities=12% Similarity=0.092 Sum_probs=176.6
Q ss_pred HHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCc
Q 009413 47 VNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYN 126 (535)
Q Consensus 47 ~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 126 (535)
..+......+.+++++.+.|+ +|.|..+.++...+....+...+. |-+.++++-++.|+|.+..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------N~y~~yfssallG~Gaallw 120 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------NSYYLYFSSALLGFGAALLW 120 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------chHHHHHHHHHhhhhHHhee
Confidence 555567778899999999999 599999999999888877666655 77889999999999999999
Q ss_pred hhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhh---hhccc-----cchh--------HHH
Q 009413 127 PSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMS---YIQDT-----FGWV--------LGF 190 (535)
Q Consensus 127 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~---~l~~~-----~gw~--------~~f 190 (535)
.....++++..++ +.+.+..++.-...+.+.++|.+... +..+. .+.+ ..+
T Consensus 121 ~GqG~ylt~~st~-------------~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (461)
T KOG3098|consen 121 TGQGGYLTSNSTR-------------ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDF 187 (461)
T ss_pred cccceehhhcCCh-------------hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhH
Confidence 9989999998776 34455555544444555554433322 21111 1111 011
Q ss_pred HHHHH---HHHHHHHHHHhccccccccCCCcccc--cchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccc
Q 009413 191 AIPTI---AMVTSTAFFSFGSQIYRYKSDETLKC--TVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLC 265 (535)
Q Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (535)
.+-.+ ...+..+. .....+.+.+....++. +....+..+. ..+
T Consensus 188 ~i~~~~~v~~~~~~l~-~i~~~~~p~~~~~~~~~~~~~~~~~~l~~---~~~---------------------------- 235 (461)
T KOG3098|consen 188 EIKVLFGVLLAISVLS-IINFDFLPSKDVVNCKSSSETSFSELLKL---TFK---------------------------- 235 (461)
T ss_pred HHHHHHHHHHHHHHHH-hhheeecCccchhhhhhhccccHHHHHHH---HHH----------------------------
Confidence 11111 11111111 11111111111000000 0000000000 000
Q ss_pred cccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccch
Q 009413 266 GNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAI 345 (535)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 345 (535)
....++++.+.+.+....+.-..+...+..-. ..... .....-.+..+.
T Consensus 236 -----------------------l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i----~ft~~----~~~n~~~~~ai~ 284 (461)
T KOG3098|consen 236 -----------------------LLKTPKMLLLFPFFFYTGLETSFWISIYPTCI----SFTRK----LGSNTTYLIAIY 284 (461)
T ss_pred -----------------------HhcCHhHHHHHHHHHHHHHHHHHHHhccchhh----hhhhh----ccCcchhHHHHH
Confidence 11123344444444433332222222221111 11111 011222333444
Q ss_pred hHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cCCCCccchhHHHHHHH
Q 009413 346 TVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQ--QYSETVPLSIFWLLPQY 423 (535)
Q Consensus 346 ~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 423 (535)
.++..++....+.....+.||..+ ++....+.++.++..+.+++.-.-......+.+ +.+..-..+.....+..
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 444444444444444445555433 445556677776666666544332111110001 01111122355677888
Q ss_pred HHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 424 ILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIE 476 (535)
Q Consensus 424 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~ 476 (535)
++.|+++......-+.+.....| +.|..+.+++-+.+.+++.++.+..+...
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~~ 412 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYLL 412 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 89999999999999999999995 55999999999999998888877776544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=97.46 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=108.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++.++...++...+.... ..+..|+.++.--+....+.......+...++.+++++++||+ |+|+.+..+.++..+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTR-GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHH-hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 44555555555544444333 3344555433322334444555555677778889999999995 999999988776665
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.+...+.+.. +.+.+++..++.|++.+...+...++++|..+. +|. ++.+ ++.+..++.+.+
T Consensus 307 ~~~~~~~~~~~-----------~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~-~e~-~~G~----r~~g~~~s~~~~ 369 (444)
T PRK09669 307 LSALIFFIPPS-----------NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDY-EEK-RSGR----RLDGLVFSTNLF 369 (444)
T ss_pred HHHHHHHhCcc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhh-hcCc----CcchHHHHHHHH
Confidence 44333332210 666677778889999999999999999998874 111 1111 234777888999
Q ss_pred Hhhhhhhhhhhhhhhhccccch
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw 186 (535)
+..+|..+|+.++|++.+..|+
T Consensus 370 ~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 370 AIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988766665
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.4e-07 Score=93.52 Aligned_cols=163 Identities=11% Similarity=-0.010 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDV-VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
.++...+..++-.....++.++++.|+++. .+.+....+...+.+.....++++++|+++||+ ++||++..+.++..+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344445555555555556668889998653 255556666677777788899999999999995 999998888887777
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
..++....+ +... ....++.|++.+..+|...+...+..++ + ...+.+...+
T Consensus 312 ~~ll~~~~~-------------~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~-------------~-~~~~s~~l~~ 363 (410)
T TIGR00885 312 LCLGSIFAG-------------GHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQ-------------D-TKYGAAGLVM 363 (410)
T ss_pred HHHHHHHcC-------------ChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------h-hhhhHHHHHH
Confidence 777666654 3333 4666777888888899999999998887 1 1222223333
Q ss_pred Hhhhhhhhhhhhhhhhcccc------chhHHHHHHHHHHH
Q 009413 165 GVCSGSLLGVTVMSYIQDTF------GWVLGFAIPTIAMV 198 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~------gw~~~f~~~~~~~~ 198 (535)
..+|+.+.|.+.|++.|+. +.+..|+++.++.+
T Consensus 364 -~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 364 -AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred -HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 3499999999999999854 47888887666544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-07 Score=91.97 Aligned_cols=178 Identities=9% Similarity=0.091 Sum_probs=139.1
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC---CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVK---MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
|++|.+.+........|+..-...+.|.+..++ .++...|...+.-.+...++-.+..++-+| +|.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 566766666555555666665667888875443 345667888888888999999999999999 5999999999999
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
+++=.+.+++++ +++.+.+.+.++++-.+....+..-++++.+|+ +...+.+.+
T Consensus 299 ~~iRi~~~~~~~-------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------------rlsAt~y~v 352 (412)
T PF01306_consen 299 MAIRIIGSGFAT-------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------------RLSATLYLV 352 (412)
T ss_dssp HHHHHHHHHT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------------GGHHHHHHH
T ss_pred HHHHHHHHhhhc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------------hHHHHHHHH
Confidence 999889999988 899999999999999999999999999999998 345566666
Q ss_pred -hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 162 -WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 162 -~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
++....+|..+.+.++|++.|+.|.+..|++-+.+.+...++..+..+
T Consensus 353 ~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 353 GFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 567888999999999999999999998887766655555555455444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=94.03 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=122.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccc-------h-HHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDR-------Y-STI 75 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-------k-~~~ 75 (535)
.+.+|.+.+..+++..+++.+..++|.|+++.+|++..+.|+..+...+...+..+++|.++||. -+ + |.+
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkif 335 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIF 335 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999996 43 1 222
Q ss_pred -HHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccc
Q 009413 76 -LAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDK 154 (535)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (535)
.++....+++.+.+++...... .. ....+.++..+.|+..++ ...-..|..|. .
T Consensus 336 n~i~~~~~ai~l~~l~~~~~~~~-----~~--a~~~l~~~~~~~g~~~~G----f~~~~~~~apq--------------~ 390 (466)
T KOG2532|consen 336 NTIAFGGPAVFLLVLAFTSDEHR-----LL--AVILLTIAIGLSGFNISG----FYKNHQDIAPQ--------------H 390 (466)
T ss_pred HhHHHHHHHHHHHeeeecCCCcc-----hH--HHHHHHHHHHHcccchhh----hHhhhhhccch--------------H
Confidence 2222333334444444431110 00 111222222222222222 22222232332 3
Q ss_pred hhhhhhhhhhHhhhhhhhhhhhhhhhccc---cchhHHHHHHHHHHHHHHHHHHhc
Q 009413 155 KSLFFKWWYFGVCSGSLLGVTVMSYIQDT---FGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 155 r~~~~~~~~~~~~lg~~i~~~~~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
-+.+++..+...++.+.++|.+.+.+... ..|+..|++.++..+++.+.+.+.
T Consensus 391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 57889999999999999999999999842 369999999888777765544443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-07 Score=92.77 Aligned_cols=142 Identities=14% Similarity=0.019 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++.+.+..++....++.+..+++.|+++.+|++..+++.......+...++.+++|+++||+ |||+.+..+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence 3455556666666667778888999999999999999999999999999999999999999995 999988877776666
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+..+..+...... +.....+...+.+++.|...+...+++++..|. +++.+.+..+.
T Consensus 304 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------------~~g~~~g~~~~ 360 (366)
T TIGR00886 304 GAFLVVLGLVSPL---------SLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR--------------ATGAVSGLVGA 360 (366)
T ss_pred HHHHHHhcCCCcc---------hHHHHHHHHHHHHHHhccccchhhhcchhhchh--------------hcccHHHHHHH
Confidence 6555544331100 233334444445555566566677777777654 47888888877
Q ss_pred Hhhhhh
Q 009413 165 GVCSGS 170 (535)
Q Consensus 165 ~~~lg~ 170 (535)
..++|+
T Consensus 361 ~~~~g~ 366 (366)
T TIGR00886 361 IGNLGG 366 (366)
T ss_pred hccCCC
Confidence 777653
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-07 Score=88.63 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=114.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhh--hcCCC-----------------hhhHHHHHHHHHHHHhhhhhhhHHh
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTD--VVKMS-----------------NSSAAKTVNSWCGFTSMLPLVLAPL 64 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~l~~s-----------------~~~~~~~~~~~~~~~~~~~~~~G~l 64 (535)
+|..+++..+.+.+.+.||+.+-......+. ..|.. ...--.=.....+...-+.++.+++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 5667888999999999999987654443332 11211 1111122233356677888999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCC
Q 009413 65 ADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELP 144 (535)
Q Consensus 65 aDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 144 (535)
.|| +|||+++-.+++++.++.+++.....+-. ....++.+|++.. +.+.+.+.|..|.+|.
T Consensus 405 ver-lGRKkTMal~l~~f~iflfll~~c~~rn~---------~tvllf~arafis----g~fqvaYvYtPEVyPT----- 465 (528)
T KOG0253|consen 405 VER-LGRKKTMALSLILFGIFLFLLTTCKTRNA---------YTVLLFTARAFIS----GAFQVAYVYTPEVYPT----- 465 (528)
T ss_pred HHH-hcchhHHHHHHHHHHHHHHHHHHhcCcch---------hHHHHHHHHHHHh----chheEEEEecCcccch-----
Confidence 999 59999999999999999888877763311 2334566777664 3345678999999998
Q ss_pred CcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHH
Q 009413 145 TTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIA 196 (535)
Q Consensus 145 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~ 196 (535)
..|+...+....+.-+|+++.|.++ ...+..-.-..+...+..
T Consensus 466 --------avRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ 508 (528)
T KOG0253|consen 466 --------AVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALF 508 (528)
T ss_pred --------hhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHH
Confidence 6789999999999999999999987 333322233344444443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-06 Score=73.55 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=91.9
Q ss_pred hhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHH
Q 009413 345 ITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYI 424 (535)
Q Consensus 345 ~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (535)
..++..+..++.+++.++..+| +.+..+..+..++.+..... .+.+...+..+
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~ 59 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS----------------SNITVLIIARF 59 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh----------------ccHHHHHHHHH
Confidence 3455666666666654443322 44555666666655544432 24556677788
Q ss_pred HHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHH
Q 009413 425 LLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVL 504 (535)
Q Consensus 425 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (535)
+.+++.+...+..+.+..|..|++.|++++++.+....+|..+++.+.+.+.+. .++...+++.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~ 123 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWRAPFLFL 123 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchHHHHHHH
Confidence 889999988899999999999999999999999999999999999999987651 1234456666
Q ss_pred HHHHHHHHHHHHHhh
Q 009413 505 ALASALSLLLYVMLC 519 (535)
Q Consensus 505 ~~~~~~~~i~~~~~~ 519 (535)
+.+.+++.+..++..
T Consensus 124 ~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 124 AILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHhhcC
Confidence 666666655555443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=91.27 Aligned_cols=187 Identities=14% Similarity=0.033 Sum_probs=128.5
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
+|+...+.+.+.++..+.-.....+-...+.++-|++..++.+..........++.+++.++.||+ |||+.++.+..++
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 466677788888888887666666666777778999999999999999999999999999999995 9999999999988
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHH--hcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLIS--LGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
.+..+++........... +- -....+++.++.. .+.| ..|..+-+.+|.+|+ ..|..+.+
T Consensus 346 ~~~~~~~~~~~~l~~~~~-~~---~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~-------------~~R~aa~s 407 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFG-SW---LSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQ-------------SARSAAQS 407 (485)
T ss_pred HHHHHHHHHHHHHHHHhh-hH---HHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCc-------------cchHHHHH
Confidence 887766554432110000 00 0011233333332 2332 347888899999998 56899999
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
+.+.+..+...+.......+.+.+|- ..|.+..+..++..+..+...|
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 98888877777776666666666664 4444444444444444444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=89.64 Aligned_cols=156 Identities=11% Similarity=0.037 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.+....+..++...+.-....+...|+++.-+.+....+...+...+...+.-...+++-.| +|.|++++.+.+.+++=
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVR 286 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHH
Confidence 34444555566666666666778899985444777888887777788888999999999999 59999999999988887
Q ss_pred HHHHHhhcccccccccCccccchHH----HHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 86 LVALTSTAFSWAWSTTNKISSSSAF----LFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
..+.+.... +.+. ...+..++|+..|.+..+...++.+..|+ +.|+++.++
T Consensus 287 ~~l~a~~~~------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-------------~~~at~Q~l 341 (400)
T PF03825_consen 287 WLLYAYFSD------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-------------ELRATAQGL 341 (400)
T ss_pred HHHHHHhcC------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-------------cchHHHHHH
Confidence 777776632 2222 23345679999999999999999999998 678999998
Q ss_pred hhhH-hhhhhhhhhhhhhhhccccchh
Q 009413 162 WYFG-VCSGSLLGVTVMSYIQDTFGWV 187 (535)
Q Consensus 162 ~~~~-~~lg~~i~~~~~~~l~~~~gw~ 187 (535)
+... ..+|..+|..++|++.+++|-+
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 7764 5799999999999998877644
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-06 Score=88.28 Aligned_cols=137 Identities=9% Similarity=-0.072 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH---Hhhccccccccc
Q 009413 25 ASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL---TSTAFSWAWSTT 101 (535)
Q Consensus 25 ~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 101 (535)
....+.|+++.+|.++.+.++......++..++.++.+++.||+ ||+... +.....++.+.. ......
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~------ 297 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGVM------ 297 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhccc------
Confidence 34556788888999999999998888888888999999999995 743322 222222222211 111100
Q ss_pred CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc
Q 009413 102 NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181 (535)
Q Consensus 102 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~ 181 (535)
+.+.+....++.++|.+...|...++..|.+|+ +++...+..+...++|..+++.+++++.
T Consensus 298 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 298 -----NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------------LAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455667778888999999899999988887764 4588888888888999999999998887
Q ss_pred cccchhHH
Q 009413 182 DTFGWVLG 189 (535)
Q Consensus 182 ~~~gw~~~ 189 (535)
+...+...
T Consensus 359 ~~~~~~~~ 366 (394)
T PRK11652 359 QTGQFSLG 366 (394)
T ss_pred CCchHHHH
Confidence 66445443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=89.07 Aligned_cols=164 Identities=19% Similarity=0.138 Sum_probs=128.7
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|.....++..++...++....+.+.-|.+..+|.+..+..+.......+..++.++..++++| +|+|+++..+.++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~ 313 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLA 313 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHH
Confidence 3556666667777777776666777777777888888888888888888888889999999999 599999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++.++..+.+.. +.+..++..++.++|.+...+...++++|..+ +.|-+|..+. -|-.++...
