Citrus Sinensis ID: 009442
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | 2.2.26 [Sep-21-2011] | |||||||
| Q94DB8 | 555 | Inorganic phosphate trans | yes | no | 0.941 | 0.906 | 0.732 | 0.0 | |
| O48639 | 521 | Probable inorganic phosph | yes | no | 0.943 | 0.967 | 0.610 | 0.0 | |
| Q8H074 | 541 | Probable inorganic phosph | no | no | 0.962 | 0.950 | 0.605 | 0.0 | |
| Q8H6H2 | 538 | Probable inorganic phosph | no | no | 0.938 | 0.931 | 0.614 | 0.0 | |
| Q01MW8 | 538 | Probable inorganic phosph | N/A | no | 0.938 | 0.931 | 0.614 | 0.0 | |
| Q8VYM2 | 524 | Inorganic phosphate trans | no | no | 0.940 | 0.958 | 0.607 | 0.0 | |
| Q8H6G8 | 541 | Probable inorganic phosph | no | no | 0.941 | 0.929 | 0.633 | 0.0 | |
| Q494P0 | 535 | Probable inorganic phosph | no | no | 0.941 | 0.940 | 0.602 | 0.0 | |
| Q7XDZ7 | 526 | Probable inorganic phosph | no | no | 0.945 | 0.960 | 0.608 | 0.0 | |
| Q8GSD9 | 528 | Inorganic phosphate trans | no | no | 0.945 | 0.956 | 0.605 | 0.0 |
| >sp|Q94DB8|PT111_ORYSJ Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/505 (73%), Positives = 423/505 (83%), Gaps = 2/505 (0%)
Query: 4 NKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHN 63
+ LAVL+ALD+ARTQ YH+ AIVIAGMGFFTDAYDLFCISTVSKLLGRLYY +
Sbjct: 8 SNLAVLDALDSARTQMYHMKAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYQPDGSTDSK 67
Query: 64 PGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGS 123
PG L NN VIGVALVGTL GQL FG+ GDKLGRK+VYG+TLILM CAI SGLSFGS
Sbjct: 68 PGALSKTANNMVIGVALVGTLMGQLVFGYFGDKLGRKRVYGVTLILMAACAIGSGLSFGS 127
Query: 124 SARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183
S ++VIGTLCFFRFWLGFGIGGDYPLSATIMSEY+NKKTRGAFIAAVFAMQGVGIIFAGL
Sbjct: 128 SRKAVIGTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGVGIIFAGL 187
Query: 184 VSMILSKIFLQLFPAPAFEDDEIFSTQ-PEGDYLWRIVLMLGALPALTTYYWRMKMPETG 242
VSMI+S IFL AP+++ + S Q P DY+WRIVLM+GA PAL T+YWRMKMPET
Sbjct: 188 VSMIVSSIFLTYNKAPSYKGNHDLSRQMPAADYVWRIVLMIGAFPALATFYWRMKMPETA 247
Query: 243 RYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302
RYTAII+GNAKQAA+DM +VL IEI+ E +KL++F N YPLLS EF +RHGLHLIGT
Sbjct: 248 RYTAIIDGNAKQAANDMQKVLSIEIEAEQEKLAKFNAANNYPLLSMEFARRHGLHLIGTT 307
Query: 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWF 362
+TWFLLDIAFYSQNLTQKDIFPAMGL+ A +VNAL E+F+ S+A F+VALLGTFPGYW
Sbjct: 308 TTWFLLDIAFYSQNLTQKDIFPAMGLISGAAEVNALTEMFQISKASFLVALLGTFPGYWV 367
Query: 363 TVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422
TV LI+K+GR++IQL+GFFMMS+FML +GI YDYLK + +LF LY LTFFFANFGPNS
Sbjct: 368 TVALIDKMGRYMIQLIGFFMMSMFMLAMGILYDYLKT-HHFLFGLLYALTFFFANFGPNS 426
Query: 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482
TTFVLPAELFPTRVRSTCHA+SAAAGKAGA++ AF +Q T + K I+ A+++L+ TN
Sbjct: 427 TTFVLPAELFPTRVRSTCHAISAAAGKAGAIVAAFGIQKLTYNSQVKSIKKALIILSITN 486
Query: 483 MLGFCCTFLVTETKGRSLEEISGED 507
MLGF TFLV ET GRSLEEISGED
Sbjct: 487 MLGFFFTFLVPETMGRSLEEISGED 511
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Symbiosis-specific regulated inorganic phosphate (Pi) transporter. Probably involved in symbiosis-mediated Pi uptake in roots colonized by myccorhizal fungi. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O48639|PHT13_ARATH Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/518 (61%), Positives = 392/518 (75%), Gaps = 14/518 (2%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M++ +L VL ALD A+TQ YH TAIVIAGMGFFTDAYDLFC+S V+KLLGRLYY++P +
Sbjct: 1 MADQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRLYYFNPTSA 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVAL GTL GQLFFGWLGDKLGRKKVYGITLI+M++C++ SGLS
Sbjct: 61 K--PGSLPPHVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLIMMILCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
G+SA+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+
Sbjct: 119 LGNSAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G V++ +S IF + FP+P +E D ST P+ DY+WRI++M GALPA TYYWRMKMPE
Sbjct: 179 GGFVALAVSSIFDKKFPSPTYEQDRFLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNK-YPLLSREFFQRHGLHLI 299
T RYTA++ N KQA +DM +VL +++ E K+ K Y L S+EF +RHGLHL+
Sbjct: 239 TARYTALVAKNIKQATADMSKVLQTDLELEERVEDDVKDPKKNYGLFSKEFLRRHGLHLL 298
Query: 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPG 359
GT STWFLLDIAFYSQNL QKDIF A+G + KA +NA+ EVF+ +RA ++AL T PG
Sbjct: 299 GTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPG 358
Query: 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYD-YLKNDNKWLFATLYGLTFFFANF 418
YWFTV I+ IGRF IQL+GFFMM++FM I Y+ ++ DN+ F +Y LTFFFANF
Sbjct: 359 YWFTVAFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNHWILPDNRIGFVVMYSLTFFFANF 418
Query: 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-------- 470
GPN+TTF++PAE+FP R+RSTCH +SAA GKAGA++GAF +D K
Sbjct: 419 GPNATTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPG 478
Query: 471 --IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+++++++L N +G TFLV E KG+SLEE+SGE
Sbjct: 479 IGVKNSLIMLGVINFVGMLFTFLVPEPKGKSLEELSGE 516
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High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H074|PT112_ORYSJ Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/535 (60%), Positives = 397/535 (74%), Gaps = 21/535 (3%)
Query: 3 NNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKH 62
+ +L VLNALD A+TQWYH TAI++AGMGFFTDAYDLFCIS V+KLLGR+YY DPA+P
Sbjct: 5 DQQLQVLNALDAAKTQWYHFTAIIVAGMGFFTDAYDLFCISLVTKLLGRIYYTDPASP-- 62
Query: 63 NPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFG 122
PG LP I V GVAL GTL+GQLFFGWLGDKLGRK VYG+TL+LMVIC+I SGLSF
Sbjct: 63 TPGSLPPNIAAAVNGVALCGTLSGQLFFGWLGDKLGRKSVYGMTLLLMVICSIASGLSFS 122
Query: 123 SSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG 182
+ SV+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GI+ G
Sbjct: 123 HTPTSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 182
Query: 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETG 242
+V++ +S F FPAPA+E + ST P+ DY+WRI+LMLGALPA+ TYYWRMKMPET
Sbjct: 183 VVTLAMSAGFQAAFPAPAYEVNAAASTVPQADYVWRIILMLGALPAILTYYWRMKMPETA 242
Query: 243 RYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302
RYTA++ +AKQA+SDM +VL +EI+ E +KL Y L S F +RHG HL+GT
Sbjct: 243 RYTALVAKDAKQASSDMAKVLQVEIEVEEEKLQDITRGRDYGLFSARFAKRHGAHLLGTA 302
Query: 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWF 362
+TWFL+D+A+YSQNL QKDIF ++ + KA ++ L EVF SRA ++AL GT PGYWF
Sbjct: 303 ATWFLVDVAYYSQNLFQKDIFTSIHWIPKARTMSELEEVFRISRAQTLIALCGTVPGYWF 362
Query: 363 TVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLK-NDNKWLFATLYGLTFFFANFGPN 421
TVFLI+ IGRF IQL+GF M+ FML + I Y + N+ +F LYG TFFFANFGPN
Sbjct: 363 TVFLIDIIGRFKIQLLGFAGMTAFMLGLAIPYHHWTMPGNQVIFVFLYGFTFFFANFGPN 422
Query: 422 STTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK----------I 471
+TTF++PAE+FP R+RSTCH +SAA+GKAGA+IGAF +D +
Sbjct: 423 ATTFIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQPQDKAHVDAGYKPGIGV 482
Query: 472 QHAVLVLAFTNMLGFCCTF-LVTETKGRSLEEISGEDGGVGYYHDTEMSSRPTGA 525
++A+ VLA N++GF T+ LV E+KG+SLEE+SGE D E +S GA
Sbjct: 483 RNALFVLAGCNLVGFLMTWMLVPESKGKSLEEMSGE-------ADDEEASANGGA 530
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High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6H2|PHT14_ORYSJ Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/514 (61%), Positives = 391/514 (76%), Gaps = 13/514 (2%)
Query: 5 KLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNP 64
+L VLNALD+A+TQWYH TAIVIAGMGFFTDAYDLF IS V+KLLGR+YY++PA+ +P
Sbjct: 4 ELKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPAS--KSP 61
Query: 65 GKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSS 124
G LP ++ V GVA GTL GQLFFGWLGDK+GRKKVYG+TL+LMVIC + SGLSFGSS
Sbjct: 62 GSLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSS 121
Query: 125 ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184
A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQG G + G+V
Sbjct: 122 AKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIV 181
Query: 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244
++I+S F F APA+ DD ST P+ DY WRIVLM GA+PAL TYYWRMKMPET RY
Sbjct: 182 AIIVSAAFKSRFDAPAYRDDRTGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARY 241
Query: 245 TAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMST 304
TA++ NAKQAA+DM +VL++EI EE +K + ++ L SR+F +RHG HL+GT
Sbjct: 242 TALVAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVC 301
Query: 305 WFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTV 364
WF+LDIAFYS NL QKDI+ A+ + KA ++AL E+F+ SRA +VAL GT PGYWFTV
Sbjct: 302 WFVLDIAFYSSNLFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTV 361
Query: 365 FLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NKWLFATLYGLTFFFANFGPNST 423
F I+ IGRF+IQL GFF M+ FML + + Y + N F +Y TFFFANFGPNST
Sbjct: 362 FFIDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNST 421
Query: 424 TFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK----------IQH 473
TF++PAE+FP R+RSTCH +SAAAGKAGA++G+F D+ K +++
Sbjct: 422 TFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRN 481
Query: 474 AVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
++ LA N++GF TFLV E+KG+SLEE+SGE+
Sbjct: 482 SLFFLAGCNVIGFFFTFLVPESKGKSLEELSGEN 515
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q01MW8|PHT14_ORYSI Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/514 (61%), Positives = 391/514 (76%), Gaps = 13/514 (2%)
Query: 5 KLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNP 64
+L VLNALD+A+TQWYH TAIVIAGMGFFTDAYDLF IS V+KLLGR+YY++PA+ +P
Sbjct: 4 ELKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPAS--KSP 61
Query: 65 GKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSS 124
G LP ++ V GVA GTL GQLFFGWLGDK+GRKKVYG+TL+LMVIC + SGLSFGSS
Sbjct: 62 GSLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSS 121
Query: 125 ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184
A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQG G + G+V
Sbjct: 122 AKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIV 181
Query: 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244
++I+S F F APA+ DD ST P+ DY WRIVLM GA+PAL TYYWRMKMPET RY
Sbjct: 182 AIIVSAAFKARFDAPAYRDDRAGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARY 241
Query: 245 TAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMST 304
TA++ NAKQAA+DM +VL++EI EE +K + ++ L SR+F +RHG HL+GT
Sbjct: 242 TALVAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVC 301
Query: 305 WFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTV 364
WF+LDIAFYS NL QKDI+ A+ + KA ++AL E+F+ SRA +VAL GT PGYWFTV
Sbjct: 302 WFVLDIAFYSSNLFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTV 361
Query: 365 FLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NKWLFATLYGLTFFFANFGPNST 423
F I+ IGRF+IQL GFF M+ FML + + Y + N F +Y TFFFANFGPNST
Sbjct: 362 FFIDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNST 421
Query: 424 TFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK----------IQH 473
TF++PAE+FP R+RSTCH +SAAAGKAGA++G+F D+ K +++
Sbjct: 422 TFIVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRN 481
Query: 474 AVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
++ LA N++GF TFLV E+KG+SLEE+SGE+
Sbjct: 482 SLFFLAGCNVIGFFFTFLVPESKGKSLEELSGEN 515
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8VYM2|PHT11_ARATH Inorganic phosphate transporter 1-1 OS=Arabidopsis thaliana GN=PHT1-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/520 (60%), Positives = 392/520 (75%), Gaps = 18/520 (3%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ +L VL ALD A+TQ YH TAIVIAGMGFFTDAYDLFC+S V+KLLGR+YY++P +
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVAL GTL+GQLFFGWLGDKLGRKKVYG+TL++M++C++ SGLS
Sbjct: 61 K--PGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLVMMILCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+
Sbjct: 119 FGHEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G V++ +S IF + FPAP + + ST P+ DY+WRI++M GALPA TYYWRMKMPE
Sbjct: 179 GGFVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVL--DIEIDEE-HDKLSQFKEVNKYPLLSREFFQRHGLH 297
T RYTA++ N KQA +DM +VL DIE++E D + K+ Y L S+EF +RHGLH
Sbjct: 239 TARYTALVAKNIKQATADMSKVLQTDIELEERVEDDVKDPKQ--NYGLFSKEFLRRHGLH 296
Query: 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTF 357
L+GT STWFLLDIAFYSQNL QKDIF A+G + KA +NA EVF +RA ++AL T
Sbjct: 297 LLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTV 356
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYD-YLKNDNKWLFATLYGLTFFFA 416
PGYWFTV I+ IGRF IQL GFFMM++FM I Y+ ++K +N+ F +Y LTFFFA
Sbjct: 357 PGYWFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFA 416
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK------ 470
NFGPN+TTF++PAE+FP R+RSTCH +SAAAGKAGA++GAF +D K
Sbjct: 417 NFGPNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYP 476
Query: 471 ----IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+++++++L N +G TFLV E KG+SLEE+SGE
Sbjct: 477 PGIGVKNSLIMLGVLNFIGMLFTFLVPEPKGKSLEELSGE 516
|
High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H6G8|PHT18_ORYSJ Probable inorganic phosphate transporter 1-8 OS=Oryza sativa subsp. japonica GN=PHT1-8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/516 (63%), Positives = 396/516 (76%), Gaps = 13/516 (2%)
Query: 2 SNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPK 61
L VL+ALD A+TQWYH TAIV+AGMGFFTDAYDLFCIS V+KLLGR+YY D A K
Sbjct: 6 QQQHLQVLSALDAAKTQWYHFTAIVVAGMGFFTDAYDLFCISLVTKLLGRIYYTDLA--K 63
Query: 62 HNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSF 121
NPG LP + V GVA GTL GQLFFGWLGDKLGRK VYG+TL++MVIC+I SGLSF
Sbjct: 64 ENPGSLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKSVYGMTLLMMVICSIASGLSF 123
Query: 122 GSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181
+ SV+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GI+
Sbjct: 124 SHTPTSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAG 183
Query: 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPET 241
G+V++I+S F FPAPA++DD ST + DY+WRI+LMLGA+PAL TYYWRMKMPET
Sbjct: 184 GIVTLIISSAFRAGFPAPAYQDDRAGSTVRQADYVWRIILMLGAMPALLTYYWRMKMPET 243
Query: 242 GRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQF--KEVNKYPLLSREFFQRHGLHLI 299
RYTA++ NAKQAA+DM +VL +EI EE DKL Q + + + L SR+F +RHGLHL+
Sbjct: 244 ARYTALVAKNAKQAAADMSKVLQVEIQEEQDKLEQMVTRNSSSFGLFSRQFARRHGLHLV 303
Query: 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPG 359
GT +TWFLLDIAFYSQNL QKDIF ++ + KA ++AL EVF +RA ++AL GT PG
Sbjct: 304 GTATTWFLLDIAFYSQNLFQKDIFTSINWIPKAKTMSALEEVFRIARAQTLIALCGTVPG 363
Query: 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NKWLFATLYGLTFFFANF 418
YWFTVFLI+ +GRF IQL+GFFMM++FML + + Y + N F +Y TFFFANF
Sbjct: 364 YWFTVFLIDIVGRFAIQLLGFFMMTVFMLGLAVPYHHWTTKGNHIGFVVMYAFTFFFANF 423
Query: 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF-----VVQSYTLDEDSKK--- 470
GPNSTTF++PAE+FP R+RSTCH +SAAAGKAGA+IG+F + D K
Sbjct: 424 GPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGSFGFLYAAQDPHKPDAGYKPGIG 483
Query: 471 IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+++++ VLA N+LGF CTFLV E+KG+SLEE+SGE
Sbjct: 484 VRNSLFVLAGCNLLGFICTFLVPESKGKSLEEMSGE 519
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q494P0|PHT17_ARATH Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/518 (60%), Positives = 391/518 (75%), Gaps = 15/518 (2%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ ++L VLNALD A+TQWYH TAI+IAGMGFFTDAYDLFCIS V+KLLGR+YY+ +
Sbjct: 1 MAGDQLNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSE 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP ++ V GVA GTL GQLFFGWLGDKLGRKKVYG+TL++MV+C+I SGLS
Sbjct: 61 K--PGTLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FGS+ ++V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GI+
Sbjct: 119 FGSNPKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILT 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G+ ++I+S F FPAP ++ D + ST P+ DY+WRI+LM+GALPA TYY R KMPE
Sbjct: 179 GGIFAIIVSAAFEAKFPAPTYQIDALASTVPQADYVWRIILMVGALPAAMTYYSRSKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
T RYTA++ +AK AAS+M +VL +EI+ E + N + L S+EF +RHGLHL+G
Sbjct: 239 TARYTALVAKDAKLAASNMSKVLQVEIEAEQQGTED--KSNSFGLFSKEFMKRHGLHLLG 296
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
T STWFLLDIAFYSQNL QKDIF A+G + A +NA++EVF+ +RA ++AL T PGY
Sbjct: 297 TTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGY 356
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFG 419
WFTV I+ IGRF IQ++GFF M++FM + I YD+ + +N+ F +Y LTFFFANFG
Sbjct: 357 WFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFG 416
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQH------ 473
PN+TTFV+PAE+FP R RSTCH +SAA+GK GAM+GAF D K +H
Sbjct: 417 PNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGI 476
Query: 474 ----AVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
+++VL N+LG T LV E+KG+SLEE+SGE+
Sbjct: 477 GVKNSLIVLGVVNLLGMVFTLLVPESKGKSLEEMSGEN 514
|
High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XDZ7|PHT13_ORYSJ Probable inorganic phosphate transporter 1-3 OS=Oryza sativa subsp. japonica GN=PHT1-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/519 (60%), Positives = 384/519 (73%), Gaps = 14/519 (2%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M++ +L VL LD ARTQWYH AIVIAGMGFFTDAYDLFCIS VSKLLGR+YY D A
Sbjct: 1 MADGQLKVLTTLDHARTQWYHFMAIVIAGMGFFTDAYDLFCISLVSKLLGRIYYTDLAG- 59
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
NPG LP ++ V GVAL GTL GQLFFGWLGDKLGRK VYG TL+LMV+C++ SGLS
Sbjct: 60 -DNPGSLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKSVYGFTLVLMVVCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG +A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQG GI+F
Sbjct: 119 FGRTAKGVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
+V++++S F +PAP++ D S PE DY+WRI+LM G +PA TYYWRMKMPE
Sbjct: 179 GAIVALVVSAGFRNAYPAPSYADGRAASLVPEADYVWRIILMFGTVPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDK---LSQFKEVNKYPLLSREFFQRHGLH 297
T RYTA+I NAKQAA+DM +VLD EI E+ D+ ++ N++ L SR+F +RHG+H
Sbjct: 239 TARYTALIARNAKQAAADMSKVLDTEIQEDADRAEAVAAGGAGNEWGLFSRQFVRRHGVH 298
Query: 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTF 357
L+ T STWFLLDIAFYSQNL QKDIF +G + A +NA+ EVF +RA ++AL GT
Sbjct: 299 LVATTSTWFLLDIAFYSQNLFQKDIFSKVGWIPPARTMNAVEEVFRIARAQALIALCGTI 358
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NKWLFATLYGLTFFFA 416
PGYWFTV I+ GRF IQL+GF MM++FML + Y + N F +YG TFFFA
Sbjct: 359 PGYWFTVAFIDVAGRFAIQLMGFAMMTVFMLGLAAPYHHWTTPGNHTGFVVMYGFTFFFA 418
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF----VVQSYTLDEDSKK-- 470
NFGPN+TTF++PAE++P R+RSTCH +SAAAGKAGA++GAF Q E K
Sbjct: 419 NFGPNATTFIVPAEIYPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQDPHKPEAGYKPG 478
Query: 471 --IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
I++A+ VLA TN LG T LV E+KG SLEE+S E+
Sbjct: 479 IGIRNALFVLAGTNFLGMLMTLLVPESKGMSLEEVSKEN 517
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GSD9|PHT12_ORYSJ Inorganic phosphate transporter 1-2 OS=Oryza sativa subsp. japonica GN=PTH1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/517 (60%), Positives = 386/517 (74%), Gaps = 12/517 (2%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ ++L VL LD A+TQWYH AIVIAGMGFFTDAYDLFCI+ V+KLLGRLYY D P
Sbjct: 1 MAGSQLNVLVKLDQAKTQWYHFMAIVIAGMGFFTDAYDLFCIALVTKLLGRLYYTDITKP 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
NPG LP +++ V GVAL GTL GQLFFGWLGDKLGRK VYG TLILMV+C+I SGLS
Sbjct: 61 --NPGTLPPNVSSAVTGVALCGTLAGQLFFGWLGDKLGRKSVYGFTLILMVVCSIASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG + +SVI TLCFFRFWLGFGIGGDYPLSATIMSEYA+KKTRGAFIAAVFAMQG GI+F
Sbjct: 119 FGHTPKSVIATLCFFRFWLGFGIGGDYPLSATIMSEYASKKTRGAFIAAVFAMQGFGILF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
+V++++S F +PAP++ + S P+ DY WR++LM G +PA TYYWRMKMPE
Sbjct: 179 GAIVALVVSAGFRHAYPAPSYAQNPAASLAPQADYTWRLILMFGTIPAGLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKL-SQFKEVNKYPLLSREFFQRHGLHLI 299
T RYTA++ NAKQAA+DM +VL EI+E + + SQ + L SR+F +RHG+HL+
Sbjct: 239 TARYTALVARNAKQAAADMSKVLHAEIEERPEVVESQVVAGETWGLFSRQFMKRHGMHLL 298
Query: 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPG 359
T STWFLLDIAFYSQNL QKDIF +G + A +NAL E++ SRA ++AL GT PG
Sbjct: 299 ATTSTWFLLDIAFYSQNLFQKDIFSKVGWIPPAKTMNALEELYRISRAQALIALCGTIPG 358
Query: 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWL-FATLYGLTFFFANF 418
YWFTV I+ +GRF IQ++GFFMM++FML +G+ YD+ + F LY LTFFFANF
Sbjct: 359 YWFTVAFIDIVGRFWIQIMGFFMMTVFMLALGVPYDHWTHPAHHTGFVVLYALTFFFANF 418
Query: 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-------- 470
GPNSTTF++PAE+FP R+RSTCH +SAA+GKAGA+IGAF D+ +
Sbjct: 419 GPNSTTFIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQDQHNPDAGYSRGIG 478
Query: 471 IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
I++A+ VLA TN LG T LV E+KG SLEE+S ++
Sbjct: 479 IRNALFVLAGTNFLGMLMTLLVPESKGLSLEEMSKDN 515
|
Low-affinity transporter for inorganic phosphate (Pi). Probably involved in internal Pi transport from root to shoot. Acts as a H(+):phosphate symporter. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| 425872912 | 534 | phosphate transporter [Citrus trifoliata | 1.0 | 1.0 | 1.0 | 0.0 | |
| 225462699 | 517 | PREDICTED: inorganic phosphate transport | 0.966 | 0.998 | 0.823 | 0.0 | |
| 118153959 | 529 | PT5 [Nicotiana tabacum] | 0.979 | 0.988 | 0.801 | 0.0 | |
| 225462697 | 520 | PREDICTED: inorganic phosphate transport | 0.970 | 0.996 | 0.809 | 0.0 | |
| 118153916 | 531 | PT4 [Capsicum frutescens] | 0.985 | 0.990 | 0.793 | 0.0 | |
| 170783986 | 529 | phosphate transporter 4 [Petunia x hybri | 0.968 | 0.977 | 0.809 | 0.0 | |
| 57472162 | 529 | inorganic phosphate transporter PT4 [Sol | 0.986 | 0.996 | 0.792 | 0.0 | |
| 66394669 | 545 | phosphate transporter 4 [Solanum lycoper | 0.986 | 0.966 | 0.784 | 0.0 | |
| 350534838 | 545 | mycorrhiza-inducible inorganic phosphate | 0.986 | 0.966 | 0.784 | 0.0 | |
| 118153939 | 529 | PT4 [Nicotiana tabacum] | 0.986 | 0.996 | 0.788 | 0.0 |
| >gi|425872912|gb|AFY06660.1| phosphate transporter [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP
Sbjct: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS
Sbjct: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF
Sbjct: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE
Sbjct: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG
Sbjct: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY
Sbjct: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGP 420
WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGP
Sbjct: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGP 420
Query: 421 NSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAF 480
NSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAF
Sbjct: 421 NSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAF 480
Query: 481 TNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPTGARQSGRMEAI 534
TNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPTGARQSGRMEAI
Sbjct: 481 TNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPTGARQSGRMEAI 534
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462699|ref|XP_002267369.1| PREDICTED: inorganic phosphate transporter 1-11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/521 (82%), Positives = 471/521 (90%), Gaps = 5/521 (0%)
Query: 3 NNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKH 62
++ LAVL+ALD+ARTQWYH+TAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDP K
Sbjct: 2 SDGLAVLHALDSARTQWYHITAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPT--KD 59
Query: 63 NPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFG 122
PGKLP +NNFVIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILM ICAICSGLSFG
Sbjct: 60 KPGKLPHGVNNFVIGVALVGTLSGQLVFGWLGDKLGRKKVYGMTLILMSICAICSGLSFG 119
Query: 123 SSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG 182
S +SVI TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+FAG
Sbjct: 120 FSNKSVITTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIVFAG 179
Query: 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETG 242
LVSMILSK+FL + F ++ I STQPE DYLWRIVLMLGALPAL TYYWRMKMPETG
Sbjct: 180 LVSMILSKLFLLKYETVPFSEEPILSTQPEADYLWRIVLMLGALPALLTYYWRMKMPETG 239
Query: 243 RYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302
RYTA+IEGNAKQAA+DMGRVL+IEI E DK+++FK N+Y L SREFF RHG HLIGTM
Sbjct: 240 RYTALIEGNAKQAAADMGRVLEIEIQAEADKVAEFKAANEYSLWSREFFDRHGRHLIGTM 299
Query: 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWF 362
STWFLLDIAFYSQNLTQKDIFPAM LV K +V+ALRE+FETSRAMFVVALLGTFPGYWF
Sbjct: 300 STWFLLDIAFYSQNLTQKDIFPAMNLVKKDYEVSALREMFETSRAMFVVALLGTFPGYWF 359
Query: 363 TVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422
TVF I++IGRFIIQLVGFFMMSLFMLIIGIKY+YL++DNKWLFA LYGLTFFFANFGPNS
Sbjct: 360 TVFFIDRIGRFIIQLVGFFMMSLFMLIIGIKYEYLRDDNKWLFAVLYGLTFFFANFGPNS 419
Query: 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482
TTFVLPAELFPTRVRSTCHA+SAAAGKAGAMIGAFVV +YTLD + +I+ A++ +A TN
Sbjct: 420 TTFVLPAELFPTRVRSTCHAMSAAAGKAGAMIGAFVVATYTLDGKANEIRIAMITMACTN 479
Query: 483 MLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPT 523
MLGF CTFLVTETKGRSLEEISGEDGG+ ++TEM+SRP+
Sbjct: 480 MLGFFCTFLVTETKGRSLEEISGEDGGI---NETEMASRPS 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118153959|gb|ABK63970.1| PT5 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/530 (80%), Positives = 467/530 (88%), Gaps = 7/530 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M++N L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCI+TVSKLLGRLYYYDPA
Sbjct: 1 MASNNLTVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCITTVSKLLGRLYYYDPAT- 59
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
H PGKLP P+NN+V+GVALVGTLTGQL FGWLGDKLGRKKVYG+TLILMVICA+CSGLS
Sbjct: 60 -HAPGKLPHPVNNWVVGVALVGTLTGQLVFGWLGDKLGRKKVYGLTLILMVICALCSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG S + V+GTLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGVGI+F
Sbjct: 119 FGYSKKVVMGTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGVGIVF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSM +SKIFL + AF DE+FST+PE DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 179 AGLVSMTVSKIFLMNYAGKAFNVDEVFSTEPEADYVWRIVLMLGALPALLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA DMG+VLDIEI E +KL++FK N+YPLLS EFF RHGLHLIG
Sbjct: 239 TGRYTAIIEGNAKQAALDMGKVLDIEIQAEGEKLAKFKAANEYPLLSNEFFMRHGLHLIG 298
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGLV A ++ALRE+FETSRAMFV+ALLGTFPGY
Sbjct: 299 TMSTWFLLDIAFYSQNLTQKDIFPTMGLVSDAKSISALREMFETSRAMFVIALLGTFPGY 358
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLK-NDNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMMS+FM IIG+KYDYLK D+KW FA LYGLTFFFANFG
Sbjct: 359 WFTVFFIEKIGRFKIQLMGFFMMSVFMAIIGVKYDYLKTKDHKWTFAALYGLTFFFANFG 418
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAM+ AF VQ YT D + KI+ A++ LA
Sbjct: 419 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMVSAFGVQQYTQDGNIHKIKKAMIFLA 478
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQS 528
FTNM+GFCCTFLVTETKGRSLEEISGED +T+M S+RP Q
Sbjct: 479 FTNMIGFCCTFLVTETKGRSLEEISGED---EQKDETQMKSTRPVSGHQD 525
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462697|ref|XP_002267327.1| PREDICTED: inorganic phosphate transporter 1-11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/521 (80%), Positives = 468/521 (89%), Gaps = 3/521 (0%)
Query: 3 NNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKH 62
+N LAVL+ALD+ARTQWYH+TAI+IAGMGFFTDAYDLFCIST+SKLLGRLYYYDP
Sbjct: 2 SNSLAVLHALDSARTQWYHITAIIIAGMGFFTDAYDLFCISTISKLLGRLYYYDPVGSPE 61
Query: 63 NPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFG 122
PGKLP +NN V+GVAL GTLTGQL FGWLGDKLGRK+VYG TLILMV+CAICSGLSFG
Sbjct: 62 KPGKLPHNVNNAVVGVALFGTLTGQLVFGWLGDKLGRKRVYGFTLILMVVCAICSGLSFG 121
Query: 123 SSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG 182
S ++VI TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG+GIIFAG
Sbjct: 122 YSPKAVIITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGMGIIFAG 181
Query: 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETG 242
LVSMILSK+FL + +F +D + STQ E D+LWRIVLMLGALPAL TYYWRMKMPETG
Sbjct: 182 LVSMILSKLFLLKYETVSFREDPVRSTQREADFLWRIVLMLGALPALLTYYWRMKMPETG 241
Query: 243 RYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302
RYTA+IEGNAKQAA+DMGRVL+IEI EE DK+++FK N+Y L SREFF RHGLHLIGTM
Sbjct: 242 RYTALIEGNAKQAAADMGRVLEIEIQEEADKVAEFKAANEYSLWSREFFDRHGLHLIGTM 301
Query: 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWF 362
STWFLLDIAFYSQNLTQKDIFPAM LV+K QV+ALRE+FETSRAMFVVALLGTFPGYWF
Sbjct: 302 STWFLLDIAFYSQNLTQKDIFPAMNLVNKDYQVSALREMFETSRAMFVVALLGTFPGYWF 361
Query: 363 TVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422
TVF IE+IGR+IIQLVGFFMMSLFMLIIGIKY+YL++DNKWLFA LYGLTFFFANFGPNS
Sbjct: 362 TVFFIERIGRYIIQLVGFFMMSLFMLIIGIKYEYLRDDNKWLFAVLYGLTFFFANFGPNS 421
Query: 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482
TTFVLPAELFPTRVRSTCHA+SAAAGKAGAMIGAFVV +YTLD + +I+ A++ +A TN
Sbjct: 422 TTFVLPAELFPTRVRSTCHAMSAAAGKAGAMIGAFVVATYTLDGKANEIRVAMITMACTN 481
Query: 483 MLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPT 523
MLGF CTFLVTETKGRSLEEISGEDGG ++T+M S P+
Sbjct: 482 MLGFFCTFLVTETKGRSLEEISGEDGG---NNETQMPSTPS 519
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118153916|gb|ABK63965.1| PT4 [Capsicum frutescens] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/533 (79%), Positives = 469/533 (87%), Gaps = 7/533 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCIST+SKLLGRLYYYDP
Sbjct: 1 MTSDNLVVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCISTISKLLGRLYYYDPT-- 58
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
+ PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMVICA+CSGLS
Sbjct: 59 ANAPGKLPHVANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVICALCSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG SA++VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 119 FGYSAKAVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKSTRGAFIAAVFAMQGVGIIF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSMI+SK+FL + F DE+ ST+PE DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 179 AGLVSMIISKLFLMSYEGKPFNKDEVLSTEPEADYVWRIVLMLGALPALLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA +MG+VLDIEI E DKL+QFK N+YPLLS EFFQRHG HLIG
Sbjct: 239 TGRYTAIIEGNAKQAAINMGKVLDIEIQAEGDKLAQFKAANEYPLLSNEFFQRHGFHLIG 298
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGL A ++ALRE+FETSRAMFV+ALLGTFPGY
Sbjct: 299 TMSTWFLLDIAFYSQNLTQKDIFPVMGLTSNAKSISALREMFETSRAMFVIALLGTFPGY 358
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLK-NDNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMMS+FM IIGIKYDYLK N++KW FATLYGLTFFFANFG
Sbjct: 359 WFTVFFIEKIGRFRIQLMGFFMMSVFMAIIGIKYDYLKTNEHKWTFATLYGLTFFFANFG 418
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAMI AF +Q YT D + +KI+ A+++LA
Sbjct: 419 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMISAFGIQQYTQDGNVQKIEKAMILLA 478
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQSGRM 531
TNM+GFCCTFLVTETKGRSLEEISGED G H+T++ +S+P + M
Sbjct: 479 VTNMVGFCCTFLVTETKGRSLEEISGED---GRQHETQLRTSKPVSSHPDDHM 528
|