T Consensus 314 i~~~~~~f~~~~-----------~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD--yge~~TG~R~----eGi~~s~~t 376 (467)
T COG2211 314 VGYLLLYFTPAG-----------SVVLIVVALIIAGVGTGIANPLPWAMVADTVD--YGEWKTGVRR----EGIVYSGMT 376 (467)
T ss_pred HHHHHHHhhcCc-----------chHHHHHHHHHHHHHhhccccccHHHhcchhh--HHHHHhCCCc----hhhHHHHHH
Confidence 999888887722 77888888999999999999999999999754 3444444432 366677777
Q ss_pred hHhhhhhhhhhhhhhhhccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~g 185 (535)
+..=+|..++..+.+++....|
T Consensus 377 F~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 377 FFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7777788888777776654444
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=80.34 Aligned_cols=151 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHH
Q 009413 31 YLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAF 110 (535)
Q Consensus 31 yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (535)
|+-++.++...++|.+...-...++++..+.|-++||. ||||.-++ +.+..+++-+....+ .+-.
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvt----ycitYiLsCiTKhSp----------qYkV 126 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT----YCITYILSCITKHSP----------QYKV 126 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceee----ehHHHHHHHHhhcCC----------ceEE
Confidence 34456788889999888887788889999999999995 99995443 444444444444333 6667
Q ss_pred HHHHHHHHHhcccCCchhhhh-hhhccCCCCCCCCCcCCcccccchhhhhhh-hhhHhhhhhhhhhhhhhhhcccc--ch
Q 009413 111 LFWSLCLISLGQGGYNPSLQA-FGADQLDSDDELPTTTDNQKSDKKSLFFKW-WYFGVCSGSLLGVTVMSYIQDTF--GW 186 (535)
Q Consensus 111 ~~~~~~l~g~g~g~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~i~~~~~~~l~~~~--gw 186 (535)
++++|++-|+..+..+++.-+ +++|+-++ ++-++ +-..--++- ..++..+-++++...+.++.+++ |.
T Consensus 127 LmVGR~LGGiaTsLLFSaFEsWliaEHnek-------r~Feq-qWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP 198 (454)
T KOG4332|consen 127 LMVGRVLGGIATSLLFSAFESWLIAEHNEK-------RGFEQ-QWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP 198 (454)
T ss_pred EeehhhhhhHHHHHHHHHHHHHHHHHhhhc-------cCChH-hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC
Confidence 899999999998887776544 56665433 11110 111111111 11223333444444445555555 45
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009413 187 VLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 187 ~~~f~~~~~~~~~~~~~~ 204 (535)
..+|-..+....++..++
T Consensus 199 VAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 199 VAPFDAAACFLAIGMAVI 216 (454)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 667765555444444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-06 Score=87.09 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|....++...++..............|.+..+| +....+.....+.+...++.+++++++||+ |+|+++..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 444444444445544444333333333333344 344456677777888889999999999995 999887755554444
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
..++..+.+.. +...+++..++.|++.+...+...++++|..+. +|+ +|..+ +-+..++...+
T Consensus 306 ~~~~~~~~~~~-----------~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~-~e~-~tG~r----~~g~~~a~~~f 368 (460)
T PRK11462 306 ISLAMFFVPMQ-----------ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDY-GEW-CNGKR----LTGISFAGTLF 368 (460)
T ss_pred HHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hHH-hcCCC----chHHHHHHHHH
Confidence 33333333211 233344455667887777777778888887554 222 22321 22555677778
Q ss_pred Hhhhhhhhhhhhhhhhccccch
Q 009413 165 GVCSGSLLGVTVMSYIQDTFGW 186 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~~gw 186 (535)
+..+|..+++.+++++.+..|+
T Consensus 369 ~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 369 VLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999998888877654444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-06 Score=87.15 Aligned_cols=169 Identities=15% Similarity=0.045 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.++...+...+....++......|.|+++.+|.+..+.++.......+..++..+.+++.++. +++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4566666666677777777778889999988999999999998888888888888888776553 454544333333334
Q ss_pred HHHHHHhhc--ccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 85 GLVALTSTA--FSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 85 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
+..+..... .+. +.+..+++.++.++|.+...|+..+..-. +. . ..++++.+..
T Consensus 297 g~~l~~~~~~~~~~----------~~~~~~~~~~l~~~G~~~~~p~~~~~al~--~~-------~-----~~~G~a~a~~ 352 (413)
T PRK15403 297 GLALLIVGNLLWPH----------VWLWSVLGTSLYAFGIGLIFPTLFRFTLF--SN-------N-----LPKGTVSASL 352 (413)
T ss_pred HHHHHHHHHHHccc----------cHHHHHHHHHHHHHHHHHHhHHHHHHHhc--cC-------C-----CCCcHHHHHH
Confidence 433332221 010 33345677888888888888887753322 22 1 1247777777
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVT 199 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~ 199 (535)
+.....+...++..++++..+ +-.+.|....+..++
T Consensus 353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 777777788888888887554 445566555544333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-06 Score=89.55 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=124.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhh----HHHHHHHHHHHHhhhhhhhH----HhhhhcccchHH--HHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSS----AAKTVNSWCGFTSMLPLVLA----PLADSYWDRYST--ILAFS 79 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grk~~--~~~~~ 79 (535)
+++...+.+..+.-..+.++.|..++.|.+... .+++.+.-.+...+.+++.. ++.||..+.+.. +..|+
T Consensus 277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 333344444555555566788887765554322 66777777777777777655 445542122333 36777
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++.+++.....+.... .+.+ ...++++++...++.++|.....|...+++++..|+ +.|++.+
T Consensus 357 ~l~~~~~~~~~~~~~~---~~~~-~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-------------~~~g~~~ 419 (475)
T TIGR00924 357 LFCGASFLTFAASIWF---ADAG-GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-------------RLMGQML 419 (475)
T ss_pred HHHHHHHHHHHHHHhh---cCCC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------------HHHHHHH
Confidence 7777777666543100 0000 011888999999999999999999999999999998 6799999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
+.++....+|..+++.+.....+..+|...|...++..++..++.+...+
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888887766667877777666655555444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-07 Score=96.66 Aligned_cols=148 Identities=15% Similarity=0.201 Sum_probs=115.0
Q ss_pred cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHH
Q 009413 339 ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFW 418 (535)
Q Consensus 339 ~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (535)
+.++....+...+..|+.+.+.+++-|+ ..+.+|.++..++.+..++. ...|.
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs----------------~~Fwq 123 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFS----------------NHFWQ 123 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHH----------------HHHHH
Confidence 4455566677888889998865544332 56788888888887766653 35677
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhH
Q 009413 419 LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLD 498 (535)
Q Consensus 419 ~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 498 (535)
+++.=.+.|+||....|..++++++.+|.+.|++..+++++.-.+|+.+|-..+..+.+.+ .+++
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------------~~Wr 188 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------------FWWR 188 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------------cceE
Confidence 8888899999999999999999999999999999999999999999999988887776533 1135
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccc
Q 009413 499 LYYWVLALASALSLLLYVMLCKFFKSRTDN 528 (535)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 528 (535)
+.|++.+++.++.+++..++.++.+++..+
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 567777888888888877777766654333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-05 Score=74.42 Aligned_cols=146 Identities=11% Similarity=-0.075 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
|-.+.....++.+.. +.|.. +.-.+.+++.+|+|.+|...+..+-.++..+ .++.|.+.|++ |.+.++.+|.+...
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~ 77 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGF 77 (250)
T ss_pred hhhHHHHHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 333343444444443 33333 4556788899999999999999999999886 58889999995 99999999999999
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+|...+....... +. +.+.+.+.+..++.+.+.+.+.........+.||+ .||.+.++.-
T Consensus 78 ~GY~~~~l~~~~~-i~-----~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~--------------~RG~vvgilk 137 (250)
T PF06813_consen 78 VGYGLLWLAVSGR-IP-----SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR--------------SRGTVVGILK 137 (250)
T ss_pred HHHHHHHHHHhCc-cC-----ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc--------------ccCceehhhh
Confidence 9988777664221 00 01566777667777777666655555556688886 4788888866
Q ss_pred hHhhhhhhhh
Q 009413 164 FGVCSGSLLG 173 (535)
Q Consensus 164 ~~~~lg~~i~ 173 (535)
....+++.+=
T Consensus 138 ~~~GLSaai~ 147 (250)
T PF06813_consen 138 GFFGLSAAIF 147 (250)
T ss_pred HHHHhHHHHH
Confidence 5555554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-05 Score=76.87 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=112.3
Q ss_pred hhhhhhHHHHHHHhhhhcCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 19 FAFKGVASNLVTYLTDVVKMSN--SSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSW 96 (535)
Q Consensus 19 ~~~~~~~~~~~~yl~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~ 96 (535)
..........+.+.. +.+.+. ...++..+.+.+...++.++.|+++||+ |||+.+..+.....++.+.+.+... .
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~ 92 (338)
T COG0477 16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-V 92 (338)
T ss_pred HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-c
Confidence 333333344444444 455444 5789999999999999999999999995 9998888888766666566666552 0
Q ss_pred cccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh-Hhhhhhhhhhh
Q 009413 97 AWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF-GVCSGSLLGVT 175 (535)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~i~~~ 175 (535)
+...+++.|+++|++.+...+...+++.|.+|+ . .+|+...+.... ...+|..++|.
T Consensus 93 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T COG0477 93 ----------GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-------A-----TERGLAVGLVTLGAGALGLALGPL 150 (338)
T ss_pred ----------hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------h-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998773 0 247778877777 57788888887
Q ss_pred hhhhhccc--cchhHHHHHHHHHH
Q 009413 176 VMSYIQDT--FGWVLGFAIPTIAM 197 (535)
Q Consensus 176 ~~~~l~~~--~gw~~~f~~~~~~~ 197 (535)
+++.+... .+|+..|.+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 151 LAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 77666543 56888665554433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-06 Score=85.34 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=126.7
Q ss_pred hhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhccc--chHHHHHHHHHHHHHHHHHHhhccc
Q 009413 18 RFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD--RYSTILAFSFIYVVGLVALTSTAFS 95 (535)
Q Consensus 18 ~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rk~~~~~~~~~~~~~~~~~~~~~~~ 95 (535)
+.+.-..=+.++.+..+++..+..+.|......++.+.++..+.|.++||+ + |-..-..+++...+......++.
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~-- 359 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT-- 359 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh--
Confidence 333333446778888889997777999999999999999999999999996 9 55555555555555555666666
Q ss_pred ccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhh
Q 009413 96 WAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVT 175 (535)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 175 (535)
++..+++-++..+++.+..-.+........... ++.+.-+..+..+++...+..+|..+||.
T Consensus 360 -----------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~-------rh~s~~~vYGsVyaIad~a~sla~a~GP~ 421 (464)
T KOG3764|consen 360 -----------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDP-------RHVSGFNVYGSVYAIADAAFSLAYAIGPT 421 (464)
T ss_pred -----------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcch-------hhccccceeeeHHHHHHHHHHHhhhcccc
Confidence 788888888888888777776666666666555 33321125789999999999999999999
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHhcc
Q 009413 176 VMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGS 208 (535)
Q Consensus 176 ~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 208 (535)
++|.+.+.+|++|...+-++..++-.-++...+
T Consensus 422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred ccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887776666555433333333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-05 Score=84.37 Aligned_cols=180 Identities=13% Similarity=0.040 Sum_probs=115.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhh--hcCCCh------hhHHHHHHHHHHHHhhhhhhh----HHhhhhcccchHHHHHHH
Q 009413 12 VIAGKERFAFKGVASNLVTYLTD--VVKMSN------SSAAKTVNSWCGFTSMLPLVL----APLADSYWDRYSTILAFS 79 (535)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~yl~~--~l~~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grk~~~~~~~ 79 (535)
+..+.....||.+...++.++.. ..+.+. ...++..+.-.+...++.++. +++.||+ +..+.+..|+
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~ 357 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGM 357 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHH
Confidence 33445556677777777777553 111221 124555555565556666665 6666663 6678888999
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++.+++.+.......... +.+.. +.++++...+++++|.+...|...+++.+..|+ +.|++.+
T Consensus 358 ~l~~l~f~~l~~~~~~~~--~~~~v--s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------------~~rg~~~ 420 (500)
T PRK09584 358 VLCSGAFLVLPLGAKFAN--DAGIV--SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------------RLMGFIM 420 (500)
T ss_pred HHHHHHHHHHHHHHHhcC--CCCcc--CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------------HHHHHHH
Confidence 999999877766542110 11112 677889999999999999999999999999998 7899999
Q ss_pred hhhhhHhhhhhhhhhhhhhhhc----------cccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQ----------DTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~----------~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
+.+.+...+|+.++..+.+... ...+++..|...++..++..++++...+
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988777777776655553221 1123566676655544433333344333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-06 Score=89.41 Aligned_cols=136 Identities=11% Similarity=-0.059 Sum_probs=106.2
Q ss_pred hhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHH
Q 009413 33 TDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLF 112 (535)
Q Consensus 33 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (535)
.+.+|+|+.+.|.......++..++....+++.+| ++.|+++..+.++.+++..........+.. .. ++ .+.+...
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~-~~-gi-~~~~~~~ 355 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNL-AF-GI-SDEVFVL 355 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccc-cc-CC-CCeeeee
Confidence 45799999999999999999999999999999999 599999999998888876554322211100 00 00 0233445
Q ss_pred HHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc
Q 009413 113 WSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG 185 (535)
Q Consensus 113 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g 185 (535)
...++.+++.+........++.+..|+ +.+++.++.+....++|..+++.+++++.++.|
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~-------------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCPS-------------GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCCC-------------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556777888788788889999999998 567999999999999999999999999987776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=84.32 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=77.5
Q ss_pred HHHHHHHhhhhHHHh-hhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHH
Q 009413 348 SIILLMPLYDKILIP-FIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILL 426 (535)
Q Consensus 348 ~~~v~~~l~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 426 (535)
...+..++.+++.|+ +++| +.+.++.++..++.+.+.+.. .....+.+..++.
T Consensus 62 ~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~---------------~~~~ll~~~~~l~ 115 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL---------------LKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc---------------cchhHHHHHHHHH
Confidence 344444566666554 3333 667888888888887766531 1122344567778
Q ss_pred HHHHHHHhhhhhhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 427 GISDIFTVIGMQEFFYNEVPVR--MRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 427 g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
++|.+...|...+++.|.+|++ .|+.+.+.++...++|..+|+.+.|++.+
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977 55888999999999999999999999876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-05 Score=80.56 Aligned_cols=195 Identities=10% Similarity=0.012 Sum_probs=139.3
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhh-hcCCCh------hh----HHHHHHHHHHHHhhhhhhhHHhhhhcccc
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTD-VVKMSN------SS----AAKTVNSWCGFTSMLPLVLAPLADSYWDR 71 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~------~~----~~~~~~~~~~~~~~~~~~~G~laDr~~Gr 71 (535)
.||.++.++.++++.+++++.+..+.+.|..+ .+|-++ .+ ..+....+.+...+.+++.-++.+| +|+
T Consensus 256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~ 334 (477)
T TIGR01301 256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGA 334 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 47889999999999999999999998888874 344322 11 2344444555556777778889999 594
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhccccc----------ccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCC
Q 009413 72 -YSTILAFSFIYVVGLVALTSTAFSWA----------WSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSD 140 (535)
Q Consensus 72 -k~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~ 140 (535)
|++...+.++.+++.....+...... ...+... ..+..++.-.+.|+..+.....-++++++..++
T Consensus 335 ~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~- 411 (477)
T TIGR01301 335 GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTG--IKASALIVFAILGIPLAITYSIPFALASIRSSN- 411 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchh--hHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc-
Confidence 77779998888888777765432000 0000000 135566667778999999999999999998885
Q ss_pred CCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc--hhHHHHHHHHHHHHHHHHHHhccccc
Q 009413 141 DELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG--WVLGFAIPTIAMVTSTAFFSFGSQIY 211 (535)
Q Consensus 141 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~ 211 (535)
++ ++.|..+++++.++.+.+++.....|.+.+..| -.+.+.+.++..+++.++.++..|+.
T Consensus 412 ------~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 412 ------LG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred ------cC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22 346899999999999999999887777554444 45678888888888777777766653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0029 Score=65.27 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=100.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhhcC------C-----------------ChhhHHHHHHHHHHHHhhhhhhhHHhh
Q 009413 9 MLIVIAGKERFAFKGVASNLVTYLTDVVK------M-----------------SNSSAAKTVNSWCGFTSMLPLVLAPLA 65 (535)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~-----------------s~~~~~~~~~~~~~~~~~~~~~~G~la 65 (535)
.-.+.-+|+++.|-.+.+-..--+.++.+ . +.--.+.+.-+-.+-+.+..+.+-+..