Source: Capsicum frutescens Species: Capsicum frutescens Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|170783986|gb|ACB37441.1| phosphate transporter 4 [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/524 (80%), Positives = 464/524 (88%), Gaps = 7/524 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCISTVSKLLGRLYYYDP+
Sbjct: 1 MASDNLVVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPSTK 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMVICA+CSGLS
Sbjct: 61 A--PGKLPHMANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVICALCSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
G S +SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 119 LGYSPKSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKSTRGAFIAAVFAMQGVGIIF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSM +SK+FL F F DE+ ST+PE DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 179 AGLVSMTISKVFLMNFEGKPFNVDEVLSTEPEADYVWRIVLMLGALPALLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA DMG+VLDIEI E DKL+QFK N+Y LLS EFFQRHGLHLIG
Sbjct: 239 TGRYTAIIEGNAKQAAIDMGKVLDIEIQAEGDKLAQFKAANEYSLLSNEFFQRHGLHLIG 298
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGL KA ++ALRE+FETSRAMFV+AL GTFPGY
Sbjct: 299 TMSTWFLLDIAFYSQNLTQKDIFPVMGLTSKANTISALREMFETSRAMFVIALFGTFPGY 358
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQLVGFFMMS+FM IIG+KYDYL+N ++KW FA LYGLTFFFANFG
Sbjct: 359 WFTVFFIEKIGRFKIQLVGFFMMSVFMAIIGVKYDYLRNKEHKWTFAALYGLTFFFANFG 418
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA GKAGAMI AF +Q YT D+D +KI+ A+L+LA
Sbjct: 419 PNSTTFVLPAELFPTRVRSTCHALSAALGKAGAMISAFGIQQYTQDQDVRKIKTAMLLLA 478
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRP 522
FTNM+GFCCTFLVTETKGRSLEEISGED G ++T+M ++RP
Sbjct: 479 FTNMVGFCCTFLVTETKGRSLEEISGED---GRQNETQMKTTRP 519
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|57472162|gb|AAW51149.1| inorganic phosphate transporter PT4 [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/534 (79%), Positives = 467/534 (87%), Gaps = 7/534 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNA DTARTQWYHVTA++IAGMGFFTDAYDLFCI+T+SKLLGRLYYYDP
Sbjct: 1 MASDNLVVLNAPDTARTQWYHVTAVIIAGMGFFTDAYDLFCITTISKLLGRLYYYDPTT- 59
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
H PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMV+CAICSGLS
Sbjct: 60 -HAPGKLPHVANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVLCAICSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG SA+ VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 119 FGYSAKGVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKATRGAFIAAVFAMQGVGIIF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSMI+SK+FL + F+ DEI ST+PE DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 179 AGLVSMIISKLFLMKYEGKPFDVDEILSTEPEADYVWRIVLMLGALPALLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA +MG+VLDIEI E DKL+QFK N+Y LLS EFFQRHGLHLIG
Sbjct: 239 TGRYTAIIEGNAKQAAINMGKVLDIEIQAEGDKLAQFKAANEYSLLSNEFFQRHGLHLIG 298
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGL KA ++ALRE+FETSRAMFV+AL GTFPGY
Sbjct: 299 TMSTWFLLDIAFYSQNLTQKDIFPVMGLTSKANTISALREMFETSRAMFVIALFGTFPGY 358
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLK-NDNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMMS+FM IIGIKYDYLK ++KW FATLYGLTFFFANFG
Sbjct: 359 WFTVFFIEKIGRFRIQLMGFFMMSVFMAIIGIKYDYLKTKEHKWTFATLYGLTFFFANFG 418
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAMI AF +Q YT D + KI+ A++++A
Sbjct: 419 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMISAFGIQQYTQDGNVHKIKTAMILMA 478
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQSGRME 532
TNM+GFCCTFLVTETKGRSLEEISGEDGG ++T+M +S+P Q E
Sbjct: 479 VTNMVGFCCTFLVTETKGRSLEEISGEDGG---KNETQMKTSKPVSGHQDDGWE 529
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|66394669|gb|AAV97730.2| phosphate transporter 4 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/534 (78%), Positives = 465/534 (87%), Gaps = 7/534 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCI+T+SKLLGRLYYYDP
Sbjct: 17 MASDNLVVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCITTISKLLGRLYYYDPTT- 75
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
H PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMV+CA+CSGLS
Sbjct: 76 -HAPGKLPHVANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVLCALCSGLS 134
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
G SA+ VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 135 LGYSAKGVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKATRGAFIAAVFAMQGVGIIF 194
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSMI+SK+FL + F DEI ST+P+ DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 195 AGLVSMIISKLFLMRYEGEPFNVDEILSTEPQADYVWRIVLMLGALPALLTYYWRMKMPE 254
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA +MG+VLDIEI E DKL+QFK N+Y LLS EFFQRHGLHLIG
Sbjct: 255 TGRYTAIIEGNAKQAAINMGKVLDIEIQAESDKLAQFKAANEYSLLSNEFFQRHGLHLIG 314
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGL A ++ALRE+FETSRAMFV+AL GTFPGY
Sbjct: 315 TMSTWFLLDIAFYSQNLTQKDIFPVMGLTSNANTISALREMFETSRAMFVIALFGTFPGY 374
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMMS+FM IIG+KYDYLK+ ++KW FATLYGLTFFFANFG
Sbjct: 375 WFTVFFIEKIGRFRIQLMGFFMMSVFMAIIGVKYDYLKSKEHKWTFATLYGLTFFFANFG 434
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAMI AF +Q YT D + KI+ A+++LA
Sbjct: 435 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMISAFGIQQYTQDGNVHKIKTAMILLA 494
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQSGRME 532
TNM GFCCTFLVTETKGRSLEEI+GEDGG ++T+M +S+P Q E
Sbjct: 495 VTNMAGFCCTFLVTETKGRSLEEITGEDGG---QNETQMKTSKPVSGHQDDGWE 545
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350534838|ref|NP_001234674.1| mycorrhiza-inducible inorganic phosphate transporter [Solanum lycopersicum] gi|62529831|gb|AAX85192.1| mycorrhiza-inducible inorganic phosphate transporter [Solanum lycopersicum] gi|62529833|gb|AAX85193.1| mycorrhiza-inducible inorganic phosphate transporter [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/534 (78%), Positives = 465/534 (87%), Gaps = 7/534 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCI+T+SKLLGRLYYYDP
Sbjct: 17 MASDNLVVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCITTISKLLGRLYYYDPTT- 75
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
H PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMV+CA+CSGLS
Sbjct: 76 -HAPGKLPHVANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVLCALCSGLS 134
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
G SA+ VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 135 LGYSAKGVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKATRGAFIAAVFAMQGVGIIF 194
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AGLVSMI+SK+FL + F DEI ST+P+ DY+WRIVLMLGALPAL TYYWRMKMPE
Sbjct: 195 AGLVSMIISKLFLMRYEGEPFNVDEILSTEPQADYVWRIVLMLGALPALLTYYWRMKMPE 254
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA +MG+VLDIEI E DKL+QFK N+Y LLS EFFQRHGLHLIG
Sbjct: 255 TGRYTAIIEGNAKQAAINMGKVLDIEIQAESDKLAQFKAANEYSLLSNEFFQRHGLHLIG 314
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TMSTWFLLDIAFYSQNLTQKDIFP MGL A ++ALRE+FETSRAMFV+AL GTFPGY
Sbjct: 315 TMSTWFLLDIAFYSQNLTQKDIFPVMGLTSNANTISALREMFETSRAMFVIALFGTFPGY 374
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMMS+FM IIG+KYDYLK+ ++KW FATLYGLTFFFANFG
Sbjct: 375 WFTVFFIEKIGRFRIQLMGFFMMSVFMAIIGVKYDYLKSKEHKWTFATLYGLTFFFANFG 434
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAMI AF +Q YT D + KI+ A+++LA
Sbjct: 435 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMISAFGIQQYTQDGNVHKIKTAMILLA 494
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQSGRME 532
TNM GFCCTFLVTETKGRSLEEI+GEDGG ++T+M +S+P Q E
Sbjct: 495 VTNMAGFCCTFLVTETKGRSLEEITGEDGG---QNETQMKTSKPVSGHQDDGWE 545
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118153939|gb|ABK63967.1| PT4 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/534 (78%), Positives = 467/534 (87%), Gaps = 7/534 (1%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+++ L VLNALDTARTQWYHVTA++IAGMGFFTDAYDLFCISTVSKLLGRLYYYDPA
Sbjct: 1 MASDNLVVLNALDTARTQWYHVTAVIIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPATK 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
PGKLP NN+VIGVALVGTL+GQL FGWLGDKLGRKKVYG+TLILMV+CA+CSGLS
Sbjct: 61 A--PGKLPHMANNWVIGVALVGTLSGQLVFGWLGDKLGRKKVYGLTLILMVVCALCSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG SA+SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK TRGAFIAAVFAMQGVGIIF
Sbjct: 119 FGYSAKSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKSTRGAFIAAVFAMQGVGIIF 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
AG VSMI+S +FL ++ F+ DEI ST+PE DY+WRIV M+GALPAL TYYWRMKMPE
Sbjct: 179 AGPVSMIISNVFLIMYGGKPFDQDEILSTEPEADYVWRIVSMVGALPALVTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
TGRYTAIIEGNAKQAA +MG+VLDIEI E DKL+QFK N+YPLLS EFFQRHGLHLIG
Sbjct: 239 TGRYTAIIEGNAKQAAINMGKVLDIEIQAEGDKLAQFKAANEYPLLSSEFFQRHGLHLIG 298
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
TM+TWFLLDIAFYSQNLTQKDIFP MGL KA ++ALRE+FETSRAMFV+ALLGTFPGY
Sbjct: 299 TMTTWFLLDIAFYSQNLTQKDIFPVMGLASKAQHISALREMFETSRAMFVIALLGTFPGY 358
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLK-NDNKWLFATLYGLTFFFANFG 419
WFTVF IEKIGRF IQL+GFFMM++FM IIG+KYDYLK ++KW FATLYGLTFFFANFG
Sbjct: 359 WFTVFFIEKIGRFRIQLMGFFMMTVFMAIIGVKYDYLKTKEHKWAFATLYGLTFFFANFG 418
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
PNSTTFVLPAELFPTRVRSTCHALSAA+GKAGAMI AF +Q YT D + KI+ A+++LA
Sbjct: 419 PNSTTFVLPAELFPTRVRSTCHALSAASGKAGAMISAFGIQQYTQDGNVHKIKKAMMLLA 478
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEM-SSRPTGARQSGRME 532
TNMLGF TFLVTETKGRSLEEISGED G ++T+M +S+P A Q E
Sbjct: 479 VTNMLGFAFTFLVTETKGRSLEEISGED---GRRNETQMKTSKPVSAHQDDGWE 529
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| TAIR|locus:2176471 | 521 | PHT1;3 "phosphate transporter | 0.943 | 0.967 | 0.590 | 3.9e-163 | |
| TAIR|locus:2176481 | 524 | PHT1;2 "phosphate transporter | 0.940 | 0.958 | 0.588 | 3.1e-161 | |
| TAIR|locus:2176461 | 524 | PHT1;1 "AT5G43350" [Arabidopsi | 0.940 | 0.958 | 0.586 | 8.4e-161 | |
| TAIR|locus:2064895 | 534 | PHT1;4 "phosphate transporter | 0.945 | 0.945 | 0.582 | 2e-159 | |
| TAIR|locus:2102450 | 535 | PHT1;7 "AT3G54700" [Arabidopsi | 0.941 | 0.940 | 0.583 | 4.1e-159 | |
| TAIR|locus:2046432 | 542 | PHT1;5 "phosphate transporter | 0.945 | 0.931 | 0.585 | 1.3e-157 | |
| TAIR|locus:2176451 | 516 | PHT1;6 "phosphate transporter | 0.938 | 0.970 | 0.544 | 2.7e-148 | |
| TAIR|locus:2011681 | 532 | PHT1;9 "AT1G76430" [Arabidopsi | 0.917 | 0.921 | 0.451 | 5.9e-112 | |
| TAIR|locus:2037390 | 534 | PHT1;8 "phosphate transporter | 0.900 | 0.900 | 0.454 | 6.3e-108 | |
| TAIR|locus:504955256 | 280 | AT4G08878 "AT4G08878" [Arabido | 0.455 | 0.867 | 0.632 | 2.9e-80 |
| TAIR|locus:2176471 PHT1;3 "phosphate transporter 1;3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
Identities = 306/518 (59%), Positives = 379/518 (73%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M++ +L VL ALD A+TQ YH TAIVIAGMGFFTDAYDLFC+S V+KLLGRLYY++P +
Sbjct: 1 MADQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRLYYFNPTSA 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVAL GTL GQLFFGWLGDKLGRKKVYGITLI+M++C++ SGLS
Sbjct: 61 K--PGSLPPHVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLIMMILCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
G+SA+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+
Sbjct: 119 LGNSAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G V++ +S IF + FP+P +E D ST P+ DY+WRI++M GALPA TYYWRMKMPE
Sbjct: 179 GGFVALAVSSIFDKKFPSPTYEQDRFLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNK-YPLLSREFFQRHGLHLI 299
T RYTA++ N KQA +DM +VL +++ E K+ K Y L S+EF +RHGLHL+
Sbjct: 239 TARYTALVAKNIKQATADMSKVLQTDLELEERVEDDVKDPKKNYGLFSKEFLRRHGLHLL 298
Query: 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPG 359
GT STWFLLDIAFYSQNL QKDIF A+G + KA +NA+ EVF+ +RA ++AL T PG
Sbjct: 299 GTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPG 358
Query: 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDY-LKNDNKWLFATLYGLTFFFANF 418
YWFTV I+ IGRF IQL+GFFMM++FM I Y++ + DN+ F +Y LTFFFANF
Sbjct: 359 YWFTVAFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNHWILPDNRIGFVVMYSLTFFFANF 418
Query: 419 GPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKK-------- 470
GPN+TTF++PAE+FP R+RSTCH F +D K
Sbjct: 419 GPNATTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPG 478
Query: 471 --IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+++++++L N +G TFLV E KG+SLEE+SGE
Sbjct: 479 IGVKNSLIMLGVINFVGMLFTFLVPEPKGKSLEELSGE 516
|
|
| TAIR|locus:2176481 PHT1;2 "phosphate transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
Identities = 306/520 (58%), Positives = 380/520 (73%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ +L VL ALD A+TQ YH TAIVIAGMGFFTDAYDLFC+S V+KLLGR+YY++P +
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVAL GTL+GQLFFGWLGDKLGRKKVYG+TLI+M++C++ SGLS
Sbjct: 61 K--PGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLIMMILCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG+ A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+
Sbjct: 119 FGNEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G V++ +S IF + FPAP + + ST P+ DY+WRI++M GALPA TYYWRMKMPE
Sbjct: 179 GGFVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVL--DIEIDEE-HDKLSQFKEVNKYPLLSREFFQRHGLH 297
T RYTA++ N KQA +DM +VL DIE++E D + ++ Y L S+EF +RHGLH
Sbjct: 239 TARYTALVAKNIKQATADMSKVLQTDIELEERVEDDVKDPRQ--NYGLFSKEFLRRHGLH 296
Query: 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTF 357
L+GT STWFLLDIAFYSQNL QKDIF A+G + KA +NA EVF +RA ++AL T
Sbjct: 297 LLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTV 356
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDY-LKNDNKWLFATLYGLTFFFA 416
PGYWFTV I+ IGRF IQL GFFMM++FM I Y++ +K +N+ F +Y LTFFFA
Sbjct: 357 PGYWFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFA 416
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKKI----- 471
NFGPN+TTF++PAE+FP R+RSTCH F ++D K+
Sbjct: 417 NFGPNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNQDKAKVDAGYP 476
Query: 472 -----QHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+++++VL N +G TFLV E KG+SLEE+SGE
Sbjct: 477 PGIGVKNSLIVLGVLNFIGMLFTFLVPEPKGKSLEELSGE 516
|
|
| TAIR|locus:2176461 PHT1;1 "AT5G43350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 305/520 (58%), Positives = 378/520 (72%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ +L VL ALD A+TQ YH TAIVIAGMGFFTDAYDLFC+S V+KLLGR+YY++P +
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVAL GTL+GQLFFGWLGDKLGRKKVYG+TL++M++C++ SGLS
Sbjct: 61 K--PGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLVMMILCSVASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG A+ V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI+
Sbjct: 119 FGHEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G V++ +S IF + FPAP + + ST P+ DY+WRI++M GALPA TYYWRMKMPE
Sbjct: 179 GGFVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVL--DIEIDEE-HDKLSQFKEVNKYPLLSREFFQRHGLH 297
T RYTA++ N KQA +DM +VL DIE++E D + K+ Y L S+EF +RHGLH
Sbjct: 239 TARYTALVAKNIKQATADMSKVLQTDIELEERVEDDVKDPKQ--NYGLFSKEFLRRHGLH 296
Query: 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTF 357
L+GT STWFLLDIAFYSQNL QKDIF A+G + KA +NA EVF +RA ++AL T
Sbjct: 297 LLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTV 356
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDY-LKNDNKWLFATLYGLTFFFA 416
PGYWFTV I+ IGRF IQL GFFMM++FM I Y++ +K +N+ F +Y LTFFFA
Sbjct: 357 PGYWFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFA 416
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKKI----- 471
NFGPN+TTF++PAE+FP R+RSTCH F +D K+
Sbjct: 417 NFGPNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYP 476
Query: 472 -----QHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
++++++L N +G TFLV E KG+SLEE+SGE
Sbjct: 477 PGIGVKNSLIMLGVLNFIGMLFTFLVPEPKGKSLEELSGE 516
|
|
| TAIR|locus:2064895 PHT1;4 "phosphate transporter 1;4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 303/520 (58%), Positives = 379/520 (72%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ +L VLNALD A+TQWYH TAI+IAGMGFFTDAYDLFCIS V+KLLGR+YY+
Sbjct: 1 MAREQLQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGAQ 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVA GTL GQLFFGWLGDKLGRKKVYG+TL++MV+C+I SGLS
Sbjct: 61 K--PGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG ++V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF++AVFAMQG GI+
Sbjct: 119 FGHEPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFVSAVFAMQGFGIMA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G+ ++I+S F FP+PA+ DD + ST P+ D +WRI+LM GA+PA TYY R KMPE
Sbjct: 179 GGIFAIIISSAFEAKFPSPAYADDALGSTIPQADLVWRIILMAGAIPAAMTYYSRSKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQF-KEVNK-YPLLSREFFQRHGLHL 298
T RYTA++ +AKQAASDM +VL +EI+ E KL + KE +K + L S+EF RHGLHL
Sbjct: 239 TARYTALVAKDAKQAASDMSKVLQVEIEPEQQKLEEISKEKSKAFGLFSKEFMSRHGLHL 298
Query: 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFP 358
+GT STWFLLDIAFYSQNL QKDIF A+G + A +NA++EVF+ +RA ++AL T P
Sbjct: 299 LGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQSMNAIQEVFKIARAQTLIALCSTVP 358
Query: 359 GYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFAN 417
GYWFTV I+ IGRF IQ++GFF M++FM + I Y++ + +N+ F +Y LTFFFAN
Sbjct: 359 GYWFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYNHWTHKENRIGFVIMYSLTFFFAN 418
Query: 418 FGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKK------- 470
FGPN+TTFV+PAE+FP R RSTCH F + D K
Sbjct: 419 FGPNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPP 478
Query: 471 ---IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
++++++VL N LG TFLV E+KG+SLEE+SGE+
Sbjct: 479 GIGVRNSLIVLGVVNFLGILFTFLVPESKGKSLEEMSGEN 518
|
|
| TAIR|locus:2102450 PHT1;7 "AT3G54700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 302/518 (58%), Positives = 378/518 (72%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ ++L VLNALD A+TQWYH TAI+IAGMGFFTDAYDLFCIS V+KLLGR+YY+ +
Sbjct: 1 MAGDQLNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSE 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP ++ V GVA GTL GQLFFGWLGDKLGRKKVYG+TL++MV+C+I SGLS
Sbjct: 61 K--PGTLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FGS+ ++V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GI+
Sbjct: 119 FGSNPKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILT 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G+ ++I+S F FPAP ++ D + ST P+ DY+WRI+LM+GALPA TYY R KMPE
Sbjct: 179 GGIFAIIVSAAFEAKFPAPTYQIDALASTVPQADYVWRIILMVGALPAAMTYYSRSKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300
T RYTA++ +AK AAS+M +VL +EI+ E + N + L S+EF +RHGLHL+G
Sbjct: 239 TARYTALVAKDAKLAASNMSKVLQVEIEAEQQGTED--KSNSFGLFSKEFMKRHGLHLLG 296
Query: 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360
T STWFLLDIAFYSQNL QKDIF A+G + A +NA++EVF+ +RA ++AL T PGY
Sbjct: 297 TTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGY 356
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFG 419
WFTV I+ IGRF IQ++GFF M++FM + I YD+ + +N+ F +Y LTFFFANFG
Sbjct: 357 WFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFG 416
Query: 420 PNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKKIQH------ 473
PN+TTFV+PAE+FP R RSTCH F D K +H
Sbjct: 417 PNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGI 476
Query: 474 ----AVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
+++VL N+LG T LV E+KG+SLEE+SGE+
Sbjct: 477 GVKNSLIVLGVVNLLGMVFTLLVPESKGKSLEEMSGEN 514
|
|
| TAIR|locus:2046432 PHT1;5 "phosphate transporter 1;5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
Identities = 305/521 (58%), Positives = 373/521 (71%)
Query: 1 MSNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANP 60
M+ VLNALD A+TQ YH TAIVIAGMGFFTDAYDLF IS V+KLLGR+YY+ ++
Sbjct: 1 MAKKGKEVLNALDAAKTQMYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYHVDSSK 60
Query: 61 KHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120
K PG LP + V GVA GTL GQLFFGWLGDKLGRKKVYGITL+LMV+C++ SGLS
Sbjct: 61 K--PGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGITLMLMVLCSLGSGLS 118
Query: 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180
FG SA V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GI+
Sbjct: 119 FGHSANGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILA 178
Query: 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
G+VS+I+S F F AP +E D + ST P+ DY+WRIVLM GA+PAL TYYWRMKMPE
Sbjct: 179 GGIVSLIVSSTFDHAFKAPTYEVDPVGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPE 238
Query: 241 TGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNK---YPLLSREFFQRHGLH 297
T RYTA++ N KQAASDM +VL +++ E + S N + L +REF +RHGLH
Sbjct: 239 TARYTALVARNTKQAASDMSKVLQVDLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLH 298
Query: 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTF 357
L+GT +TWFLLDIA+YS NL QKDI+ A+G + A +NA+ EVF S+A ++AL GT
Sbjct: 299 LLGTTTTWFLLDIAYYSSNLFQKDIYTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTV 358
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFA 416
PGYWFTV I+ +GRF IQL+GF M++FM + I YD+ ++ +N+ F +Y LT FFA
Sbjct: 359 PGYWFTVAFIDILGRFFIQLMGFIFMTIFMFALAIPYDHWRHRENRIGFLIMYSLTMFFA 418
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKK------ 470
NFGPN+TTFV+PAE+FP R+RSTCH F DS+K
Sbjct: 419 NFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYP 478
Query: 471 ----IQHAVLVLAFTNMLGFCCTFLVTETKGRSLEEISGED 507
+++++L+LA N LG T LV E+KG+SLEEIS ED
Sbjct: 479 PGIGVRNSLLMLACVNFLGIVFTLLVPESKGKSLEEISRED 519
|
|
| TAIR|locus:2176451 PHT1;6 "phosphate transporter 1;6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 277/509 (54%), Positives = 369/509 (72%)
Query: 1 MSNNKL-AVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPAN 59
M+N + ++L ALD A+TQWYHVTA+V++GMGFFTD+YDLF IS ++KLLGR+YY P +
Sbjct: 1 MANEEQGSILKALDVAKTQWYHVTAVVVSGMGFFTDSYDLFVISLITKLLGRIYYQVPGS 60
Query: 60 PKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL 119
+PG LP I+ V GVA GT GQ+FFG LGDKLGRK+VYG+TL++M IC+ICSGL
Sbjct: 61 S--SPGSLPDGISAAVSGVAFAGTFIGQIFFGCLGDKLGRKRVYGLTLLIMTICSICSGL 118
Query: 120 SFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179
S G ++V+ TLCFFRFWLGFGIGGDYPLSATIMSEY+NK+TRGAFIAAVF MQG+GI+
Sbjct: 119 SLGRDPKTVMVTLCFFRFWLGFGIGGDYPLSATIMSEYSNKRTRGAFIAAVFGMQGIGIL 178
Query: 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMP 239
AG VS+++S +F FP+ A+ D ST P+ DY+WRI+LM+GALPAL TYYWRMKMP
Sbjct: 179 AAGAVSLLVSAVFESKFPSRAYILDGAASTVPQADYVWRIILMVGALPALLTYYWRMKMP 238
Query: 240 ETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFK-EVNKYPLLSREFFQRHGLHL 298
ET RYTA++ NA+QAA DM +VL+++I+ K Q + +++ L S +F +RHGLHL
Sbjct: 239 ETARYTALVSKNAEQAALDMTKVLNVDIEASAAKNDQARVSSDEFGLFSMKFLRRHGLHL 298
Query: 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFP 358
+GT STWFLLDIAFYSQNL QKDIF +G + A +NA++E++ ++A ++A T P
Sbjct: 299 LGTASTWFLLDIAFYSQNLFQKDIFTTIGWLPSAKTMNAIQELYMIAKAQTIIACCSTVP 358
Query: 359 GYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NKWLFATLYGLTFFFAN 417
GY+FTV I+ +GR IQ++GF MM++FML + I Y + N+ F LY TFFF+N
Sbjct: 359 GYFFTVGFIDYMGRKKIQIMGFAMMTIFMLSLAIPYHHWTLPANRIGFVVLYSFTFFFSN 418
Query: 418 FGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXXFVVQSYTLDEDSKKIQHAVLV 477
FGPN+TTF++PAE+FP R+RSTCH F ++ + + + + +
Sbjct: 419 FGPNATTFIVPAEIFPARIRSTCHGISAASGKAGAMVGSF---GFSALVKALGMSNTLYI 475
Query: 478 LAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+A N+LG TF + ET G+SLEE+SGE
Sbjct: 476 MAGINLLGLLLTFTIPETNGKSLEELSGE 504
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| TAIR|locus:2011681 PHT1;9 "AT1G76430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 236/523 (45%), Positives = 323/523 (61%)
Query: 5 KLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNP 64
+L++L+ALD AR QWYH AI++AGMG FTDAYDLFCI+ + K++ ++YY+ K +
Sbjct: 3 ELSLLSALDAARIQWYHFKAIIVAGMGLFTDAYDLFCIAPIMKMISQIYYH-----KDSI 57
Query: 65 GKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSS 124
G T + + +AL+GT GQL FG+LGD++GR+KVYG++L++MV + G S ++
Sbjct: 58 G---TALLSTSYAIALLGTALGQLIFGYLGDRVGRRKVYGLSLLIMVFSSFGCGFSVCTT 114
Query: 125 ARS-VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183
RS V+ +L FFRF LG GIGGDYPLSATIMSE+ANK+TRGAFIAAVF+MQG+GI+ +
Sbjct: 115 RRSCVMVSLGFFRFVLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILMSSA 174
Query: 184 VSMILSKIFLQLFPAPAFEDDEIFSTQ----PEGDYLWRIVLMLGALPALTTYYWRMKMP 239
V+M++ F + E + + PE D WR++LM+GALPA T+YWRM MP
Sbjct: 175 VTMVVCLAFKNAGEGSS-EKTNVAGLETLAPPESDIAWRLILMIGALPAALTFYWRMLMP 233
Query: 240 ETGRYTAIIEGNAKQAASDMGRVLDIEI-----DEEHDKLSQFKEVNKYPLLSREFFQRH 294
ET RYTA++E N QAA DM RV+ + + ++ +L Q + Y L SR F H
Sbjct: 234 ETARYTALVENNVVQAAKDMQRVMSVSMISQITEDSSSELEQPPSSSSYKLFSRRFLSLH 293
Query: 295 GLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALL 354
G L + WFL+D+ FY+ NL IF N FE ++ +VA
Sbjct: 294 GRDLFAASANWFLVDVVFYTSNLLLSQIFNFSN--KPLNSTNVYDSAFEVAKLAAIVAAC 351
Query: 355 GTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYL--KND--NKWLFATLYG 410
T PGYWFTV+ I+KIGR IQ++GFF+M++ L+ GI Y + K++ NK F LYG
Sbjct: 352 STIPGYWFTVYFIDKIGRVKIQMMGFFLMAVVYLVAGIPYSWYWSKHEKTNKG-FMVLYG 410
Query: 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXX--FVVQSYTLDEDS 468
L FFF+NFGPN+TTF++PAELFP R RSTCH F+ + +ED
Sbjct: 411 LIFFFSNFGPNTTTFIIPAELFPARFRSTCHGISGAAGKFGAIVGTVGFLWATRHHEEDG 470
Query: 469 ----KKIQHAVLVLAFTNMLGFCCTFLVT-ETKGRSLEEISGE 506
K+++ A L+L + G T+L T ET GRSLEE E
Sbjct: 471 FPDVKRVRIAFLILGGVCIAGMIVTYLFTRETMGRSLEENEDE 513
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| TAIR|locus:2037390 PHT1;8 "phosphate transporter 1;8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 235/517 (45%), Positives = 310/517 (59%)
Query: 6 LAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPG 65
+ VL++LD ARTQWYH AI++AGMG FTDAYDLFCI+ V K++ +YY N
Sbjct: 3 IKVLSSLDVARTQWYHFKAIIVAGMGLFTDAYDLFCIAPVMKMISHVYY--------NGD 54
Query: 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSA 125
+ T + + +AL+GT TGQL FG+LGD++GR++VYG+ LI+M++ + G S ++
Sbjct: 55 SINTAVLSTSYAIALLGTATGQLVFGYLGDRVGRRRVYGLCLIIMILSSFGCGFSVCTTR 114
Query: 126 RS-VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184
RS V+ +L FFRF+LG GIGGDYPLSATIMSE+ANK+TRGAFIAAVF+MQG+GI+ + V
Sbjct: 115 RSCVMVSLGFFRFFLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILVSSAV 174
Query: 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244
+M + F + E D T E D WR++LM+GALPA T+YWRM MPET RY
Sbjct: 175 TMAVCVAFKR--SGGGLEVDAAAPT--EADLAWRLILMIGALPAALTFYWRMLMPETARY 230
Query: 245 TAIIEGNAKQAASDMGRVLDIE--IDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302
TA++E N QAA DM RV+ DE Y L SR FF+ HG L
Sbjct: 231 TALVENNIVQAAKDMQRVMSRSHISDEATTDPPPPPPPPSYKLFSRCFFRLHGRDLFAAS 290
Query: 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQV--NALREVFETSRAMFVVALLGTFPGY 360
WFL+DI FY+ NL IF K P N FE + ++A T PGY
Sbjct: 291 FNWFLVDIVFYTSNLLLSHIFSHYS---KKPSTAENVYDAAFEVAELGAIIAACSTIPGY 347
Query: 361 WFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYL----KNDNKWLFATLYGLTFFFA 416
WFTV+ I+KIGR IQ++GFF M++ L+ GI Y + +++NK F LYGL FFF
Sbjct: 348 WFTVYFIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKHEHNNKG-FMVLYGLVFFFC 406
Query: 417 NFGPNSTTFVLPAELFPTRVRSTCHXXXXXXXXXXXXXXX--FVVQSYTLDEDSK----- 469
NFGPN+TTF++PAE FP R RSTCH F+ + ++ D K
Sbjct: 407 NFGPNTTTFIIPAEHFPARFRSTCHGISGAAGKLGAIVGTVGFLWATKKMESDDKNQIYP 466
Query: 470 ---KIQHAVLVLAFTNMLGFCCTFLVT-ETKGRSLEE 502
+++ A L+L + G T+ T ET GRSLEE
Sbjct: 467 EVNRMRIAFLILGGVCIAGILVTYFFTKETMGRSLEE 503
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| TAIR|locus:504955256 AT4G08878 "AT4G08878" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 155/245 (63%), Positives = 192/245 (78%)
Query: 31 GFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFF 90
GFFTD+YDLF IS ++KLLGR+YY P + +PG LP I+ V GVA GT GQ+FF
Sbjct: 13 GFFTDSYDLFVISLITKLLGRIYYQVPGSS--SPGSLPDGISVAVSGVAFAGTFLGQIFF 70
Query: 91 GWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150
G LGDKLGRK+VYG+TL++M IC+I S LSFG ++V+ TLCFFRFWLGFGIGGDYPLS
Sbjct: 71 GCLGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDYPLS 130
Query: 151 ATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQ 210
ATIM EYANK+TRGAFIA+VFAMQGVGI+ AG VS+++S +F FP+ A+ D ST
Sbjct: 131 ATIMFEYANKRTRGAFIASVFAMQGVGILAAGGVSLLVSYLFEIEFPSRAYILDGAASTV 190
Query: 211 PEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEE 270
P+ DY+WRI+LM+GALPAL TYYWRMKMPET RYTA++ NA+QAA DM + + E+DE+
Sbjct: 191 PQADYVWRIILMVGALPALLTYYWRMKMPETARYTALVAKNAEQAALDMNKEIFTEVDEK 250
Query: 271 HDKLS 275
L+
Sbjct: 251 RFALT 255
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48639 | PHT13_ARATH | No assigned EC number | 0.6100 | 0.9438 | 0.9673 | yes | no |
| Q9P6J9 | YHD1_SCHPO | No assigned EC number | 0.3308 | 0.8745 | 0.8150 | yes | no |
| Q01MW8 | PHT14_ORYSI | No assigned EC number | 0.6147 | 0.9382 | 0.9312 | N/A | no |
| P25297 | PHO84_YEAST | No assigned EC number | 0.3376 | 0.9232 | 0.8398 | yes | no |
| Q94DB8 | PT111_ORYSJ | No assigned EC number | 0.7326 | 0.9419 | 0.9063 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | PtrPHT1-10 | high affinity inorganic phosphate transporter (511 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.X.1304.1 | hypothetical protein (502 aa) | • | 0.430 | |||||||
 | gw1.164.27.1 | hypothetical protein (492 aa) | • | 0.408 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 534 | |||
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.0 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-48 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-23 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-19 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 9e-19 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-15 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-12 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-11 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 3e-09 | |
| PRK10642 | 490 | PRK10642, PRK10642, proline/glycine betaine transp | 1e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-08 | |
| PRK09952 | 438 | PRK09952, PRK09952, shikimate transporter; Provisi | 4e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 4e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-04 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 2e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 5e-04 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.002 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 607 bits (1568), Expect = 0.0
Identities = 254/512 (49%), Positives = 329/512 (64%), Gaps = 23/512 (4%)
Query: 8 VLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKL 67
L DTA W H AIVIAG+GFFTD+YDLFCIS V+K+LG +YY H G L
Sbjct: 1 ALEEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYY-------HGKGPL 53
Query: 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARS 127
P+ ++ V G A +GTL GQLFFGWL DKLGRK+VYG+ LI+M+I + SGLS GSS +S
Sbjct: 54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKS 113
Query: 128 VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187
V+ TLCF+RFWLG GIGGDYPLSA I SE+A KK RGA +AAVFAMQG GI+ +V++I