T Consensus 4 ~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi 83 (402)
T PF02487_consen 4 AFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFI 83 (402)
T ss_pred HHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhh
Confidence 34567788888876665555444441111 0 011123355555556667777777888
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCC
Q 009413 66 DSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPT 145 (535)
Q Consensus 66 Dr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~ 145 (535)
+|. .-+.=+....++.+++.++.++++ +.+.-+++.++.+++.|......-++.+ .+++
T Consensus 84 ~~v-~y~~Ri~~~~~l~~~g~l~va~~~-------------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~------ 142 (402)
T PF02487_consen 84 HRV-PYWIRILICVALSAAGMLLVAFSP-------------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK------ 142 (402)
T ss_pred hhc-cchHHHHHHHHHHHHHHhheeecc-------------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc------
Confidence 884 644445555667778888888776 8888889999999999998888887755 4454
Q ss_pred cCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc--hhHHHHHHHHHHHHHHHHHHhccc
Q 009413 146 TTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG--WVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 146 ~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
...+.+..+...++++|+..=..+.. .| .|..+.+.....++-.+.+++..+
T Consensus 143 -----------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 143 -----------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred -----------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23455555556666666544333333 44 455555554444434444444444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.002 Score=66.44 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=114.3
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-cCCChhhHHHH-HHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDV-VKMSNSSAAKT-VNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~s~~~~~~~-~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
+...++|...|+-.+- =.-+++.+|+.+. .|++..|...- .=...-.+....++...+.|.+ |.|++++.+.+..
T Consensus 5 ~~~~llc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~ 81 (412)
T PF01770_consen 5 KITLLLCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSY 81 (412)
T ss_pred HHHHHHHHHHHHHhcC--CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4444455554444332 2337789999886 89999888633 3333555667788889999995 9999999999888
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.+...++.+.. +...+-+.-+..|++.+. ..+.++++-...|+ ++..++.+..
T Consensus 82 i~t~~lll~~~-------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------------~~yq~vts~~ 134 (412)
T PF01770_consen 82 IITWLLLLFGT-------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------------EHYQKVTSYT 134 (412)
T ss_pred HHHHHHHHHHC-------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------------HHHHHHHHHH
Confidence 88888888887 899999999999988765 35556666666665 3344555555
Q ss_pred hhHhhhhhhhhhhhhhhh--ccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 YFGVCSGSLLGVTVMSYI--QDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l--~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
..+.-+|..++..++=.+ ....++.....+......+++++.++.
T Consensus 135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555444444443332222 234456777777776666665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=81.62 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhhHHHhh-hhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHH
Q 009413 347 VSIILLMPLYDKILIPF-IHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYIL 425 (535)
Q Consensus 347 ~~~~v~~~l~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 425 (535)
....+..++.+++.|++ ++| +.+.+|.++..++..++.... .+...+.+...+
T Consensus 56 ~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~---------------~~~~~~~l~l~l 109 (493)
T PRK15462 56 SLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE---------------IHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh---------------cchhHHHHHHHH
Confidence 33344445666665554 332 456778888777765554311 111223334445
Q ss_pred HHHHHHHHhhhhhhhhhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHH
Q 009413 426 LGISDIFTVIGMQEFFYNEVPVR--MRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWV 503 (535)
Q Consensus 426 ~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (535)
..+|.+...+...+++.|.+|++ .|.++.++++...++|+.++|.+.+++.+. .+++..|.+
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----------------~Gw~~~F~i 173 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE----------------YSWAMGFGL 173 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh----------------hChHHHHHH
Confidence 55677777777788999999975 799999999999999999999999998751 224556666
Q ss_pred HHHHHHHHHHHHHHhh
Q 009413 504 LALASALSLLLYVMLC 519 (535)
Q Consensus 504 ~~~~~~~~~i~~~~~~ 519 (535)
.+...+++.+.++...
T Consensus 174 aaigm~l~li~~~~~~ 189 (493)
T PRK15462 174 AAVGMIAGLVIFLCGN 189 (493)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555555554433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.03 E-value=3e-05 Score=60.59 Aligned_cols=71 Identities=20% Similarity=0.057 Sum_probs=58.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
+-...++...++-.+.++++.|++ +.|+|..++|.+.+...+...+++++.|+++||+ ||+|.++....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 344455555666677899999998 5999999999999999999999999999999995 9998877665543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=82.94 Aligned_cols=171 Identities=11% Similarity=-0.036 Sum_probs=134.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHH
Q 009413 9 MLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVA 88 (535)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~ 88 (535)
+.++..++..+..-.+.+++--+++ +.+-.+..-|.....-..+-...-++.++|..|+ |+-+++.+++....+=.+.
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~ 452 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLY 452 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHH
Confidence 3455566666666666666666665 5666666666444444566777788889999995 9999999999999888888
Q ss_pred HHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh-Hhh
Q 009413 89 LTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF-GVC 167 (535)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ 167 (535)
++..+ |+|..+..-+++|+..+..+.++.+|++...|+ +.|..+.++.+. .-.
T Consensus 453 ~S~L~-------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------------~l~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 453 YSYLQ-------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------------GLRATAQGLLQGIFHG 506 (618)
T ss_pred HHHhc-------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------------cchHHHHHHHHHHhcc
Confidence 88888 899999999999999999999999999999999 556777776544 347
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
+|-.+|.+++|.+.+.+|=+..|.+.++.+++.++.....
T Consensus 507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999998999988888777665554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=72.64 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=136.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 009413 10 LIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVAL 89 (535)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~ 89 (535)
.....+...+++++-=..+-+|--+.||+|..+...+...+..+..++-...|++..|..++|++...+..+.+++..+.
T Consensus 213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 34444555566666667788898899999999999999999999999999999998855688898888888888877666
Q ss_pred HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhh
Q 009413 90 TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSG 169 (535)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 169 (535)
..+.... +.+.+..+.++.|+|.|.+.....+...|..++ .+.+...+.+.....++
T Consensus 293 i~a~~~~----------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~-------------~~aG~~mG~WGaaQA~A 349 (403)
T PF03209_consen 293 ILAGPLG----------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA-------------GRAGLFMGAWGAAQAIA 349 (403)
T ss_pred HHHHhcc----------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------------cchhHHHHHHHHHHHHH
Confidence 6554332 778899999999999999999999999999877 34688999999999999
Q ss_pred hhhhhhhhhhhcc----------ccchhHHHHHHHHHHHHHHHHH
Q 009413 170 SLLGVTVMSYIQD----------TFGWVLGFAIPTIAMVTSTAFF 204 (535)
Q Consensus 170 ~~i~~~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~ 204 (535)
..+|-.++|.+.| ..+|...|.+-.+.++.++.++
T Consensus 350 ~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 350 RGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999888886532 2357777777776666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00019 Score=78.07 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=80.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHH
Q 009413 375 TVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGF 454 (535)
Q Consensus 375 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 454 (535)
++++.+.++.++..++.++.++.... ....+.+.+.+..++.|+|.+...+.......+.+| +.||.++
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~~----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~ 157 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQE----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVV 157 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcc----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHH
Confidence 33467788999999988877763110 001356777788889999999888887788888898 5699999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 009413 455 ALYTSVFGVGSFLSALLI-TVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520 (535)
Q Consensus 455 g~~~~~~~lg~~lg~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (535)
|+.....++|+.+.+.+. .++.+ +...+++.++.+.++..++.+...+
T Consensus 158 Gi~~~~~gLGsaI~~~l~~~l~~~------------------~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 158 AIMKTFTGLGSAILGSIQLAFFSD------------------NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999997654444 44332 1244556666666655555444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.014 Score=61.27 Aligned_cols=193 Identities=9% Similarity=-0.123 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGL 86 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~ 86 (535)
.+.+....++.++.-=+.---.+.|+.+-+.-+---.+...-.-.+...++.+..|...||. .|.+++..++++--++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 34445555555554444444456777755544544455555555677888889999999996 99999888876543322
Q ss_pred HHH-----HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 87 VAL-----TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 87 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
... ............+.. ....+.+..++..+..=.......+.=-|+... -..+++..+.+..+.
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~Las~~~~iavERDWVvv-------i~~~~~~~La~~NA~ 153 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWL--FIALFALLILLGAIERLASIANTIAVERDWVVV-------IAGGDPGALARMNAT 153 (432)
T ss_pred HHHHHHHHHHHhCCccccccchH--HHHHHHHHHHHHHHHHHHHhhhhheeccchhhh-------hcCCChhhHHHHHHH
Confidence 111 111111100000000 111122222222222222222233333444333 111112456777766
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
..=.=.+--+++|++.|.+....+.+....+.+...++++.+-++...
T Consensus 154 mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 154 MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667788899999999998889888877777777777666444443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00023 Score=72.18 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=108.0
Q ss_pred hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 009413 23 GVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTN 102 (535)
Q Consensus 23 ~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (535)
.+-++++.|+.+..|.+..+++..++.+-.+.++++.++-++-.|+ -..|.+....++-.+-.+..++..
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~--------- 323 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG--------- 323 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 4458899999988999999999999999999999999999999895 888877766544433334444443
Q ss_pred ccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 103 KISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 103 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+ ..-+.+.++.|+..+..+|.+.+...+..|. . ++..|..-....+|+.+-|.+.|++.|
T Consensus 324 ----g-~v~~~~l~~ig~F~simfPTIfslal~~l~~-------~--------ts~~s~~l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 324 ----G-VVALYALFLIGLFNSIMFPTIFSLALKNLGE-------H--------TSVGSGLLVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred ----C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc-------c--------ccccceeeeeheecchHHHHHHHHHHH
Confidence 4 3444666888999999999999999998886 2 223333334567899999999999999
Q ss_pred ccchhHHHH
Q 009413 183 TFGWVLGFA 191 (535)
Q Consensus 183 ~~gw~~~f~ 191 (535)
+.|-+..+.
T Consensus 384 ~~g~~~~~~ 392 (422)
T COG0738 384 MFGIQLTFL 392 (422)
T ss_pred hhhhHHHHH
Confidence 999887766
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.1e-05 Score=80.21 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYSTILAFSFIY 82 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~~~~~~ 82 (535)
.+|..++..+|.....|++..++|.|+++..|+|..++......+.++..++.+++|+++||. +.+|..+.....++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 478889999999999999999999999986779999999999999999999999999999992 25666666655554
Q ss_pred HH-HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 83 VV-GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
.+ +.+.+.... +......+.+....+.+...+....-..+...+ + .+|-...+.
T Consensus 354 ~~~g~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g-------~-----~k~~~~~~~ 408 (495)
T KOG2533|consen 354 AIIGAISLLAAA-------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAG-------N-----TKALTTVSA 408 (495)
T ss_pred HHHHHHHHHhhc-------------cchHHhHHHHhcchhhHHHHHHHHhhccccccc-------h-----HHhHHHHhh
Confidence 43 334333333 222232322222333333334444444554433 1 234444444
Q ss_pred hhhHhh-hhhhhhhhhhhhhccccchhHHHHHHHH
Q 009413 162 WYFGVC-SGSLLGVTVMSYIQDTFGWVLGFAIPTI 195 (535)
Q Consensus 162 ~~~~~~-lg~~i~~~~~~~l~~~~gw~~~f~~~~~ 195 (535)
...+.+ .|.+.+++.-+.....++|...|.....
T Consensus 409 ~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 409 IIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred hhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 444443 3444444444555566788888844443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=77.69 Aligned_cols=149 Identities=17% Similarity=0.312 Sum_probs=101.2
Q ss_pred ccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009413 326 MKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 405 (535)
+..++++ .-...++...+.+...+..|+.+++.|-++|| ..++.+.++..++.++.+.
T Consensus 70 I~~diG~--~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~at--------- 127 (599)
T PF06609_consen 70 INADIGG--SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCAT--------- 127 (599)
T ss_pred HHHhcCC--CccchHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhc---------
Confidence 4445543 33445666777888888888888887776665 4567788888888887765
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGR 485 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~ 485 (535)
..+...++....+.|+|.+..... ...+.|..|.+.|+.+.++.....-.....++.+...+.. ..
T Consensus 128 -------A~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~ 193 (599)
T PF06609_consen 128 -------AQNMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HS 193 (599)
T ss_pred -------CCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CC
Confidence 346678888999999997776654 4568999999999888877665554555555655554432 12
Q ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 009413 486 SWFSDDMKEARLDLYYWVLALASALSLLLYVMLCK 520 (535)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (535)
+| .+.|++.+.+..++.+..+++.+
T Consensus 194 ~W----------Rw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 194 GW----------RWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred Cc----------chHHHHHHHHHHHHHHHHHHHhC
Confidence 33 56666666766666655444443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.7e-05 Score=82.16 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=90.6
Q ss_pred ccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH--Hhhhh----------
Q 009413 338 PATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK--RLEMN---------- 405 (535)
Q Consensus 338 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~---------- 405 (535)
.+.+.+...++..+..++.+++ .+|. .+++.+.+|.++++++.++.++.... +++..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 4455556666666666666554 3332 23366788899999988887664311 00000
Q ss_pred -----ccC-C---------------CCc--cchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 406 -----QQY-S---------------ETV--PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFG 462 (535)
Q Consensus 406 -----~~~-~---------------~~~--~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 462 (535)
-+. + +.. ...+..+++..++.|+|.+...+...+++.|.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 0 000 11345667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 009413 463 VGSFLSALLITVIEA 477 (535)
Q Consensus 463 lg~~lg~~~~~~i~~ 477 (535)
+|..+|+.+++++.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0068 Score=61.00 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 415 SIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 415 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
.....+..+.+.+......+.+.+++-++.+|+.+.|+.|.+-+...++|+---..+..++.|
T Consensus 368 ~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 368 YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 344556678888888888889999999999999999999999999998887777777777666
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.84 E-value=3e-07 Score=97.51 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=110.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
+|+....+....+..+..+....+..+++.+..+.++. -.......+...++.+++.++.||+ |||+.++.+.++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~ 327 (451)
T PF00083_consen 251 RKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMA 327 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccc
Confidence 34555566666666666655555556666667777766 2222233455667777888999995 99999999988887
Q ss_pred HHHHHHH-hhcccccccccCccccchHHHHHHHHHHH-hcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 84 VGLVALT-STAFSWAWSTTNKISSSSAFLFWSLCLIS-LGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
++.+.+. ....... +.... +. ..++...+.. ....+..+....+.+|.+|. +.|+++.++
T Consensus 328 ~~~~~~~~~~~~~~~--~~~~~--~~-~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-------------~~R~~~~~~ 389 (451)
T PF00083_consen 328 ICSLILGIIFFLGVS--SSSWW--SI-LSIVFLALFFAFFSLGWGPLPWIYTAELFPT-------------KVRSTGIGL 389 (451)
T ss_pred ccccccccccccccc--ccccc--cc-ccceeeeeccccccccccccccccccccccc-------------ccccccccc
Confidence 7766664 1110000 00000 11 1112222221 22224446667889999999 678999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
.+....++..+++.+..++.+..+-...|.+.....++..+..++
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 988889999999888888777666233444444444444333333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.03 Score=59.37 Aligned_cols=159 Identities=8% Similarity=0.020 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCC-----hhhHHHHHHHHHHHHhhh-hhhhHHhhhhcccchHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMS-----NSSAAKTVNSWCGFTSML-PLVLAPLADSYWDRYSTILA 77 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grk~~~~~ 77 (535)
.|.++......+|-.+.|+.. --++|.+..+ .....++-+...+...+. .++-+++++|+ +|++.+-.
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 355666666666666665533 4456666663 345667766665544444 78889999995 99998887
Q ss_pred HHHHHHHHHHHHHhhcccc-cc------cccCcc--cc---------chHHHHHHHHHHHhcccCCch-hhhhhhhccCC
Q 009413 78 FSFIYVVGLVALTSTAFSW-AW------STTNKI--SS---------SSAFLFWSLCLISLGQGGYNP-SLQAFGADQLD 138 (535)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~------~~~~~~--~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~i~~~~~ 138 (535)
....+.....+.++.-.|. +. .+.... +. +.|...+.-+...+-.....+ .-.++..|.+.
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t 159 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT 159 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7766666655555442211 00 000000 00 011111111222332233334 56789999988
Q ss_pred CCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc
Q 009413 139 SDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ 181 (535)
Q Consensus 139 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~ 181 (535)
. ++-.|.++.+..+.|+|.++++.+..++.