Sbjct: 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173
Query: 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAI 247
+ F A A E S P DY+WRI++ GA+PAL Y+R+ +PET RYTA
Sbjct: 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD 233
Query: 248 IEGNAKQAASDMGRVLDIEIDEEHDKL-SQFKEV-----NKYPLLSREFFQRHGLHLIGT 301
+ + +QAASDM VL ++I+ E D++ V + + F RHG HL+GT
Sbjct: 234 VAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGT 293
Query: 302 MSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYW 361
+WFLLDIAFY NL QK I A+G A NA E+++T+ ++AL GT PGYW
Sbjct: 294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYW 353
Query: 362 FTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPN 421
TVFL++ IGR IQL+GFF++++ ++G Y++L F +Y L FFANFGPN
Sbjct: 354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG---FLAIYVLAQFFANFGPN 410
Query: 422 STTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-------IQHA 474
+TTF++P E+FPTR RST H +SAA+GKAGA+IG F D K + H
Sbjct: 411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470
Query: 475 VLVLAFTNMLGFCCTFLVTETKGRSLEEISGE 506
+ + A LG T L+ ETKG+SLEE+SGE
Sbjct: 471 LEIFALFMFLGILFTLLIPETKGKSLEELSGE 502
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This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 9e-48
Identities = 123/488 (25%), Positives = 190/488 (38%), Gaps = 53/488 (10%)
Query: 26 VIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLT 85
++A +G F YD I L+ + A T ++ ++ + VG L
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRF-GALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 86 GQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145
G LF G LGD+ GRKK I +L VI A+ G + G S L R +G G+GG
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKS----FYMLIVGRVIVGLGVGG 117
Query: 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDE 205
L +SE A KK RGA + GI+ A ++ + L+K
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYS------------- 164
Query: 206 IFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAI----IEGNAKQAASDMGR 261
WRI L L +PA+ + +PE+ R+ + E A A
Sbjct: 165 -------NSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS 217
Query: 262 VLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKD 321
+D EI EE D L + V E F+ + + +L I Q LT
Sbjct: 218 DVDQEIQEEKDSLE--RSVEAEKASWLELFRGKT--VRQRLLMGVMLQI---FQQLT--G 268
Query: 322 IFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFF 381
I + L + + + VV + TF +FL+++ GR + L+G
Sbjct: 269 INAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIA----IFLVDRFGRRPLLLLGAA 324
Query: 382 MMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF--GPNSTTFVLPAELFPTRVRST 439
M++ L++G+ + + + F A F G +V+ +ELFP VR
Sbjct: 325 GMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPK 384
Query: 440 CHALSAAAGKAGAMIGAFVVQSYTLDEDSK---KIQHAVLVLAFTNMLGFCCTFLVTETK 496
A++ AA + F+ + + A L++ F F V ETK
Sbjct: 385 AMAIATAANWLANFLIGFLFP--IITGAIGGYVFLVFAGLLVLFI----LFVFFFVPETK 438
Query: 497 GRSLEEIS 504
GR+LEEI
Sbjct: 439 GRTLEEID 446
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 120/503 (23%), Positives = 187/503 (37%), Gaps = 59/503 (11%)
Query: 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVI 76
T W +IA +G YD I L + + AN L V+
Sbjct: 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL----WGLVV 77
Query: 77 GVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFR 136
+ LVG G LF GWL D+ GRKK I +L VI AI GL+ + + + L R
Sbjct: 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM---LIVGR 134
Query: 137 FWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV-SMILSKIFLQL 195
LG G+G L +SE A K RGA + GI+ A S +S
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194
Query: 196 FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKM---PETGRYTAIIEGNA 252
+ P Q + +L LG + W + E + A + G +
Sbjct: 195 WRIP-------LGLQ----LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243
Query: 253 KQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLL---- 308
+ + + I+I +K S +R +R +G + WF
Sbjct: 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRR---LFLGVVLQWFQQFTGI 300
Query: 309 -DIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLI 367
I +YS IF G+ + F S + V TF +FL+
Sbjct: 301 NAIMYYSPT-----IFENAGV--------STDHAFLVSIIVGAVNFAFTFVA----IFLV 343
Query: 368 EKIGRFIIQLVGFFMMSLFMLIIGI-KYDYLKNDNKWL----FATLYGLTFFFANFGPNS 422
++ GR + L+G M++ + ++GI ++ +K + FFA G
Sbjct: 344 DRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA-MGWGP 402
Query: 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVL-AFT 481
+V+ +E+FP +R +++ AA + F+V V +
Sbjct: 403 VPWVIVSEIFPLSLRPKGISIAVAA----NWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458
Query: 482 NMLGF-CCTFLVTETKGRSLEEI 503
N+LG F + ETKGR+LEEI
Sbjct: 459 NVLGLIFVYFFLPETKGRTLEEI 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 96/465 (20%), Positives = 166/465 (35%), Gaps = 85/465 (18%)
Query: 8 VLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKL 67
V N + Y AI+++ + D YDL + + + + DP
Sbjct: 2 VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ-------- 53
Query: 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARS 127
F+ L+G G LFFG L D++GR++V +++L + + L+
Sbjct: 54 ----LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN----- 104
Query: 128 VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187
+ L RF G G+GG P ++SEYA K+ RG + +F +G G ++
Sbjct: 105 -VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGAL-PALTTYYWRMKMPETGRYTA 246
L P F WR + +G + P L +PE+ +
Sbjct: 164 L---------IPVFG--------------WRSLFYVGGIAPLLLLLLLMRFLPESIDFL- 199
Query: 247 IIEGNAKQAASDMGRVLD---IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMS 303
+ + + + E + + + + FQ G T+
Sbjct: 200 -VSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF--KALFQ--GKTARITVL 254
Query: 304 TW---FLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREV-FETSRAMFVVALL--GTF 357
W F+L + Y L + P++ + E+ F S A AL G
Sbjct: 255 LWLLYFMLLVGVY-------------FLTNWLPKL--MVELGFSLSLAATGGALFNFGGV 299
Query: 358 PGYWFTVFLIEKIGRFIIQLVGFFMMSLFML---IIGIKYDYLKNDNKWLFATLYGLTFF 414
G +L +++G + L +L + L + L L + F
Sbjct: 300 IGSIIFGWLADRLGPRV-------TALLLLLGAVFAVLVGSTLFSPT--LLLLLGAIAGF 350
Query: 415 FANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVV 459
F N G S + L A +PT +R+T + G+ GA+IG +
Sbjct: 351 FVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 9e-19
Identities = 86/432 (19%), Positives = 154/432 (35%), Gaps = 75/432 (17%)
Query: 81 VGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140
VG L G FG+L D+ GRKKV ++ ++ + + + S FR +G
Sbjct: 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------PNYTVFLVFRLLVG 191
Query: 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG-IIFAGLVSMILSKIFLQLFPAP 199
GIGG + + + +E+ KK R + +G ++ + I
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---------- 241
Query: 200 AFEDDEIFSTQPEGDYLWRIVLMLGALPALTT--YYWRMKMPETGRYTAIIEGNAKQAAS 257
WR + + +LP W + PE+ R+ I +G ++A
Sbjct: 242 -----------------WRWLQLAVSLPTFLFFLLSWFV--PESPRWL-ISQGRIEEALK 281
Query: 258 DMGRVLDIE---IDEEHDKLSQFKEVN---KYPLLSREFFQRHGLHL-IGTMSTWFLLDI 310
+ R+ I + E LS K+++ K F + + M WF
Sbjct: 282 ILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341
Query: 311 AFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI 370
++Y L +G + ++ ++ L P T+ LI+++
Sbjct: 342 SYYGLVL-------DLGNLGGNIYLD------------LFISGLVELPAKLITLLLIDRL 382
Query: 371 GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAE 430
GR + + +L++ + D +L L L F ++ AE
Sbjct: 383 GRRYTMAASLLLAGVALLLLLF----VPVDLYFLRTALAVLGKFGIT-SAFQMVYLYTAE 437
Query: 431 LFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490
L+PT VR+ + + + G++I F+V + L L L T
Sbjct: 438 LYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLAL-----LAGILTL 492
Query: 491 LVTETKGRSLEE 502
+ ETKG L E
Sbjct: 493 FLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 90/402 (22%), Positives = 142/402 (35%), Gaps = 91/402 (22%)
Query: 75 VIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL--SFGSSARSVIGT- 131
+ G + FG GD++GRKK ITL++M I + GL S+ + IG
Sbjct: 40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYAT-----IGIW 94
Query: 132 ----LCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187
L R GF +GG++ +A ++EYA RG + + VG++ A L ++
Sbjct: 95 APILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154
Query: 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAI 247
LS + DD + + WRI ++ A+ L Y R + ET +
Sbjct: 155 LSYL---------LGDDALLE------WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKA 199
Query: 248 IEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFL 307
E + K+ E + F GL +I T +T++L
Sbjct: 200 QEKHKKKRGP-------------------IAETLTKH--RKPFLLGLGL-VIATTTTFYL 237
Query: 308 LDIAFYSQN-LTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVF- 365
I Y LTQ A + A+ V+ L +
Sbjct: 238 --ITTYLPTYLTQTLGLSA-------------------NSALLVLMLSLILFFITIPLSG 276
Query: 366 -LIEKIGR-----FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLY--GLTFFFAN 417
L ++IGR L + L M ++ + + LF L
Sbjct: 277 ALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-------SGSFTLFFFLVLGMALIGGMY 329
Query: 418 FGPNSTTFVLPAELFPTRVRSTCHALS-AAAGKAGAMIGAFV 458
GP + ELFPT VR T +L+ AG ++
Sbjct: 330 TGPMGSFL---PELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTL 84
+++ +GFF D +S LL + ++ +G
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA------------GLIVSAFSLGYA 48
Query: 85 TGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIG 144
G L G+L D+ GR++V + L+L + ++ + S + L RF LG G G
Sbjct: 49 LGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA------SSLWLLLVGRFLLGLGGG 102
Query: 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192
YP +A +++E+ K RG + A G+G + L+ +L++
Sbjct: 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 39/237 (16%)
Query: 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFV 75
A A +G+ DA+D F ++ V + + L T +
Sbjct: 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG------------LTTVDAASL 52
Query: 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFF 135
I AL+ G L FG GD+ GR+ +++L + G + G T+
Sbjct: 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI------TMFIA 106
Query: 136 RFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL 195
R +G G+GG+Y SA + E K R + + VG + A V ++ ++
Sbjct: 107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW--- 163
Query: 196 FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNA 252
WR + + LP + + R +PE + G A
Sbjct: 164 ------------------GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA 202
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 122/514 (23%), Positives = 194/514 (37%), Gaps = 100/514 (19%)
Query: 39 LFCISTVSKLLGRLYYYDPA--------------NPKHNPGKLPTPINNFVIGVALVGTL 84
+F I+ V+ L G L+ YD A P++ + F + AL+G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 85 TGQLFFGWLGDKLGRKKVYGITLILMVICAICSG------LSFGSSARSVIGTLCFFRFW 138
G G+ ++ GR+ I +L I A+ S S G + +R
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 139 LGFGIGGDYPLSATIMSEYANKKTRGAFIA-AVFAMQGVGIIFAGLVSMILSKIFLQLFP 197
G G+G LS ++E A RG ++ FA IIF LV F+ F
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA-----IIFGQLVVY-----FVNYFI 179
Query: 198 APAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAAS 257
A + D +T WR + A+PAL +PET RY G +QA
Sbjct: 180 ARS-GDASWLNT-----DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSR-GKQEQAEG 232
Query: 258 D----MGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFL----LD 309
MG L + +E LL G+ +IG M + F ++
Sbjct: 233 ILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGV----GVIVIGVMLSVFQQFVGIN 288
Query: 310 IAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTV---FL 366
+ Y +IF +G T A+ ++G FTV
Sbjct: 289 VVLY----YAPEIFKTLGA--------------STDIALLQTIIVGVI-NLTFTVLAIMT 329
Query: 367 IEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426
++K GR +Q++G M++ M +G + L + L+ + F ++GP +V
Sbjct: 330 VDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGP--VCWV 387
Query: 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT---LDEDSKKIQHAVLVLAFTNM 483
L +E+FP +R A++ AA I + V S+T +D++S + H F N
Sbjct: 388 LLSEIFPNAIRGKALAIAVAA----QWIANYFV-SWTFPMMDKNSWLVAH------FHNG 436
Query: 484 L-----GFCCTF-------LVTETKGRSLEEISG 505
G V ETKG++LEE+
Sbjct: 437 FSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 73 NFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTL 132
++ +G Q G L D+ GR++V I L+L + + + + L
Sbjct: 35 GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASS------LWLL 88
Query: 133 CFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192
R G G G +P +A +++++ + RG + + A G+G L+ +L+ +F
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
|
Length = 346 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 73/256 (28%), Positives = 105/256 (41%), Gaps = 55/256 (21%)
Query: 2 SNNKLAVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPK 61
+ + L + DT R W AIV A G + +D + S S LY+ P
Sbjct: 5 TVTADSKLTSSDTRRRIW----AIVGASSGNLVEWFDFYVYSFCS-----LYFAHIFFPS 55
Query: 62 HNPGK--LPTPINNFVIGVALVGTLT---GQLFFGWLGDKLGRKKVYGITLILMVICAIC 116
N L T GV G L G FG + DK GRKK +L+ +C +C
Sbjct: 56 GNTTTQLLQTA------GVFAAGFLMRPIGGWLFGRIADKHGRKKS-----MLISVCMMC 104
Query: 117 SGLSFGS------SARSVIGT-----LCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGA 165
FGS IGT L R + G +GG+Y SAT MSE A + +G
Sbjct: 105 ----FGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160
Query: 166 FIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225
+ + + G + A LV ++L + ED E+ ++ WRI LGA
Sbjct: 161 YASFQYVTLIGGQLLALLVVVVLQQT---------LEDAEL------REWGWRIPFALGA 205
Query: 226 LPALTTYYWRMKMPET 241
+ A+ + R ++ ET
Sbjct: 206 VLAVVALWLRRQLDET 221
|
Length = 432 |
| >gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 86 GQLFFGWLGDKLGRKKVYGITLILMVICAICSGL--SFGSSARSVIGT-----LCFFRFW 138
G LFFG LGDK GR+K+ IT+++M I C GL S+ + IG L +
Sbjct: 73 GGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT-----IGIWAPILLLLCKMA 127
Query: 139 LGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG--IIFAGLVSMILSKIFLQLF 196
GF +GG+Y ++ ++EY+ + RG F+ + + ++ AG+V +I + + F
Sbjct: 128 QGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANF 186
Query: 197 PAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPET 241
D+ WRI + + Y R + ET
Sbjct: 187 L----------------DWGWRIPFFIALPLGIIGLYLRHALEET 215
|
Length = 490 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFV 75
R QW + G+ D ++F + V + D P G L
Sbjct: 163 RFQW---ALFFVLGLALMADGVEVFVVGFVLPSAEK----DLCIPDSGKGMLGL------ 209
Query: 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFF 135
+ +G + G F+G L DKLGRK+ L++ ++ +F SS G F
Sbjct: 210 --IVYLGMMVGAFFWGGLADKLGRKQC------LLICLSVNGFFAFFSSFVQGYGFFLFC 261
Query: 136 RFWLGFGIGGDYPLSATIMSEYANKKTRGAFIA--AVFAMQGVGIIFAGLVSMILSKIFL 193
R GFGIGG P+ + +E+ ++ RG ++ +F M G GI A + I+
Sbjct: 262 RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG-GIYAAAMAWAIIPHYGW 320
Query: 194 QLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244
A++ F + WR+ +++ A P + MPE+ R+
Sbjct: 321 SFQMGSAYQ----FHS-------WRVFVIVCAFPCVFAIGALTFMPESPRF 360
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 86 GQLFFGWLGDKLGRKKVYGITLILMVICAICSGL--SFGSSARSVIGTLCFFRFWLGFGI 143
G + FG GD+LGRK++ +T+ +M I GL SF + L R GF +
Sbjct: 80 GGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV 139
Query: 144 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA-GLVSMILSKIFLQLFPAPAFE 202
GG++ +A + E A K + + + V GVG++ + GLVS+I
Sbjct: 140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISM----------MTT 189
Query: 203 DDEIFSTQPEGDYLWRIVLMLGAL 226
D++ S +L+ IVL+L AL
Sbjct: 190 DEQFLSWGWRIPFLFSIVLVLIAL 213
|
Length = 438 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 74 FVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLC 133
++G+A + G+L G L D+LGR++ + L+L+++ A+ L + + +
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300
Query: 134 FFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG 182
LGFG G +P ++S+ A K+ RG +G
Sbjct: 301 LL---LGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 32/190 (16%)
Query: 75 VIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCF 134
++G L G L G L D++GRK++ L+V A+ S ++ +L
Sbjct: 55 AFSAGILGLLPGALLGGRLADRIGRKRI------LIVSVALFGLFSLATAQAWDFPSLLV 108
Query: 135 FRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQ 194
R G G+GG P + SE + RG ++ ++ G+ F G ++ ++
Sbjct: 109 ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYC----GVPFGGALASVIG----- 159
Query: 195 LFPAPAFEDDEIFSTQPEGDYLWRIVLMLGAL-PALTTYYWRMKMPETGRYTAIIEGNAK 253
+ + WR + +G + P L +PE+ + A
Sbjct: 160 -----------VLAAGDAA---WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ--AAGAG 203
Query: 254 QAASDMGRVL 263
+ + + R L
Sbjct: 204 KQRAPVLRAL 213
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 74 FVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLC 133
++ + +G + G L G L D+LGR+++ + LI +++ A+ L + + +++
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRL--LLLIGLLLAALGLLLLALAPSLALLLVAL 272
Query: 134 FFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192
LGFG+G +P T+ SE A + RG +G L++ +L
Sbjct: 273 LL---LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 11/146 (7%)
Query: 348 MFVVALLGTFPGYWFTVFLIEKIGR-FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFA 406
+ + LG G L +++GR ++ L+G + +L +L++ + + L
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL------APSLALLL 269
Query: 407 TLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE 466
L F L +EL P R T L G G +G +
Sbjct: 270 VALLL-LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL--- 325
Query: 467 DSKKIQHAVLVLAFTNMLGFCCTFLV 492
D+ L+LA +L L+
Sbjct: 326 DTGGYGGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 74 FVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLC 133
F+ A +G G FG L DK GRK + + +V ++ +GLS G ++ ++ TL
Sbjct: 57 FLATAAFIGRPFGGALFGLLADKFGRKP---LMMWSIVAYSVGTGLS-GLASGVIMLTLS 112
Query: 134 FFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193
RF +G G+ G+Y ++T E K + A + + G+G I A
Sbjct: 113 --RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF--------- 161
Query: 194 QLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPET 241
P+F + Y WR +G LP L Y R + PE+
Sbjct: 162 ----MPSFAE----------AYGWRAAFFVGLLPVLLVIYIRARAPES 195
|
Length = 426 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 48/227 (21%)
Query: 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFV 75
R QW A A +G+ D +D I+ V + + +
Sbjct: 16 RAQW---KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAAS------------L 60
Query: 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFF 135
I A + G L G +GD+ GR+ I+++L + + G + G TL
Sbjct: 61 ISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW------TLFIA 114
Query: 136 RFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG--VGIIFAGLVSMILSKIFL 193
R +G G+ G+Y SAT + E K R A+ F + G +G + A V ++
Sbjct: 115 RLVIGMGMAGEYGSSATYVIESWPKHLRNK--ASGFLISGFSIGAVVAAQVYSLV----- 167
Query: 194 QLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPE 240
P + WR + +G LP + + R +PE
Sbjct: 168 ----VPVWG--------------WRALFFIGILPIIFALWLRKNLPE 196
|
Length = 496 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 82 GTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGS--SARSVIGTLCFFRFWL 139
G + Q+ G+L K K GI + + S +S +A I + F R
Sbjct: 88 GQIIIQIPVGYLAGKYVFKWSIGIGM------FLSSVISIVIPWAAGGGIALVVFCRVIQ 141
Query: 140 GFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMIL 188
G G P + I+ ++A K R + + +G +S L
Sbjct: 142 GLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 78 VALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRF 137
A GT+ G + +G D++G KK + I L++ + I ++G F
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL-FIFPLFRIPQDNYLLLGACLFGLM 332
Query: 138 WLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189
G+GG P + +Y + RG ++ + F + + L
Sbjct: 333 ATNVGVGGLVP---KFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381
|
Length = 426 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)
Query: 69 TPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSV 128
+ + A++G + WL + G+K+ + L+ M++ AI L F S+
Sbjct: 260 SVLLLIGTIAAILGAP----LWPWLAKRFGKKRTF---LLGMLLAAIGLVLLFFLPPGSL 312
Query: 129 IGTLCFFRFWLGFGIGGDYPLSATIMS---EYANKKTRGAFIAAVFAMQGVGIIFAGLVS 185
G G+G L +++ +Y KT F++ G +
Sbjct: 313 W-LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALG 371
Query: 186 MILSKIFLQL--FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-----YYWRMKM 238
+ + L + A A + Q L I L+ +PA+ +
Sbjct: 372 GAIVGLLLAFAGYVANA-------TAQSAA-ALSGIRLLFTLIPAVLALLALLILRFYPL 423
Query: 239 PE 240
+
Sbjct: 424 TD 425
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.91 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.91 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.83 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.79 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.79 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.77 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.75 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.74 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.72 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.68 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.63 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.57 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.54 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.49 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.42 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.41 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.38 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.36 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.34 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.34 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.31 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.31 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.31 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.31 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.28 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.28 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.28 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.27 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.27 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.27 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.27 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.27 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.26 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.26 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.25 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.25 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.24 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.21 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.2 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.2 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.19 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.19 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.19 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.18 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.18 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.18 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.17 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.17 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.15 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.15 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.14 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.14 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.13 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.12 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.12 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.11 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.11 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.1 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.09 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.08 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.08 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.06 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.06 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.06 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.05 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.04 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.01 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.99 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.98 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.98 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.97 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.96 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.88 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.87 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.84 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.83 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.81 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.79 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.79 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.79 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.76 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.75 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.71 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.7 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.69 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.65 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.61 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.6 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.57 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.57 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.56 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.56 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.53 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.48 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.39 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.38 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.26 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.24 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.22 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.15 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.15 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.13 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.07 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.07 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.92 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.83 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.82 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.77 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.64 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.6 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.31 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.21 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.13 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.11 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.1 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.98 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.94 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.65 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.56 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.54 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.51 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.47 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.14 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.12 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.04 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.76 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.75 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.8 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.25 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 92.6 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.44 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.35 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 91.97 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 87.4 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=370.92 Aligned_cols=486 Identities=51% Similarity=0.878 Sum_probs=337.0
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh
Q 009442 10 NALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLF 89 (534)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~ 89 (534)
+..|+.+..+++++++.++.++.+.+++|...++.+.|.+.+++..+ +.+.+..+.+++.+.+.++..+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ig~~ig~~~ 75 (502)
T TIGR00887 3 EEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHG-------KGPLPSSVSAAVNGSASIGTLAGQLF 75 (502)
T ss_pred chhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788899999999999999999999999999999887753211 12566778899999999999999999
Q ss_pred HhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHH
Q 009442 90 FGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAA 169 (534)
Q Consensus 90 ~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~ 169 (534)
.|+++||+|||+++.++.+++.+++++++++++.....+++.++++|+++|++.|...+....+++|++|+++|++++++
T Consensus 76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~ 155 (502)
T TIGR00887 76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA 155 (502)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence 99999999999999999999999999999875422112368899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhc
Q 009442 170 VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIE 249 (534)
Q Consensus 170 ~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~ 249 (534)
.+....+|.++++.++..+...+....+......++.-......+++||+++.+.+++.++.++..+++||||+|+..++
T Consensus 156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~ 235 (502)
T TIGR00887 156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA 235 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC
Confidence 99999999999999988765432210000000000000000012357999999999998888888889999999963333
Q ss_pred CChHHHHHHHHhhhccccchhhhhhhhh---c---ccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 009442 250 GNAKQAASDMGRVLDIEIDEEHDKLSQF---K---EVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF 323 (534)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (534)
++++++.+.+.+..+.+.+++.++.++. + +.+.+++++.+..++..+..+.....++...+.+|+...+.|.++
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~ 315 (502)
T TIGR00887 236 KDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL 315 (502)
T ss_pred cchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH
Confidence 4334455555544432221111111100 0 112233333322223223334444555566677888888888888
Q ss_pred ccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 009442 324 PAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKW 403 (534)
Q Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (534)
++.|+++...+................+..++.+++.+++++++||+|||++++.+..+.++++.++....... ...
T Consensus 316 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~--~~~- 392 (502)
T TIGR00887 316 SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL--STH- 392 (502)
T ss_pred HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc--chh-
Confidence 87777655332211111111111133445567778889999999999999999888888777776666542210 011
Q ss_pred HHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc-------ccchhHHHH
Q 009442 404 LFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED-------SKKIQHAVL 476 (534)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~ 476 (534)
.......+...+...+..++.+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.+..+ ..++...+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (502)
T TIGR00887 393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472 (502)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence 1122222223333455667788889999999999999999999999999999999998876321 124556788
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccc
Q 009442 477 VLAFTNMLGFCCTFLVTETKGRSLEEISG 505 (534)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (534)
+++++++++.++.+++||+++++.+|+++
T Consensus 473 i~~~~~~~~~i~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 473 IFALFMFLGILFTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHHheEeccCCCCCHHhhhC
Confidence 88888888777666779999998877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=342.26 Aligned_cols=475 Identities=55% Similarity=0.954 Sum_probs=391.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
.|++.+.+.+..++++.++||..+++.+.|.+...+...++. ..++++...+.+..+..+|..+||++.|+++||+
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~----~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDES----GGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCC----CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788899999999999999999999999999998877543321 1468888899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCcc-chHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSAR-SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV 176 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l 176 (534)
|||+++...++++.+++++++++...+.+ .-..++...|++.|+|.|+-+|...+..+|....++||...+.+.+..+.
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 99999999999999999998887665544 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHH
Q 009442 177 GIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 177 G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
|.+.|.+++..+...+...++.+. +...-+.-||..+.++++++++.+...+.+|||++|..+..++.+++.
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~--------~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~ 263 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPS--------TYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA 263 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCC--------CchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh
Confidence 999999999888876654333220 001123459999999999999999999999999999777777777776
Q ss_pred HHHHhhhccccchhhhhhhhh-cccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQF-KEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 335 (534)
++.++....+.+++.+..... ..++...++.....+++.+.++..+..|+...+.+|..++++..++++.|+.+.....
T Consensus 264 ~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 264 GDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred hccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH
Confidence 665555444333332221111 1223334555555555777899999999999999999999999999999998876554
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
+..+..+.....+...+.++|..+..+++|++|||+..+.+++++.+..++++..+.. ..+.....+++.+..++
T Consensus 344 ---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~~~~~Gf~v~y~l~~ff 418 (538)
T KOG0252|consen 344 ---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--LENTIGFVVLYSLTFFF 418 (538)
T ss_pred ---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--ccccCceeehHHHHHHH
Confidence 4455566667777888889999999999999999999999999999998888876542 12455567788888888
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccc--cccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE--DSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
.++++......+.+|.+|++.|+++.|+...++.+|++++...+..+.+.. ...+.+.++++++.+++++.+..+++|
T Consensus 419 ~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 419 GNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred HhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 999999999999999999999999999999999999999999998887622 234788899999999999999999999
Q ss_pred cCCCCCcccccccCCC
Q 009442 494 ETKGRSLEEISGEDGG 509 (534)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (534)
|+++++.+|++.+.+.
T Consensus 499 Etk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 499 ETKGKSLEEISNEEES 514 (538)
T ss_pred cccccCHHHhcChhhc
Confidence 9999999988655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=359.12 Aligned_cols=447 Identities=19% Similarity=0.282 Sum_probs=333.4
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhH
Q 009442 9 LNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQL 88 (534)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~ 88 (534)
++..++.+.++++|.++++++++.+..+++...++.++|.+.+++ +++..+.+++.+++++|.+++++
T Consensus 153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~------------gls~~~~g~l~s~~~lG~iiG~l 220 (742)
T TIGR01299 153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDL------------CIPDSGKGMLGLIVYLGMMVGAF 220 (742)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 334556667888999999999999999999999999999999988 89999999999999999999999
Q ss_pred hHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHH
Q 009442 89 FFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIA 168 (534)
Q Consensus 89 ~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~ 168 (534)
++|+++||+|||+++++++++.+++.++++++ ++++.++++|++.|++.|+..++..+++.|++|+++|++.++
T Consensus 221 i~G~LsDR~GRR~~lii~lil~~i~~ll~afa------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g 294 (742)
T TIGR01299 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSSFV------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS 294 (742)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999999999999999999998 559999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhh
Q 009442 169 AVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAII 248 (534)
Q Consensus 169 ~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~ 248 (534)
++.++..+|.++++.++..+...++..... .......+||+.+++.+++.++.+++.+++||||+|+ ..
T Consensus 295 ~~~~~~~iG~ila~~la~~il~~~G~~~~~----------g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~ 363 (742)
T TIGR01299 295 WLCMFWMIGGIYAAAMAWAIIPHYGWSFQM----------GSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF-LE 363 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhcc----------ccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HH
Confidence 999999999999999988776432210000 0011235799999999998888888888999999996 45
Q ss_pred cCChHHHHHHHHhhhccccch---hhh--------h---hh---hhc-cc--------------------CcccchhHHH
Q 009442 249 EGNAKQAASDMGRVLDIEIDE---EHD--------K---LS---QFK-EV--------------------NKYPLLSREF 290 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~---~~~--------~---~~---~~~-~~--------------------~~~~~~~~~~ 290 (534)
+++.+++.+.++++.+.+... ..+ . .+ +.+ +. ...+++++
T Consensus 364 ~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-- 441 (742)
T TIGR01299 364 NGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-- 441 (742)
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc--
Confidence 556666666666655433210 000 0 00 000 00 01112222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc---c-------------------ccccc-------c------cc
Q 009442 291 FQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAM---G-------------------LVHKA-------P------QV 335 (534)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-------------------~~~~~-------~------~~ 335 (534)
+..+..+.+++.|++..+.+|+...|.|.++... . ++... . +.
T Consensus 442 --~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (742)
T TIGR01299 442 --EVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGL 519 (742)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcc
Confidence 2234467788889999999999999999765431 0 00000 0 00
Q ss_pred ----------------------c---------------------------------------hhh-------hHhhhhHH
Q 009442 336 ----------------------N---------------------------------------ALR-------EVFETSRA 347 (534)
Q Consensus 336 ----------------------~---------------------------------------~~~-------~~~~~~~~ 347 (534)
. .+. ........
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 599 (742)
T TIGR01299 520 KFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYF 599 (742)
T ss_pred cccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHH
Confidence 0 000 00011233
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
...+..++.+++.+++++++||+|||+++.++.++.+++.+++.+.. +....+++..+. .++..+..+..+++
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------s~~~ll~~~~l~-g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------SESAMIALLCLF-GGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999988888877776542 222222222222 22233345667788
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKGRS 499 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (534)
++|++|++.|++++|+.+..+++|++++|++.+.+.+. +...+|++++++.++++++.+++|||+++.
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 99999999999999999999999999999999887652 456688888888888888888889998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=334.70 Aligned_cols=453 Identities=20% Similarity=0.269 Sum_probs=342.8
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCC--CCCCCchhHHHHHHHHHHHHHHHhHhHhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHN--PGKLPTPINNFVIGVALVGTLTGQLFFGWL 93 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l 93 (534)
+..++.......+.++.+-.||....+++..+.+.+..+....+++.. +.+.-....+.+.+++.+|.++|++..|++
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667778889999888888776654432111111110 001223356788899999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHH
Q 009442 94 GDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 173 (534)
Q Consensus 94 ~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 173 (534)
+||+|||..+.++.++..++.+++.++... +++.+++++|++.|+.+|......+.|+.|..|++.||......+.+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~---~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~ 160 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSA---PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIG 160 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHH
Confidence 999999999999999999999988887443 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChH
Q 009442 174 QGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAK 253 (534)
Q Consensus 174 ~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~ 253 (534)
..+|.+++..++..-. ......|++.+.+..+++++.++...++||||+|+...+++++
T Consensus 161 ~~~g~ll~~~~~l~~i---------------------lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~ 219 (485)
T KOG0569|consen 161 VVIGILLGQVLGLPSL---------------------LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE 219 (485)
T ss_pred HHHHHHHHHHHccHHh---------------------cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH
Confidence 9999999987775433 2245569999999999999999999999999999855577788
Q ss_pred HHHHHHHhhhccccchhhhh-----hhhh-----cccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 009442 254 QAASDMGRVLDIEIDEEHDK-----LSQF-----KEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF 323 (534)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (534)
++.+.++..++.+.++++.+ .++. ++.+.+++++++..|+.. .+.+.+.........+....|...++
T Consensus 220 ~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~--~i~~~v~~~qq~sGi~ai~~Yst~i~ 297 (485)
T KOG0569|consen 220 EARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL--LIGIVVSFAQQFSGINAIFFYSTSIF 297 (485)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH--HHHHHHHHHHHhcCcceeHHHHHHHH
Confidence 88888888877654322211 1111 122345566666555542 23333333444445556666777778
Q ss_pred ccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 009442 324 PAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKW 403 (534)
Q Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (534)
.+.|+++..+.. .....++..++.++++.+++||.|||++++.+..++.++.+++............|
T Consensus 298 ~~aG~~~~~a~~------------an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (485)
T KOG0569|consen 298 KTAGFTPEEAQY------------ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW 365 (485)
T ss_pred HHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 888887776554 67778888999999999999999999999999999998888777654422211111
Q ss_pred ---HHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHH
Q 009442 404 ---LFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAF 480 (534)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (534)
..+.........+..|.+|+.|.+.+|++|++.|+.+.++....+++..++....++.+.+..+ - ..|+++.+
T Consensus 366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i 441 (485)
T KOG0569|consen 366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVI 441 (485)
T ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHH
Confidence 2234444555566788999999999999999999999999999999999999999999988433 2 67778888
Q ss_pred HHHHHHHHHH-hhccCCCCCcccccccCCCC
Q 009442 481 TNMLGFCCTF-LVTETKGRSLEEISGEDGGV 510 (534)
Q Consensus 481 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 510 (534)
.+++..+..+ ++||||+|+..|+.++.++.
T Consensus 442 ~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 442 PLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 8777777766 67999999999888776654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=329.30 Aligned_cols=456 Identities=18% Similarity=0.231 Sum_probs=307.6
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
..+++++.+.++.++.+..++|...+++..|.+.+++.. +...+.+.+..+.+++.+++.++..++++++|+++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr 81 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA----PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR 81 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcc----cccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888899999999999999999999888742 2334458899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccC------CCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHH
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFG------SSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAV 170 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~------~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~ 170 (534)
+|||++++.+.++++++.+.++++.. ....+++..++++|+++|++.|...+...++++|++|+++|++++++.
T Consensus 82 ~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~ 161 (479)
T PRK10077 82 FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN 161 (479)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHH
Confidence 99999999999999999888876310 001133577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcC
Q 009442 171 FAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEG 250 (534)
Q Consensus 171 ~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~ 250 (534)
+.+..+|.++++.++..+...... ...+..+||++|++.+++.++..+..+++||+|+++ ..++
T Consensus 162 ~~~~~~G~~~~~~~~~~~~~~~~~---------------~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l-~~~~ 225 (479)
T PRK10077 162 QFAIIFGQLVVYFVNYFIARSGDA---------------SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL-MSRG 225 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcc---------------cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHcC
Confidence 999999999998887766521100 011356899999998887777666677899999885 2333
Q ss_pred ChHHHHHHHHhhhccccchh-hhhhhhhcccCcccchhHHHhhhhhhH-HHHHHHHHHHHHHHHHHhhhhhhcccccccc
Q 009442 251 NAKQAASDMGRVLDIEIDEE-HDKLSQFKEVNKYPLLSREFFQRHGLH-LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGL 328 (534)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 328 (534)
+.+++.+..++..+.+..++ .++.++..+..... ..+........ ........+.....++....+.|.+..+.|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~ 303 (479)
T PRK10077 226 KQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKT--GGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303 (479)
T ss_pred CHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhh--hhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC
Confidence 33443333333222111110 01110000000000 00000000000 0111111111122233344555666666555
Q ss_pred cccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 009442 329 VHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATL 408 (534)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (534)
+...... ......+..+++.+++++++||+|||++++.+..+..++.+.+....... .........
T Consensus 304 ~~~~~~~------------~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--~~~~~~~~~ 369 (479)
T PRK10077 304 STDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--APGIVALLS 369 (479)
T ss_pred CCchHHH------------HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--cccHHHHHH
Confidence 4432221 44556677888899999999999999999999998888877776543211 111222222
Q ss_pred HHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc---cccccchhHHHHHHHHHHHHH
Q 009442 409 YGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL---DEDSKKIQHAVLVLAFTNMLG 485 (534)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 485 (534)
..+..........+..+.++.|.+|++.|+++.|+.+..++++.++++.+.+.+.+ ..+..++...|.+.+++++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 22222222333456778899999999999999999999999999999887775541 111346667788878777777
Q ss_pred HHHHH-hhccCCCCCcccccccCC
Q 009442 486 FCCTF-LVTETKGRSLEEISGEDG 508 (534)
Q Consensus 486 ~~~~~-~~~~~~~~~~~~~~~~~~ 508 (534)
+++.+ +.||+|+++.+|.++..+
T Consensus 450 ~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 450 ALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHHHHhccccCCCCCHHHHHHHHh
Confidence 76665 468999888877665543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=320.10 Aligned_cols=412 Identities=18% Similarity=0.244 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHH--HHHHHHHHHHHHhHhHhhhhhccch
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNF--VIGVALVGTLTGQLFFGWLGDKLGR 99 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~--~~s~~~lg~~i~~~~~g~l~dr~Gr 99 (534)
++++..++++.+++++|...++...|.+.++++.+.+ .. ....+. +.++.++++.+|+++.|+++||+||
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~-------~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr 86 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGAD-------PS-VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGR 86 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-------cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567778899999999999999999999998843221 10 111222 2578889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccchHH--------HHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHH
Q 009442 100 KKVYGITLILMVICAICSGLSFGSSARSVIG--------TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF 171 (534)
Q Consensus 100 r~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~ 171 (534)
|+++.++++++++++++++++++ +. .++++|+++|++.|+.++...+++.|++|+++||++.++..
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~~------~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~ 160 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIPS------YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLD 160 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 99999999999999999999955 55 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCC
Q 009442 172 AMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGN 251 (534)
Q Consensus 172 ~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~ 251 (534)
.+..+|..+++.+...+.....+. ...++|||++|++++++.++.+++...+||+|+|.. .++
T Consensus 161 ~~~~~G~~lg~~~~~~~~~~~~~~---------------~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~--~~~ 223 (490)
T PRK10642 161 FGSIAGFVLGAGVVVLISTIVGEA---------------NFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQ--HVD 223 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH---------------HhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHH--HHH
Confidence 888899988887776655322110 113578999999987777766666678899998731 111
Q ss_pred hHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccc
Q 009442 252 AKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVH 330 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 330 (534)
+.++.+ +.. .++.++.+..+++++ ..+.........+.....+|....+.|.++++ .|++.
T Consensus 224 ~~~~~~------~~~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~ 285 (490)
T PRK10642 224 KLEQGD------REG-------LQDGPKVSFKEIATK-----HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSE 285 (490)
T ss_pred hhhhhc------ccc-------ccccccCCHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 100000 000 000000111122221 11122222233344456677777788887743 35443
Q ss_pred cccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 009442 331 KAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYG 410 (534)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (534)
.. +........++.+++.++.|+++||+|||+.+..+.++..++...+..... .+....+.+..
T Consensus 286 ~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 349 (490)
T PRK10642 286 DH------------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN----SNVIGLIFAGL 349 (490)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 22 112455566778888999999999999999887776544333222111111 11121111111
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
+..++......+....+..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ ++..++.+..+.++++.+..+
T Consensus 350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~--~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ--NLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHH
Confidence 111111111122344566799999999999998777777888899999988876322 345555555666666666666
Q ss_pred hhccCCCCCc
Q 009442 491 LVTETKGRSL 500 (534)
Q Consensus 491 ~~~~~~~~~~ 500 (534)
++||++++..
T Consensus 428 ~~pes~~~~~ 437 (490)
T PRK10642 428 TMKETANRPL 437 (490)
T ss_pred HhccccCCCC
Confidence 7798876544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=291.60 Aligned_cols=407 Identities=13% Similarity=0.145 Sum_probs=312.6
Q ss_pred hcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhh
Q 009442 14 TARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWL 93 (534)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l 93 (534)
+...+++|++++....+++...++.+-.++.+.|.+.++. ++|.+|.|++.+++++.+.++.++.|.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~------------~lsk~~lG~i~s~f~i~YG~sKf~~G~~ 87 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG------------GLSKTQLGILGSAFSITYGVSKFVMGVL 87 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566788899999999999999999999999999999987 8999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHH
Q 009442 94 GDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 173 (534)
Q Consensus 94 ~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 173 (534)
+||.++|..+..++++.++.+++++++ +|.+.+.+.-++.|+.+|..+|.+...+..|+|++|||+..++++.+
T Consensus 88 sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s 161 (448)
T COG2271 88 SDRSNPRYFMAFGLILSAIVNILFGFS------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS 161 (448)
T ss_pred cccCCCceeehHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence 999999999999999999999999999 66999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcC
Q 009442 174 QGVGIIFAGLVS--MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEG 250 (534)
Q Consensus 174 ~~lG~~i~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~ 250 (534)
.++|..+.+++. +++. .+.+||..|++.++.+++ .++.++..+|+|+...+.+
T Consensus 162 hNiGGal~~~~~~la~~~-----------------------~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~- 217 (448)
T COG2271 162 HNIGGALAPLVALLAFFA-----------------------FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP- 217 (448)
T ss_pred hhcccchHHHHHHHHHHH-----------------------hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-
Confidence 999999999998 5555 345799999997777665 5666677888887422111
Q ss_pred ChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc-ccc
Q 009442 251 NAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAM-GLV 329 (534)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 329 (534)
.+| .+++..+.+ ++.++.+.-+.++.+.+..++++ .+|.+++..++.-+.-|++..|.|.|+.+. +++
T Consensus 218 -ie~-------~~~d~~e~~-~~~~~~~~ls~~~i~~~YVL~Nk--~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s 286 (448)
T COG2271 218 -IEE-------YRGDPLEIY-EEEKENEGLTAWQIFVKYVLKNK--LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFS 286 (448)
T ss_pred -HHH-------hhcCchhhh-hhhccCCCccHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCC
Confidence 111 111111111 11111111233445555555443 467777777888888899999999988763 444
Q ss_pred ccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q 009442 330 HKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI--GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFAT 407 (534)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (534)
...+.. .....-+++++|++++||++||+ |||....+.+.+.....++..+... +.+.....
T Consensus 287 ~~~a~~------------a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~----~~~~~l~~ 350 (448)
T COG2271 287 LVKANW------------AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP----NGSYLLDA 350 (448)
T ss_pred HHHHHH------------HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC----CccHHHHH
Confidence 443322 67777899999999999999996 6666554444333333332222211 23344444
Q ss_pred HHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 408 LYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
+.....++...++.-+.-..+.|..|++..|++.|+...++++ |+..+....+.+.|. .||...|++..+.++++.
T Consensus 351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~---~gW~g~Fi~~~~~a~l~~ 427 (448)
T COG2271 351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT---WGWDGGFIVLSIAALLAI 427 (448)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec---CCCcchHHHHHHHHHHHH
Confidence 4444555555666656666778999999999999999999999 899999999998873 688889988888888887
Q ss_pred HHHHhh
Q 009442 487 CCTFLV 492 (534)
Q Consensus 487 ~~~~~~ 492 (534)
++...+
T Consensus 428 lll~~~ 433 (448)
T COG2271 428 LLLLPV 433 (448)
T ss_pred HHHHHH
Confidence 776644
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=269.40 Aligned_cols=432 Identities=20% Similarity=0.368 Sum_probs=329.0
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhH
Q 009442 9 LNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQL 88 (534)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~ 88 (534)
.++++..+..+++|........+........-..+.+.|...+.+ +.+..+..++......|..+++.
T Consensus 64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w------------~~s~~q~~llt~~v~~gmllga~ 131 (528)
T KOG0253|consen 64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVW------------GPSEGQAPLLTLSVFLGMLVGAM 131 (528)
T ss_pred hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------------chhhhhhhHHHHHHHhhhhhhhh
Confidence 345556678899999999999999888888888888888888876 89999999999999999999999
Q ss_pred hHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHH
Q 009442 89 FFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIA 168 (534)
Q Consensus 89 ~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~ 168 (534)
.+|.++|++|||+.+.+..+..++...+.+.+++ +..+++.|.+.|+|.|+ .|...++-.|..|..+|+..+-
T Consensus 132 ~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V 204 (528)
T KOG0253|consen 132 VWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTV 204 (528)
T ss_pred hhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchh
Confidence 9999999999999999999999999999999966 99999999999999999 8999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhh
Q 009442 169 AVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAII 248 (534)
Q Consensus 169 ~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~ 248 (534)
.. +.+.+|.++...++.... .+.||||......++..+.....+++||||||. ..
T Consensus 205 ~~-~~waig~v~ea~law~vm-----------------------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~ 259 (528)
T KOG0253|consen 205 MS-FFWAIGQVFEALLAWGVM-----------------------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY-LA 259 (528)
T ss_pred HH-HHHHHHHHHHHHHHHHHH-----------------------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh-hh
Confidence 66 899999999999999888 456799999998888888888889999999996 56
Q ss_pred cCChHHHHHHHHhhhccccc----------------hhhhhhhhh-------cccCcccchhHHHhhhhhhHHHHHHHHH
Q 009442 249 EGNAKQAASDMGRVLDIEID----------------EEHDKLSQF-------KEVNKYPLLSREFFQRHGLHLIGTMSTW 305 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (534)
++++.++.+.++++.+.+.. +|+...++. .+.+..+++..+.++. .+.....|
T Consensus 260 ~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkt----tlllw~iw 335 (528)
T KOG0253|consen 260 KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKT----TLLLWRIW 335 (528)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHH----HHHHHHHH
Confidence 66666766666655332210 000001111 1113334555554444 56677888
Q ss_pred HHHHHHHHHhhhhhhccccccc---c----ccccccc-chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 306 FLLDIAFYSQNLTQKDIFPAMG---L----VHKAPQV-NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~g---~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+.+.+.||+.......+++... . .+.+... ..+.........-..+..+..++|.++.++++||+|||+.+.
T Consensus 336 fgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa 415 (528)
T KOG0253|consen 336 FGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA 415 (528)
T ss_pred HhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH
Confidence 8899999998877666654322 1 1111110 001111122233567777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
...++.+++.+.+.... ............-.+.. +.+.+.|+|..|++|+..|+++.|.+..++++|+++.|+
T Consensus 416 l~l~~f~iflfll~~c~------~rn~~tvllf~arafis-g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~ 488 (528)
T KOG0253|consen 416 LSLILFGIFLFLLTTCK------TRNAYTVLLFTARAFIS-GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPV 488 (528)
T ss_pred HHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHh-chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhH
Confidence 99999888877776642 22233333333333333 345688999999999999999999999999999999999
Q ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhc-cCCCCCc
Q 009442 458 VVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT-ETKGRSL 500 (534)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 500 (534)
+. ...+. ....+..+++.+++++.++..++| |||+|+.
T Consensus 489 iA-~~~e~----s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 489 IA-MRAEL----STSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HH-HHhcc----ceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 88 33331 444567788888888888887775 8888764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=310.43 Aligned_cols=436 Identities=24% Similarity=0.344 Sum_probs=297.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
+..+....++.++.+...++...+++..|.+..+++.+.+ .+.+.+..+.+++.+++.++..++++++|+++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g 99 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSA----NSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFG 99 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCc----ccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Confidence 3334444455566678889999999999988887743221 122467899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
||++++++.+++.++.+++.+..+. .+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 100 rr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 100 RKKSLLIIALLFVIGAILMGLAAFA---LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999998765431 3467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHH
Q 009442 179 IFAGLVS---MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQA 255 (534)
Q Consensus 179 ~i~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 255 (534)
++++.++ ... ....+||+.|++.++..++.++..+++||+|++. ..+++.++.
T Consensus 177 ~~~~~~~~~~~~~-----------------------~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 232 (481)
T TIGR00879 177 LVAYGFGSGKVSL-----------------------NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWL-VGKGRVEEA 232 (481)
T ss_pred HHHHHHHHHhhcC-----------------------CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHH-HHcCChHHH
Confidence 9999998 222 1456899999997777777777777899998874 222222322
Q ss_pred HHHHHhhhccccchhh-hh-------hhhhcccCcccchhHHHh--h-hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 009442 256 ASDMGRVLDIEIDEEH-DK-------LSQFKEVNKYPLLSREFF--Q-RHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP 324 (534)
Q Consensus 256 ~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (534)
.+...+..+.+.++.. .+ .++.+.+...+..+.... + ...+.++...+.++...........+.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (481)
T TIGR00879 233 RKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312 (481)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH
Confidence 2222222111111000 00 000000000000000000 0 01112222333333332333334455566666
Q ss_pred cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc----
Q 009442 325 AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND---- 400 (534)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 400 (534)
+.|++..... .......++.+++.++++++.||++||+.+..+.++..++++.+..........
T Consensus 313 ~~g~~~~~~~------------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
T TIGR00879 313 NAGVSTDHAF------------LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380 (481)
T ss_pred HcCCCchHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence 6666553222 256667778888999999999999999999988887777777666332211111
Q ss_pred hhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHH
Q 009442 401 NKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAF 480 (534)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (534)
..+.......+...+...+..+....+..|.+|++.|+++.|+.+...++|++++|.+.+.+.+ ..++...|++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---~~~~~~~f~~~~~ 457 (481)
T TIGR00879 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE---SIGVGGVFIFFGG 457 (481)
T ss_pred hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccceehhHHH
Confidence 1333333333444444555567777788999999999999999999999999999999998876 3477888888888
Q ss_pred HHHHHHHHHH-hhccCCCCCc
Q 009442 481 TNMLGFCCTF-LVTETKGRSL 500 (534)
Q Consensus 481 ~~~~~~~~~~-~~~~~~~~~~ 500 (534)
++++++++.+ +.||+++++.
T Consensus 458 ~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 458 LNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHheecccCCCCCh
Confidence 8888777766 4577766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=299.39 Aligned_cols=401 Identities=11% Similarity=0.109 Sum_probs=276.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
++.+|+.+..++++++.+++|+.+++.+.|.+.+++ +++..+.|++.+++.+++++++++.|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~ 70 (412)
T TIGR02332 3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL------------GLSATMFGLAATLFYAAYVICGIPSNIMLAII 70 (412)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc------------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345788888999999999999999999999999988 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|||+++..+++++++++++++++ +|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+.++|
T Consensus 71 G~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 144 (412)
T TIGR02332 71 GARRWIAGIMVLWGIASTATMFA------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT 144 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
..+++.+++++..... ..+..|||+.|++.+++.++ ..+..+++||+|+.. +.-.+ ++.
T Consensus 145 ~~~~~~~~~~l~~~~~-----------------~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~-~~~ 204 (412)
T TIGR02332 145 MALGLILSGYILALDG-----------------LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDE-EDK 204 (412)
T ss_pred HHHHHHHHHHHHhCCC-----------------CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCH-HHH
Confidence 9999999988762100 01246899999997777655 445556789988531 00001 111
Q ss_pred HHHHhhhc-cccchhhhhhhhhcccCc--ccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc--ccccc
Q 009442 257 SDMGRVLD-IEIDEEHDKLSQFKEVNK--YPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAM--GLVHK 331 (534)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~ 331 (534)
+...+..+ .+.+.+..+ +..++... ...++ ... .+.++.....+++....++....+.|.++++. +.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~ 279 (412)
T TIGR02332 205 KALKEMIDNDQLTLEQPE-GAFAHAAMPQRSMLR-EIF---TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI 279 (412)
T ss_pred HHHHHHHHhccccccccc-cccccccccHHHHHH-Hhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 11111100 000000000 00000000 00111 111 12244455555666667777788888888764 23322
Q ss_pred ccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 009442 332 APQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFII-QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYG 410 (534)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (534)
.. ........++.+++.++.++++||++||+. ......+..+++ .+... . .+.........
T Consensus 280 ~~------------~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-~----~~~~~~~~~~~ 341 (412)
T TIGR02332 280 MI------------GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-T----DHNLIQLLGII 341 (412)
T ss_pred Hh------------HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-c----CCHHHHHHHHH
Confidence 22 225677778899999999999999997664 333333333332 22211 1 11111111111
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHH
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (534)
+ ..++.....+..+....|.+|++.|++++|+.+...++|++++|.+.+.+.+..+ +|...+.+++++.
T Consensus 342 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~~ 410 (412)
T TIGR02332 342 M-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAALL 410 (412)
T ss_pred H-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHHH
Confidence 1 1111222223344555788999999999999999999999999999999988533 5777777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=307.58 Aligned_cols=382 Identities=22% Similarity=0.360 Sum_probs=276.7
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhc
Q 009442 44 TVSKLLGRLYYYDPANPKHNPGKLP---TPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120 (534)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 120 (534)
+..|.+.+|+ +++ ..+.+++.+++.+|..+++++.|+++||+|||++++++.++.+++.++++++
T Consensus 110 ~~~~~i~~e~------------~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~ 177 (505)
T TIGR00898 110 TFSSTIVTEW------------DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS 177 (505)
T ss_pred cccccEEEEe------------cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666 888 8999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009442 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPA 200 (534)
Q Consensus 121 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~ 200 (534)
++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.
T Consensus 178 ------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----------- 240 (505)
T TIGR00898 178 ------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----------- 240 (505)
T ss_pred ------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 459999999999999999999999999999999999999999999999999999998887664
Q ss_pred CCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccc---hhhhhh---
Q 009442 201 FEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEID---EEHDKL--- 274 (534)
Q Consensus 201 ~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 274 (534)
+||+.+++.+++.++..+..+++||+|+|+ ..+++.+++.+.+++..+.+.. ++....
T Consensus 241 ---------------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (505)
T TIGR00898 241 ---------------DWRWLQLAVSLPTFLFFLLSWFVPESPRWL-ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE 304 (505)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh
Confidence 299999998888877777778899999996 3444455555544443322111 110000
Q ss_pred hhh-cc---cCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHH
Q 009442 275 SQF-KE---VNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFV 350 (534)
Q Consensus 275 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (534)
++. ++ ....++++++..+. ..+...+.++.....++....+.+.+ +.+. .....
T Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------~~~~~ 362 (505)
T TIGR00898 305 KDLSSSKKQYSFLDLFRTPNLRK---TTLCLMMLWFTTAFSYYGLVLDLGNL----GGNI---------------YLDLF 362 (505)
T ss_pred hhhhhccCCCcHHHHhCChHHHH---HHHHHHHHHHHHHHHHHHHhcccccc----CCCh---------------HHHHH
Confidence 000 00 12222333322222 23334444555555666555444432 1110 01344
Q ss_pred HHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccc
Q 009442 351 VALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAE 430 (534)
Q Consensus 351 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 430 (534)
...+..+++.++.+++.||+|||+.+.++.++.+++++++..... ...+....+..+.. ++..+..+..+.+..|
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e 437 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV----DLYFLRTALAVLGK-FGITSAFQMVYLYTAE 437 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 556777889999999999999999999998888887776655422 11122222222222 2222234566788899
Q ss_pred cCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 009442 431 LFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKGRSLEE 502 (534)
Q Consensus 431 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (534)
.+|++.|++++|+.+....+|++++|.+.+ +.+ .++..++.+++++.+++.++.+++||+++++.+|
T Consensus 438 ~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 438 LYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred cccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 999999999999999999999999999988 432 2556688888888888888888889998877654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=302.86 Aligned_cols=438 Identities=24% Similarity=0.307 Sum_probs=319.6
Q ss_pred hhHHHHHHHHHHHHHHhhhh--HHHHHHHHhhhhhhcccCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHhHhHhhhh
Q 009442 19 WYHVTAIVIAGMGFFTDAYD--LFCISTVSKLLGRLYYYDPANPKHNPGKLPT--PINNFVIGVALVGTLTGQLFFGWLG 94 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~lg~~i~~~~~g~l~ 94 (534)
...........++.+..+++ ....+++...+.++...... ..+. .+.+++.++..+|..+++++.|+++
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~ 113 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDL-------STGEYSVRQGLLTSILNLGALVGSLLAGRLG 113 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhccccccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777776 55666666666654321111 2222 5679999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHH
Q 009442 95 DKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 174 (534)
Q Consensus 95 dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 174 (534)
|++|||+.++++.+++.+++++++++ +|+.+++++|++.|+|.|....+.+.|++|..|++.||...+..+...