T Consensus 160 ~-------------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 160 I-------------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 45688999999999999999998888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=75.47 Aligned_cols=153 Identities=11% Similarity=-0.058 Sum_probs=89.6
Q ss_pred CcchHHHHHHHHHHhhhhhh-hhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH
Q 009413 3 LSKSCIMLIVIAGKERFAFK-GVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI 81 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~ 81 (535)
.+|+....+.+..+..++.+ .+..+.+.. .+..+.+... .+......+...++..++..+.||+ |||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34555555566666655554 444444444 4466666443 5555555667777788889999995 999999999999
Q ss_pred HHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 82 YVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
+.++.++++..............+.....+....+.......+..|....+.+|.+|. +.|+.+.++
T Consensus 369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------------~~r~~~~s~ 435 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------------RLRSKGASL 435 (513)
T ss_pred HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------------hHHhhhHHH
Confidence 9999887775532211100000000122222222223333344456667788999998 567777777
Q ss_pred hhhHhhhhhh
Q 009413 162 WYFGVCSGSL 171 (535)
Q Consensus 162 ~~~~~~lg~~ 171 (535)
......+...
T Consensus 436 ~~~~n~~~~~ 445 (513)
T KOG0254|consen 436 AVAVNWLWNF 445 (513)
T ss_pred HHHHHHHHHH
Confidence 5554444333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=68.26 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH
Q 009413 378 QRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY 457 (535)
Q Consensus 378 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 457 (535)
+.+.++++..++..+++.+. .+.+.+.+.-++.|++++... +.+.++.+.+|++.|++++|.+
T Consensus 93 ~vL~l~~l~Wsl~t~L~~fa----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~ 155 (511)
T TIGR00806 93 PVLVLQALSFVCVWLLLLLG----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS 155 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence 56777888888877777763 367888899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009413 458 TSVFGVGSFLSALLITVIE 476 (535)
Q Consensus 458 ~~~~~lg~~lg~~~~~~i~ 476 (535)
+....+|..+++.+++++.
T Consensus 156 ~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 156 RAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=70.30 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=87.3
Q ss_pred cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHH
Q 009413 339 ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFW 418 (535)
Q Consensus 339 ~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (535)
+.+.+...+...+..|+.+.+.++++|| ..+.++.+..++++++.+. +.+...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRk-----------pvll~c~~~va~s~ll~~~----------------S~~F~a 123 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRK-----------PVLLACLIGVALSYLLWAL----------------SRNFAA 123 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCch-----------HHHHHHHHHHHHHHHHHHH----------------HHHHHH
Confidence 4444555677788888888877776665 4567788888887777766 234445
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 419 LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 419 ~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
++..=++.|+..+...+.- ++++|.++++.|+.+++......++|-++||.++++...
T Consensus 124 fv~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 124 FVLARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5666788888887766655 899999999999999999999999999999999998776
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=66.88 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhc---ccchHHHHHH-HHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSY---WDRYSTILAF-SFI 81 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~~~~~-~~~ 81 (535)
.++.+..+.+...+++-.=.+++++|++ .+|.+..-.+.+-..-.+...+.+|+.|..+||. |||||-++.. .+.
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 4566677777777777777788999997 7999988888888888899999999999999975 7888866555 444
Q ss_pred HHHHHHHHHhhccccc-ccccCc---cccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhh
Q 009413 82 YVVGLVALTSTAFSWA-WSTTNK---ISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSL 157 (535)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~ 157 (535)
.+++..+..++.+-.. ..+... -.-....++++.-+.=+..-......-++.+|...+ .++ ++|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~-------d~~---~~~-- 179 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG-------DAK---KTR-- 179 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC-------hhh---hhc--
Confidence 5666666666643321 111111 000344555665665566656667778999999876 221 223
Q ss_pred hhhhhhhHhhhhhhhhhhhhhhh
Q 009413 158 FFKWWYFGVCSGSLLGVTVMSYI 180 (535)
Q Consensus 158 ~~~~~~~~~~lg~~i~~~~~~~l 180 (535)
+.+++.+...+|..+|...+++.
T Consensus 180 Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cchhHHHHHHhcceeeeeccccc
Confidence 88888889999999998887754
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0047 Score=55.23 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhccc
Q 009413 44 AKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQG 123 (535)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g 123 (535)
....+.......+.+++...+.++ +|.|++++++.+.+.+-..... -+ +.+.++.+-++.|++.+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-~~-------------~~~~l~~~s~l~G~~~a 104 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF-YP-------------NSYTLYPASALLGFGAA 104 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-hh-------------hHHHHHHHHHHHhhhhH
Confidence 344444456667777888889999 5999999999988875544433 33 77889999999999999
Q ss_pred CCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhh
Q 009413 124 GYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTV 176 (535)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~ 176 (535)
..+.+...++.+..++ +.|++..+++....+.+.++|.++
T Consensus 105 ~lW~aqg~ylt~~s~~-------------~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 105 LLWTAQGTYLTSYSTE-------------ETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HhhHhhhHHHHHcCCH-------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987665 456677776666666666666444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00056 Score=70.36 Aligned_cols=178 Identities=15% Similarity=0.011 Sum_probs=118.8
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhH--------HHHHHHHHHH-HhhhhhhhHHhhhhcccchH
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSA--------AKTVNSWCGF-TSMLPLVLAPLADSYWDRYS 73 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~--------~~~~~~~~~~-~~~~~~~~G~laDr~~Grk~ 73 (535)
|.|.+...+...|...+++|+.-.+...-++ ..++.+++. +......... +..+..+...+.|+ +|||+
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~ 379 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKY 379 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHH
Confidence 4466677778888888888888766655554 344433222 2222222222 23366677888999 59999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCccccc
Q 009413 74 TILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSD 153 (535)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 153 (535)
.-+.+++++++..+.++....... ++.+ -....-+..++.-+ +-......+-+|.||. +
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~~~~--~~~G---f~v~y~l~~ff~NF---GPn~ttfivpaE~FPa-------------r 438 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYNQLE--NTIG---FVVLYSLTFFFGNF---GPNATTFIVPAEIFPA-------------R 438 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCccccc--ccCc---eeehHHHHHHHHhc---CCCceeEEeehhhchH-------------H
Confidence 999999999988888777653211 1111 11122222233333 3334556778899998 6
Q ss_pred chhhhhhhhhhHhhhhhhhhhhhhhhhcc-----ccchhHHHHHHHHHHHHHHHH
Q 009413 154 KKSLFFKWWYFGVCSGSLLGVTVMSYIQD-----TFGWVLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 154 ~r~~~~~~~~~~~~lg~~i~~~~~~~l~~-----~~gw~~~f~~~~~~~~~~~~~ 203 (535)
-|+...++.-.+.-.|+++|.....++.+ ..|.+..|++....+++..+.
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~ 493 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF 493 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe
Confidence 79999999999999999999999888888 678889998888777666544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=69.37 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=122.8
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHH-HHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhH-HhhhhcccchHHHHHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVAS-NLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLA-PLADSYWDRYSTILAFS 79 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grk~~~~~~~ 79 (535)
|++|.++.++...+.....-.+-.. .+..|++..++++..+.+...+.......+.+++.. .+.-. +|-|+++..|+
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl 315 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL 315 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence 6778887777766665554433222 446788889999999999999999999999998887 56666 69999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 80 FIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
+...+.....+++. +.+.++....+.++. +...|...++++.+..+ +++++++
T Consensus 316 ~~~~~~~~~~af~~-------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~-------------~e~g~v~ 368 (463)
T KOG2816|consen 316 LSEFLQLLLFAFAT-------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSP-------------EEQGKVF 368 (463)
T ss_pred HHHHHHHHHHHHhc-------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccc-------------ccccchh
Confidence 99999999999998 777777777776654 66778999999998887 5789999
Q ss_pred hhhhhHhhhhhhhhhhhhhhh
Q 009413 160 KWWYFGVCSGSLLGVTVMSYI 180 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l 180 (535)
++.+....+..+++|.+-+.+
T Consensus 369 ~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999998887765
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=49.50 Aligned_cols=65 Identities=15% Similarity=-0.017 Sum_probs=58.5
Q ss_pred HHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhc
Q 009413 28 LVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTA 93 (535)
Q Consensus 28 ~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~ 93 (535)
+.+.++++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+++...+..+.+++..
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666779999999999999999999999999999999984 888999999999999988888876
|
Note that many members are hypothetical proteins. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0094 Score=64.59 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=94.2
Q ss_pred cchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHH
Q 009413 343 SAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQ 422 (535)
Q Consensus 343 ~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (535)
++..++.+++..+.+.+.++++|| +.+..++++..+.-+..++ ..+.+.+++.
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk-----------~~~~~~~~~~~i~~~~~a~----------------a~~~~~~~~~ 177 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRK-----------PVLLVSLLLFIIFGILTAF----------------APNYWMFLIF 177 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccH-----------HHHHHHHHHHHHHHHHHHH----------------hCcHHHHHHH
Confidence 334455555555555544443333 4567777777776666665 4578899999
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHH
Q 009413 423 YILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYW 502 (535)
Q Consensus 423 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (535)
-++.|++........+.+..|..+++.|+.+..+ ......++.+++...+++.. + +...++
T Consensus 178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~----------Wr~~~~ 238 (521)
T KOG0255|consen 178 RFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------D----------WRWLFW 238 (521)
T ss_pred HHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------h----------HHHHHH
Confidence 9999999999999999999999999999999999 88888899999988888764 2 355666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 009413 503 VLALASALSLLLYVMLC 519 (535)
Q Consensus 503 ~~~~~~~~~~i~~~~~~ 519 (535)
+......+..+. +++.
T Consensus 239 ~~~~~~~~~~~~-~~l~ 254 (521)
T KOG0255|consen 239 IISIPSGLFLLL-WFLP 254 (521)
T ss_pred HHHHHHHHHHHH-HHcc
Confidence 665555555444 3443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.009 Score=61.61 Aligned_cols=183 Identities=18% Similarity=0.146 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccch-HHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRY-STILAFSFIYV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-~~~~~~~~~~~ 83 (535)
|.+.++.+........+|+....+-.-+. .-|.++..+|++.....++.+++..++|.++||. ... ++.+.......
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~ 343 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL 343 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence 45566666666666666666555543333 5677778999999999999999999999999995 543 34444444444
Q ss_pred HH-HHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VG-LVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
++ +.+......+. ..+.++..-.+.|.+..+..|...-+..|..-| ..+ +...+..
T Consensus 344 v~~~~l~~~t~~~~----------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP-------v~E------~tSsGll 400 (480)
T KOG2563|consen 344 VGTLMLLTCTLFLG----------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP-------VAE------GTSSGLL 400 (480)
T ss_pred HHHHHHHHhhccCC----------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccc-------cCC------cccceeE
Confidence 44 22222222221 445566666777877778888777777775443 111 2333444
Q ss_pred hhHhhhhhhhhhhhhhhhccccc----hhHHHHHHHHHHHHHHHHHHhcccccc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG----WVLGFAIPTIAMVTSTAFFSFGSQIYR 212 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g----w~~~f~~~~~~~~~~~~~~~~~~~~~~ 212 (535)
....++-+++=.++.+...+..+ |...-+......++...+..+.+++++
T Consensus 401 ~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 401 NLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred EeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 44444444444455566665555 443333333344444455555555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.035 Score=53.78 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHH
Q 009413 374 ITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMG 453 (535)
Q Consensus 374 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 453 (535)
.+++..+.+|.+...+++.+....... .....+.|.+.+...+.+.+..+.......-..+++|. .||++
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~---------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~v 132 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSG---------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTV 132 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC---------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCce
Confidence 445566788888888888777654321 11124566676767777777777666666667789996 59999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 454 FALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 454 ~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
.|+.-...++++.+-..+...+.+
T Consensus 133 vgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 133 VGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred ehhhhHHHHhHHHHHHHHHHHHcC
Confidence 999999999888877776655543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0037 Score=65.30 Aligned_cols=119 Identities=14% Similarity=0.205 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccch--hHHHHH
Q 009413 377 MQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVR--MRTMGF 454 (535)
Q Consensus 377 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~ 454 (535)
.+.+.+|.+++.++.++++..+ ..+...+.+.+++.++|.++.=+...+++.|++|++ +|-.+.
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~--------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF 157 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISS--------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF 157 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence 3678899999999998887631 023556778888888999999999999999999954 456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 455 ALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 455 g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
+++++.-++|+.++|.+.+++.+ ..+++..|...++-+.++++.++...++.++.
T Consensus 158 t~fY~~iNiGsl~~p~i~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 158 TLFYMGINIGSLIAPIITGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred cEEEEEeehHHHHHHHHHHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 77788888999999999999886 13345667666666777777777777665554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.043 Score=57.92 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=99.6
Q ss_pred cccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccc-hhHHH
Q 009413 341 LQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPL-SIFWL 419 (535)
Q Consensus 341 ~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 419 (535)
+.....++..+..|.++..-. | ..+..+-+.+|.+++.++.++....+.. +. +.+++
T Consensus 76 viaa~slg~~i~~liF~~Ws~----k------~~~~k~Pli~s~ii~~~g~llY~~l~~~------------~~~~~y~m 133 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWSN----K------TGSVKKPLIVSFLIAIIGNLLYLALAYV------------PNGVKYLM 133 (488)
T ss_pred HHHHHHHHHHhcchhhccccc----c------cCCcccCHHHHHHHHHHHHHHHHHHHhc------------ccchHHHH
Confidence 334455666677766655321 1 1222345788999999998888554432 23 67889
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-cccchhhhH
Q 009413 420 LPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFS-DDMKEARLD 498 (535)
Q Consensus 420 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 498 (535)
++..++.|+|.+.... .-+|+++..-.+.|.++++.......+|.++||.+...+..+..+ +..+.+ ..+|. +.
T Consensus 134 L~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~~~~~~n~--YT 208 (488)
T KOG2325|consen 134 LVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMILPGLIFNM--YT 208 (488)
T ss_pred HHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEcCcceEEe--cc
Confidence 9999999998765443 446777766677788888888888888888888888776654322 112223 22232 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 499 LYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
..-|+.+.+.++..+...+..+|..+
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhheeeccc
Confidence 33455667777777777777665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.024 Score=58.58 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccch---hHHHHH
Q 009413 378 QRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVR---MRTMGF 454 (535)
Q Consensus 378 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~ 454 (535)
+.+.+|.++..++.+++.+.... .. .....+...+.+.+.+.++|.++.=|....+..|+++++ .|.+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~------~~-~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP------PS-LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS------SS-C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc------ch-hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhH
Confidence 35677888888888775553210 00 001234467888888999999999999999999999976 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 455 ALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 455 g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
..++..-++|+.++....+++.+ ..++...|.+.++..+++.+.++...++++++
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 77788889999999998888875 23456678777777888877777766666555
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.15 Score=55.14 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=85.5
Q ss_pred HHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHH-HHHHHHHHHHHH-HHHHhhcccccccccCc
Q 009413 26 SNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYST-ILAFSFIYVVGL-VALTSTAFSWAWSTTNK 103 (535)
Q Consensus 26 ~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 103 (535)
....-.+...+|.+....+.+++.+..+..++..++|+++++. -|+.. ..+++.+....+ .+..... ... .
T Consensus 35 v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~-~~~-----~ 107 (521)
T PRK03612 35 LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAF-AFQ-----G 107 (521)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----H
Confidence 4445555566888888999999999999999999999887553 22221 111111111111 1111111 000 0
Q ss_pred cccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc-c
Q 009413 104 ISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ-D 182 (535)
Q Consensus 104 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~-~ 182 (535)
. ....++...++.++..|+..|....+..+...+ +-++..+..|....+|+++|.++.+++. .
T Consensus 108 ~--~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~--------------~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp 171 (521)
T PRK03612 108 L--SRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ--------------HLGHNVATVLAADYLGALVGGLAFPFLLLP 171 (521)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------chhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence 0 111223334455677777777776666543221 1355667777888888888888888764 3
Q ss_pred ccch-hHHHHHHHHHHHHHHHH
Q 009413 183 TFGW-VLGFAIPTIAMVTSTAF 203 (535)
Q Consensus 183 ~~gw-~~~f~~~~~~~~~~~~~ 203 (535)
..|- +..+.++.+-.++++++
T Consensus 172 ~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 172 RLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hcchHHHHHHHHHHHHHHHHHH
Confidence 5674 44444444333334333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=3 Score=44.15 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 416 IFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEAL 478 (535)
Q Consensus 416 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~ 478 (535)
...+++.+++..+.....+.+.+++-.+++.|.+-|++|.+-|...++|+---..++-++.|.