T Consensus 114 d~~GRk~~l~~~~~~~~iG~ii~~~a------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~ 187 (513)
T KOG0254|consen 114 DRIGRKKTLLLAVVLFLIGAIIIALA------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFI 187 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHH
Confidence 99999999999999999999999999 559999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHH
Q 009442 175 GVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQ 254 (534)
Q Consensus 175 ~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~ 254 (534)
.+|..++..++....+ .+++||..+.+..+++++..+..+++||||+|+ .+.++.++
T Consensus 188 ~~Gi~~~~~~~~~~~~----------------------~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~ 244 (513)
T KOG0254|consen 188 TIGILLGYCINYGTSK----------------------VYAGWRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEE 244 (513)
T ss_pred HHHHHHHHHHhhhhcc----------------------CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHH
Confidence 9999999666655431 015799999999999988877788999999996 45566667
Q ss_pred HHHHHHhhhccccch---hhhhhh-----hhc--c-c-CcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 009442 255 AASDMGRVLDIEIDE---EHDKLS-----QFK--E-V-NKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDI 322 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~---~~~~~~-----~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (534)
+.+.+.+.++.+..+ +.+..+ +.. + + ...+++++...++ ..+.+.+..+.....++....|.+.+
T Consensus 245 a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 245 AKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKR---LIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHH---HHHHHHHHHHHHHhCCceEEeehHHH
Confidence 777777666632211 111111 000 0 0 1222333112221 23344444444545666667777777
Q ss_pred cccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc---
Q 009442 323 FPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN--- 399 (534)
Q Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (534)
++..|..... . ....+..+..+++..++.++.||+|||++++.+...+.+++++++........
T Consensus 322 f~~~g~~~~~-~------------~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~ 388 (513)
T KOG0254|consen 322 FKSAGLKSDT-F------------LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN 388 (513)
T ss_pred HHhcCCCCch-H------------HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Confidence 7777665432 1 15666667778888888999999999999999999999999988876553221
Q ss_pred ---chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHH
Q 009442 400 ---DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVL 476 (534)
Q Consensus 400 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (534)
...+..+...++....+..+..++.|.+.+|.+|.+.|+++.++....+++.+.+-...+....+. .+....|.
T Consensus 389 ~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~---~~~~~~f~ 465 (513)
T KOG0254|consen 389 SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA---LGIGGTFG 465 (513)
T ss_pred cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHH
Confidence 224445555556666667788899999999999999999999999999998887776666665542 12345566
Q ss_pred HHHHHHHHHHH-HH-HhhccCCCCCcccccccCCCCC
Q 009442 477 VLAFTNMLGFC-CT-FLVTETKGRSLEEISGEDGGVG 511 (534)
Q Consensus 477 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 511 (534)
.++.++.+... .. +++||||+++.+|+++...+..
T Consensus 466 ~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 466 YFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred HHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 66666666555 33 3679999999998887655443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.54 Aligned_cols=385 Identities=16% Similarity=0.234 Sum_probs=282.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
.+++|.++.++.+..+.++++...++...|.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 77 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEF------------GLDVAQMGWAFSAGILGLLPGALLGGRLADRI 77 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447888999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|||+++..+.++..++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|
T Consensus 78 g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 78 GRKRILIVSVALFGLFSLATAQA------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred CCchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888 459999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
..+++.++..+. +..+||+.|++.++..++. .+...++||+|++. .++++++..
T Consensus 152 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ 206 (406)
T PRK11551 152 GALASVIGVLAA-----------------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA--QAAGAGKQR 206 (406)
T ss_pred HHHHHHHHHHHc-----------------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH--hccCcchhh
Confidence 999999887665 4567999999876654443 34455678887642 111110000
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVN 336 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 336 (534)
+.. ....++.+..++ .......++......+....+.|.+.++.|+++...+.
T Consensus 207 ~~~----------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~- 259 (406)
T PRK11551 207 APV----------------------LRALFGEGRATA----TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGL- 259 (406)
T ss_pred hhh----------------------HHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhH-
Confidence 000 000011111111 11122222333334455555667777776666554433
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHh
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFA 416 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (534)
......++.+++.++.|++.||+|||+.+..+.+...++++.+... .+.+. ..+..+..++.
T Consensus 260 -----------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~g~~ 321 (406)
T PRK11551 260 -----------VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA------PSFAG-MLLAGFAAGLF 321 (406)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc------CcHHH-HHHHHHHHHHH
Confidence 5667778889999999999999999998887666655555444332 12222 22222333333
Q ss_pred hcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 417 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..+..+..+++..|.+|++.|+++.|+.+....+|..++|.+.+.+.+..+ ++...+.......+++.++.+++
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 333455667788999999999999999999999999999999999987422 55556666666666666655544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=303.07 Aligned_cols=424 Identities=14% Similarity=0.117 Sum_probs=286.0
Q ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 009442 7 AVLNALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTG 86 (534)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~ 86 (534)
|..++.++..+.+..+.++..++++++....++..++.+.|.+.+++ +++..+.|++.+++.+++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~------------~~s~~~~g~~~s~~~~~~~~~ 80 (467)
T PRK09556 13 DLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTY------------GLSTTELGMIGLGFSITYGVG 80 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhc------------CCCHHHHHHHHHHHHHHHHHH
Confidence 44444445556666788888889999999999999999999999998 999999999999999999999
Q ss_pred hHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhH
Q 009442 87 QLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF 166 (534)
Q Consensus 87 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~ 166 (534)
+++.|+++||+|||+++..+.++++++.++.++.... ..++++.+++.|+++|++.+...+...+++.||+|+++||++
T Consensus 81 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a 159 (467)
T PRK09556 81 KTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS-GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRF 159 (467)
T ss_pred HhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeee
Confidence 9999999999999999999988888887776653110 015699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccch
Q 009442 167 IAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYT 245 (534)
Q Consensus 167 ~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~ 245 (534)
++++..+.++|.++++.++.++..... ..+||..|.+.+++.++ .++..++.+++|+..
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~--------------------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~ 219 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFF--------------------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL 219 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhc--------------------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc
Confidence 999999999999999988876653210 12599988886666554 344444567666421
Q ss_pred hhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 009442 246 AIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA 325 (534)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (534)
...+.++ ... ....++.+. ++.++.+..+.+.+...+. +.++...+..++....+++...+.|.++++
T Consensus 220 --~~~~~~~---~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~ 287 (467)
T PRK09556 220 --GWGKAEE---IFG----EPISEEDKE-TESTDMTKWQIFVEYVLKN--PVIWLLCFANIFLYIVRIGIDNWSPVYAFQ 287 (467)
T ss_pred --CCCChhh---ccc----Cccchhhhc-cccccCcHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 000 000000000 0000000011111111221 234455555555555666677788887754
Q ss_pred -ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q 009442 326 -MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWL 404 (534)
Q Consensus 326 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (534)
.|++..+.+. ......++.+++.+++|+++||++||+.+.....+..++...+..... .+.+.
T Consensus 288 ~~g~s~~~a~~------------~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 351 (467)
T PRK09556 288 ELGFSKEDAIN------------TFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA----TSEYM 351 (467)
T ss_pred ccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc----CcHHH
Confidence 5665543322 556667788999999999999999988766554443333222222111 12222
Q ss_pred HHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhccc---------ccccchhHH
Q 009442 405 FATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLD---------EDSKKIQHA 474 (534)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~---------~~~~~~~~~ 474 (534)
..+. .+..++...+..........|.+|++.||++.|+.+..+++ |.+++|.+.|.+.+. ....+|+..
T Consensus 352 ~~~~-~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~ 430 (467)
T PRK09556 352 YLAS-LFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGT 430 (467)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHH
Confidence 2122 22222222222222234567999999999999999999997 779999999999881 012468889
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009442 475 VLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (534)
|.+..++.+++.+..+++
T Consensus 431 f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 431 FAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888888887776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=290.33 Aligned_cols=400 Identities=13% Similarity=0.120 Sum_probs=274.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
++.++.++....++.+...+++..++...|.+.+++ |+|..+.|++.+.+.+++.+++++.|+++||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~ 85 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADL------------GLSRSDIGLLATLFYITYGVSKFVSGIVSDRS 85 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc
Confidence 445666777778888888899989999999999988 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|||+++.++.++.+++.++++++ ++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+.++|
T Consensus 86 g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g 159 (434)
T PRK11663 86 NARYFMGIGLIATGIINILFGFS------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG 159 (434)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 569999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
..+++.+++.+. +..+||+.|++.++..++ .++..+++||+|++....+.++.+.
T Consensus 160 ~~~~~~~~~~l~-----------------------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~- 215 (434)
T PRK11663 160 GALIPLVVGAIA-----------------------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH- 215 (434)
T ss_pred HHHHHHHHHHHH-----------------------HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-
Confidence 999999999887 356799999987766554 3444556788775411011000000
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-ccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 335 (534)
+. . +..++.+ .++.+.++.++....++ +.++...+..+.....++....+.|.++. +.|++....+.
T Consensus 216 ~~-~-----~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~ 283 (434)
T PRK11663 216 DA-L-----ELAQQQE----GAGLSRKEILTKYVLLN--PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANS 283 (434)
T ss_pred cc-c-----ccchhcc----ccCCChhhhHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 00 0 0000000 00001111121111111 12333334344444455556667777774 45665544332
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh--hh-HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI--GR-FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLT 412 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (534)
......++.+++.++.|+++||+ ++ +...........+....+..... .+... .....+.
T Consensus 284 ------------~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~ 346 (434)
T PRK11663 284 ------------AVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF----ASYVM-QAACFFT 346 (434)
T ss_pred ------------HHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc----ccHHH-HHHHHHH
Confidence 56667788899999999999998 33 33222222222222211111111 12222 1111222
Q ss_pred HHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 413 FFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 413 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
.++...+..........|.+|++.|+++.|+.+...++|.+++|.+.+.+.+ ..||...|.+.+++.+++++..+.
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 347 IGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE---IWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH---hcccHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222233456899999999999999999999999999999999987 457888999888888877766554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=288.94 Aligned_cols=401 Identities=21% Similarity=0.244 Sum_probs=258.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchh---HHHHHHHHHHHHHHHhHhHhhh
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPI---NNFVIGVALVGTLTGQLFFGWL 93 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~g~~~s~~~lg~~i~~~~~g~l 93 (534)
.++++++.+..++++.+.+++|+..++...|.+.++++.. +.+..+ .+.+.+..+++..++++++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l 86 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPS---------GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRI 86 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888899999999999999999999987421 223333 3444555666666999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHhccCCCc--cchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHH
Q 009442 94 GDKLGRKKVYGITLILMVICAICSGLSFGSSA--RSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF 171 (534)
Q Consensus 94 ~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~ 171 (534)
+||+|||+++..+.+++++++++++++++... ..++..+++.|+++|++.|+.++...+++.|++|+++|+++.++.+
T Consensus 87 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~ 166 (432)
T PRK10406 87 ADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQY 166 (432)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHH
Confidence 99999999999999999999999999865210 0123468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCC
Q 009442 172 AMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGN 251 (534)
Q Consensus 172 ~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~ 251 (534)
.+...|.++++.+...+.....+. ....+|||++|++++++.++.+.....+||+|++. .++.
T Consensus 167 ~~~~~G~~~~~~~~~~~~~~~~~~---------------~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~--~~~~ 229 (432)
T PRK10406 167 VTLIGGQLLALLVVVVLQQTLEDA---------------ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE--TRAL 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH--Hhhh
Confidence 888889888887766655322110 01257899999998888877766666678876541 0000
Q ss_pred hHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccc
Q 009442 252 AKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVH 330 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 330 (534)
+ + +.+.+++++++ +.........+.....++....+.|.++.+ .|.+.
T Consensus 230 -~-------------------~-----~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~ 278 (432)
T PRK10406 230 -K-------------------E-----AGSLKGLWRNR------RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHA 278 (432)
T ss_pred -c-------------------c-----cccHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 0 0 00111122111 111112222223345566677777777653 45443
Q ss_pred cccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 009442 331 KAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYG 410 (534)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (534)
.+.+ ....+..+...++.++.|+++||++||+.+.....+..+....+..... .. .+.+....+..
T Consensus 279 ~~~~------------~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 344 (432)
T PRK10406 279 NVAS------------GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NV-SSPYAAFGLVM 344 (432)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHH
Confidence 2221 1344445556677888899999999999877665544333322211111 00 12222111111
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
+....... ..+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+.+.. .+ .+...+++.++..+++.+..
T Consensus 345 ~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g--~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 345 CALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IG--METAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hC--CCcHHHHHHHHHHHHHHHHH
Confidence 11111111 1234556789999999999999999988775 34457777775532 11 34555666666666666665
Q ss_pred Hhh
Q 009442 490 FLV 492 (534)
Q Consensus 490 ~~~ 492 (534)
+++
T Consensus 421 ~~l 423 (432)
T PRK10406 421 LML 423 (432)
T ss_pred HHh
Confidence 554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=290.07 Aligned_cols=369 Identities=20% Similarity=0.261 Sum_probs=258.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
+++++.+..+.++.+.++++.....+..|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g 81 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADL------------GLTDMEGAFLATAAFIGRPFGGALFGLLADKFG 81 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56677788888999999999999999999999988 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
||+++.++.++.+++.++++++ ++++.++++|+++|++.+...+....++.|++|+++|+++.++...+.++|.
T Consensus 82 ~r~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 155 (426)
T PRK12307 82 RKPLMMWSIVAYSVGTGLSGLA------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN 155 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence 9999999999999999999998 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASD 258 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 258 (534)
++++.+...+. +..+||+.|++..+..++.+......||++++. .++.+++
T Consensus 156 ~~~~~l~~~l~-----------------------~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~---- 206 (426)
T PRK12307 156 IIAAYFMPSFA-----------------------EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE--EAKLSGK---- 206 (426)
T ss_pred HHHHHHHHHHc-----------------------ccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH--Hhhhhcc----
Confidence 99988887765 456799999986555444443333456654431 1100000
Q ss_pred HHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchh
Q 009442 259 MGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNAL 338 (534)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 338 (534)
.+++.+..+. .+...++.++++.. +.........+......+....+.|.++++.|+++...+
T Consensus 207 --------~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---- 269 (426)
T PRK12307 207 --------GKHSQSAWSV-FSLSMKGLFNRAQF----PLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVS---- 269 (426)
T ss_pred --------ccccccchhh-hhHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH----
Confidence 0000000000 00011112221111 111111122222222223334455666665555433222
Q ss_pred hhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 339 REVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
.......++.+++.++.+++.||++||+.+..+.++..+..+.+.... ...........+...+...
T Consensus 270 --------~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 336 (426)
T PRK12307 270 --------NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-----QDNYLLLGACLFGLMATNV 336 (426)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----cccHHHHHHHHHHHHHhcc
Confidence 255667778899999999999999999988888776655544333221 1222222222222222222
Q ss_pred CCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.+
T Consensus 337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred cHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334455677899999999999999999999999999999999987
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=286.13 Aligned_cols=402 Identities=16% Similarity=0.219 Sum_probs=265.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHH-----HHHHHHHHHHhHhHhh
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVI-----GVALVGTLTGQLFFGW 92 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~lg~~i~~~~~g~ 92 (534)
.++++.+..+.++.+.+++|...++.+.|. +.+++.. +.++. .+++. ++.+++..+++++.|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~ 86 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFP----------QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGH 86 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345667788888999999999999988875 4554421 23333 34443 4566778899999999
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHH--------HHHHHHHHHHHhccccccchhhhhhhccccchhh
Q 009442 93 LGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIG--------TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRG 164 (534)
Q Consensus 93 l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg 164 (534)
++||+|||+++..+.+++++++++++++++ +. .++++|+++|++.|+.++....++.|++|+++|+
T Consensus 87 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 160 (438)
T PRK09952 87 FGDRLGRKRMLMLTVWMMGIATALIGLLPS------FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA 160 (438)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999955 54 5889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccc
Q 009442 165 AFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244 (534)
Q Consensus 165 ~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 244 (534)
+..+....+..+|.+++..+...+....... ....++||++|++.+++.++.+......||+|++
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~---------------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~ 225 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDE---------------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF 225 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 9999999999999998888777665332210 1135789999999888776665555668898876
Q ss_pred hhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 009442 245 TAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP 324 (534)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (534)
. .++.+.++. + ++ .+.. +...+ +.+.........+.....+|....+.+.+.+
T Consensus 226 ~--~~~~~~~~~-----------~---~~---------~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 278 (438)
T PRK09952 226 E--QQQHEQAAA-----------K---KR---------IPVI-EALLR-HPGAFLKIIALRLCELLTMYIVTAFALNYST 278 (438)
T ss_pred H--HHHhhcccc-----------c---cc---------CCHH-HHHHH-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 111000000 0 00 0000 00111 1111222222333344455655666666553
Q ss_pred c-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhH
Q 009442 325 A-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKW 403 (534)
Q Consensus 325 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (534)
+ .+.+... .........+..+++.++.|+++||+|||+.+..+.++..++...+..... . .+..
T Consensus 279 ~~~g~s~~~------------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 343 (438)
T PRK09952 279 QNLGLPREL------------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--A-QSIF 343 (438)
T ss_pred HhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--c-CChH
Confidence 3 3333211 011233445566778889999999999999888776665544433322211 0 1222
Q ss_pred HHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHH-hhhhHhhhhhhhhcccccccchhHHHHHHHHHH
Q 009442 404 LFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGK-AGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482 (534)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (534)
....+..+..++......+..+++..|.+|++.|+++.|+.+..+. +++.++|.+.+.+.+..+ .+|...+.+.+++.
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~ 422 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGC 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 2222222222222222234566788999999999999999776654 889999999999876432 24677777777888
Q ss_pred HHHHHHHHhhccC
Q 009442 483 MLGFCCTFLVTET 495 (534)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (534)
+++.+..+.++|+
T Consensus 423 ~i~~v~~~~~~~~ 435 (438)
T PRK09952 423 LISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHcccc
Confidence 8887777766653
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=291.83 Aligned_cols=404 Identities=17% Similarity=0.211 Sum_probs=270.8
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD 95 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d 95 (534)
+.++++|+.+..++++.+...++....++..|.+.+++ |++..+.+++.+.+.++..+++++.|+++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 80 (496)
T PRK03893 13 HLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF------------GLTTVQAASLISAAFISRWFGGLLLGAMGD 80 (496)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999988 999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHH
Q 009442 96 KLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 175 (534)
Q Consensus 96 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 175 (534)
|+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..
T Consensus 81 r~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (496)
T PRK03893 81 RYGRRLAMVISIVLFSVGTLACGFA------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS 154 (496)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHH
Q 009442 176 VGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQA 255 (534)
Q Consensus 176 lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 255 (534)
+|..+++.+++.+. +..+||+.|++..+..++.++....+||++++. .++++++.
T Consensus 155 ~g~~~~~~~~~~l~-----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~ 209 (496)
T PRK03893 155 IGAVVAAQVYSLVV-----------------------PVWGWRALFFIGILPIIFALWLRKNLPEAEDWK--EKHAGKAP 209 (496)
T ss_pred HHHHHHHHHHHHHh-----------------------ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhh--hhcccccc
Confidence 99999999999877 456899999886666555555555678776542 11111100
Q ss_pred HHHHHhhhccccchhhhhhhhh-cccCcccchhHH------------------------HhhhhhhHHHHHHHHHHHHHH
Q 009442 256 ASDMGRVLDIEIDEEHDKLSQF-KEVNKYPLLSRE------------------------FFQRHGLHLIGTMSTWFLLDI 310 (534)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 310 (534)
.+...+.......+........ ........+... ................+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (496)
T PRK03893 210 VRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFL 289 (496)
T ss_pred chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 0000000000000000000000 000000000000 000000000000001111111
Q ss_pred HHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009442 311 AFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLI 389 (534)
Q Consensus 311 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~ 389 (534)
..+....+.|.+++ +.|++..+.+. ......++.+++.++.+++.||+|||+.+..+..+..+..+.
T Consensus 290 ~~~~~~~~lp~~l~~~~g~~~~~~g~------------~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 357 (496)
T PRK03893 290 YSWPIQALLPTYLKTDLGYDPHTVAN------------VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP 357 (496)
T ss_pred ccchHHHHHHHHHHhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 11123345566663 55555443332 667777888899999999999999999888776655554433
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccccc
Q 009442 390 IGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSK 469 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (534)
+.... ...........+...+...+..+...++..|.+|++.|++++|+.+....+|+.++|.+.+.+.+ ..
T Consensus 358 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~---~~ 429 (496)
T PRK03893 358 VFAIG-----GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ---RL 429 (496)
T ss_pred Hhhcc-----ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc---cC
Confidence 32221 12222222222222222223344555678899999999999999999999999999999999987 44
Q ss_pred chhHHHHHHHHHH
Q 009442 470 KIQHAVLVLAFTN 482 (534)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (534)
++...+...++..
T Consensus 430 g~~~~~~~~~~~~ 442 (496)
T PRK03893 430 DLGTALASLSFSL 442 (496)
T ss_pred ChHHHHHHHHHHH
Confidence 6776665544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=285.59 Aligned_cols=394 Identities=18% Similarity=0.216 Sum_probs=272.2
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
.++++|+.+..++++.+.++++....+++.|.+.+++ +++..+.+++.+++.++..+++++.|+++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr 73 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF------------GLTTVDAASLISAALISRWFGALMFGLWGDR 73 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV 176 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l 176 (534)
+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+
T Consensus 74 ~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 147 (405)
T TIGR00891 74 YGRRLPMVTSIVLFSAGTLACGFA------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV 147 (405)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence 999999999999999999999988 45999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHH
Q 009442 177 GIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 177 G~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
|..+++.+++.+.... ..+||+.|++.+++.++.++....+||++++... ++++++..
T Consensus 148 g~~~~~~l~~~l~~~~---------------------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 205 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVW---------------------GDGWRALFFISILPIIFALWLRKNIPEAEDWKEK-HAGKALVR 205 (405)
T ss_pred HHHHHHHHHHHHHHhc---------------------CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH-hhhhhhhh
Confidence 9999999998887321 1259999998777776666666678988765211 11111111
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-ccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 335 (534)
+..++..+.+. ..++..++ .... .+.. .++........................+.|.++. +.|++..+.+.
T Consensus 206 ~~~~~~~~~~~-~~~~~~~~----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 278 (405)
T TIGR00891 206 TMVDILYGGEH-RIANIVMT----LAAA-MVQS-AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVAN 278 (405)
T ss_pred hHHHHHhccch-hhhhhhhh----hhHH-hhhh-hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHH
Confidence 11111111000 00000000 0000 0000 0111111111222222222233333344455543 34544433222
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
......++.+++.++.+++.||+|||+.+..+..+..+....+... . .+.+. ..+..+..++
T Consensus 279 ------------~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~~ 340 (405)
T TIGR00891 279 ------------IVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-G----ANVAV-LGLGLFFQQM 340 (405)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-C----CchHH-HHHHHHHHHH
Confidence 5666778889999999999999999998887766543322222211 1 12222 2222222222
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHH
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLV 477 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (534)
...+..+....+..|.+|++.|++++|+.+...++|..++|.+.+.+.+..+ .|...+..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g--~~~~~~~~ 400 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD--EYGTALAS 400 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHh
Confidence 2333445566788999999999999999999999999999999999988432 25544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=264.16 Aligned_cols=377 Identities=15% Similarity=0.132 Sum_probs=283.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
++..+..++.+.++.|..+.....+..++|++.+++ ++|..+.|+..|.|.++..+++++...+.||+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl------------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~ 75 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADL------------GVSEGAAGQLITAYALGVALGAPLLALLTGRL 75 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445567788888889999999999999999999999 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
.||++++..+.++.+++++++++++ |+.++++|++.|++.|..++...++..+..|+++|++++++...+.+++
T Consensus 76 ~Rr~lLl~~l~lFi~~n~l~alAp~------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA 149 (394)
T COG2814 76 ERRRLLLGLLALFIVSNLLSALAPS------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLA 149 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999955 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
.++|.+++.++. +.+|||..|++.+..+++.++ .+..+| |+. ..++...+..
T Consensus 150 ~v~GvPLGt~ig-----------------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~--~~~~~~~~~~ 202 (394)
T COG2814 150 TVLGVPLGTFLG-----------------------QLFGWRATFLAIAVLALLALLLLWKLLP--PSE--ISGSLPGPLR 202 (394)
T ss_pred HHHhccHHHHHH-----------------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--CCCCCCcchh
Confidence 999999999998 456699999998887777554 455678 221 1111101000
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-ccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 335 (534)
+. . +...++. ++......++.....|....|...+++ ..|++......
T Consensus 203 ~~------------------------~----~~l~~p~---v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~ 251 (394)
T COG2814 203 TL------------------------L----RLLRRPG---VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSL 251 (394)
T ss_pred HH------------------------H----HHhcCch---HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHH
Confidence 00 0 1111111 222222233333334444444444444 44555544333
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
.....+++.++|+.++|++.|| +.|+.+.....+..+.++.+.+... +.+.......+ .++
T Consensus 252 ------------~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~-----~~~~~~~~~~~-wg~ 312 (394)
T COG2814 252 ------------VLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGA-----SPALALALLFL-WGF 312 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHH-HHH
Confidence 7888899999999999999999 8888888887887777777666532 22222222222 333
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
..............+ .-++.++.+.++.....++|..+|..+.|.+.+ ..|+....++.+.+.+++.++.+...
T Consensus 313 a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~---~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 313 AFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD---ALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333344 335778999999999999999999999999998 46888888998888888888776543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=273.97 Aligned_cols=358 Identities=12% Similarity=0.030 Sum_probs=245.3
Q ss_pred hhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHH
Q 009442 36 AYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAI 115 (534)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 115 (534)
......+++.+|.+.+++ ++|..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+
T Consensus 4 ~~~~~~~~~~lp~i~~~~------------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 71 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDI------------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG 71 (368)
T ss_pred hHHHHHHHhhHHHHHHHh------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 344567789999999999 99999999999999999999999999999999999987665555544433
Q ss_pred HHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009442 116 CSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL 195 (534)
Q Consensus 116 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~ 195 (534)
..... ++++.++++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.+++++++.++.
T Consensus 72 ~~~~~------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~------ 138 (368)
T TIGR00903 72 RLLDP------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY------ 138 (368)
T ss_pred HHHHh------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 22332 3499999999999999986 5566677799999999999999999999999999999999987
Q ss_pred CCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhh
Q 009442 196 FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKL 274 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (534)
++.|||+.|++.++++++ .++..+++||+|++. .++. +..+ ..
T Consensus 139 -----------------~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~--~~~~--~~~~---------------~~ 182 (368)
T TIGR00903 139 -----------------TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA--AEGF--GFKD---------------AV 182 (368)
T ss_pred -----------------HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCc--chHH---------------HH
Confidence 456899999996665544 455566789998752 1100 0000 00
Q ss_pred hhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHh
Q 009442 275 SQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALL 354 (534)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (534)
+ +.++++++ +.++.....+++....++....|.|.++++.+++.. .+. ...+..+
T Consensus 183 ~-----~~~~ll~~-------~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~------------~~~l~~~ 237 (368)
T TIGR00903 183 K-----EFGALAGR-------KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGD------------AVALAIL 237 (368)
T ss_pred H-----HHHHHHcC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHH------------HHHHHHH
Confidence 0 01111211 224556666777777888888899999877665422 111 2233333
Q ss_pred hcchhHHHHHHHHHhhhhH---HHHH-HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccc
Q 009442 355 GTFPGYWFTVFLIEKIGRF---IIQL-VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAE 430 (534)
Q Consensus 355 ~~~~~~~~~g~l~d~~gr~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 430 (534)
. +.+..++++||..|| +... ....+.++....+... .+.+.......+ .+++.....+..+++.+|
T Consensus 238 ~---g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 307 (368)
T TIGR00903 238 A---GLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------LNRLALFAFIGI-AGLLMLPAYAIIMDWIGK 307 (368)
T ss_pred H---HHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------cccHHHHHHHHH-HHHhhhhhHHHHHHHHHH
Confidence 3 333457778876543 3322 2333333333222211 122222222222 223233344556678899
Q ss_pred cCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 431 LFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 431 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
.+|++.|+++.|+.+..++++++++|.+.+.+.. +....|.++++..+++.+...++++
T Consensus 308 ~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 308 FCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred hcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999887774 6677888888888887777654443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=333.75 Aligned_cols=435 Identities=28% Similarity=0.456 Sum_probs=307.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 28 AGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
..++.+..++|...++...+......+...+ +.+.+.+.+..+.+++.++..+|..+|+++.|+++||+|||+++.++.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWS-SSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccc-cccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4566688999999988887766633322211 111111225678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~ 187 (534)
++..+++++.++++.. ++++.+.++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..
T Consensus 84 ~~~~i~~~~~~~~~~~---~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~ 160 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSY---NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI 160 (451)
T ss_pred cccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999521 1599999999999999999999999999999999999999999999999999988888765
Q ss_pred HHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhcccc
Q 009442 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEI 267 (534)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (534)
+.. ..++.+||..+++.++++++.++..+++||||+|+ ..+++.+|+.+.+++.++.+.
T Consensus 161 ~~~--------------------~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~~ 219 (451)
T PF00083_consen 161 VSY--------------------YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKEI 219 (451)
T ss_pred ccc--------------------cccccccccccccccccccccccccccccccccee-ccccccccccccccccccccc
Confidence 531 11245799999999999988888888999999997 555566677777766543322
Q ss_pred chh-hhhh-hhhcc-----cCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhh
Q 009442 268 DEE-HDKL-SQFKE-----VNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALRE 340 (534)
Q Consensus 268 ~~~-~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 340 (534)
.++ .++. ++.++ ....++++.+..++. ....+.+..+.....++....+.+.++++.+.+... .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--~----- 290 (451)
T PF00083_consen 220 EDEEIEEIKAEKKESQESKASWRDLFRNKKYRKR--LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSF--L----- 290 (451)
T ss_pred ccccccccccccccccccceeeeecccccccccc--cccccccccccccccccccccccccccccccccccc--c-----
Confidence 211 1111 11111 123344444331111 122222222222233344455666666666665541 1
Q ss_pred HhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHHHHHhh
Q 009442 341 VFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDN---KWLFATLYGLTFFFAN 417 (534)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 417 (534)
......+..+++.+++.+++||+|||++++.+..++.++.+.++.......+.+ ....+....+......
T Consensus 291 -------~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 363 (451)
T PF00083_consen 291 -------ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFS 363 (451)
T ss_pred -------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccc
Confidence 344555667777788889999999999999998888888777751111111111 2233333333334445
Q ss_pred cCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 418 FGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 418 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
.++.+..+.+..|++|++.|+++.|++...+++++++++.+.+.+.+. .+....+.+.+++++++.++.+ ++||||
T Consensus 364 ~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 364 LGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---LGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 567788889999999999999999999999999999999998888763 2324456666666666666555 679999
Q ss_pred CCCccccccc
Q 009442 497 GRSLEEISGE 506 (534)
Q Consensus 497 ~~~~~~~~~~ 506 (534)
+++.+|++++
T Consensus 441 g~~l~ei~~~ 450 (451)
T PF00083_consen 441 GKTLEEIQEM 450 (451)
T ss_pred CCCHHHHHhh
Confidence 9999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=275.21 Aligned_cols=373 Identities=12% Similarity=0.098 Sum_probs=259.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
+++|..+..+.++.+....+.....+++|.+.+++ |+|..+.|++.+.+.+++.+++++.|+++||+|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~------------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 72 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSF------------HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVE 72 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555555554455555667789999988 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
||+++..+.++.++++++++++ +|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|.
T Consensus 73 ~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 73 RRKLLIGLFVLFIASHVLSALA------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999998 5599999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAAS 257 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~ 257 (534)
.+++.+++.+. +..|||+.|++.++..++..+ ....+||.|+. ++ +..+
T Consensus 147 ~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~--~~~~ 196 (390)
T PRK03545 147 VLGLPLGRVIG-----------------------QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HS--GSLK 196 (390)
T ss_pred HHHhhHHHHHH-----------------------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Cc--chHH
Confidence 99999999887 345799999997776665443 33445664321 00 0000
Q ss_pred HHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccc
Q 009442 258 DMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVN 336 (534)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 336 (534)
+. .+.++++. ++......+......+....+.+.+..+ .|.++...+.
T Consensus 197 ~~-----------------------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~- 245 (390)
T PRK03545 197 SL-----------------------PLLFRRPA-------LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATL- 245 (390)
T ss_pred HH-----------------------HHHHhCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH-
Confidence 00 01111111 1111111122222223233333444433 3554443222
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHh
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFA 416 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (534)
......++.+++.++.+++.||++||... .+..+..++...+... . ++.+ ...+..+..+..
T Consensus 246 -----------~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~-~----~~~~-~~~~~~~l~g~~ 307 (390)
T PRK03545 246 -----------LLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA-A----NSEW-HLSVLSIFWGIA 307 (390)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH-h----chHH-HHHHHHHHHHHH
Confidence 56666778899999999999999988654 3444444433332221 1 1222 222233333333
Q ss_pred hcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 417 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
.....+.......+..| +.|++++|+.+...++|..+||.+.|.+.+ ..+++..+.+.+++.+++.+.....
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL---HLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444456667766 578999999999999999999999999987 5688888988888888877776654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=278.92 Aligned_cols=416 Identities=13% Similarity=0.097 Sum_probs=267.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
.++++|.++..+++.......++..++...|.+.++ +++..+.+++.+++.+++.+++++.|+++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-------------g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr 89 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------------GFSRGDLGFALSGISIAYGFSKFIMGSVSDR 89 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-------------CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 345566666666677777777777788888887653 7899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV 176 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l 176 (534)
+|||++++.+.++.+++.+++++++... ++++.+++.|++.|++.+...+.....+.|++|+++|+++++++..+.++
T Consensus 90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 167 (452)
T PRK11273 90 SNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 167 (452)
T ss_pred cCCchhHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888763211 35788999999999999998888888999999999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHH
Q 009442 177 GII-FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQ 254 (534)
Q Consensus 177 G~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~ 254 (534)
|.. .+++++..+. ...+||+.|++.+++.++ .++..+++||+|+.. ..+++++
T Consensus 168 g~~~~~~l~~~~~~-----------------------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~ 222 (452)
T PRK11273 168 GGGLPPLLFLLGMA-----------------------WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSC--GLPPIEE 222 (452)
T ss_pred hhhHHHHHHHHHHH-----------------------HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc--CCCChhh
Confidence 864 4554433332 123699999987766555 455556778877531 1111111
Q ss_pred HHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-cccccccc
Q 009442 255 AASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAP 333 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 333 (534)
..++.. .+.++ ++.++.+..+.+.+...+ .+.++...+..++.....+....+.|.++++ .+++....
T Consensus 223 ~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~ 291 (452)
T PRK11273 223 YKNDYP----DDYNE-----KHEQELTAKQIFMQYVLP--NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 291 (452)
T ss_pred hhhccc----ccccc-----ccCCCccHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 100000 00000 000000111111111111 1224444444444445556667788888875 35554432
Q ss_pred ccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh--hhHHHH-HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 009442 334 QVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI--GRFIIQ-LVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYG 410 (534)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (534)
+. ...+..++.+++.++.|+++||+ +||... .....+..++.+.+..... .+.+.... ..
T Consensus 292 ~~------------~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~-~~ 354 (452)
T PRK11273 292 SW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA----GNPTVDMA-CM 354 (452)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc----cChHHHHH-HH
Confidence 22 45566678888999999999999 455432 2222222222222221111 12222211 11
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhH-hhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMI-GAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
+..+....+.......+..|.+|++.||+++|+.+...++|+.+ +|.+.+.+.+ ..||...|.++++++++++++.
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~---~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH---HhcchHHHHHHHHHHHHHHHHH
Confidence 22222112222223345679999999999999999999888655 7999999887 4578889988888888888877
Q ss_pred HhhccCCCCCcccc
Q 009442 490 FLVTETKGRSLEEI 503 (534)
Q Consensus 490 ~~~~~~~~~~~~~~ 503 (534)
.++...++|++||.
T Consensus 432 ~~~~~~~~~~~~~~ 445 (452)
T PRK11273 432 IVVMIGEKRHHEEL 445 (452)
T ss_pred HHHhccccchHHHH
Confidence 76544444444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=282.30 Aligned_cols=418 Identities=13% Similarity=0.099 Sum_probs=281.0
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccC----------CCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYD----------PANPKHNPGKLPTPINNFVIGVALVGTLT 85 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~g~~~s~~~lg~~i 85 (534)
...+.+|.++.+++++....+.|+..++...+.+.++-... .++..+.|.+++..+.|++.+.+.+++.+
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 35667888888999999999999999999998876532111 11122336689999999999999999999
Q ss_pred HhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhh
Q 009442 86 GQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGA 165 (534)
Q Consensus 86 ~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~ 165 (534)
++++.|+++||+|||+++..+.++++++.+++.++.. .+++.+++.|+++|++.+...+....++.||+|+++|++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~ 167 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSR 167 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999888765532 347889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCC-cchHHHHHHhhHHHHHHHHH-HhcccCCcc
Q 009442 166 FIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGD-YLWRIVLMLGALPALTTYYW-RMKMPETGR 243 (534)
Q Consensus 166 ~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wr~~~~~~~i~~~~~~~~-~~~~~esp~ 243 (534)
++++...+..+|.++++.+++.+. +. .+||+.|++.++..++..+. ..+.+|+|+
T Consensus 168 ~~~~~~~~~~~g~~i~~~l~~~l~-----------------------~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 168 LLGMSTSGFQLGTFIFLPISGWLC-----------------------ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999998887 34 37999999988776665444 445667775
Q ss_pred chhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 009442 244 YTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF 323 (534)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (534)
. +++..+++.+..++.. +++.++ .+....++....+ +.++...+..+.....++....+.|.++
T Consensus 225 ~---~~~~~~~~~~~i~~~~----~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 225 I---HPCISKFEKKYINSSL----QGQKGS------TRQSLPIKAIPKS---LPVWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred c---CCCCCHHHHHHHHhhc----ccccCC------CCCCCCHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 1111122212111100 000000 0000111111111 2245555556666666777777888887
Q ss_pred cc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHHHHHh
Q 009442 324 PA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFII--------QLVGFFMMSLFMLIIGIKY 394 (534)
Q Consensus 324 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~--------~~~~~~~~~~~~~~~~~~~ 394 (534)
++ .+.+....+. ...+..++.+++.+++|+++||+++|+. +..+......+...+....
T Consensus 289 ~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (465)
T TIGR00894 289 SWVLRVSGKENGL------------LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY 356 (465)
T ss_pred HHHhCcChHHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4554443332 5666778888999999999999864421 1111111111111111111
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHH
Q 009442 395 DYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHA 474 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (534)
. . ...+..+....+...+ .....+..+....|..|. .+|.+.|+.+..+.++++++|.+.+.+.+..+..+|...
T Consensus 357 ~--~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~ 431 (465)
T TIGR00894 357 L--S-AAFYLTIIILTLANAV-SSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIV 431 (465)
T ss_pred c--C-CchHHHHHHHHHHHHH-hhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHH
Confidence 0 0 1222222222222222 222233344455676665 789999999999999999999999988764322358888
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 009442 475 VLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~ 493 (534)
|.+.+++.+++.++..+++
T Consensus 432 f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 432 FLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred HHHHHHHHHHHHHHeeeee
Confidence 8888888888877665544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=277.52 Aligned_cols=402 Identities=14% Similarity=0.080 Sum_probs=256.4
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhH
Q 009442 11 ALDTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFF 90 (534)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~ 90 (534)
+.+....++++++.+.......+...++...+++..|.+.+++ +++..+.+++.+.+.+++.+++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------gls~~~~g~~~~~~~~~~~~~~~~~ 91 (476)
T PLN00028 24 EFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL------------NLTKSDIGNAGIASVSGSIFSRLAM 91 (476)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555667777777777888888888899999999988 9999999999999999999999999
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHH
Q 009442 91 GWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAV 170 (534)
Q Consensus 91 g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~ 170 (534)
|+++||+|||+++..+.++++++.++++++ ++++.+++.|++.|++.+.. .....++.|++|+++||+++++.
T Consensus 92 G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~ 164 (476)
T PLN00028 92 GPVCDLYGPRYGSAFLLMLTAPAVFCMSLV------SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIA 164 (476)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHH
Confidence 999999999999999999999999999988 45889999999999998864 44567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhccc-CCccchhhhc
Q 009442 171 FAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMP-ETGRYTAIIE 249 (534)
Q Consensus 171 ~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~-esp~~~~~~~ 249 (534)
....++|..+++.+...+........ ..+..|||+.|++.+++.++..+..++++ +.|+.
T Consensus 165 ~~~~~~g~~~~~~~~~~i~~~~~~~~--------------~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~----- 225 (476)
T PLN00028 165 AGWGNLGGGVTQLLMPLVFPLIKDAG--------------APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG----- 225 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------------CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----
Confidence 88888888888777765543322100 00234799999997777666544444443 43321
Q ss_pred CChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccc
Q 009442 250 GNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGL 328 (534)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 328 (534)
+.++..+. . +.+ +.+..+.++..... +..+...+.++......+....+.|.++.+ .|+
T Consensus 226 -~~~~~~~~-------~-~~~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~ 285 (476)
T PLN00028 226 -NYRELKKS-------G-TMP--------KDSFSKVLRYGVTN---YRTWILALTYGYSFGVELTMDNIIAEYFYDRFGL 285 (476)
T ss_pred -chhhHHhc-------C-ccc--------cccHHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 00110000 0 000 00000111111111 112333333333333333444455555533 355
Q ss_pred cccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHhhhcccch
Q 009442 329 VHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFI-------IQLVGFFMMSLFMLIIGIKYDYLKNDN 401 (534)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (534)
++...+ ....+..++.+++++++|+++||++||+ .......+.+++.+.+... .+
T Consensus 286 s~~~a~------------~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~------~~ 347 (476)
T PLN00028 286 SLETAG------------AIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA------NS 347 (476)
T ss_pred CHHHHH------------HHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc------ch
Confidence 544332 2677777889999999999999998652 2222222222222222111 12
Q ss_pred hHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHH
Q 009442 402 KWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFT 481 (534)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (534)
.+.......+...+ .....+..+++..+..| +.++++.|+.+..+.+|++++|.+.+. .+..+|...|.+.+++
T Consensus 348 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~----~~~~~y~~~f~~~~~~ 421 (476)
T PLN00028 348 LGAAIVVMILFSIF-VQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT----GSSYSTETGISLMGVM 421 (476)
T ss_pred HHHHHHHHHHHHHH-HHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh----cCCccHhhHHHHHHHH
Confidence 22222111121111 11122345556667654 688999999988777777777776541 1233688899999988
Q ss_pred HHHHHHHHHhhcc
Q 009442 482 NMLGFCCTFLVTE 494 (534)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (534)
.+++.++.++++.
T Consensus 422 ~~i~~~~~~~~~~ 434 (476)
T PLN00028 422 IIACTLPVAFIHF 434 (476)
T ss_pred HHHHHHHHHheec
Confidence 8888888777643
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=274.27 Aligned_cols=366 Identities=16% Similarity=0.173 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHH-HHHH-----HHHHHHHhHhHhhhh
Q 009442 21 HVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFV-IGVA-----LVGTLTGQLFFGWLG 94 (534)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~lg~~i~~~~~g~l~ 94 (534)
+++....++++.+.+++|+..++...|.+.+++ +.+..+.+.+ .+.. .++..+++++.|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~ 80 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTF------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYI 80 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 355678888999999999999999999999998 5655554433 2222 333457899999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHhccCCCccchHH--------HHHHHHHHHHHhccccccchhhhhhhccccchhhhH
Q 009442 95 DKLGRKKVYGITLILMVICAICSGLSFGSSARSVIG--------TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF 166 (534)
Q Consensus 95 dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~ 166 (534)
||+|||++++.+.+++++++++++++++ ++ .++++|+++|++.+...+....++.|++|+++|+++
T Consensus 81 Dr~Grr~~l~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 154 (434)
T PRK15075 81 DRVGRRKGLIVTLSIMASGTLLIAFVPG------YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFY 154 (434)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHH
Confidence 9999999999999999999999999854 54 468999999999999999899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchh
Q 009442 167 IAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTA 246 (534)
Q Consensus 167 ~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~ 246 (534)
+++...+..+|..+++.++..+....... ..++.|||++|++.++..++........||++++.
T Consensus 155 ~~~~~~~~~~g~~~g~~~g~~l~~~~~~~---------------~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~- 218 (434)
T PRK15075 155 TSWQSASQQVAVVFAALLGYLLNQWLSPA---------------QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL- 218 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH-
Confidence 99999999999999998888776432110 01357899999986554333333222334432210
Q ss_pred hhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-
Q 009442 247 IIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA- 325 (534)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (534)
.+++ + .+..+.++.. ++..+.........+.....++....+.|.++++
T Consensus 219 -~~~~------------~---------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 268 (434)
T PRK15075 219 -ARKH------------R---------------PSMREIFRSL--AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV 268 (434)
T ss_pred -Hhhh------------c---------------cccccHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0 0000111110 0111112222223333445566677778887765
Q ss_pred ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccchhHH
Q 009442 326 MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFML-IIGIKYDYLKNDNKWL 404 (534)
Q Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (534)
.|++..+... ...+..++.+++.++.|+++||+|||+.+..+..+..+... .+..... . .....
T Consensus 269 ~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 333 (434)
T PRK15075 269 LHLSAADSLL------------VTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--A-PSFAR 333 (434)
T ss_pred cCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--C-CchHH
Confidence 4665443222 55666777888999999999999999987776544432221 1111111 0 11111
Q ss_pred HHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhcccc
Q 009442 405 FATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLDE 466 (534)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~ 466 (534)
......+...+ .....+..+.+..|.+|++.|+++.|+.+..... ++.++|.+.+.+.+..
T Consensus 334 ~~~~~~~~~~~-~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 334 MLAVELWLSFL-YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHHHHH-HHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 11111111111 1122233446778999999999999997666654 5788999999888743
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=271.73 Aligned_cols=388 Identities=21% Similarity=0.327 Sum_probs=267.2
Q ss_pred hhcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhh
Q 009442 13 DTARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGW 92 (534)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~ 92 (534)
++.+.++++|+.+..+.+..+..+++....++..|.+.+++ |.+..+.+++.+.+.++..+++++.|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 74 (398)
T TIGR00895 7 RKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW------------GLDPVQLGFLFSAGLIGMAFGALFFGP 74 (398)
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc------------CCCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445566777778888888888999989999999999887 899999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHH
Q 009442 93 LGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 172 (534)
Q Consensus 93 l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 172 (534)
++||+|||+.+..+.++.+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...
T Consensus 75 l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 148 (398)
T TIGR00895 75 LADRIGRKRVLLWSILLFSVFTLLCALA------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFC 148 (398)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhh
Confidence 9999999999999999999999998888 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHH-HHHHHHHHhcccCCccchhhhcCC
Q 009442 173 MQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALP-ALTTYYWRMKMPETGRYTAIIEGN 251 (534)
Q Consensus 173 ~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~-~~~~~~~~~~~~esp~~~~~~~~~ 251 (534)
+..+|..+++.+++.+. +..+||+.+++.++. .+..++...++||++++. .+++
T Consensus 149 ~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 203 (398)
T TIGR00895 149 GYPIGAAVGGFLAGWLI-----------------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL--VSKR 203 (398)
T ss_pred HHHHHHHHHHHHHHHHh-----------------------hcccceeehhhhhhHHHHHHHHHHHhCCCCChHH--HhcC
Confidence 99999999999998887 456799999987544 444555566789988763 2222
Q ss_pred hHHHHHHHHhhhccccchhhhhhhh--hcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccccc
Q 009442 252 AKQAASDMGRVLDIEIDEEHDKLSQ--FKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLV 329 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 329 (534)
+++..+..++......+++.+..++ .+++..++..+....++..+..+...+..+.....++....+.|.+..+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 283 (398)
T TIGR00895 204 PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283 (398)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2222222222111110000000000 00001111111111111112223333333344455555566666555555655
Q ss_pred ccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 009442 330 HKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLY 409 (534)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (534)
+...+. ......++.+++.++.+++.||++||+.... ..+..+....+... . .+.+......
T Consensus 284 ~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~~~~~~~~~~ 345 (398)
T TIGR00895 284 LSLAAT------------GGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGST-L----FSPTLLLLLG 345 (398)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH-h----hCHHHHHHHH
Confidence 443322 5667778889999999999999999854443 33333333333221 1 1222222222
Q ss_pred HHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhh
Q 009442 410 GLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSY 462 (534)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~ 462 (534)
+..+++.....+...++..|.+|++.|+++.|+.+....+|..++|.+.|.+
T Consensus 346 -~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 346 -AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 2222222333456678889999999999999999999999999999998865
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.36 Aligned_cols=379 Identities=11% Similarity=0.030 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchh
Q 009442 21 HVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRK 100 (534)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr 100 (534)
.|......+.+.+..... ..+++++|.+++++ ++|..+.+++.+.+.+++.+++++.|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~------------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r 74 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQAS------------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER 74 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch
Confidence 344444444544443332 66789999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHH
Q 009442 101 KVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180 (534)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i 180 (534)
+++..+..+++++.++++++ ++++.++++|+++|++.+...+....++.|++| ++|+++++.+..+..+|..+
T Consensus 75 ~~l~~~~~l~~~~~~~~~~a------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 75 RSVAISLLLIAVGALMRELY------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL 147 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHC------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999 459999999999999999999999999999997 78999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcc-cCCccchhhhcCChHHHHHHH
Q 009442 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKM-PETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~ 259 (534)
++.+++++... ..+||..+.+.++..++.++..+.. ++.|+. ++ +
T Consensus 148 g~~~~~~l~~~----------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~------ 193 (393)
T PRK09705 148 GAAITPWLVQH----------------------SETWYQTLAWWALPAVVALFAWWWQSAREVAS-----SH-K------ 193 (393)
T ss_pred HHHHHHHHHHh----------------------cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----cc-C------
Confidence 99999887631 1369998876555544433333222 111110 00 0
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALR 339 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 339 (534)
++ ....+.++++ ..+...+..+.....++....+.|.++.+.|.+....+.
T Consensus 194 ------------~~------~~~~~~l~~~-------~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~---- 244 (393)
T PRK09705 194 ------------TT------TTPVRVVFTP-------RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGS---- 244 (393)
T ss_pred ------------CC------cCCcccccCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhH----
Confidence 00 0001111111 122233333344456666777778777777766655444
Q ss_pred hHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcC
Q 009442 340 EVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFG 419 (534)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (534)
...+..++.++++++.+++.||++||+....+..+..++...+..... +... ... .+ .+.+...
T Consensus 245 --------~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~-~~~-~l-~g~g~g~ 308 (393)
T PRK09705 245 --------LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-----QLPV-LWA-MV-CGLGLGG 308 (393)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-----hHHH-HHH-HH-HHHhccc
Confidence 677788899999999999999999999888887776666554433211 1111 111 11 1222223
Q ss_pred CcceeeecccccC-ChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCCC
Q 009442 420 PNSTTFVLPAELF-PTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETKG 497 (534)
Q Consensus 420 ~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 497 (534)
..+.......+.. |++.+++++|+.+...+++..++|.+.+++.+..+ ++...|.+.++.+++..++.. +.||+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 309 AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3344444455655 46789999999999999999999999999998543 567777777777776666655 4477766
Q ss_pred CCc
Q 009442 498 RSL 500 (534)
Q Consensus 498 ~~~ 500 (534)
+.+
T Consensus 387 ~~~ 389 (393)
T PRK09705 387 QLW 389 (393)
T ss_pred chh
Confidence 554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=267.26 Aligned_cols=377 Identities=15% Similarity=0.040 Sum_probs=258.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhH
Q 009442 23 TAIVIAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKK 101 (534)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~ 101 (534)
+.+....+..+...++.....+.+|. +.+++ +.|..+.|++.+++.+++.+++++.|+++||+|||+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~ 82 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL------------GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK 82 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc
Confidence 34455666667777777778888886 56666 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC--ccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSS--ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~--~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
+++.+.++.+++.+.+.++.... ...+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 162 (399)
T PRK05122 83 AVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA 162 (399)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH
Confidence 99999999988877666542100 0024678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHH
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 259 (534)
+++.+++.+. +..+||..+++.++..++..+.....|+++. ++++++ ..
T Consensus 163 ~g~~l~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~ 211 (399)
T PRK05122 163 IGAPLGVLLY-----------------------HWGGLAGLGLLIMLLALLGLLLARPRPAVPP-----VKGERL---PF 211 (399)
T ss_pred HHHHHHHHHH-----------------------HcccHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCccch---hH
Confidence 9999999887 3567999988766655544433332333211 000000 00
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALR 339 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 339 (534)
.+.+++ ..+ ... ........+.....+.+.+..+.++. ..+.
T Consensus 212 -----------------------~~~~~~-~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---- 253 (399)
T PRK05122 212 -----------------------RRVLGR-VWP----YGM----GLALASIGFGTIATFITLYYAARGWD--GAAL---- 253 (399)
T ss_pred -----------------------HHHHHH-HHH----HHH----HHHHHHHHHHHHHHHHHHHHHHcccc--cchH----
Confidence 000000 000 000 11111222233333444444443331 1111
Q ss_pred hHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcC
Q 009442 340 EVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFG 419 (534)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (534)
......++.+++.++.+++.||+++|+.+..+..+..++.+.+... ++.+... +..+..+++...
T Consensus 254 --------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~l~G~~~~~ 318 (399)
T PRK05122 254 --------ALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------PSPWMAL-IGAALTGFGFSL 318 (399)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHH-HHHHHHHHhHHH
Confidence 3445566778889999999999999998888877777766555542 1222222 222222222222
Q ss_pred CcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCCCC
Q 009442 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKGR 498 (534)
Q Consensus 420 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (534)
..+.......|..|++.|+++.|+.+....+|..+++.+.+.+.+ ..|++..+.+.+++.+++.+..+++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 319 VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---WFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334444556788999999999999999999999999999998877 4578889988888888887777766554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=278.18 Aligned_cols=401 Identities=11% Similarity=0.049 Sum_probs=262.6
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD 95 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d 95 (534)
+.+.++|.++..+.+.......+...++...|.+.+++ +.+..+.+++.+.+.++..++.++.|+++|
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d 79 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIF------------QATYSETAWISSIMLAVLYAGGPISSILVN 79 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHh------------CcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44566787777777766655556667788899999988 899999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHH-HHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHH
Q 009442 96 KLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCF-FRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 174 (534)
Q Consensus 96 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 174 (534)
|+|||++++.+.++.+++.++++++ ++++.+++ .|++.|++.+...+...+++.++++ ++|+++.++...+.
T Consensus 80 r~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~ 152 (455)
T TIGR00892 80 RFGCRPVVIAGGLLASLGMILASFS------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGS 152 (455)
T ss_pred HcCchHHHHhhHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcc
Confidence 9999999999999999999999888 44777764 5799999999877777888899996 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcc-cCCccchhhhcCChH
Q 009442 175 GVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKM-PETGRYTAIIEGNAK 253 (534)
Q Consensus 175 ~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~-~esp~~~~~~~~~~~ 253 (534)
.+|..+++.+++.+.. ..|||+.|++.++..++..+..+++ ++.+.. +..+.
T Consensus 153 ~~g~~~~~~l~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~ 205 (455)
T TIGR00892 153 PVFLSTLAPLNQYLFE-----------------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ----RVSKS 205 (455)
T ss_pred cHHHHHHHHHHHHHHH-----------------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCccc----ccccc
Confidence 9999999999988873 4569999999777666544443333 322211 00000
Q ss_pred HHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccc
Q 009442 254 QAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAP 333 (534)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 333 (534)
+..+. .......++.+.... .++..+....+..+++ .++......+.....++....+.+.+.++.+++....
T Consensus 206 ~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~ 278 (455)
T TIGR00892 206 KSKEG---LPPDGSTKKLSKKST--AEKINRFLDFSLFTHR--GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEA 278 (455)
T ss_pred ccccc---CCCCCccccccccch--hhhhhhhcchHHhcCc--hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHH
Confidence 00000 000000000000000 0000111111111111 2333333334444455555556666666666654433
Q ss_pred ccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh--hhHHHHHHH--HHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 009442 334 QVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI--GRFIIQLVG--FFMMSLFMLIIGIKYDYLKNDNKWLFATLY 409 (534)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (534)
+. ...+..++.++++++.+++.||. ++|+...+. .++.+++.+..... .+.+ .+.+.
T Consensus 279 g~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~~~-~~~i~ 339 (455)
T TIGR00892 279 AF------------LLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA------GDYT-GLVIY 339 (455)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh------chHH-HHHHH
Confidence 32 56667788888899999999973 333333332 22222222222221 2223 23333
Q ss_pred HHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 410 GLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
.+..++......+...++..|.+|++.+++++|+.+....+|.+++|.+.+.+.+..+ +|...|.+.+++.+++.+..
T Consensus 340 ~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 340 CIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHHHH
Confidence 3333333334445566778899999999999999999999999999999999887433 57888888777776665543
Q ss_pred H
Q 009442 490 F 490 (534)
Q Consensus 490 ~ 490 (534)
.
T Consensus 418 ~ 418 (455)
T TIGR00892 418 A 418 (455)
T ss_pred H
Confidence 3
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=270.17 Aligned_cols=390 Identities=15% Similarity=0.152 Sum_probs=264.0
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMV 111 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 111 (534)
++...+++..++...|.+.+++ +++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 70 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDL------------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWG 70 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhh------------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHH
Confidence 3566778888999999999988 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 112 ICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKI 191 (534)
Q Consensus 112 i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~ 191 (534)
++.++++++ ++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+.
T Consensus 71 ~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-- 142 (399)
T TIGR00893 71 VFTGLQAFA------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL-- 142 (399)
T ss_pred HHHHHHHHH------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--
Confidence 999999998 459999999999999999999999999999999999999999999999999999999999876
Q ss_pred HhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhccccchh
Q 009442 192 FLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEE 270 (534)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (534)
+..+||+.|++.++..++..+ ..+..||+|+. .+..+++++....++.. .+.+
T Consensus 143 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~-- 196 (399)
T TIGR00893 143 ---------------------IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK--AKWLTEEEKYIVVGGLL-AEQQ-- 196 (399)
T ss_pred ---------------------HhCCchHHHHHHHHHHHHHHHHhhheecCCCCc--cccCCHHHHhhcchhhc-cccc--
Confidence 355799999987776665443 44456776542 11111111111111000 0000
Q ss_pred hhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHH
Q 009442 271 HDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMF 349 (534)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 349 (534)
.++. ++..+...++...+ +.++......+...........+.+.++.+ .+.++...+. ..
T Consensus 197 ~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 257 (399)
T TIGR00893 197 GKGP----STPKKYQIKELLKD---RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGF------------MA 257 (399)
T ss_pred cccc----cCCCccchHHHhcC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhH------------HH
Confidence 0000 00011111111111 123334444444445555555666666543 3444333222 56
Q ss_pred HHHHhhcchhHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecc
Q 009442 350 VVALLGTFPGYWFTVFLIEKIGRFIIQ-LVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLP 428 (534)
Q Consensus 350 ~~~~~~~~~~~~~~g~l~d~~gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
....++.+++.++.+++.||++||+.. ........++.+.......................... ...+..+..+++.
T Consensus 258 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 336 (399)
T TIGR00893 258 SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGF-FGLGAGAIGWALI 336 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-hchhhhhHHHHHH
Confidence 667788889999999999999998611 11111111111111110000000112222222222222 2223567788899
Q ss_pred cccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc-hhHHHHHHHHHHHHHHHHHH
Q 009442 429 AELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-IQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 429 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 490 (534)
.|.+|++.|+++.|+.+...++|..++|.+.+.+.+. .+ +...+.+.+++.+++.+..+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 337 SDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999873 34 78888888887777766654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=266.61 Aligned_cols=377 Identities=13% Similarity=0.102 Sum_probs=270.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccch
Q 009442 20 YHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGR 99 (534)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Gr 99 (534)
+++++...+.++.+..+.+....+..+|.+.+++ ++|..+.+++.+.+.+++.+++++.|++.||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~ 71 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF------------NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPL 71 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4567777888889999999999999999999988 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 100 KKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 100 r~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
|+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+....++.|++|+++|+++.+.......+|..
T Consensus 72 r~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 145 (394)
T PRK03699 72 KRQLIFGFALMILAVAGLMFS------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM 145 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHc------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 55899999999999999998899999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHH
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 259 (534)
+++.+.+.+.. ...+||+.|.+.+++.++..++.++ .+.|+. . ++++++
T Consensus 146 ~~~~~~~~l~~----------------------~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~-~~~~~~----- 194 (394)
T PRK03699 146 IFPIIAAYLLA----------------------RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--G-KHAPKA----- 194 (394)
T ss_pred HHHHHHHHHHh----------------------ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--c-ccCccc-----
Confidence 99988877652 2457999999877666554443332 222221 0 000000
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNAL 338 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 338 (534)
+.+. . +... + +.++...+..++....++....+.|.++++ .|+++.+.+.
T Consensus 195 ----------~~~~--------~----~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~--- 245 (394)
T PRK03699 195 ----------DKPV--------A----KEKW-G---IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGN--- 245 (394)
T ss_pred ----------cCcc--------c----cccC-C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH---
Confidence 0000 0 0000 0 112333333444444556666778888754 4665554433
Q ss_pred hhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 339 REVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
......++.++++++.++++||++||+.+.....+..+.+.++... ++.+.... ..+..++...
T Consensus 246 ---------~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~G~~~~ 309 (394)
T PRK03699 246 ---------LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT------DDPSHLLY-AILGLGFFSS 309 (394)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc------CCchHHHH-HHHHHHHHHH
Confidence 5566667888999999999999999998887766655544443321 12222222 2222223222
Q ss_pred CCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
+..+...++..|..|. .+++..+.......+|..++|.+.+.+.+ ..|+...+++.+++.+++.+.+..+++
T Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 310 AIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVA---HFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444555666654 45777888889999999999999999987 447788888777777777666655543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=269.71 Aligned_cols=370 Identities=15% Similarity=0.111 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
.+....+..+..+. ...+++..|.+.+++ +++..+.|++.+++.++..+++++.|+++||+|||+++
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~ 71 (377)
T TIGR00890 5 VLVGTVIMCFTSGY-VYTWTLLAPPLGRYF------------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA 71 (377)
T ss_pred EeHHHHHHHHHhhH-HhhhhhHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh
Confidence 33333444444443 567788999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
..+.++.+++.++++++ ++++.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 144 (377)
T TIGR00890 72 MLGGILYGLGFTFYAIA------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP 144 (377)
T ss_pred HHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH
Confidence 99999999999999998 569999999999999999888888888999997 67999999999999999887666
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHHHHHHhh
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAASDMGRV 262 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~ 262 (534)
+...+. +..+||+.|++.++..++..+. .++++|+|+. ..+++.+.