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 455677788888888889999999999999999999999999999999988888777776663
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.23 Score=52.56 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccc---cchhHHHHH
Q 009413 378 QRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEV---PVRMRTMGF 454 (535)
Q Consensus 378 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~ 454 (535)
.-+.++.++..++.+.++..... ..+.....+.+++..+|..+.-....+...|.. |.+ ||..+
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lq 126 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPAS------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQ 126 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHH
Confidence 45666666665555555543210 123344455666677777777766655655554 555 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 009413 455 ALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKF 521 (535)
Q Consensus 455 g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (535)
+....+..+|++++..+.|...+.. ..+..|.+.+.+..+..+..+++..|
T Consensus 127 S~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 127 SFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998877621 12234555555555555555555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.65 Score=51.65 Aligned_cols=130 Identities=14% Similarity=0.173 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccch---hHHHH
Q 009413 377 MQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVR---MRTMG 453 (535)
Q Consensus 377 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~ 453 (535)
.+.+.++.++..++..+++.... +. ..........++.+.+.++|.+..-|...++..++++++ .|-..
T Consensus 54 ~~tIl~~~ii~~lG~~llai~a~------~~--~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~ 125 (654)
T TIGR00926 54 FKTILYLSIVYVVGHALLSFGAI------PS--SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRF 125 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC------cc--cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHH
Confidence 35677788888888777765210 00 000112234567788889999999999999999999754 35667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009413 454 FALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFK 523 (535)
Q Consensus 454 ~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (535)
...++...++|+.+++.+.+++.+-....+ ...++...|.+.+++++++.++++...++++
T Consensus 126 F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---------~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~ 186 (654)
T TIGR00926 126 FSFFYFAINAGSLISTIITPILRGDVGCFG---------CQDCYPLAFGVPAILMILALIVFMAGSKMYK 186 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------cCcchHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 777778888999999988888753110000 0012345666666677777666665554443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.35 Score=53.58 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccc--
Q 009413 416 IFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMK-- 493 (535)
Q Consensus 416 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~-- 493 (535)
+..+++..++.|+|..-..+...+|+.|.+.++......|+.+....+|-++|-+++++.....-..+ -.+..++
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~---~~~~~it~~ 313 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG---LSPIGITPT 313 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc---cCCCCCCCC
Confidence 44677889999999999999999999999999999999999999999999999999988876532211 0111111
Q ss_pred hhhhHHH----HHHHHHHHHHHHHHHHHhhccccc
Q 009413 494 EARLDLY----YWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 494 ~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
+..+-.. |.+.+.+.++..+.++++-++.++
T Consensus 314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 2222223 344455555555666666554443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.0077 Score=65.29 Aligned_cols=129 Identities=13% Similarity=0.129 Sum_probs=2.9
Q ss_pred cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHH----HHHhhhhc--------
Q 009413 339 ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVE----TKRLEMNQ-------- 406 (535)
Q Consensus 339 ~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~-------- 406 (535)
+.+.+.+-++.++...+..+ +++| ..+++.+..|.++++++.++.++.. .+.+...+
T Consensus 41 G~i~s~~di~~~~~~~~vsy----~g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSY----FGGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 34444444555555444443 2333 3345788999999999998876532 11111000
Q ss_pred ----c---------------C---CCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHH
Q 009413 407 ----Q---------------Y---SETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVG 464 (535)
Q Consensus 407 ----~---------------~---~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg 464 (535)
+ . .+......++++++.++.|+|..-..+...+|+.|.++++..+.+.|+.+....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 1 0 01122235778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 009413 465 SFLSALLITVIEAL 478 (535)
Q Consensus 465 ~~lg~~~~~~i~~~ 478 (535)
-.+|-.+++.+..+
T Consensus 190 Pa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 190 PALGFLLGSFCLRI 203 (539)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhc
Confidence 99888888766643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.96 E-value=1 Score=47.38 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHH
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVG 85 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 85 (535)
.++...+...+..++--+.-..+..|+..+ |+++...|..=+.-.+....+.....++.+|+ |-.|+=+.++..-..+
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence 344444444444444444556788999865 99999999999999999999999999999995 9999888887766655
Q ss_pred HHHHHhhccccccccc-CccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 86 LVALTSTAFSWAWSTT-NKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
..++..+-+.+. ++ +.. +...++.+.++.=+|.=++=-+..-++-|..|+ .+|+...+....
T Consensus 337 L~~~v~~~~~~~--~~~~~~--s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------------~~Rg~v~gvq~s 399 (432)
T PF06963_consen 337 LALCVVSFWAPG--SPFSSI--SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------------SERGAVSGVQNS 399 (432)
T ss_pred HHHHHHHHhcCC--CCchhh--HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------------HHhhHHHHHHHH
Confidence 554443322211 00 111 455566666665566556666777888888887 679999999888
Q ss_pred Hhhhhhhhhhhhh
Q 009413 165 GVCSGSLLGVTVM 177 (535)
Q Consensus 165 ~~~lg~~i~~~~~ 177 (535)
..++.-.+-..++
T Consensus 400 l~~lf~ll~~~~~ 412 (432)
T PF06963_consen 400 LQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=5.8 Score=39.42 Aligned_cols=115 Identities=9% Similarity=0.081 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC---------CC-----hhhHHHHHHHHHHHHhhhhhhhHHhhhhc-cc
Q 009413 6 SCIMLIVIAGKERFAFKGVASNLVTYLTDVVK---------MS-----NSSAAKTVNSWCGFTSMLPLVLAPLADSY-WD 70 (535)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---------~s-----~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~G 70 (535)
..+.-++.-.|++++|-.+.+-.---+.++.+ .| ....|.++.+=.+=+.+-.+.+-..-||+ +|
T Consensus 13 ~~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~ 92 (409)
T KOG3880|consen 13 IAVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFG 92 (409)
T ss_pred cchHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence 34456677889999987665555444444333 01 11133444444444555566666677875 23
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhc
Q 009413 71 RYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGAD 135 (535)
Q Consensus 71 rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~ 135 (535)
.|-. ...++.+.+..+-+++. +.+.-+.+..+..++.|.-...--++-+.
T Consensus 93 ~Ri~--~~v~~sa~s~~lVafs~-------------s~~~sL~GV~~aSissGlGEiTFL~lss~ 142 (409)
T KOG3880|consen 93 FRIA--LVVLLSALSFFLVAFSN-------------SVPMSLLGVVFASISSGLGEITFLALSSR 142 (409)
T ss_pred hHHH--HHHHHHhcceEEEEecc-------------chhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence 3322 22233444555556665 77788888888888888776665555444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.4 Score=46.47 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=68.8
Q ss_pred HHHHhhhhhhhHHhhhhc--ccchHHHHHHHHHHHHHHHHHHhhccccc-ccccCc----cccchHHHHHHHHHHHhccc
Q 009413 51 CGFTSMLPLVLAPLADSY--WDRYSTILAFSFIYVVGLVALTSTAFSWA-WSTTNK----ISSSSAFLFWSLCLISLGQG 123 (535)
Q Consensus 51 ~~~~~~~~~~~G~laDr~--~Grk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~l~g~g~g 123 (535)
..+..++..+.+.+++|. +||++++..+..+..++.++......... ...+.. -.-+....++.-++.|++.+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~ 368 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA 368 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH
Confidence 455556666666665432 58999999888887776655544432111 111000 00034455566688999999
Q ss_pred CCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhh
Q 009413 124 GYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLG 173 (535)
Q Consensus 124 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~ 173 (535)
......+.++++..|+ +|..+++++-+-..+++.++
T Consensus 369 ~~~t~~~~ii~~~~~~--------------~~~~~fsi~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 369 CFNTQRYVIIALLYPD--------------DRAQAFSLFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHHHHHhcC--------------chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999965 46667777666666655544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.15 E-value=19 Score=38.61 Aligned_cols=114 Identities=8% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccc-ccccC------------c-------cccchHHHH
Q 009413 53 FTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWA-WSTTN------------K-------ISSSSAFLF 112 (535)
Q Consensus 53 ~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~-------~~~~~~~~~ 112 (535)
+..++..+-.+++|++ +|.+++-.....+.....+.++.-.|-. ...++ + . +.|...
T Consensus 71 ~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~--~~Wt~s 147 (491)
T PF03219_consen 71 VAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMF--RNWTFS 147 (491)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHH--HHHHHH
Confidence 4556667789999995 9999887776666555544444322110 00000 0 0 111111
Q ss_pred HHHHHHHhcccCCch-hhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc
Q 009413 113 WSLCLISLGQGGYNP-SLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD 182 (535)
Q Consensus 113 ~~~~l~g~g~g~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~ 182 (535)
+.-+..-+-.....+ .-.++..|.++. ++-.|.++.+..+.|+|.+++..+..++.+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~-------------~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTV-------------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221122222 347788888777 456889999999999999999888887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.71 Score=48.12 Aligned_cols=184 Identities=7% Similarity=-0.048 Sum_probs=111.4
Q ss_pred CcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-cCCCh----------------hhHHHHHHHHHHHHhhhhhhhHHhh
Q 009413 3 LSKSCIMLIVIAGKERFAFKGVASNLVTYLTDV-VKMSN----------------SSAAKTVNSWCGFTSMLPLVLAPLA 65 (535)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~s~----------------~~~~~~~~~~~~~~~~~~~~~G~la 65 (535)
.+|..+.+++...+.+++.+....+-.-++-++ ++=|+ ..-.|-+..+.+...+.+...-++.
T Consensus 277 mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~ 356 (498)
T KOG0637|consen 277 MPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLS 356 (498)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999888777766666442 22111 1223667777888889999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCC-----
Q 009413 66 DSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSD----- 140 (535)
Q Consensus 66 Dr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~----- 140 (535)
|| +|-|+.+..+...+.++..+..... +......-+-..|+-.+.......+.++.+.-..
T Consensus 357 ~~-~g~r~~y~~~~~~f~~~~~~~gl~~-------------~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~ 422 (498)
T KOG0637|consen 357 RK-FGTRKRYWGGVNAFGLATGLAGLVL-------------NTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAI 422 (498)
T ss_pred Hh-cCcceEEeehhHHHHHHHHHHhhhh-------------hHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccc
Confidence 99 5977666666665666666666555 4555555555555444444444344433322111
Q ss_pred -----CCCCC--cCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccc--hhHHHHHHHHHHHHHHH
Q 009413 141 -----DELPT--TTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFG--WVLGFAIPTIAMVTSTA 202 (535)
Q Consensus 141 -----~~~~~--~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~g--w~~~f~~~~~~~~~~~~ 202 (535)
+..+. ....+ ..++.-.++.+..+.+..++.....|.+.+..| --..|...++..+++.+
T Consensus 423 t~~~pf~~~s~~~~~sg--~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i 491 (498)
T KOG0637|consen 423 TFSIPFALASIEIGNSG--LGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGI 491 (498)
T ss_pred ccccccccccccccCcc--CCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHH
Confidence 01110 11111 234777788888888888888777777766665 22344444444333333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=91.67 E-value=3.9 Score=36.58 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 415 SIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 415 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+++.-++.|++.+..-...-.++.+...++.+++-.+++....+.+.++|..+.-.+..
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888999999998888878899999999999999999999999988888877755543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.35 E-value=9.6 Score=38.75 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=64.1
Q ss_pred cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHH
Q 009413 339 ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFW 418 (535)
Q Consensus 339 ~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (535)
..+.........+.+++.+.+.++++|| +...+.-++.+++.+.-- ..+.+.
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----------~~cl~~cily~~scl~k~-----------------~~~~~~ 123 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRK-----------KACLLFCILYSLSCLTKH-----------------SSNYPV 123 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHh-----------------ccccHH
Confidence 3444555566777777777776666655 222333333333332111 345678
Q ss_pred HHHHHHHHHHHHHHHhhhhh-----hhhhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 009413 419 LLPQYILLGISDIFTVIGMQ-----EFFYNEVPVRMRTMGFALYT-SVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 419 ~~~~~~l~g~g~~~~~~~~~-----~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~~~~~i~~ 477 (535)
+++.-++.|++..+.+...- ++-.+.+|++..+...+... ..+.+-.+++..+..+..+
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 88888999999888776533 33445667666666655554 3455555555666655544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=91.23 E-value=18 Score=38.66 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 417 FWLLPQYILLGISDIFTV-IGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 417 ~~~~~~~~l~g~g~~~~~-~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
|...+.++...+-..... -..+.++.|....++-.+..++.....++|.++|+.+..++.+
T Consensus 129 W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 129 WSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555333344 3789999999999999999999999999999999999888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.50 E-value=26 Score=37.06 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 415 SIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 472 (535)
Q Consensus 415 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~ 472 (535)
+-++.++..++.|+..+......+.+..+..+++.|-.+..+..+...+|-.+|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788899999988888888888899999998888888888888887777664
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.33 E-value=30 Score=35.98 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 415 SIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 472 (535)
Q Consensus 415 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~ 472 (535)
+-++.++...++|+..+-.....+.++.+..|++.+-.+..+.......|-..|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4577788888899999988888888999999988777777666666655555555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.36 E-value=4.1 Score=39.66 Aligned_cols=141 Identities=11% Similarity=0.053 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhcccch--HHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHh
Q 009413 43 AAKTVNSWCGFTSMLPLVLAPLADSYWDRY--STILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISL 120 (535)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 120 (535)
-|.+.+.+.+.+++++-+..++..|- ..| ..+.+..++.++. +.+...... ..++++ ++..-+++-++.-.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~-l~Lpilt~~---vsP~ke--s~~~s~i~F~~~E~ 356 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAA-LLLPILTSS---VSPSKE--SPSESLIGFCLFEA 356 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHH-HHHHHHHhc---cCCCcC--CchHHHHHHHHHHH
Confidence 47888999999999988888888774 322 2333333333332 222222111 123344 55556777778888
Q ss_pred cccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 121 GQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTS 200 (535)
Q Consensus 121 g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~ 200 (535)
+.|.++|++.-+=..+.|+ ..|+..+.++..-.|+-..++-..---=....+-|..|-++.+...++
T Consensus 357 cvGlfwPSimkmRsqyIPE-------------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 357 CVGLFWPSIMKMRSQYIPE-------------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHhhcchHHHHHHHhhCCH-------------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 8899999999999998888 568999999888777765544221000011234567777777665555
Q ss_pred HHH
Q 009413 201 TAF 203 (535)
Q Consensus 201 ~~~ 203 (535)
.+.
T Consensus 424 ~i~ 426 (454)
T KOG4332|consen 424 SIL 426 (454)
T ss_pred HHH
Confidence 433
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.20 E-value=15 Score=37.21 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=81.4
Q ss_pred HHHHHHhh-hhcCCChhhHH-HHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCc
Q 009413 26 SNLVTYLT-DVVKMSNSSAA-KTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNK 103 (535)
Q Consensus 26 ~~~~~yl~-~~l~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (535)
+++.+|+. .+.|++..+.- -+.=...-.+.+.-++.=.+.|-. --|++++.-.+.....-.++.+..
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~---------- 93 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGP---------- 93 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcC----------
Confidence 55677776 56677776654 111222333444445555688974 667777666555555556666665
Q ss_pred cccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhc--
Q 009413 104 ISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQ-- 181 (535)
Q Consensus 104 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~-- 181 (535)
+.+.+-+.-+..|. ....-.++-++.+.+ -++ +.+.++.+....+.-.|...|...+-.+.
T Consensus 94 ---sV~~mQvlE~FyG~----~tAaEIAYysYIYs~-------Vd~---~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 94 ---SVKAMQVLEFFYGP----ATAAEIAYYSYIYSK-------VDP---EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred ---CchheeeehhhcCh----HHHHHHhhhheeeee-------cCH---HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 55555555555444 334445555555554 443 34566666665555555555544433332
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 009413 182 DTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 182 ~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+..++...=.++.....++..+.++
T Consensus 157 ~~~sy~~LN~ISL~~~~ia~~~A~f 181 (433)
T KOG3810|consen 157 ETLSYTTLNYISLAEVTIAVLLALF 181 (433)
T ss_pred cccchhhhchhhHHHHHHHHHHHhh
Confidence 2334444444454444454444333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=82.87 E-value=65 Score=33.68 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHH
Q 009413 379 RMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYT 458 (535)
Q Consensus 379 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 458 (535)
.++++.+...+...++.+. .+++++-+..++.|++... ..+.++++....|++.=-++++...
T Consensus 73 viil~~~~~i~t~~lll~~----------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~r 135 (412)
T PF01770_consen 73 VIILQALSYIITWLLLLFG----------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTR 135 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHH
Confidence 3455555555555554442 4667777788888887765 5667789999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 009413 459 SVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 459 ~~~~lg~~lg~~~~~~i~~ 477 (535)
...-+|..++..++..+..
T Consensus 136 aa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 136 AATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 535 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 8e-21 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = 2e-98
Identities = 108/536 (20%), Positives = 202/536 (37%), Gaps = 59/536 (11%)
Query: 17 ERFAFKGVASNLVTYLTDVV------KMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWD 70
ERF+F G+ + L +L + ++ + A +S+ PL+ +AD ++
Sbjct: 24 ERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG 83
Query: 71 RYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQ 130
+Y+TIL S IY VG L S + L LI+LG GG P +
Sbjct: 84 KYNTILWLSLIYCVGHAFLAIFEHS------------VQGFYTGLFLIALGSGGIKPLVS 131
Query: 131 AFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGF 190
+F DQ D ++ F +YF + GS M + FG + F
Sbjct: 132 SFMGDQFDQSNK----------SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181
Query: 191 AIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDN 250
IP + M +T FF G + Y + E L I A+ N +VL +
Sbjct: 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIG 241
Query: 251 SDTVELELQEQKPLCGNKKL------------GSSKELDEDEYPKSGNHLVKNAKVVLKL 298
+ L L L + E + V + VL++
Sbjct: 242 GVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRI 301
Query: 299 FPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDK 358
++ ++ F +F Q A+ + Q M + PA +Q+ + ++LL+P +
Sbjct: 302 LVLFALVTPFWSLFDQKASTWILQANDMVK----PQWFEPAMMQALNPLLVMLLIPFNNF 357
Query: 359 ILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFW 418
+L P I R +T +++MG G+ ++ ++ I+ ++ LSIFW
Sbjct: 358 VLYPAIE---RMGVKLTALRKMGAGIAITGLSWIVVGTIQ-------LMMDGGSALSIFW 407
Query: 419 LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEAL 478
+ Y LL ++ EF Y++ P M+ + +T VG+ L +++
Sbjct: 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467
Query: 479 SSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNEAC 534
+ M ++++ A + L+ +++ + + ++ +
Sbjct: 468 TV---TEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYRQATGS 518
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 79/541 (14%), Positives = 179/541 (33%), Gaps = 105/541 (19%)
Query: 17 ERFAFKGVASNLVTYLTDVVK-----MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDR 71
ERF++ G+ + L+ Y+ ++ ++ ++AA + + + + +AD
Sbjct: 25 ERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA 84
Query: 72 YSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQA 131
+ + ++G + L + ++ LF S+ LI +G G P++
Sbjct: 85 RPAVFWGGVLIMLGHIVLA-------------LPFGASALFGSIILIIIGTGFLKPNVST 131
Query: 132 FGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFA 191
D D ++ F + FG+ G+ + ++ Q+ G+ + F+
Sbjct: 132 LVGTLYDEHDR-----------RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180
Query: 192 IPTIAMVTSTAFFSFGSQIY-----------------RYKSDETLKCTVSLINIVQAIKA 234
+ I M + FG + + + I I+ +
Sbjct: 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL 240
Query: 235 AASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKV 294
+ I L + + P+ + SS ++ E+ +
Sbjct: 241 VGWNSLPAYINLLTIVAIAI--------PVFYFAWMISSVKVTSTEHLR----------- 281
Query: 295 VLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMP 354
V+ P++ ++F I +Q + + S++ P + QS + I+L P
Sbjct: 282 VVSYIPLFIAAVLFWAIEEQGSVVLA---TFAAERVDSSW-FPVSWFQSLNPLFIMLYTP 337
Query: 355 LYDKILIPFIHIIIRCEKGITVMQRMGIGMF---LSIIAMIIAAIVETKRLEMNQQYSET 411
+ + + + + +G+ LS + M I Y +
Sbjct: 338 FFAWLWTA------WKKNQPSSPTKFAVGLMFAGLSFLLMAIPG----------ALYGTS 381
Query: 412 VPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALL 471
+S WL+ + L+ + ++ P + +++ VGS L+A L
Sbjct: 382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441
Query: 472 ITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDN 531
+T+ A S Y+ L S + ++ V L K + ++
Sbjct: 442 VTLYNAKSEVA-----------------YFSYFGLGSVVLGIVLVFLSKRIQGLMQGVEG 484
Query: 532 E 532
Sbjct: 485 S 485
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 68/427 (15%), Positives = 116/427 (27%), Gaps = 148/427 (34%)
Query: 129 LQAFGADQLD----SDDELPTTTD-------NQKSDKKSLFFKWWYFGVCSGSLLGVTVM 177
AF + D D + K +W ++ V
Sbjct: 26 EDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 178 SYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETL--KCTVSLINIVQAIKAA 235
++ + +++ I T S + Q R +D + K VS + ++ A
Sbjct: 85 EVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 236 ASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKE-LDEDEYPKSGNHLVKNAKV 294
+L+ +K VL + G LGS K + D + + KV
Sbjct: 144 LLELRPAKNVL-----------------IDG--VLGSGKTWVALD--------VCLSYKV 176
Query: 295 VLKL-FPI-WTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILL 352
K+ F I W + + N P L+ +L
Sbjct: 177 QCKMDFKIFW---------------------LNL-----KNCNSPETVLE--------ML 202
Query: 353 MPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETV 412
L +I + R + + R I + E +RL ++ Y
Sbjct: 203 QKLLYQIDPNW---TSRSDHSSNIKLR------------IHSIQAELRRLLKSKPYENC- 246
Query: 413 PLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLI 472
LL +LL + + + F + LL
Sbjct: 247 ------LL---VLLNVQNAKAW------------------------NAFNLSC--KILLT 271
Query: 473 T----VIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDN 528
T V + LS++ LD + L SLLL K+ R +
Sbjct: 272 TRFKQVTDFLSAAT---------TTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQD 317
Query: 529 LDNEACK 535
L E
Sbjct: 318 LPREVLT 324
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 9e-04
Identities = 50/450 (11%), Positives = 113/450 (25%), Gaps = 177/450 (39%)
Query: 51 CGFTSMLPLVLAPLADSYWDRYSTILAFSF-IYVVGLVALTSTAFSWAWSTTNKISSSSA 109
G T + L Y F I+ W +S
Sbjct: 161 SGKTW---VALDVCLS-----YKVQCKMDFKIF---------------WLNLKNCNSPET 197
Query: 110 FL--FWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167
L L +P+ + + D + + +++ + L Y
Sbjct: 198 VLEMLQKLLYQ------IDPNWTS----RSDHSSNIKLRIHSIQAELRRLLKSKPY---- 243
Query: 168 SGSLLGVTVMSYIQDTFGWVL-GFAIPTIAMVTS---TAFFSFGSQIYRYKS-------- 215
LL V+ +Q+ F + ++T+ + + S
Sbjct: 244 ENCLL---VLLNVQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 216 --DETLK-----------------CTVS--LINIV-----------------------QA 231
DE T + ++I+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 232 IKAAASKL----------------KNSKI---VLPI--DNSDTVELELQEQKPLCGNKKL 270
I+++ + L ++ I +L + + ++ + K L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSL 416
Query: 271 --GSSKE-------LDEDEYPKSGNHLVKNAKVV-----LKLFPIWTMLL---------- 306
KE + + K N + +V K F ++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 307 ---------------MFAVIFQQPATF-FTKQGMTMK-RNIGSNFKIPPATLQSAITVS- 348
+F ++F F F +Q K R+ + + + L + +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLD---FRFLEQ----KIRHDSTAWNASGSILNTLQQLKF 529
Query: 349 ----IILLMPLYDKILIPFIHIIIRCEKGI 374
I P Y++++ + + + E+ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENL 559
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.46 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.32 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.08 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.78 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.35 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=289.97 Aligned_cols=451 Identities=16% Similarity=0.199 Sum_probs=299.1
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhh-----cCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-cccchHHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDV-----VKMSNSSAAKTVNSWCGFTSMLPLVLAPLADS-YWDRYSTI 75 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grk~~~ 75 (535)
+|+|.++.+.+..+++.+++|++.++++.|++++ +|+|..+.+++.+.+.++..++++++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~ 88 (491)
T 4aps_A 10 GQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAV 88 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHH
Confidence 5788899999999999999999999999999988 99999999999999999999999999999999 6 999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccch
Q 009413 76 LAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKK 155 (535)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r 155 (535)
..+.++..++.+++++++ +.+.++++|+++|++.|...|...++++|.+|+ ++ ++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~----~~r 144 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF-------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-------HD----RRR 144 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC-------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-------CT----THH
T ss_pred HHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-------cc----ccc
Confidence 999999999999998887 889999999999999999999999999999998 22 247
Q ss_pred hhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHH-
Q 009413 156 SLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKA- 234 (535)
Q Consensus 156 ~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (535)
+.+++.++.+.++|..++|.+++++.++.||++.|++.++..+++.++.+...++..+++.++.+++....+..+....
T Consensus 145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
T 4aps_A 145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHH
Confidence 8899999999999999999999999998999999999877766665555544333222111100000011111111100
Q ss_pred ------------HHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHH
Q 009413 235 ------------AASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIW 302 (535)
Q Consensus 235 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (535)
...... ..+.. +...... .... .... .......+. ......++++......++
T Consensus 225 g~~l~~~~~~~~~~~~~~------~~~~~--~~~~~~~-~~~~--~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 289 (491)
T 4aps_A 225 SLAVAGFIAIIVVMNLVG------WNSLP--AYINLLT-IVAI--AIPV-FYFAWMISS---VKVTSTEHLRVVSYIPLF 289 (491)
T ss_dssp CCCCHHHHHHHHHHHHHS------SCCTT--HHHHHHH-HHHH--HHHH-HHHHHHC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc------Ccccc--cchhhhh-HHHH--HHHH-HHHHHHhhc---ccccHHHHHHHHHHHHHH
Confidence 000000 00000 0000000 0000 0000 000000000 000012334444455555
Q ss_pred HHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHH
Q 009413 303 TMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGI 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~ 382 (535)
.....++..+.+..+.+..+... ..+. .....+.+...+.+..++..++.+++.+++.|| +....+.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r------~~~~~~~~~~ 359 (491)
T 4aps_A 290 IAAVLFWAIEEQGSVVLATFAAE---RVDS-SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN------QPSSPTKFAV 359 (491)
T ss_dssp HHHHHHHHHHGGGGTHHHHHHHH---SCCC-SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHH---Hhcc-CccCHHHHhccchHHHHHHHHHHHHHHHHHhcc------CCCchHHHHH
Confidence 55566666666655543332211 1110 113456666777777888888887765554443 2344566778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 009413 383 GMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFG 462 (535)
Q Consensus 383 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 462 (535)
+.++.++++.++....... +.....+.+++++.+++.+++.+...+..++++.|..|++.||+++|+.+....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY-------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC-------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888877766543210 001134667788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 009413 463 VGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRT 526 (535)
Q Consensus 463 lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 526 (535)
+|+.+++.+.+++.+ .+....|++.+++++++.++.+...++.+++.
T Consensus 433 ~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 433 VGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887664 22345677777777777777777766665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=281.53 Aligned_cols=462 Identities=22% Similarity=0.371 Sum_probs=287.4
Q ss_pred CCcchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcC------CChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc-cchHH
Q 009413 2 GLSKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVK------MSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW-DRYST 74 (535)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~ 74 (535)
.++|.++.+.+..++.++++|++.++++.|+++++| +|..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 467888999999999999999999999999999999 999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccc
Q 009413 75 ILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDK 154 (535)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 154 (535)
+..+.++..++.+++.++.. +.+.++++|++.|++.+...|...++++|.+|+ +++ .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r---~~ 145 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEH------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ-------SNK---SL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSS------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST-------TTT---TH
T ss_pred HHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc-------cch---HH
Confidence 99999999999888887641 677889999999999999999999999999998 221 12
Q ss_pred hhhhhhhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHH
Q 009413 155 KSLFFKWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKA 234 (535)
Q Consensus 155 r~~~~~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (535)
+...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+..+...++.++++++++ +..+..+....
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 221 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK----DPHGFLPVIRS 221 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc----cchhHHHHHHH
Confidence 34556669999999999999999999988899999998887766665555544443322222211 11111111000
Q ss_pred HHhccccccc-----------------ccCCCCC--------------C-ccchhh--ccccccccccCCCCCccccccc
Q 009413 235 AASKLKNSKI-----------------VLPIDNS--------------D-TVELEL--QEQKPLCGNKKLGSSKELDEDE 280 (535)
Q Consensus 235 ~~~~~~~~~~-----------------~~~~~~~--------------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
..+++..... ....... | .....| .+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------- 283 (524)
T 2xut_A 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE-RA----------------- 283 (524)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHH-HS-----------------
T ss_pred HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHh-hh-----------------
Confidence 0000000000 0000000 0 000001 00 00
Q ss_pred CCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccccchhHHHHHHHHhhhhHH
Q 009413 281 YPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQSAITVSIILLMPLYDKIL 360 (535)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 360 (535)
....++...+++++.......+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 00011111233444444444444445555556665554444322222110 0 2445566667778888888888876
Q ss_pred HhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhh
Q 009413 361 IPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEF 440 (535)
Q Consensus 361 ~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 440 (535)
.+..+|.++ +.++.+.+.++.++.+++++++...+... +.....+.+++++.+++.+++++...+..+++
T Consensus 360 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 360 YPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQLMM-------DGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp --------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 24555667778888877776654421100 00012356677888999999999999999999
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc-ccchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 009413 441 FYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSD-DMKEARLDLYYWVLALASALSLLLYVMLC 519 (535)
Q Consensus 441 ~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (535)
+.|.+|++.||+++|+.++..++|+.+++.+.+.+.+.+. .+|.++ ..+. ....|++.+++++++.+++++..
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765210 012110 0010 12236777777888777777766
Q ss_pred ccccccccc
Q 009413 520 KFFKSRTDN 528 (535)
Q Consensus 520 ~~~~~~~~~ 528 (535)
++.++++++
T Consensus 504 ~~~~~~~~~ 512 (524)
T 2xut_A 504 RSYQMQDHY 512 (524)
T ss_dssp ---------
T ss_pred HHhccchhh
Confidence 666555433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=251.79 Aligned_cols=397 Identities=12% Similarity=0.001 Sum_probs=254.8
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.++.+++..+...+..+.+.+.++.+. +++ .|..+.+++.+.+.++..++++++|+++||+ |||++++.+.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHH
Confidence 4455566666666666666656655444 567 9999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHh----hcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 85 GLVALTS----TAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 85 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
+.+++++ ++ +++.++++|+++|++.+...+...++++|.+|+ ++|+++.+
T Consensus 105 ~~~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~ 158 (451)
T 1pw4_A 105 VMLFMGFVPWATS-------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------------KERGGIVS 158 (451)
T ss_dssp HHHHHHHCHHHHS-------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------------THHHHHHH
T ss_pred HHHHHHhhhhccc-------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------------hhhhHHHH
Confidence 9999988 66 888999999999999999999999999999998 67999999
Q ss_pred hhhhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhccccccccCCCcccc--cchHHHHHHHHHHHHh
Q 009413 161 WWYFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKC--TVSLINIVQAIKAAAS 237 (535)
Q Consensus 161 ~~~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 237 (535)
+.+.+.++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.+++....+++ ++...+ .
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 229 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD---------D 229 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc---------c
Confidence 9999999999999999999888888 999999888766655444444333322211110000 000000 0
Q ss_pred cccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcc---hhhhHHHhhHHhHH-HHHHHHHHHhc
Q 009413 238 KLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHL---VKNAKVVLKLFPIW-TMLLMFAVIFQ 313 (535)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~~~~~~~~ 313 (535)
.+. +.. +. .+.++.. ....+..+...... .....+.....