T Consensus 145 ~~~~~~-----------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------- 191 (377)
T TIGR00890 145 LITSVI-----------------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ--LIKTNIEV-------- 191 (377)
T ss_pred HHHHHH-----------------------hcccHHHHHHHHHHHHHHHHHHHHHheecCchh--ccccCccc--------
Confidence 665554 3457999999977776665443 3445554321 00000000
Q ss_pred hccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHh
Q 009442 263 LDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVF 342 (534)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 342 (534)
+ +.+ .+.++.++++ . .+......+...........+.+.+.++.+.+....
T Consensus 192 -----~-~~~-------~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 242 (377)
T TIGR00890 192 -----S-VKD-------YTVWEMLRTP----Q---FWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFL--------- 242 (377)
T ss_pred -----c-hhh-------hhHHHHHcCc----c---HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHH---------
Confidence 0 000 0000111111 1 111122222222222222223333444444332221
Q ss_pred hhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 343 ETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
........++.++++++.+++.||++||+.+..+..+..++.+.+..... ...+...... +..++......+
T Consensus 243 ---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~g~~~g~~~~ 314 (377)
T TIGR00890 243 ---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM----LNDVLFLATV-ALVFFTWGGTIS 314 (377)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc----chhHHHHHHH-HHHHHHhccchh
Confidence 22566677888899999999999999999988888877777665544321 1112121112 222222223334
Q ss_pred eeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 423 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
....+..|.+|+++|+++.|+.+....+|..++|.+.+.+.+ ..||+..|.+.+++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT---EIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---hhchhhHHHHHHHHHHHhc
Confidence 555678899999999999999999999999999999999887 4578888888877776654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=270.94 Aligned_cols=382 Identities=14% Similarity=0.116 Sum_probs=267.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccch
Q 009442 20 YHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGR 99 (534)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Gr 99 (534)
++|.++..++++.++..+|.++.+..+|.+.+++ |.+..+.+|+.+.+.++..++++++|+++||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l------------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Gr 70 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL------------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGF 70 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3577888899999999999999999999999998 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhcc-ccchhhhHHHHHHHHHHHHH
Q 009442 100 KKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 100 r~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~ 178 (534)
|++++.+.++..+++++++++ +|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|.
T Consensus 71 k~~l~~~~~~~~~~~~~~~~a------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~ 144 (495)
T PRK14995 71 KRLLMLGGTLFGLASLAAAFS------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA 144 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 55999999999999999998888787787766 67899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCChHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGNAKQAAS 257 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~~ 257 (534)
.+||.+++++. ++.+||+.|++.....++. ++..+++||+|+. .+++.+....
T Consensus 145 ~~gp~lgg~l~-----------------------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~---~~~~~d~~g~ 198 (495)
T PRK14995 145 AFGPLVGGILL-----------------------EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR---RDQPLNLGHA 198 (495)
T ss_pred HHHHHHHHHhh-----------------------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCCChHhH
Confidence 99999999987 4668999999976655554 3444567776532 1111111100
Q ss_pred ------------HHHhhhccccchhhhh-------------hhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHH
Q 009442 258 ------------DMGRVLDIEIDEEHDK-------------LSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAF 312 (534)
Q Consensus 258 ------------~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (534)
.+....+ +....... .-..+.+...+.+..+.++++ .+.......+.....+
T Consensus 199 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~--~~~~~~~~~~~~~~~~ 275 (495)
T PRK14995 199 LMLIVAILLLVYSAKTALK-GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHR--IILSGVVMAMTAMITL 275 (495)
T ss_pred HHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCc--ccHHHHHHHHHHHHHH
Confidence 0000000 00000000 000011112223222333322 1222333333344445
Q ss_pred HHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009442 313 YSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIG 391 (534)
Q Consensus 313 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~ 391 (534)
++...+.|.+++. .|+++.+.+. ...+..++..++.++.|++.||+|+|+.+..+..+..++.+.+.
T Consensus 276 ~~~~~~~~~~lq~v~g~s~~~ag~------------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 276 VGFELLMAQELQFVHGLSPLEAGM------------FMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 5555566666654 4666554443 67777888899999999999999999988888877777666554
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 392 IKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
.... ..+.+.... ..+..+++.....+.......+..|++.++.+.++.++...+|+.+|+.+.+.+.+
T Consensus 344 ~~~~---~~~~~~~~~-~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 344 MTDF---STQQWQAWG-LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HhcC---CCchHHHHH-HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 012222222 22222222222334445566788999999999999999999999999988887754
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.67 Aligned_cols=368 Identities=12% Similarity=0.126 Sum_probs=250.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
.+..|+.+..+.++.+..........+.+|.+.+++ +.+..+.++..+++.++..+++++.|+++||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~ 82 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDL------------GISEGVAGQSVTVTAFVAMFASLFITQTIQAT 82 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444677767776666666666666667788898888 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|
T Consensus 83 grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g 156 (394)
T PRK10213 83 DRRYVVILFAVLLTLSCLLVSFA------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIA 156 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~ 256 (534)
.++++.+++.+. +.++||+.|++.++..++..+. ....||+|+. . ++. .+
T Consensus 157 ~~ig~~l~~~l~-----------------------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~--~-~~~-~~-- 207 (394)
T PRK10213 157 LVIAAPLGSFLG-----------------------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE--P-SHQ-KQ-- 207 (394)
T ss_pred HHHHHHHHHHHH-----------------------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--c-ccc-hh--
Confidence 999999999987 4567999999877665554433 3346765431 0 000 00
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh-hhccccccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLT-QKDIFPAMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 335 (534)
+..+.++++. ++...+..+......+....+ .|.+.++.|+++...+.
T Consensus 208 ------------------------~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~ 256 (394)
T PRK10213 208 ------------------------NTFRLLQRPG-------VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTL 256 (394)
T ss_pred ------------------------HHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 0001111111 111112222222222232333 35555555665543332
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
......++.+++.++.+++.||.+++ .+..+..+..++.+.+.... ++.+.... ..+..++
T Consensus 257 ------------~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~-~~~l~G~ 317 (394)
T PRK10213 257 ------------VLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWG-----SDKIVATG-VAIIWGL 317 (394)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHh-----hhHHHHHH-HHHHHHH
Confidence 56667778899999999999996544 33333333333322222211 12232222 2232333
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
+.....+...+++.+..|+ .++++.++.....++|..+|+.+.|.+.+ ..|+...+...+++.++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~---~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 318 TFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALD---NIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhhHHHHHHHHHHHHH
Confidence 3323334444466777774 45677777778888999999999999987 4466666666655544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=239.59 Aligned_cols=392 Identities=14% Similarity=0.173 Sum_probs=298.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD 95 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d 95 (534)
..++.+++.+.+..+..........+++++.+.+.+++ ++|+.|.+++.++..+...+..++.|.+.|
T Consensus 7 ~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~------------~LS~~q~~ll~aiPil~GallRl~~g~l~d 74 (417)
T COG2223 7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDF------------GLSEGQKGLLVAIPILVGALLRLPYGFLTD 74 (417)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------------CCCHHHHHHHHHHHHHHhHHHHHHHHhhhc
Confidence 34555677778888888888888889999999999888 999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHH
Q 009442 96 KLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 175 (534)
Q Consensus 96 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 175 (534)
|+|.|++..++.++..+-++..+++..+ .+++++++.+++.|++ |+.+.+...++++|+|||++|.++|+.. ..+
T Consensus 75 rfGgR~~~~~s~~l~~IP~~~~~~a~~~---~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN 149 (417)
T COG2223 75 RFGGRKWTILSMLLLLIPCLGLAFAVTY---PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGN 149 (417)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHccC---CchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-ccc
Confidence 9999999999999999999999998654 4467999999999997 5568899999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHH
Q 009442 176 VGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQ 254 (534)
Q Consensus 176 lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~ 254 (534)
+|..+...++..+....+. ..||....+..+..++ .+..++...|.|.. ....+ +.
T Consensus 150 ~G~av~q~~~P~v~~~~g~--------------------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~--r~~~~-~~ 206 (417)
T COG2223 150 LGVAVAQLVAPLVAVAFGF--------------------LAWRNVAGIYVVALAIAAVLAWLGMNDVPEH--RASVK-PQ 206 (417)
T ss_pred ccHHHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHhCCChhh--hcccc-cc
Confidence 9999999999988853321 0299988887776666 44555566666543 11111 00
Q ss_pred HHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-cccccccc
Q 009442 255 AASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAP 333 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 333 (534)
....+ +....+ +..|.+++.++.....+-+...+.|.++++ +|.++..+
T Consensus 207 ~~~~~---------------------------~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~A 256 (417)
T COG2223 207 LPAQL---------------------------KAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTA 256 (417)
T ss_pred chhHH---------------------------HHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 00000 111111 125667777777777777777777777754 56666654
Q ss_pred ccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHH
Q 009442 334 QVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLT 412 (534)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 412 (534)
+. ......+.+.+.++++|+++||+|.++.+......++++..++......... .+.+.....+...
T Consensus 257 g~------------~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 257 GL------------IAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HH------------HHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence 43 5666667777889999999999999999999999999988888876432111 1233333333333
Q ss_pred HHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 413 FFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 413 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..+.+.+. ...+.++..++|.+ .|.+.|++..++.+|++.-|...+...+..+ .+...|+++..+.+++.+..+.+
T Consensus 325 ~~~~G~Gn-Gsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 325 FVFAGLGN-GSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHhccCc-chheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 45667888888764 5999999999999999999999999988655 68889999999999888887765
Q ss_pred c
Q 009442 493 T 493 (534)
Q Consensus 493 ~ 493 (534)
.
T Consensus 401 y 401 (417)
T COG2223 401 Y 401 (417)
T ss_pred H
Confidence 3
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=249.01 Aligned_cols=400 Identities=13% Similarity=0.106 Sum_probs=271.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhh-hcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGR-LYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
++-.++.+.+..++++........++++.+.+.+ ++ ++|.+|.+++.+++.+++.++.++.|++.||
T Consensus 29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~------------~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr 96 (462)
T PRK15034 29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGF------------NFTTDQLFLLTALPSVSGALLRVPYSFMVPI 96 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888999999999998876 67 9999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV 176 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l 176 (534)
+|.|+++.++.+++++.+++.+++.+. ..++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~~-~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~ 174 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQN-PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL 174 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence 999999999999999999999986110 014599999999999998 678899999999999999999999999877778
Q ss_pred HHHHHHHHHHHHHHH--HhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHh-cccCCccchhhhcCChH
Q 009442 177 GIIFAGLVSMILSKI--FLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRM-KMPETGRYTAIIEGNAK 253 (534)
Q Consensus 177 G~~i~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~-~~~esp~~~~~~~~~~~ 253 (534)
|..+++++...+... +......... ....+..+||.+.++.+++.++..++.+ +.++.|. .+.+.+
T Consensus 175 G~~l~~~l~p~~i~~~l~~~~G~~~~~-------~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----~~~~~~ 243 (462)
T PRK15034 175 GVSVMQLVAPLVIFVPVFAFLGVNGVP-------QADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----SRASIA 243 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----cccCHH
Confidence 887777766554421 1100000000 0001245699988887666655544444 3443221 011111
Q ss_pred HHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccc
Q 009442 254 QAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAP 333 (534)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 333 (534)
+. ....|. +..|.+++.+++....+.+...+.|.+.++ .+....
T Consensus 244 ~~--------------------------------~~vlk~--~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~- 287 (462)
T PRK15034 244 DQ--------------------------------LPVLQR--LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN- 287 (462)
T ss_pred HH--------------------------------HHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH-
Confidence 00 001111 124555555555555555566566666544 121100
Q ss_pred ccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 009442 334 QVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTF 413 (534)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (534)
......+..+...+.++++|+++||+|+++++.++.+.+.++...+..........+.+.....+....
T Consensus 288 -----------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~ 356 (462)
T PRK15034 288 -----------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLF 356 (462)
T ss_pred -----------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 001233445677888899999999999999999888877776644333322111112233333332222
Q ss_pred HHhhcCCcceeeecccccCCh---------------------hhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchh
Q 009442 414 FFANFGPNSTTFVLPAELFPT---------------------RVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQ 472 (534)
Q Consensus 414 ~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (534)
...+.+. ...+-++.+.+|+ ++-|.+.|++...+.+|+++.|.+.+...+..+ ++.
T Consensus 357 ~~~G~gn-gsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~ 433 (462)
T PRK15034 357 LTAGLGS-GSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPV 433 (462)
T ss_pred HHhcccc-hHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcH
Confidence 3333332 3455667777774 256889999999999999999999998877554 688
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 009442 473 HAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~ 492 (534)
..|+.+.+..++|.++.++.
T Consensus 434 ~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 434 GAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888887754
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=260.36 Aligned_cols=382 Identities=13% Similarity=0.062 Sum_probs=260.3
Q ss_pred HHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHH
Q 009442 33 FTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVI 112 (534)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 112 (534)
+...+......+.+|.+.+++ +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMM------------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL 94 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence 334444556677788887777 77889999999999999999999999999999999999888888777
Q ss_pred HHHHHHh---ccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 113 CAICSGL---SFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 113 ~~~~~~~---~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
+.+..+. ... ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+.
T Consensus 95 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 95 GFIGLALNAFLPE----PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 7665542 212 458889999999999988888888999999999999999999999999999999999999887
Q ss_pred HHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccch
Q 009442 190 KIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDE 269 (534)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (534)
. ..+|++.|++.++..++..+..+.+||+++. . +++ ++..++..
T Consensus 171 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~~-~~~~~~~~--------- 214 (417)
T PRK10489 171 A-----------------------AGGVAWNYGLAAAGTFITLLPLLRLPALPPP--P-QPR-EHPLRSLL--------- 214 (417)
T ss_pred H-----------------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC--C-ccc-ccchHHHH---------
Confidence 3 3459999988777766666666677776432 1 000 00000000
Q ss_pred hhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHH
Q 009442 270 EHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAM 348 (534)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 348 (534)
+ ..+..++++..+ ...... +... .......+.|.+.++ .+.++...+. .
T Consensus 215 --~--------~~~~~~~~~~~~----~~~~~~---~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~------------~ 264 (417)
T PRK10489 215 --A--------GFRFLLASPVVG----GIALLG---GLLT-MASAVRVLYPALADEVWQMGAAQIGL------------L 264 (417)
T ss_pred --H--------HHHHHHcChHHH----HHHHHH---HHHH-HHHhHHHhhHHHHHhccCCChhHhHH------------H
Confidence 0 000011111111 111111 1111 122334455666655 4554433222 5
Q ss_pred HHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecc
Q 009442 349 FVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLP 428 (534)
Q Consensus 349 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
.....++.+++.++.+++.||.++++.+..+..+..++.+.+... +++....+..+..+++.....+...+++
T Consensus 265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 337 (417)
T PRK10489 265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------PMWILAVLCLALFGYLSAISSLLQYTLL 337 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888999999999999877777777777666665554432 2222222222222222222234455778
Q ss_pred cccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHH-HHHHHHhhccCCCCCccccccc
Q 009442 429 AELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNML-GFCCTFLVTETKGRSLEEISGE 506 (534)
Q Consensus 429 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 506 (534)
.|..|++.|++++|+.+....+|..++|.+.|.+.+ ..++...+...+++.++ +.+....++++|+++++|++++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA---MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 899999999999999999999999999999999988 34666666666655544 4444456788888887776654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-31 Score=255.06 Aligned_cols=368 Identities=16% Similarity=0.141 Sum_probs=252.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG 104 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~ 104 (534)
+....++.+..+.......+.+|.+.+++ |.+..+.|++.+++.++..+++++.|+++||+|||+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 72 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDV------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILL 72 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHc------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 44555667777888888899999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 009442 105 ITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~ 184 (534)
.+.++.+++.++++++ ++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+
T Consensus 73 ~~~~~~~~~~~l~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 73 FLVALCVIGNAMFTLS------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 9999999999999998 5599999999999999998888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhh
Q 009442 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVL 263 (534)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 263 (534)
++.+. +..+||+.|++.++..++.. ...+.+||.++. .+.+.++ .
T Consensus 147 ~~~l~-----------------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~---~----- 192 (382)
T PRK10091 147 GTYLS-----------------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE---AKGGLRE---Q----- 192 (382)
T ss_pred HHHHh-----------------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc---cccCHHH---H-----
Confidence 98876 35679999999777655543 334457775321 0000000 0
Q ss_pred ccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHh
Q 009442 264 DIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVF 342 (534)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 342 (534)
. +.++++. .+......+......+....+.+.++. ..|+++...+.
T Consensus 193 ----------~---------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------- 239 (382)
T PRK10091 193 ----------F---------HFLRSPA-------PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTF------- 239 (382)
T ss_pred ----------H---------HHhcChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-------
Confidence 0 0001110 111111111111122222222233333 34554443322
Q ss_pred hhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 343 ETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
......++.+++.++.+++.||+++|+.+..+..+.+++.+.+..... ..+.......+.. .+..+..+
T Consensus 240 -----~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~-~g~~~~~~ 308 (382)
T PRK10091 240 -----IMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG-----MKTASLIFAFICC-AGLFALSA 308 (382)
T ss_pred -----HHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHH-HHHHhhhH
Confidence 667777889999999999999999999888887777766654443211 2222222222111 11111122
Q ss_pred -eeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 423 -TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 423 -~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
.......+..|++.++.+ ..+....+|..+||.+.+.+.+.. .+|+..+.+.++++++...+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHHHHH
Confidence 222233455555555554 346677899999999999988743 378888888777777666655544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=260.97 Aligned_cols=379 Identities=14% Similarity=0.112 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
.+..++++.+...++...+++..|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+|||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 78 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSL------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF 78 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 345666778888899999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
+.+.++.+++.++++++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 152 (471)
T PRK10504 79 FTAIVLFTLGSLFCALS------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA 152 (471)
T ss_pred HHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999988887 448999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHHHHHH--
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAASDMG-- 260 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~-- 260 (534)
+++.+. +..+||+.|++.....++..+. ....|+.+.. +++.+.......
T Consensus 153 ~~g~l~-----------------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~ 205 (471)
T PRK10504 153 LGGLLV-----------------------EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQ----TRRFDLSGFLLLAV 205 (471)
T ss_pred HHHHHH-----------------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCcccc----CCCCChHHHHHHHH
Confidence 999887 3457999999876655554433 3344544321 111111100000
Q ss_pred -----h--hhccccc-hhhhhh--------------hhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 009442 261 -----R--VLDIEID-EEHDKL--------------SQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLT 318 (534)
Q Consensus 261 -----~--~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (534)
. ..+.+.. ...... ...+++...+....+.++++. +.......++....+.....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~~~~~~~~~~~~~ 283 (471)
T PRK10504 206 GMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRT--FSLGLAGSFAGRIGSGMLPFM 283 (471)
T ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccc--hHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 000000 000001111221222222221 222222222222333333444
Q ss_pred hhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009442 319 QKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYL 397 (534)
Q Consensus 319 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (534)
.|.+++. .|.++...+ .......++.+++.++.+++.||+|||+.+..+..+..+...++.....
T Consensus 284 ~~~~~~~~~g~~~~~~g------------~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-- 349 (471)
T PRK10504 284 TPVFLQIGLGFSPFHAG------------LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL-- 349 (471)
T ss_pred HHHHHHHHcCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc--
Confidence 5555543 344433222 2556666677777889999999999999998888877776665554321
Q ss_pred ccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccc
Q 009442 398 KNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLD 465 (534)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 465 (534)
........+..+..+.+.....+....+..+.+|++.++.++|+.++...+|..+|+.+.+.+.+.
T Consensus 350 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 350 --LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121111111111111211122334456677889999999999999999999999999998887653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=260.92 Aligned_cols=410 Identities=13% Similarity=0.099 Sum_probs=263.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
+.++..+..+.+.......++..+....|.+.+ + |++..+.+++.+++.++..+++++.|+++||+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~------------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g 89 (438)
T TIGR00712 23 RLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-Q------------GFSKGELGFALSAISIAYGFSKFIMGSVSDRSN 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-c------------CCCHhHhHHHHHHHHHHHHHhhhccchhhhccC
Confidence 345666666677777777777777878887764 4 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
||+++..+.++.+++.+++++.++. .++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+..+|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~ 167 (438)
T TIGR00712 90 PRVFLPAGLILSAAVMLLMGFVPWA--TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG 167 (438)
T ss_pred CceehHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence 9999999999999998887765321 14477888999999999999889899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAAS 257 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~ 257 (534)
.+++.+.+.... ...+||..|++.++..++ .++..+++||+|+.. ..++.++..+
T Consensus 168 ~~~~~l~~~~~~----------------------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 223 (438)
T TIGR00712 168 GIPPLLVLLGMA----------------------WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC--GLPPIEEYRN 223 (438)
T ss_pred HHHHHHHHHHHH----------------------HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc--CCCCchhccc
Confidence 998887765442 234699999997777655 445556678876531 0000000000
Q ss_pred HHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccc
Q 009442 258 DMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVN 336 (534)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 336 (534)
+..++..++.+ .+.+..+.+.+...+. +.++...+..++.....+....+.|.++++ .|+++...+.
T Consensus 224 -------~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~- 291 (438)
T TIGR00712 224 -------DYPDDYNEKAE--QELTAKEIFMQYVLPN--KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSW- 291 (438)
T ss_pred -------ccccccccccc--cccchHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHH-
Confidence 00000000000 0000111111111111 123333333333344455666677777765 3555543332
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFML-IIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
...+..+..+++.++++++.||+++++....+..+..+..+ .+.+... .. .+.+.... ..+..++
T Consensus 292 -----------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~g~ 357 (438)
T TIGR00712 292 -----------AYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN-PA-GNPLVDMI-CMIVIGF 357 (438)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-CC-CchHHHHH-HHHHHHH
Confidence 56667778899999999999999643322222222211111 1111111 00 12222211 1122222
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhh-hHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh-hc
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGA-MIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL-VT 493 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 493 (534)
...+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.+ ..||...+.+..++.+++.+..++ ++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 358 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222356799999999999999999988875 689999999987 447888888888777777776664 46
Q ss_pred cCC
Q 009442 494 ETK 496 (534)
Q Consensus 494 ~~~ 496 (534)
|.|
T Consensus 435 ~~~ 437 (438)
T TIGR00712 435 GEK 437 (438)
T ss_pred hcc
Confidence 654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=252.04 Aligned_cols=371 Identities=16% Similarity=0.213 Sum_probs=273.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHH
Q 009442 62 HNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGF 141 (534)
Q Consensus 62 ~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 141 (534)
+.+.+++..+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.+ .+++.+++.|+++|+
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----IGFYLLLVLRFLQGL 140 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----hcchhhHHHHHHhHH
Confidence 4567999999999999999999999999999999999999999999999999999999876 446788999999999
Q ss_pred hccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHH
Q 009442 142 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL 221 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~ 221 (534)
+.|..+|+...+..+|.|++||++..++..++..+|.+++.++++++.+ ...||+.+|
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~----------------------s~~GW~sif 198 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE----------------------SSLGWPSIF 198 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----------------------cCCCCchHH
Confidence 9999999999999999999999999999999999999999999999983 247899999
Q ss_pred HHhhHHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHH
Q 009442 222 MLGALPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300 (534)
Q Consensus 222 ~~~~i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (534)
++.++.+++.. ++.++..|+|.. ++.-.+++.+.+.+-...+..++. .+.+.+++++. ..++.
T Consensus 199 Y~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k~~~~~~~~------~~vP~~~i~ts-------~~vwa 262 (466)
T KOG2532|consen 199 YVFGIVGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGKSEAHVKKK------PPVPYKAILTS-------PPVWA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhcccccccCCC------CCCCHHHHHcC-------HHHHH
Confidence 99888777654 444566788763 233333333333221111100000 11122222222 24677
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccc-cccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhh-------
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFPAM-GLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGR------- 372 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr------- 372 (534)
+.+..++....++....+.|.|+++. +++..+.+. ..++..+...+..+++|.++||..+
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~------------~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~ 330 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF------------LSALPFLAMAIVKFVAGQLSDRLTFRILSETT 330 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhccCchHh
Confidence 78888888889999999999999863 454444333 7788888899999999999998754
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh
Q 009442 373 --FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA 450 (534)
Q Consensus 373 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 450 (534)
|..-.++....+++++.+++... .+.+..++++.+...+.+. ....+........+++.+..+|+.+....+
T Consensus 331 ~rkifn~i~~~~~ai~l~~l~~~~~----~~~~~a~~~l~~~~~~~g~--~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~ 404 (466)
T KOG2532|consen 331 VRKIFNTIAFGGPAVFLLVLAFTSD----EHRLLAVILLTIAIGLSGF--NISGFYKNHQDIAPQHAGFVMGIINFVGAL 404 (466)
T ss_pred HHHHHHhHHHHHHHHHHHeeeecCC----CcchHHHHHHHHHHHHccc--chhhhHhhhhhccchHHHHHHHHHHHHHHH
Confidence 33444555555666666555432 2333344444443333322 222222222221566779999999999999
Q ss_pred hhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 451 GAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 451 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
.++++|.+.+.+........|+.+|++.+++.+++.++..+.
T Consensus 405 ~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 405 AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999853234589999999999999888665555
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=255.44 Aligned_cols=366 Identities=13% Similarity=0.076 Sum_probs=246.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 27 IAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
.+.++.+..........+.+|. +.+++ |+|..+.|++.+++.++..+++++.|+++||+|||++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~l------------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (392)
T PRK12382 19 RIAFAVFLTYMTVGLPLPVIPLFVHHDL------------GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ 86 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhc------------CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence 3344445555556666777775 46677 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---hccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHH
Q 009442 106 TLILMVICAICSG---LSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG 182 (534)
Q Consensus 106 ~~~~~~i~~~~~~---~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~ 182 (534)
+.++..++.+... +.+. ...++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPV-SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence 9888777655332 2211 01145889999999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhh
Q 009442 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRV 262 (534)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 262 (534)
.+++.+. ...|||..+.+..+..++........||.++. +++++
T Consensus 166 ~~~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------- 209 (392)
T PRK12382 166 PLGLLLH-----------------------SHFGFAALALTTMVLPLLAWAFNGTVRKVPAH-----AGERP-------- 209 (392)
T ss_pred HHHHHHH-----------------------hccChHHHHHHHHHHHHHHHHHHHhccCCCCC-----cccCc--------
Confidence 9998887 35579988776555444333332233332210 00000
Q ss_pred hccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHh
Q 009442 263 LDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVF 342 (534)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 342 (534)
+.++..+ ...+. .... +.....+.....+.+.++.+.++.. .+
T Consensus 210 ------------------~~~~~~~-~~~~~----~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 252 (392)
T PRK12382 210 ------------------SLWSVVG-LIWKP----GLGL----ALQGVGFAVIGTFVSLYFASKGWAM--AG-------- 252 (392)
T ss_pred ------------------hHHHHHH-HHHHh----HHHH----HHHHHHHhHHHHHHHHHHHhcCCch--hH--------
Confidence 0000000 00000 0101 1111222223333344444433321 11
Q ss_pred hhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 343 ETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+... .+.+...... +..+.+.....+
T Consensus 253 ----~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~l~g~~~~~~~~ 321 (392)
T PRK12382 253 ----FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------PTAWVALAGA-ALTGAGCSLIFP 321 (392)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------ccHHHHHHHH-HHHHHHHHhHHH
Confidence 13344556678888999999999999998888887777766655442 1222222222 222222222334
Q ss_pred eeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 423 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
...+...|.+|++.|+++.|+.+....+|..++|.+.+.+.+ ..||+..|.+.+++.+++.+..++.
T Consensus 322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT---SFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHHHhh
Confidence 455566788999999999999999999999999999999887 4578889998888888777766543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=261.73 Aligned_cols=379 Identities=21% Similarity=0.324 Sum_probs=273.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
..+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.+++ +|++.+++.|++.|++.++
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------PNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhccc
Confidence 4466778889999999999999999999999999999999999999999999999 5599999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
...+...++.|++++++|+.+..+ ......|..+++..++++.. +||+.+++..
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------------------------~Wr~~~~~~~ 241 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------------------------DWRWLFWIIS 241 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------------------------hHHHHHHHHH
Confidence 999999999999999999999999 66666666677777776662 5999999999
Q ss_pred HHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccc-----cchhhhhh---hhhc------ccCcccchhHHHh
Q 009442 226 LPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIE-----IDEEHDKL---SQFK------EVNKYPLLSREFF 291 (534)
Q Consensus 226 i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~------~~~~~~~~~~~~~ 291 (534)
++.++.++..++.||+|||+ ..+++.+++.+.+++..+.+ ..+..+.. +..+ +.....+++.+..
T Consensus 242 ~~~~~~~~~~~l~~Es~rwl-~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 320 (521)
T KOG0255|consen 242 IPSGLFLLLWFLPPESPRWL-LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRL 320 (521)
T ss_pred HHHHHHHHHHHccCcChHHH-HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHH
Confidence 99888777777778999997 45555566666666553321 11111111 0000 0122333444322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh
Q 009442 292 QRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG 371 (534)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 371 (534)
+ +..+...+.++.....+|+.......+-.+... .....+....++....+...|+.|
T Consensus 321 ~---~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~-------------------~~~~~~~~~~p~~~~~~~~~~~~g 378 (521)
T KOG0255|consen 321 R---YRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYL-------------------NFTLSGLVELPAYFRNGLLLPEFG 378 (521)
T ss_pred H---HHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHH-------------------HHHHHHHHHhhHHHHHHHHHHHhC
Confidence 2 235556666666777777766554432222111 333344477777788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhh
Q 009442 372 RFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 372 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 451 (534)
||.....+..+..++++..++.... ...+...++..+..++...+.. ..+.+..|++|+..|..+.+..+....++
T Consensus 379 R~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~ 454 (521)
T KOG0255|consen 379 RRPPLFLSLFLAGIGLLLFGWLPDD---LGGWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLG 454 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887552 1112334444444444444444 34788999999999999999999999999
Q ss_pred hhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH-HhhccCCCCCcccccccC
Q 009442 452 AMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT-FLVTETKGRSLEEISGED 507 (534)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 507 (534)
++++|.+....... .....+.+++....+..++. .++||++++.+.+..++.
T Consensus 455 ~i~ap~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~ 507 (521)
T KOG0255|consen 455 SILAPLFPLLLRQM----FPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA 507 (521)
T ss_pred HHHHHHHHHHHhhh----cccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence 99999987665542 11222233555666655555 678999998876554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-29 Score=245.58 Aligned_cols=360 Identities=14% Similarity=0.086 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
+..+...+.+.++.+...++...+.+.+|.+.+++ +.+..+.++..+.+.+++.+++++.|+++||+|
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g 76 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDF------------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG 76 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566666777777888888888889999999988 899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|+++|.+..++......+|.
T Consensus 77 ~r~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 150 (406)
T PRK15402 77 RRPVMLAGVAFFILTCLAILLA------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP 150 (406)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888 4589999999999999998888889999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAAS 257 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~ 257 (534)
.++|.+++.+. +..+||+.|++.++..++..+ ..+..||+++. ..++ +..+
T Consensus 151 ~~g~~i~~~l~-----------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~ 202 (406)
T PRK15402 151 LLGPLVGAALI-----------------------HVLPWRGMFVLFAALAALSFFGLWRAMPETAGR--VGEK---LSLK 202 (406)
T ss_pred HHHHHHHHHHH-----------------------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc--cccc---ccHH
Confidence 99999998876 345799999987776655444 33456776432 1110 0000
Q ss_pred HHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccc
Q 009442 258 DMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVN 336 (534)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 336 (534)
+.. + ..+..++++ .++......+......+....+.|.++. ..++++.+.+.