T Consensus 230 ~~~--------~~~--~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 230 YNE--------KAE--QE--------------------------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp ---------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh--------hhh--cc--------------------------cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 00 0000000 01112222222111 11111112211
Q ss_pred CCCceeeeecccccccCCCccccCc---cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHH-H
Q 009413 314 QPATFFTKQGMTMKRNIGSNFKIPP---ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSI-I 389 (535)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~-~ 389 (535)
..+.+ .... ++.+. +.+.....++.+++..+.+++.+++.+ ++.+.+.++..+.. +
T Consensus 274 ~~~~~-------~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 274 WSPTY-------LKEV----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHH-------BTTB----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHH
Confidence 11111 1111 11222 233344445555555555554433200 12233444444443 4
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHHH
Q 009413 390 AMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLS 468 (535)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~lg 468 (535)
+++++... ...+.+...+..++.|++.....+..+++..|..|++.||+++|+.+....+ |..++
T Consensus 334 ~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 334 ATIVYWMN--------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHTTSC--------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 44333221 0124556667777888888888888889999999999999999999999999 99999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 469 ALLITVIEALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
+.+.+.+.+. .++...|++.+++.+++.+..+...++.+++
T Consensus 400 ~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (451)
T 1pw4_A 400 SAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440 (451)
T ss_dssp HHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999998872 1245667777777777777666655443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=244.76 Aligned_cols=408 Identities=12% Similarity=0.030 Sum_probs=226.5
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhccccccccc-----CccccchHHHHH
Q 009413 39 SNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTT-----NKISSSSAFLFW 113 (535)
Q Consensus 39 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 113 (535)
+..+.+++.+++.++..++++++|+++||+ |||++++.+.+++.++.++++++......... ...+.|++.+++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 346778999999999999999999999995 99999999999999999998864311100000 001118899999
Q ss_pred HHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhhhhhhhhhhhhhhhcc--------ccc
Q 009413 114 SLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVCSGSLLGVTVMSYIQD--------TFG 185 (535)
Q Consensus 114 ~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~~~~~l~~--------~~g 185 (535)
+|+++|+|.|+..+..+.+++|..|+ ++|++..+..+.+..+|..+++.++..+.. ..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~-------------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPA-------------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCG-------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCH-------------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 99999999999999999999999998 789999999999999999998887665432 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhcccc
Q 009413 186 WVLGFAIPTIAMVTSTAFFSFGSQIYR---YKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQK 262 (535)
Q Consensus 186 w~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (535)
|+..+.+..+..++.++..+. .++.+ ..+.+.+ +..+.......+....... . +.....+ .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~-------~a~~~l~~~~~~~~~~~~~-----~--~~~~~~~-~ 262 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQE-------QAEGILRKIMGNTLATQAV-----Q--EIKHSLD-H 262 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHH-------HHHHHHHHHHHHHHHHHHH-----H--HHHHHHH-H
T ss_pred hHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchh-------HHHHhHHHhcCCchhHHHH-----H--HHHHHHH-h
Confidence 776666555544433333222 22111 1111111 1111111111110000000 0 0000000 0
Q ss_pred ccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccCccccc
Q 009413 263 PLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIPPATLQ 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (535)
.. ++........+++.........+... ..++ ....+........+. .........
T Consensus 263 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 318 (491)
T 4gc0_A 263 GR-----------------KTGGRLLMFGVGVIVIGVMLSIFQQF--VGIN----VVLYYAPEVFKTLGA-STDIALLQT 318 (491)
T ss_dssp HH-----------------HHTTHHHHSCCTHHHHHHHHHHHHHH--TCHH----HHHHHHHHHHHHSSC-CHHHHHHHH
T ss_pred hh-----------------hhhhHHHHhcccHHHHHHHHHHHHHH--hhhh----HHHhcchHHHHhcCC-CccchhhHH
Confidence 00 00000001111111111111111100 0000 000000011111110 000111112
Q ss_pred cchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHH
Q 009413 343 SAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQ 422 (535)
Q Consensus 343 ~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (535)
....+..++...+...+.++++|| +.+..+...+.++++.+...... .......++..
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~ 376 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHH
Confidence 222333334444444444433333 44556666666665554433210 01122222222
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhHHHHH
Q 009413 423 YILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEARLDLYYW 502 (535)
Q Consensus 423 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (535)
.++.........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+.+.... ....+....|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----------~~~~~~~~~~~ 446 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----------VAHFHNGFSYW 446 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----------HHHHTTCHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhhhHHHH
Confidence 23333333344577788999999999999999999999999999999988876541100 00112234677
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccccc
Q 009413 503 VLALASALSLLLYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 503 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 532 (535)
+++++++++.+..+++.||+|+|+.||+++
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 888999999999999999999999998766
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=231.69 Aligned_cols=349 Identities=8% Similarity=0.009 Sum_probs=227.7
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+.+..++...++..+....+.+. .+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHH
Confidence 34455555556666665544444 4557779999999999999999999999999999999995 999999999999999
Q ss_pred HHHHH---HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 85 GLVAL---TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
+.+++ ..++ +++.++++|++.|++.|...+...++++|.+|+ ++|+++.++
T Consensus 104 ~~~~~~~~~~~~-------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------------~~r~~~~~~ 157 (438)
T 3o7q_A 104 GAALFWPAAEIM-------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------------SSGHFRLNL 157 (438)
T ss_dssp HHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------------TTHHHHHHH
T ss_pred HHHHHHhccccc-------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------------hhHHHHHHH
Confidence 99888 6666 899999999999999999999999999999998 679999999
Q ss_pred hhhHhhhhhhhhhhhhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhccccccccC
Q 009413 162 WYFGVCSGSLLGVTVMSYIQ-DTFG-------------------------WVLGFAIPTIAMVTSTAFFSFGSQIYRYKS 215 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (535)
.+.+.++|..++|.+++++. +..+ ||+.|++.+...++..++.+..+. ++.+
T Consensus 158 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~ 235 (438)
T 3o7q_A 158 AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccc
Confidence 99999999999999999987 5554 999997766555444443333211 1111
Q ss_pred CCcccccchHHHHHHHHHHHHhcccccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHH
Q 009413 216 DETLKCTVSLINIVQAIKAAASKLKNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVV 295 (535)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (535)
+++++++ ...+ ....+.+ . .++ +..
T Consensus 236 ~~~~~~~-~~~~--------------------------~~~~~~~---~------------------------~~~-~~~ 260 (438)
T 3o7q_A 236 SDNHSDA-KQGS--------------------------FSASLSR---L------------------------ARI-RHW 260 (438)
T ss_dssp TTCCCCS-STTS--------------------------HHHHHHH---H------------------------TTC-SHH
T ss_pred ccccccc-cccc--------------------------hhhhHHH---H------------------------HhC-hHH
Confidence 1110000 0000 0000000 0 011 111
Q ss_pred hhH-HhHHHHHHHHHHHhcCCCceeeeecccccccCCCccccC---ccccccchhHHHHHHHHhhhhHHHhhhhHhhhcc
Q 009413 296 LKL-FPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGSNFKIP---PATLQSAITVSIILLMPLYDKILIPFIHIIIRCE 371 (535)
Q Consensus 296 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~ 371 (535)
+.. +...+............+.++. +.. ++.+ .+.+.....++.+++.++.+++.+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~------ 324 (438)
T 3o7q_A 261 RWAVLAQFCYVGAQTACWSYLIRYAV------EEI----PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP------ 324 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHS----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hcc----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 111 1111111112122222221101 111 1112 2233333444455555555555443322
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHH
Q 009413 372 KGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRT 451 (535)
Q Consensus 372 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 451 (535)
.+.+..+.++..+++++.... .+. +.+...++.+++.+...|..+++..|..|++ ++
T Consensus 325 -----~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 325 -----HKVLAAYALIAMALCLISAFA----------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHC----------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred -----hHHHHHHHHHHHHHHHHHHHc----------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 245566666666666555442 222 3344457778888888899999999999988 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009413 452 MGFALYTSVFGVGSFLSALLITVIEAL 478 (535)
Q Consensus 452 ~~~g~~~~~~~lg~~lg~~~~~~i~~~ 478 (535)
.++++.. ...+|+.+++.+.+++.+.
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999887 6679999999999998874
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=218.96 Aligned_cols=347 Identities=10% Similarity=0.044 Sum_probs=228.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLV 87 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~ 87 (535)
+.++...++..+......+.++.+ .+++|.|..+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445666677777776666666654 568999999999999999999999999999999995 999999999999999999
Q ss_pred HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhhHhh
Q 009413 88 ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYFGVC 167 (535)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 167 (535)
+..+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+++.+..+...+
T Consensus 81 ~~~~~~-------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTTS-------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------------TQLRHANSLLNMGIL 134 (375)
T ss_dssp HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------------SSCCSHHHHHHHHHH
T ss_pred HHHHhc-------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------------HHHHHHHHHHHHHHH
Confidence 998887 899999999999999999999999999999988 578999999999999
Q ss_pred hhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccccccC
Q 009413 168 SGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSKIVLP 247 (535)
Q Consensus 168 lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
+|..++|.+++++.++.+|++.|++.++..++..+..+...+ ++++++++ . ++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~--------------~~------- 187 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP---ETRPVDAP---R--------------TR------- 187 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC---CCSTTTCC---C--------------CC-------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc---ccCCCCcc---c--------------cc-------
Confidence 999999999999999899999998776655444332222222 11111110 0 00
Q ss_pred CCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhH-HHHHHHHHHHhcCCCceeeeecccc
Q 009413 248 IDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPI-WTMLLMFAVIFQQPATFFTKQGMTM 326 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
....+.+ ..+.|+.+..... ..............+.++. +..+.
T Consensus 188 ------~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 232 (375)
T 2gfp_A 188 ------LLTSYKT----------------------------LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMG-AVLGL 232 (375)
T ss_dssp ------TTTCSTH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSH-HHHHH
T ss_pred ------HHHHHHH----------------------------HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 0000000 1111222222212 2222222222222222111 10111
Q ss_pred cccCCCccccCccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 009413 327 KRNIGSNFKIPPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFL-SIIAMIIAAIVETKRLEMN 405 (535)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 405 (535)
+. ...+.+.....++.++..++.+++ .+|.++ ++..+..+ ...+..........
T Consensus 233 ~~-------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~----- 287 (375)
T 2gfp_A 233 SS-------MTVSILFILPIPAAFFGAWFAGRP----NKRFST---------LMWQSVICCLLAGLLMWIPDWFG----- 287 (375)
T ss_dssp HH-------HHHHHHHHTHHHHHHHHHHHHHTT----TTHHHH---------HHHHHHHHHHHTSSSSSHHHHHH-----
T ss_pred CH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------HHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 10 112233334444555555555443 233211 22333332 22222211111000
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009413 406 QQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLITVIEA 477 (535)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~~~~~i~~ 477 (535)
..+.+...+..++.+++.+...+...++..|..| +.||+++|+.+..+.+|..+++.+.+.+.+
T Consensus 288 -------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 -------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556677788899999999999999999999 889999999999999999999998888765
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=219.25 Aligned_cols=393 Identities=12% Similarity=0.021 Sum_probs=221.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|..+.+....++....+..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ ||||+++.+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 35667777777777777777788999999999999999999999999999999999999999995 99999998887765
Q ss_pred HHHHHH---HhhcccccccccCccccch-HHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhh
Q 009413 84 VGLVAL---TSTAFSWAWSTTNKISSSS-AFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFF 159 (535)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~ 159 (535)
++.... .+.. .. ..++.++++.+++.|...+.......+..++ . . ++|+..+
T Consensus 85 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~-~---~~~~~~~ 140 (417)
T 2cfq_A 85 VMFAPFFIFIFGP-------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-------V-S---RRSNFEF 140 (417)
T ss_dssp SCHHHHHHHTHHH-------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-------H-H---HHHTCCH
T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------h-h---hhcccch
Confidence 432211 1211 11 1123455555555554444444444444332 1 0 2356667
Q ss_pred hhhhhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcc
Q 009413 160 KWWYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKL 239 (535)
Q Consensus 160 ~~~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
+..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ ++++.+++ .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~--------------- 199 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATVA--N--------------- 199 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCSS--S---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---cccccccc--c---------------
Confidence 77777789999999999998876 589998887655433322222211111 11100000 0
Q ss_pred cccccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHH-HHHHHHHhcCCCce
Q 009413 240 KNSKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTM-LLMFAVIFQQPATF 318 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 318 (535)
+.+ . +..+.+..++.+ . .++ ++.+......+. ...+....++.+.+
T Consensus 200 ~~~---~--~~~~~~~~~~~~---~------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 200 AVG---A--NHSAFSLKLALE---L------------------------FRQ-PKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp SSS---S--CCCCCCHHHHHH---H------------------------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---c--ccccccHHHHHH---H------------------------hcC-CchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000000000000 0 111 222222211111 11111111111111
Q ss_pred eeeecccccccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 009413 319 FTKQGMTMKRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIV 397 (535)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 397 (535)
+..+ .... + .+. ..+....++.+..++...+.+++.+++.+| +.+..+.++.++.++....
T Consensus 247 ~~~~---~~~~--~-~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~- 308 (417)
T 2cfq_A 247 FTSF---FATG--E-QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSF- 308 (417)
T ss_dssp HHHT---SSSH--H-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHH---Hhcc--C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHH-
Confidence 1100 0000 0 000 012223333344444555555554443322 3455566666665544432
Q ss_pred HHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009413 398 ETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLITVIE 476 (535)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~~~~~i~ 476 (535)
..+.+.+++..++.+++.....+..+.+..|.+|++.||++.+.. +..+++|+.++|.+.|++.
T Consensus 309 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 309 ---------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp ---------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred ---------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 123445555556667776666677788999999999999999994 7888999999999999887
Q ss_pred hhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 009413 477 ALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKS 524 (535)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (535)
+. .++...|.+.+++++++.++.+...++.++
T Consensus 374 ~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 374 ES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred Hh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 61 234556777777777777766655554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=140.31 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcc--cchHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYW--DRYSTILAFSFI 81 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~~~~~~~~ 81 (535)
.|.++.+.+..++..+.++++..+++.|+++.+|++..+.++..+...++..++.++.|+++|| + |||+.+..+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567788888888899999999999999998899999999999999999999999999999999 8 999988887776
Q ss_pred HH-HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhh
Q 009413 82 YV-VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFK 160 (535)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 160 (535)
.. ++.++..+.+.. +.+.+.+..++.|++.+...+...+++.|.+|+ +.|+++.+
T Consensus 330 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~ 385 (451)
T 1pw4_A 330 LVTIATIVYWMNPAG-----------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------------KAAGTAAG 385 (451)
T ss_dssp HHHHHHHHTTSCCTT-----------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------------THHHHHHH
T ss_pred HHHHHHHHHHHhccc-----------CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------------hhhhhHHH
Confidence 66 565555554311 566677777888988888888888999999998 57999999
Q ss_pred hhhhHhhh-hhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 161 WWYFGVCS-GSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 161 ~~~~~~~l-g~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
..+...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999988777766665554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=128.67 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=138.1
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHH-hhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTY-LTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIY 82 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~ 82 (535)
.|.++...+..++....++.+..+++.| +++.+|.+..++++..+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 3556777777788888888888999999 888889999999999999999999999999999999 59999999999888
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.++..+.+ +.+.+ +..++.|++.+...|...++..|.+|+ + ++.+.++.
T Consensus 336 ~~~~~~~~~~~-------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~ 387 (438)
T 3o7q_A 336 MALCLISAFAG-------------GHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQ-------------D-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHCC-------------HHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGG-------------G-HHHHHHHH
T ss_pred HHHHHHHHHcC-------------CcHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc-------------c-ccchhhHH
Confidence 88877777665 44443 444778888899999999999998887 2 56666655
Q ss_pred hhHhhhhhhhhhhhhhhhccccc-hhHHHHHHHHHHHHH
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFG-WVLGFAIPTIAMVTS 200 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~g-w~~~f~~~~~~~~~~ 200 (535)
. ...+|..++|.+.+++.+..| ++..|++..++.++.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5 567999999999999999988 999998766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=130.37 Aligned_cols=174 Identities=7% Similarity=0.016 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCC---ChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 7 CIMLIVIAGKERFAFKGVASNLVTYLTDVVKM---SNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
++...+..++....++....+++.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++..+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 44444444444445555556788888766653 244556777777778888999999999995 99999998888887
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh-h
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW-W 162 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 162 (535)
++.++..+.+ +.+.+++..++.+++.+...+....+++|.+|+ +.|+++.+. +
T Consensus 301 ~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~~ 354 (417)
T 2cfq_A 301 VRIIGSSFAT-------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------------RFSATIYLVCF 354 (417)
T ss_dssp HHHHHHTTCC-------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------------HHHHHHHHHHH
Confidence 7766666554 666677777777777666667778899999998 678998888 5
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFG 207 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 207 (535)
+....+|..++|.++|++.++.|++..|.+.++..+++.++.+..
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 778889999999999999888889888887777666665554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=118.71 Aligned_cols=184 Identities=16% Similarity=0.097 Sum_probs=133.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHH-----HHHHHH
Q 009413 8 IMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTIL-----AFSFIY 82 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~-----~~~~~~ 82 (535)
+.+.+...+....+......++.|+++.++.+..+.++......++..++.++.|+++||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 4445555666666777778899999988888878888888888999999999999999995 9986544 666666
Q ss_pred HHHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 83 VVGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
.++.++........ ...+.. +.+.+.+..++.|++.+...|...+++.|.+|+ +.|+++.++.
T Consensus 365 ~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~ 427 (491)
T 4aps_A 365 GLSFLLMAIPGALY--GTSGKV--SPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------------AFNSQMMSMW 427 (491)
T ss_dssp HHHHTTTHHHHHHC--CCCTTC--CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------------TCSSSSTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCCc--cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------------HHHHHHHHHH
Confidence 66655554432100 000001 566777788889999999999999999999998 5689999999
Q ss_pred hhHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 009413 163 YFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQI 210 (535)
Q Consensus 163 ~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 210 (535)
+...++|..++|.+.+++.+. ++...|.+.+...+++.+..+...++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887654 66667776666555555555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=105.05 Aligned_cols=182 Identities=8% Similarity=0.011 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
+..........+..+..+.......+++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444445555554444445555666667888888888887888888999999999999995 999999999888887
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHH-HHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCL-ISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
+.+.......... +....++..++ ......+..|....+.+|.+|. +.|+++.++.+
T Consensus 355 ~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt-------------~~R~~~~g~~~ 412 (491)
T 4gc0_A 355 GMFSLGTAFYTQA---------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------------AIRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT-------------TTHHHHHHHHH
T ss_pred HHHHHHHHHhccc---------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH-------------hHHHHHHHHHH
Confidence 7766554332110 11222222222 2222233447778999999998 67999999999
Q ss_pred hHhhhhhhhhhhhhhhhcc------ccchhHHHHHHHHHHHHHHHHHHhccc
Q 009413 164 FGVCSGSLLGVTVMSYIQD------TFGWVLGFAIPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~ 209 (535)
....++..+++.+.+.+.+ ..++...|++.+...+++.+..++..|
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 9999999988887766543 234555677666666665555555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=109.90 Aligned_cols=162 Identities=9% Similarity=-0.068 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHH-HH
Q 009413 5 KSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFI-YV 83 (535)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~-~~ 83 (535)
|.++...+..++....++.+..+++.|+++++|.|..+.+.+.+...++..++.++.|+++||+ || + +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHH
Confidence 4566777777888888888889999999988999999999999999999999999999999995 87 2 2333322 22
Q ss_pred HHHH--HHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhh
Q 009413 84 VGLV--ALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKW 161 (535)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 161 (535)
.+.. ........ +.+.+++..++.|++.+...+...+++.|.+|+ +|+++.+.
T Consensus 276 ~~~~~~~~~~~~~~-----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--------------~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWFGVM-----------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF--------------LAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHHHHH-----------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHhhhccc-----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc--------------ccchHHHH
Confidence 2222 12221100 556667778888999999999999999998764 58999999
Q ss_pred hhhHhhhhhhhhhhhhhhhccccchhHHHHHHH
Q 009413 162 WYFGVCSGSLLGVTVMSYIQDTFGWVLGFAIPT 194 (535)
Q Consensus 162 ~~~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~ 194 (535)
.+...++|..++|.+.+.+.+..+|...+.+..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999988778887776543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=92.04 Aligned_cols=137 Identities=9% Similarity=0.068 Sum_probs=96.5
Q ss_pred ccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccc-hhHH
Q 009413 340 TLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETKRLEMNQQYSETVPL-SIFW 418 (535)
Q Consensus 340 ~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 418 (535)
.+.+...++..+..++.+++.+++ .++.+.+.++.++..++.++... .. +.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 111 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAI----------------FEHSVQG 111 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHH----------------TSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHH----------------hcccHHH
Confidence 344444555556666666654443 02335667777777777776665 23 5667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchh
Q 009413 419 LLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFAL---YTSVFGVGSFLSALLITVIEALSSSRNGRSWFSDDMKEA 495 (535)
Q Consensus 419 ~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~~~~~i~~~~~~~~~~~~~~~~~~~~ 495 (535)
+++..++.|++.+...+...+++.|.+|++.|+++.+. .+....+|..+++.+.+.+.+. .
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------------~ 175 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN----------------F 175 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT----------------S
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------c
Confidence 77888899999999999999999999999999877666 8888999999999998887651 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 009413 496 RLDLYYWVLALASALSLLLYVML 518 (535)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~~ 518 (535)
++...|++.+++.+++.+..++.
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 24556666666666655554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.31 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.27 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-27 Score=246.90 Aligned_cols=409 Identities=12% Similarity=-0.011 Sum_probs=242.7
Q ss_pred HHHHHHHHHhhhhhhh---hHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHH
Q 009413 8 IMLIVIAGKERFAFKG---VASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVV 84 (535)
Q Consensus 8 ~~~~~~~~~~~~~~~~---~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~ 84 (535)
|.+....++..+..|. ..+...++++ ++|+|.++.|++.+.+.++..++++++|+++||+ |||+++..+.++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444444444444332 3455667887 5899999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhhh
Q 009413 85 GLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWYF 164 (535)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 164 (535)
+.++++++..... +.+.+++.|++.|++.|...+...++++|.+|+ ++|+++.++.+.
T Consensus 102 ~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------------~~r~~~~~~~~~ 159 (447)
T d1pw4a_ 102 VMLFMGFVPWATS---------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------------KERGGIVSVWNC 159 (447)
T ss_dssp HHHHHHHCHHHHS---------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------------THHHHHHHHHHH
T ss_pred HHhhccccchhhh---------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------------hccccccccccc
Confidence 9888877643221 678899999999999999999999999999998 679999999999
Q ss_pred Hhhhhhhhhhhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhccccccccCCCcc--cccchHHHHHHHHHHHHhcccc
Q 009413 165 GVCSGSLLGVTVMSYIQDT-FGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETL--KCTVSLINIVQAIKAAASKLKN 241 (535)
Q Consensus 165 ~~~lg~~i~~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 241 (535)
+.++|..++|.+++.+... .+|++.|++.....++..++.+...++.+++.+... +.++...+.
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 226 (447)
T d1pw4a_ 160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD------------- 226 (447)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------
T ss_pred ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccc-------------
Confidence 9999999999988876654 479999988777665554544444433332221111 000000000
Q ss_pred cccccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcc---hhhhHHHhhHHh-HHHHHHHHHHHhcCCCc
Q 009413 242 SKIVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHL---VKNAKVVLKLFP-IWTMLLMFAVIFQQPAT 317 (535)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 317 (535)
..+.. + +..+..+.. ....+..+.... ..+..........+.+.
T Consensus 227 -----~~~~~---~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
T d1pw4a_ 227 -----YNEKA---E------------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 274 (447)
T ss_dssp -----------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hhhcc---c------------------------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh
Confidence 00000 0 000000000 011112222111 11111111111111111
Q ss_pred eeeeecccccccCCCcccc-CccccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 009413 318 FFTKQGMTMKRNIGSNFKI-PPATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAI 396 (535)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 396 (535)
+ .....+ .+. ..........+..+++..+.+++.++..++. ..........+..+.......
T Consensus 275 ~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 337 (447)
T d1pw4a_ 275 Y-------LKEVKH--FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--------RGATGVFFMTLVTIATIVYWM 337 (447)
T ss_dssp H-------BTTBSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTS
T ss_pred h-------cccccc--cccchhhhhhhcchhhhhhhhhhhhhhhhhccccc--------cccccchhHHHHHHHHHHHHh
Confidence 1 111100 111 1222333334444455555555444333221 111111111122221111111
Q ss_pred HHHHHhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 009413 397 VETKRLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLSALLITVI 475 (535)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~lg~~~~~~i 475 (535)
....+.+...+..++.+++.....+...++..|.+|++.||+++|+.+...++ |..+++.+.+++
T Consensus 338 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~ 403 (447)
T d1pw4a_ 338 --------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403 (447)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234556667777788888888888889999999999999999999888776 566788899988
Q ss_pred HhhhcCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 009413 476 EALSSSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSRTDNLDNE 532 (535)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 532 (535)
.+.. ++...+++.+++++++.++.+...++.++|+++..+|
T Consensus 404 ~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 404 VDFF----------------GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444 (447)
T ss_dssp HHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHh----------------ChHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Confidence 8722 2345566666777777666665555555554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.1e-24 Score=220.31 Aligned_cols=397 Identities=11% Similarity=0.003 Sum_probs=233.8
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|+.|.+.+..++..+.+....+.++.|+++++|.|.++.|++.+.+.++..+++++.|+++||+ ||||+++.+..+..
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 47789999999999999888889999999999999999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhhh
Q 009413 84 VGLVALTSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWWY 163 (535)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 163 (535)
++..+.......+. .....++.+++.+.+.+...+.......+..++ . .+++....+...
T Consensus 85 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~ 144 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPL---------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-------V----SRRSNFEFGRAR 144 (417)
T ss_dssp HTHHHHHHHTHHHH---------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH-------H----HHHHSCCHHHHH
T ss_pred HHHHHHHHhhhhhh---------HHHHHHHHHHHhhhcccccccchhhcccccccc-------h----hhhhHHHHHHHh
Confidence 88877776652110 112233444444444444444433333333222 1 134555666677
Q ss_pred hHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhccccccccCCCcccccchHHHHHHHHHHHHhcccccc
Q 009413 164 FGVCSGSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSFGSQIYRYKSDETLKCTVSLINIVQAIKAAASKLKNSK 243 (535)
Q Consensus 164 ~~~~lg~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (535)
.....+..++|.+++.+.+. +|+..+........+..+..++..++.++++++++ .. .....
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~~~-- 206 (417)
T d1pv7a_ 145 MFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN----AV-----------GANHS-- 206 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH----HH-----------HSCCC--
T ss_pred hhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhh----hh-----------hhhcc--
Confidence 77788889999988888765 44444444444333333333333332222222111 00 00000
Q ss_pred cccCCCCCCccchhhccccccccccCCCCCcccccccCCCCCCcchhhhHHHhhHHhHHHHHHHHHHHhcCCCceeeeec
Q 009413 244 IVLPIDNSDTVELELQEQKPLCGNKKLGSSKELDEDEYPKSGNHLVKNAKVVLKLFPIWTMLLMFAVIFQQPATFFTKQG 323 (535)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 323 (535)
.. ......+ ... . ...+..................... .. .
T Consensus 207 ------~~--~~~~~~~-~~~-------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--- 247 (417)
T d1pv7a_ 207 ------AF--SLKLALE-LFR-------------Q----------PKLWFLSLYVIGVSCTYDVFDQQFA---NF-F--- 247 (417)
T ss_dssp ------CC--CHHHHHH-HTT-------------S----------SHHHHHHHHHHHHHHHHHHHHHHHH---HH-H---
T ss_pred ------cc--ccccccc-ccc-------------c----------ccccchhhhhHHHHHHHHhhhcccc---cc-c---
Confidence 00 0000000 000 0 0111111111111111111111000 00 0
Q ss_pred ccccccCCCccccCc---cccccchhHHHHHHHHhhhhHHHhhhhHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009413 324 MTMKRNIGSNFKIPP---ATLQSAITVSIILLMPLYDKILIPFIHIIIRCEKGITVMQRMGIGMFLSIIAMIIAAIVETK 400 (535)
Q Consensus 324 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~v~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (535)
...... ..... ........+...+...+.++ +.+|.+ +.+.+.++.++.+++++.+..
T Consensus 248 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~-------~~~~~~~~~~~~~~~~~~~~~---- 308 (417)
T d1pv7a_ 248 TSFFAT----GEQGTRVFGYVTTMGELLNASIMFFAPL----IINRIG-------GKNALLLAGTIMSVRIIGSSF---- 308 (417)
T ss_dssp TTSSSC----HHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHC-------HHHHHHHHHHHHHHHHHHHHT----
T ss_pred cccccc----cccchhhhcccccccccccccchhhhhh----hhcccc-------cccchhhhHHHHHHhhhcccc----
Confidence 000000 00111 11112222333333333333 333432 235566777777777666554
Q ss_pred HhhhhccCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 009413 401 RLEMNQQYSETVPLSIFWLLPQYILLGISDIFTVIGMQEFFYNEVPVRMRTMGFALY-TSVFGVGSFLSALLITVIEALS 479 (535)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~~~~~i~~~~ 479 (535)
..+.+...+..++.+++.+...+...+++.|.+|++.|+++.|+. ++.+.+|..+++.+.|++.|.
T Consensus 309 ------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~- 375 (417)
T d1pv7a_ 309 ------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES- 375 (417)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-
T ss_pred ------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345677778888899999999999999999999999999999985 467789999999999998872
Q ss_pred cCCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 009413 480 SSRNGRSWFSDDMKEARLDLYYWVLALASALSLLLYVMLCKFFKSR 525 (535)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (535)
.++...|++.++++++..++..+..++.+..
T Consensus 376 ---------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 376 ---------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp ---------------HCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred ---------------HCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 2345667777888877777776666655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=9e-12 Score=126.66 Aligned_cols=180 Identities=12% Similarity=0.014 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHHhhhhhhhhHHHHHHHhhhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHH
Q 009413 4 SKSCIMLIVIAGKERFAFKGVASNLVTYLTDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYV 83 (535)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~ 83 (535)
.|.++.+....++.....+++..+.+.|+.+..+.+..+.++......+...++.+++|+++||+ +|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 45667788888888889999999999999999999999999999999999999999999999995 88765444433332
Q ss_pred HHHHHH-HhhcccccccccCccccchHHHHHHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh
Q 009413 84 VGLVAL-TSTAFSWAWSTTNKISSSSAFLFWSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW 162 (535)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 162 (535)
+..... ........ +.+..++..++.|++.++..+....+..|.+|+ +.|+++.++.
T Consensus 327 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------------~~~g~~~g~~ 384 (447)
T d1pw4a_ 327 LVTIATIVYWMNPAG---------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------------KAAGTAAGFT 384 (447)
T ss_dssp HHHHHHHHTTSCCTT---------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------------THHHHHHHHH
T ss_pred HHHHHHHHHHhcccc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------------HHHHHHHHHH
Confidence 222222 11111110 566677777888888888888889999999998 6789999998
Q ss_pred hhHhhh-hhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 009413 163 YFGVCS-GSLLGVTVMSYIQDTFGWVLGFAIPTIAMVTSTAFFSF 206 (535)
Q Consensus 163 ~~~~~l-g~~i~~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 206 (535)
+...++ |.+++|.+.+++.++.||+..|++.....+++.++...
T Consensus 385 ~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 887776 56778999999999999999888766655555444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.3e-12 Score=125.22 Aligned_cols=150 Identities=7% Similarity=-0.027 Sum_probs=126.5
Q ss_pred hhhcCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcccccccccCccccchHHHH
Q 009413 33 TDVVKMSNSSAAKTVNSWCGFTSMLPLVLAPLADSYWDRYSTILAFSFIYVVGLVALTSTAFSWAWSTTNKISSSSAFLF 112 (535)
Q Consensus 33 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (535)
.++.+.+....+.......++..++..+.+++.||+ |||+++..+.++..++.+...+.+ +.+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 316 (417)
T d1pv7a_ 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------SALEVV 316 (417)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------CHHHHH
T ss_pred ccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------ccchhh
Confidence 344555667778888888899999999999999995 999999999999999888888877 888888
Q ss_pred HHHHHHHhcccCCchhhhhhhhccCCCCCCCCCcCCcccccchhhhhhhh-hhHhhhhhhhhhhhhhhhccccchhHHHH
Q 009413 113 WSLCLISLGQGGYNPSLQAFGADQLDSDDELPTTTDNQKSDKKSLFFKWW-YFGVCSGSLLGVTVMSYIQDTFGWVLGFA 191 (535)
Q Consensus 113 ~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~i~~~~~~~l~~~~gw~~~f~ 191 (535)
+..++.|++.+...+...+++.|.+|+ +.|+++.+.. .....+|..++|.++|++.++.||+..|+
T Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 317 ILKTLHMFEVPFLLVGCFKYITSQFEV-------------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCG-------------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCH-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 899999999999999999999999998 6789999975 55667999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhccc
Q 009413 192 IPTIAMVTSTAFFSFGSQ 209 (535)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~ 209 (535)
+.++..++..++.++..+
T Consensus 384 ~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 877766665555444443
|