T Consensus 203 ~~~-----------~--------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~- 255 (406)
T PRK15402 203 ELG-----------R--------DYKLVLKNR-------RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGL- 255 (406)
T ss_pred HHH-----------H--------HHHHHHcCc-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH-
Confidence 000 0 000111111 1222222222222222233333444432 23444332211
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHh
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFA 416 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (534)
......++.+++.++.+++.||+++|+.+..+..+..++...+....... ...+....+..+..+++
T Consensus 256 -----------~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~g~g 322 (406)
T PRK15402 256 -----------LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS--SHAYLWLTAGLSLYAFG 322 (406)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHH
Confidence 33444567788899999999999999998888777776666665532111 11222222222222222
Q ss_pred hcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccc
Q 009442 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLD 465 (534)
Q Consensus 417 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 465 (534)
.....+........ .+++.|+++.++.+....++..+|+.+.+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 323 IGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 22122222223222 3447899999999999999999999999998774
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=244.92 Aligned_cols=350 Identities=17% Similarity=0.187 Sum_probs=239.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
..+.+..+........+.+..|.+.+++ +.+..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 75 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADL------------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL 75 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence 3334444556677788888999999988 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 106 TLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
+.++.+++.+++.++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.++
T Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 149 (385)
T TIGR00710 76 GLFIFALSSLGLALS------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG 149 (385)
T ss_pred HHHHHHHHHHHHHHH------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 55999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 186 MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
+.+. +..+||+.+++.++..++.. ...+..||+++. .++++.++..+.
T Consensus 150 ~~l~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 198 (385)
T TIGR00710 150 GYIL-----------------------VWLSWHAIFAFLSLAGILLSALIFFILPETLPY--EARIQISTYFET------ 198 (385)
T ss_pred HHHH-----------------------HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--cccCCHHHHHHH------
Confidence 9877 34579999998766655543 344456776432 111000000000
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFE 343 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 343 (534)
.++.++++. .+...+........++....+.|.++. +.++++...+.
T Consensus 199 -----------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------- 246 (385)
T TIGR00710 199 -----------------FLLLLKSKM-------FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGL-------- 246 (385)
T ss_pred -----------------HHHHHcCch-------hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHH--------
Confidence 000111111 111222222222333334444454443 34444433222
Q ss_pred hhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcce
Q 009442 344 TSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNST 423 (534)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (534)
......++.+++.++.+++.||+++|+.+..+..+..++...+....... ...+..........+.+.....+.
T Consensus 247 ----~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 320 (385)
T TIGR00710 247 ----LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG--LGSWAMIIGPMMFVGIGNSMISSI 320 (385)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788899999999999999999988888777766665554432210 122222222222222222223445
Q ss_pred eeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 424 TFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 424 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
......|..| +.++++.++.+.....++.+.+.+.+...
T Consensus 321 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 321 AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566678777 56899999999888765555555555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.91 Aligned_cols=354 Identities=10% Similarity=0.008 Sum_probs=244.9
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLI 108 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~ 108 (534)
..+.+...+......+.+|.+..++ +.+..+.+++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~ 72 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAG------------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADL 72 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHH
Confidence 3445666666777788888888777 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMIL 188 (534)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l 188 (534)
+..++.++..++..... .+++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 151 (365)
T TIGR00900 73 IRAVLVAVLPFVALLGG-LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM 151 (365)
T ss_pred HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877731000 16899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcc--cCCccchhhhcCChHHHHHHHHhhhccc
Q 009442 189 SKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKM--PETGRYTAIIEGNAKQAASDMGRVLDIE 266 (534)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~--~esp~~~~~~~~~~~~~~~~~~~~~~~~ 266 (534)
.+ ..+||+.|++.++..++..+..+.+ ||+++. ++++.+++ ..
T Consensus 152 ~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~------- 196 (365)
T TIGR00900 152 YA-----------------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAAS---EIQALSNA--VL------- 196 (365)
T ss_pred HH-----------------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc---cccccchh--HH-------
Confidence 73 4469999998777665554443333 332211 00000000 00
Q ss_pred cchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhhccccc-ccccccccccchhhhHhhh
Q 009442 267 IDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQN-LTQKDIFPA-MGLVHKAPQVNALREVFET 344 (534)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 344 (534)
++.+ +..+..++++. ++......+.....+.... .+.|.+.++ .+.++...+
T Consensus 197 -----~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 250 (365)
T TIGR00900 197 -----RDTR----EGIKFVLKNPL-------LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYG---------- 250 (365)
T ss_pred -----HHHH----hHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHH----------
Confidence 0000 00001111111 1222222222222222222 344544443 344333222
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
.......++.+++.++.+++.||.+||+.+..+..+.+++...+... .++.....+..+..+++.....+..
T Consensus 251 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 251 --WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT------PPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 25666777888899999999999999998888776666666555443 1112222233333333333345566
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
.++..|.+|++.|+++.|+.+...+++..++|.+.+.+.+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999998876
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=243.72 Aligned_cols=346 Identities=22% Similarity=0.329 Sum_probs=274.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHH
Q 009442 27 IAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGIT 106 (534)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~ 106 (534)
.+.+..+...++....++..|.+.+++ +.+..+.+++.+...++..+++++.|+++||+|||+.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~ 70 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLG 70 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHH
Confidence 345566777888888899999988877 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009442 107 LILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSM 186 (534)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~ 186 (534)
.++..++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.....++|..+++.+++
T Consensus 71 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (352)
T cd06174 71 LLLFALGSLLLAFA------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144 (352)
T ss_pred HHHHHHHHHHHHHh------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 459999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccc
Q 009442 187 ILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIE 266 (534)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 266 (534)
.+.+ ..+||+.+++.++..++..+...+++ |
T Consensus 145 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------ 175 (352)
T cd06174 145 LLAE-----------------------SLGWRWLFLILAILGLLLALLLLFLL--R------------------------ 175 (352)
T ss_pred HHHH-----------------------HhhHHHHHHHHHHHHHHHHHHHHHHH--H------------------------
Confidence 8873 34599999987777666555544332 0
Q ss_pred cchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cccccccccchhhhHhhhh
Q 009442 267 IDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAM-GLVHKAPQVNALREVFETS 345 (534)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 345 (534)
.++......+...........+.+.+..+. +.++.+.+
T Consensus 176 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 214 (352)
T cd06174 176 ------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAG----------- 214 (352)
T ss_pred ------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH-----------
Confidence 022233333333444444455555555443 34333222
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 346 RAMFVVALLGTFPGYWFTVFLIEKIGRFI-IQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
.......++.+++.++.+++.||++||+ .+..+..+..++.+.+... ++.....+..+..+.+.....+..
T Consensus 215 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 215 -LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------PSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHhccchhH
Confidence 2677778889999999999999999999 8888888888877776653 222333333444444444556778
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
..+..|..|++.|++.+|+.+....++..+++.+.+.+.+ ..+++..+.+.+++.+++.+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHhee
Confidence 8899999999999999999999999999999999999987 458888899988888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=259.87 Aligned_cols=380 Identities=13% Similarity=0.143 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
++..++++.+...++....++..|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||+|||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 70 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDL------------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLF 70 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHH
Confidence 456677888999999999999999999988 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
+.+.++..++.++++++ ++++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 71 LISTFAFTLGSLLCGVA------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred HHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999998 559999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHH----
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASD---- 258 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~---- 258 (534)
+++++. ++.+||+.|++.++..++..+ ..+..||+++. .+++.+.....
T Consensus 145 ~~~~l~-----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~g~~l~~~ 198 (485)
T TIGR00711 145 LGGWII-----------------------ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA---ASENFDFLGLLLLSV 198 (485)
T ss_pred cHhHhc-----------------------cCcCceehhhhhhHHHHHHHHHHHHHcCCcccc---ccCCCcHHHHHHHHH
Confidence 999886 467899999987766655443 34456664331 11111111000
Q ss_pred --------HHhhhccccchhhhhhh-------------hhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 009442 259 --------MGRVLDIEIDEEHDKLS-------------QFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNL 317 (534)
Q Consensus 259 --------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (534)
..+..+.+..++..... ..+.+...+....+..+++ .+.......+.....++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 276 (485)
T TIGR00711 199 GLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYR--NFTIGCVYMSLLGLGLYGSFY 276 (485)
T ss_pred HHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCC--ChHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000111122222222221 122233333444455555556
Q ss_pred hhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009442 318 TQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDY 396 (534)
Q Consensus 318 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 396 (534)
+.|.++++ .|+++.+.+. ...+..++.+++.++.+++.||++||+.+..+..+..++...+......
T Consensus 277 ~~p~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGL------------HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP 344 (485)
T ss_pred HHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 66766654 4555443332 6677778889999999999999999999888888777776665522111
Q ss_pred cccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 397 LKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
..+.+..... .+..+++.....+.......+..|++.++++.|+.+....+|+.+|+.+.+.+.+
T Consensus 345 --~~~~~~~~~~-~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 345 --DTPFLAIALP-QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred --CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122222222 2222222211222333455677899999999999999999999999999888876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=245.63 Aligned_cols=374 Identities=15% Similarity=0.176 Sum_probs=242.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
.+..++.+.+.++...++..|++.+..+.+.+++.| |++.+..|++.+.+.+.+.+++|+.|+++|||
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f------------ni~~s~~Gll~~vf~v~~~i~sPl~gyLadry 95 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF------------NISDSELGLLQTVFIVVFMIASPLFGYLADRY 95 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc------------CCCchhccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 344566788888999999999999999999999998 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
.||+++.+|..+|.++.+.++++ +.||+++++|.+.|+|.+...++++++++|.+|..+|++++++++.+..+|
T Consensus 96 NR~~v~~vG~~iW~~Av~~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG 169 (493)
T KOG1330|consen 96 NRKRVIAVGIFIWTLAVFASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG 169 (493)
T ss_pred CcceEEeeHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence 99999999999999999999999 669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~ 256 (534)
..+|.+++..+.+. ...|||.|+..++++++..++ .++.+|++|- .+++..
T Consensus 170 sglG~vvgs~va~~----------------------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg------a~~~~~ 221 (493)
T KOG1330|consen 170 SGLGYVVGSVVASL----------------------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERG------ARDEVD 221 (493)
T ss_pred cceeEEeeeeeccC----------------------ccceEEEEEeehHHHHHHHHHHHhhccCcccc------cccccc
Confidence 99999999888732 223999999988888775554 4566775432 111100
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHh-hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFF-QRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQV 335 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 335 (534)
...+. ..... +.++.++.... +......+......+..+..-+....+.+....-.+....
T Consensus 222 ~~~~~-----~~~~t---------s~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~---- 283 (493)
T KOG1330|consen 222 GENKM-----VKPFT---------SVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHN---- 283 (493)
T ss_pred cCCcC-----CCCcc---------chHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccc----
Confidence 00000 00000 00000011000 0000112222222222221111111111111111221111
Q ss_pred chhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhH----HHHHHHHHHH----HHHHHHHHHHhhhcccchhHHHHH
Q 009442 336 NALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRF----IIQLVGFFMM----SLFMLIIGIKYDYLKNDNKWLFAT 407 (534)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 407 (534)
.+.++..+...++.+|.+++|.++||+.|+ ....+..+.. ..+...+.+... ......+..++
T Consensus 284 --------~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-~~~~s~~~~~i 354 (493)
T KOG1330|consen 284 --------ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-FTSSSMIFGLI 354 (493)
T ss_pred --------cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-hhhHHHHHHHH
Confidence 233367777888899999999999995431 1111111111 111111111111 11122333333
Q ss_pred HHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhccc
Q 009442 408 LYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLD 465 (534)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~ 465 (534)
++.+........+ ....-+..|++|++.|.++.++-..+..+ |..-+|.+.|.+.+.
T Consensus 355 l~~~g~~~~~~~~-a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 355 LFLVGETISWFNW-ATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHHhccc-ccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 3333332222222 33334568999999999999999888775 555566688888764
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.02 Aligned_cols=371 Identities=14% Similarity=0.139 Sum_probs=244.5
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHH
Q 009442 31 GFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILM 110 (534)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 110 (534)
+++...+++..++...|.+.+++ +++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 70 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEI------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILC 70 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHh------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHH
Confidence 45677788999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 009442 111 VICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAG-LVSMILS 189 (534)
Q Consensus 111 ~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~-~~~~~l~ 189 (534)
+++.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++ .++..+.
T Consensus 71 ~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 71 AIVNLFFGFS------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHHHHHHHHh------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 9999999998 45999999999999999999999999999999999999999999999999999999 4555554
Q ss_pred HHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccc
Q 009442 190 KIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEID 268 (534)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (534)
...+||+.|++.++..++ .++..++.||+|+.. ..++.++.. ..+.+
T Consensus 145 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~ 192 (379)
T TIGR00881 145 -----------------------ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC--GLPPAEEMP-------NEEPD 192 (379)
T ss_pred -----------------------hcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc--ccCccccCc-------ccccc
Confidence 345799999887765554 445555677766531 111100000 00000
Q ss_pred hhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHH
Q 009442 269 EEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRA 347 (534)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 347 (534)
.++.++.++.+.++...+...+. +.++...+..+...........+.+.++.+ .++++.+.+.
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------ 256 (379)
T TIGR00881 193 --GDAEKKEEELTKKQIFLQYVLLN--KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASW------------ 256 (379)
T ss_pred --cccccccccccchHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------
Confidence 00000000000111111111111 123333333344444444455556665543 3554433222
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGR-FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (534)
......++.+++.++.+++.||..+ |+..... .........+..... .. ........+..+..+....+..+....
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV-FFMALIIVSLLVYWL-NP-AANPLMDLICLFALGFLVYGPQMLIGV 333 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH-HHHHHHHHHHHHHhc-Cc-chhHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5667778889999999999998643 3322211 111111111111110 00 111222222222222223334444556
Q ss_pred cccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhH
Q 009442 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQH 473 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (534)
+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+ ..||+.
T Consensus 334 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~ 377 (379)
T TIGR00881 334 IASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD---GFGWAG 377 (379)
T ss_pred HHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH---hhcccc
Confidence 77899999999999999999999999999999999987 345544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=248.75 Aligned_cols=378 Identities=20% Similarity=0.262 Sum_probs=243.6
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHH-----HHHHHHHHhHhHhhhhhccchhHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGV-----ALVGTLTGQLFFGWLGDKLGRKKVYGIT 106 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~lg~~i~~~~~g~l~dr~Grr~~~~~~ 106 (534)
.+.+++|+..++...+.+.++++. +.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 71 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFP----------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVIT 71 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcC----------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHH
Confidence 356788999999999988887632 2344555554443 3444457899999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCccc--hHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 009442 107 LILMVICAICSGLSFGSSARS--VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184 (534)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~ 184 (534)
.++..++.++++++++..... ....+++.|+++|++.+...+...+++.|++|+++|++..+....+..+|.++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 72 LLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred HHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999985521000 012588999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
+..+....... ....++||+.|++.++..++........||+|++. .++++++
T Consensus 152 ~~~~~~~~~~~---------------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------- 204 (394)
T TIGR00883 152 VLLLSYLLGDD---------------ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFE--KAQEKHK---------- 204 (394)
T ss_pred HHHHHHhcCHH---------------HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHhccc----------
Confidence 87765422210 11356899999987777666666555677765431 1000000
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFE 343 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 343 (534)
+. +.+.++.++ ++.+.++......+.....++....+.|.+.+ +.+.++...+.
T Consensus 205 ----~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------- 259 (394)
T TIGR00883 205 ----KK--------RGPIRETLT-----KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALL-------- 259 (394)
T ss_pred ----cc--------cCCHHHHHH-----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHH--------
Confidence 00 000111111 11111333333444444555555666666663 34444432222
Q ss_pred hhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 344 TSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFM-LIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
......++.+++.++.+++.||+|||+.+.....+..+.. ..+..... ..+.+... ...+..++......+
T Consensus 260 ----~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~~~~~ 331 (394)
T TIGR00883 260 ----VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD---SGSFTLFF-FLVLGLALIGGMYTG 331 (394)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc---CCchHHHH-HHHHHHHHHHHHHhh
Confidence 5566677888899999999999999998775554444332 22221111 01222222 222222222223345
Q ss_pred eeeecccccCChhhhhhhhhHHH-HHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHH
Q 009442 423 TTFVLPAELFPTRVRSTCHALSA-AAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFT 481 (534)
Q Consensus 423 ~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (534)
...++..|.+|++.|+++.++.. ....+|..++|.+.+.+.+..+ .+...++...+.
T Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~ 389 (394)
T TIGR00883 332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAAL 389 (394)
T ss_pred hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHH
Confidence 56788899999999999999854 4456788899999999987432 255444444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=241.27 Aligned_cols=362 Identities=14% Similarity=0.152 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG 104 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~ 104 (534)
+....++.+....+....++.+|.+.+++ |.|..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~ 75 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQE------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY 75 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45556777788888999999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 009442 105 ITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~ 184 (534)
.+.++.+++.++++++ +|++.++++|+++|++.+...+...+.+.+..++++|+++++.+..+.++|..+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 149 (381)
T PRK03633 76 LASLIFAAGCAGLGLM------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLL 149 (381)
T ss_pred HHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5599999999999999998888888888899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
++.+..... ....|+..+ +...+..+.....+|++. +++ +
T Consensus 150 ~~~l~~~~~-------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~--~---------- 189 (381)
T PRK03633 150 VSKVSTELM-------------------SVLPWVTGL----VLAAILPLLFTRILNQQA-----ENH--D---------- 189 (381)
T ss_pred Hhccccccc-------------------chHHHHHHH----HHHHHHHHHHhcccCCCC-----CCC--C----------
Confidence 988762110 111233221 111111111111222100 000 0
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFET 344 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (534)
.++..+.++++.. +... ...+.....+.....+.|.+.++.|.++...+.
T Consensus 190 --------------~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~--------- 239 (381)
T PRK03633 190 --------------STSIWPMLKLRQA----RLGV---NGCIISGIVLGSLYGLMPLYLNHQGMSDASIGF--------- 239 (381)
T ss_pred --------------CCCHHHHHHhcch----HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH---------
Confidence 0000111111111 1111 111111122222333456666555554433222
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
......++.+++.+..+++.||+++|+.+..+..+..++...+. . . ........+ .+.......|..
T Consensus 240 ---~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~-~----~~~~~~~~l----~g~~~~~~~p~~ 306 (381)
T PRK03633 240 ---WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S-Q----AAMAPALFI----LGAAGFTLYPVA 306 (381)
T ss_pred ---HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h-h----HHHHHHHHH----HHHHHHhHHHHH
Confidence 45566678888999999999999999988887777666554332 1 1 111111111 111222345666
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
.+...|..|++.++.+.+..+...++|..++|.+.|.+.+ ..++...|.+.+.+.++..+..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ---NYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCccHHHHHHHHHHHHHHHHHH
Confidence 6777898998888888888888889999999999999987 44677788887777766554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=244.75 Aligned_cols=376 Identities=13% Similarity=0.100 Sum_probs=251.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCch-----hHHHHHHHHHHHHHHHhHhHhhhhhccch
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTP-----INNFVIGVALVGTLTGQLFFGWLGDKLGR 99 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~g~~~s~~~lg~~i~~~~~g~l~dr~Gr 99 (534)
....+++.++.++......+.+|.+.+++ +++.. +.|++.+++.++..+++++.|+++||+||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 83 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQL------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR 83 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHh------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence 33445566677777778888899988877 55543 35899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 100 KKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 100 r~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
|+++..+.++.+++.+++.++ ++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLA------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL 156 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999888887 559999999999999865 4677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHH
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASD 258 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~ 258 (534)
+++.+++.+.+ ..+||+.|++.++..++..+ ..+++||+++. .+ ++++...++
T Consensus 157 ~~~~~~~~l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 210 (408)
T PRK09874 157 LGPLAGGLLAD-----------------------SYGLRPVFFITASVLFLCFLVTLFCIRENFQP--VS-KKEMLHMRE 210 (408)
T ss_pred HHHHHHHHHHH-----------------------HhCHHHHHHHHHHHHHHHHHHHHHHhccCccc--cc-chhhhHHHH
Confidence 99999998873 44699999987776655443 34456665321 11 100000000
Q ss_pred HHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchh
Q 009442 259 MGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNAL 338 (534)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 338 (534)
. . +.++++.. ....................+.+.+..+.+......
T Consensus 211 ~--------------~---------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 256 (408)
T PRK09874 211 V--------------V---------TSLKNPKL------VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNI----- 256 (408)
T ss_pred H--------------H---------HhCcCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----
Confidence 0 0 00011100 000111111111111112222233333322111100
Q ss_pred hhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 339 REVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
.........+..++.+++.+..+++.||++||+.+..+..+..++.+.+... .+.+. ..+..+..+++..
T Consensus 257 ---~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~g~~~~ 326 (408)
T PRK09874 257 ---AFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------QTPLQ-LGILRFLLGAADG 326 (408)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh------ccHHH-HHHHHHHHHhhhH
Confidence 0011123444566777888889999999999999888877666555544332 12222 2222222233333
Q ss_pred CCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
...+...+...+..|++.+++.+++.+....+|..++|.+.+.+.+ ..+|+..|.+.+++.+++.+..++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 327 ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA---NYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566788899999999999999999999999999999887 4578899999988888887776653
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=240.93 Aligned_cols=354 Identities=10% Similarity=0.016 Sum_probs=229.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh-ccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL-SFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+++..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++.. .... ++++.+++.|++.|++.+
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH---ANYPLILLFYGIRGLGYP 120 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC---ccHHHHHHHHHHHHcchH
Confidence 899999999999999999999999999999999999999999999988776532 1100 347888999999999988
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI-IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML 223 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~ 223 (534)
...+...+++.+++|+++|++++++...+.++|. .+++.+++.+. +..||+..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~-----------------------~~~g~~~~~~~ 177 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI-----------------------PAFGEMNTLWS 177 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------cccchHHHHHH
Confidence 8777788889999999999999999999999997 57888887766 34556555554
Q ss_pred hhHHHHHH-HHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHH
Q 009442 224 GALPALTT-YYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302 (534)
Q Consensus 224 ~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (534)
.....++. ++..++.+|.++. .. ++++++.+ +.++ ..+..+++ +.++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~---------------~~~~----~~~~~~~~-------~~~~~~~ 228 (402)
T TIGR00897 178 ALAFVLTGGVIALFSNKDIFTP--QH-MQTREKFS---------------ELGK----AATILFTN-------PNVLLGG 228 (402)
T ss_pred HHHHHHHHHHHHHhccCCCCCc--cc-ccCCcchh---------------hHHH----HHHHHHcC-------hhHHHHH
Confidence 33322222 2222334443211 00 00000000 0000 00011111 1233333
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH-HHHH
Q 009442 303 STWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL-VGFF 381 (534)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~-~~~~ 381 (534)
...++....++....+.|.+.++.|++..+.+. ......++.+++.++.|+++||++||+.+. .+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l 296 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQ------------IWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGV 296 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 444445556666677778887776665543322 455667788999999999999999887654 2333
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhh
Q 009442 382 MMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQS 461 (534)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 461 (534)
...++...+........ ++.+.. .+..+..+....+..+. .....|..| +.|+++.|+.+....++..++|.+.+.
T Consensus 297 ~~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~ 372 (402)
T TIGR00897 297 GCGIFTLALYYIPQHFG-HSFAVA-LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVL 372 (402)
T ss_pred HHHHHHHHHHHHHHccC-CcHHHH-HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222111000 122222 22222222222222332 234566655 579999999999999999999999999
Q ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 462 YTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
+.+ ..|+...+++.+++.+++.+...+++
T Consensus 373 l~~---~~g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 373 FIG---FFGAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred HHh---hcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 987 45788888888888888777766653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=244.18 Aligned_cols=384 Identities=12% Similarity=0.070 Sum_probs=253.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-----ch
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-----GR 99 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-----Gr 99 (534)
.....+..+..+......+..+|...++. |.+..++|.+ +.....+ ++.+++|+++||+ ||
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTLQAWMTVE------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 44455556677777888888888887776 8898999987 3344444 6899999999999 99
Q ss_pred hHH-HHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 100 KKV-YGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 100 r~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
|+. ++.+.++.+++..++++.+.. ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~---~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPG---TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM 156 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 986 667777777887777776321 5588999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASD 258 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 258 (534)
++++.++.++.+ ...|||..|++.++..++..+..+++||+++. . +++++...+.
T Consensus 157 llg~~l~~~l~~----------------------~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~--~-~~~~~~~~~~ 211 (491)
T PRK11010 157 LVSGGLALWLAD----------------------RYLGWQGMYWLMAALLIPCIIATLLAPEPTDT--I-PVPKTLEQAV 211 (491)
T ss_pred HHHHHHHHHHHh----------------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--c-ccccchhhhH
Confidence 999999988872 13589999999877777666665567886542 1 1000000000
Q ss_pred HHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccccch
Q 009442 259 MGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQVNA 337 (534)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 337 (534)
.+ +..+.++ ++........ .+......+....+.+.++ ++.|++..+.+.
T Consensus 212 ------------~~--------~l~~~~~----~~~~~~~ll~---~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~-- 262 (491)
T PRK11010 212 ------------VA--------PLRDFFG----RNNAWLILLL---IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGL-- 262 (491)
T ss_pred ------------HH--------HHHHHHc----CcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH--
Confidence 00 0001111 1111111111 1122222222222333343 345555443322
Q ss_pred hhhHhhhhHHHH-HHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHh
Q 009442 338 LREVFETSRAMF-VVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFA 416 (534)
Q Consensus 338 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (534)
.. ....++.+++.+++|+++||+|+|+.+..+.++..+..+.+...... . .+.+.......+.....
T Consensus 263 ----------~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~-~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 263 ----------VNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-D-KNLYSMGAAVFFENLCG 330 (491)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccHHHHHHHHHHHHHHH
Confidence 33 45557888999999999999999887776665555444333221110 0 12222111111111111
Q ss_pred hcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 009442 417 NFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTET 495 (534)
Q Consensus 417 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (534)
+.+ .+..+++..+..+++.+++..|+.+....+|..+++.+.|.+.+ ..||...|.+.+++++++.+...+++++
T Consensus 331 g~~-~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 331 GMG-TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE---AHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 12345677888899999999999999999999988889999887 4578888999888888888877776554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-28 Score=237.68 Aligned_cols=342 Identities=14% Similarity=0.126 Sum_probs=233.0
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMV 111 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 111 (534)
.....+....+.+..|.+.+++ +.+..+.+++.+++.++..++++++|+++||+|||+++..+.++..
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 82 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADL------------QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA 82 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH
Confidence 4444456677788888888888 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 112 ICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKI 191 (534)
Q Consensus 112 i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~ 191 (534)
++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..+++.+++.+.
T Consensus 83 ~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~-- 154 (401)
T PRK11043 83 LGSLGMLWV------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL-- 154 (401)
T ss_pred HHHHHHHHh------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999888 459999999999999988877778889999999999999999988888999999999999887
Q ss_pred HhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhh
Q 009442 192 FLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEH 271 (534)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (534)
+..+||+.|++.++..++..+..++++|+++. +++++....
T Consensus 155 ---------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------- 195 (401)
T PRK11043 155 ---------------------NHFGWQAIFATLFAITLLLILPTLRLKPSKKA-----RKQSQDALT------------- 195 (401)
T ss_pred ---------------------hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc-----cccchHHHH-------------
Confidence 45679999998777766655555556554321 000000000
Q ss_pred hhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHH
Q 009442 272 DKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVV 351 (534)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (534)
.++.++++.. +...+........++....+.|.+.++.|+++...+. ....
T Consensus 196 ----------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~ 246 (401)
T PRK11043 196 ----------FKQLLKSKTY-------LGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGL------------SYVP 246 (401)
T ss_pred ----------HHHHHcChhH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHH------------HHHH
Confidence 0011111111 1111111222223333344555565555555443222 3455
Q ss_pred HHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeeccccc
Q 009442 352 ALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAEL 431 (534)
Q Consensus 352 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 431 (534)
..++.+++.++.+++.||+++|+..........++.+.+........ ...+.......+ .++......+.......|.
T Consensus 247 ~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (401)
T PRK11043 247 QTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH-PSLVPLLIPFCV-MAAANGAIYPIVVAQALRP 324 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 56677888889999999999988766655555444433322211111 122222222222 2222233345555555566
Q ss_pred CChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 432 FPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 432 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
.| +.++++.|+.+..+..++..++.+.+.+.+
T Consensus 325 ~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 325 FP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred Cc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 66 478999999999988888888888888876
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=240.05 Aligned_cols=364 Identities=13% Similarity=0.071 Sum_probs=240.0
Q ss_pred HHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH-HHHH
Q 009442 31 GFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG-ITLI 108 (534)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~-~~~~ 108 (534)
.++..++......+.+|. +.+++ |.|..+.|++.+++.++..+.+++.|+++||+||||.++ .+.+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 72 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEV------------RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCL 72 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHccc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 356666667777777776 45666 899999999999999999999999999999999988765 4566
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhH--HHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF--IAAVFAMQGVGIIFAGLVSM 186 (534)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~--~~~~~~~~~lG~~i~~~~~~ 186 (534)
+..++.++++++ ++++.+++.|++.|.+.+...|...++..|+.|+++|++. .+....+.++|..+++.+++
T Consensus 73 ~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~ 146 (375)
T TIGR00899 73 LAALACLLFAWN------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF 146 (375)
T ss_pred HHHHHHHHHHhc------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence 666777788887 5589999999999988888888888889999887777654 57778888999999999999
Q ss_pred HHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhcc
Q 009442 187 ILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDI 265 (534)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 265 (534)
.+. +..+||+.|++.++..++..+ ..+++||+|+.. .+++.+
T Consensus 147 ~l~-----------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------ 189 (375)
T TIGR00899 147 WLA-----------------------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA--PGALTR------------ 189 (375)
T ss_pred HHH-----------------------HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc--ccccCc------------
Confidence 887 345799999998776665444 344578876531 110000
Q ss_pred ccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccccchhhhHhhh
Q 009442 266 EIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQVNALREVFET 344 (534)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 344 (534)
.+ .++.++++.. +......+. ..........+.+.++ ++.+.++...+.
T Consensus 190 ------~~--------~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------- 239 (375)
T TIGR00899 190 ------LE--------VRGLLASRDT----RLLFVACTL---MWGCNILYIINMPLLIIHELGLPDKLAGL--------- 239 (375)
T ss_pred ------ch--------hhhhhcCcch----HHHHHHHHH---HHHHHHHHHhhhHHHHHHHcCCCHHHHHH---------
Confidence 00 0001111111 111111111 1111111222333333 233444332211
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
......+..+++.++.+++.||++||+.+..+.++..+....+... ++.+.... ..+..++......+..
T Consensus 240 ---~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 240 ---MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------NSLWALLM-LQLLNAIFIGILAGIG 309 (375)
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3344445567778899999999999998877766554443333221 12222222 2222222222223455
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
..+..|..|++ +++++++.+...++|..++|.+.+.+.+ ..+++..+.+.+++.+++.+...+++
T Consensus 310 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 310 MLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE---RWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHheec
Confidence 56778888765 5799999999999999999999999887 44788888888888888777766554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=241.77 Aligned_cols=390 Identities=15% Similarity=0.134 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc
Q 009442 20 YHVTAIVIAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG 98 (534)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G 98 (534)
..+.++..++...+....+...++...-. +.++ .+....+.+.+.++++++++++.+++|.+.||++
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~ed------------l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ 109 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKED------------LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP 109 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccc------------cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 34445555566667777777655543321 2233 3888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
..+.+....+++++..++.... +|++.+++.|++.|+.+++.+|....+++.|+.+++|++.++++.+..++|.
T Consensus 110 ls~~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 110 LSKGLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 9999999999999888888876 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAAS 257 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~ 257 (534)
++|.+++..+.+.-+ .....||||.|++.++++++ .++..+++|+.|.. ..-.+++|..-
T Consensus 184 i~ggliA~g~~~~~~-----------------~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~--~~fl~~~ek~~ 244 (495)
T KOG2533|consen 184 IFGGLIAYGVFKLNG-----------------SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSK--AWFLTDEEKEL 244 (495)
T ss_pred HHHHHHHHHhhhhcC-----------------CCCcCCceeehhHHHHHHHHHHheEEEEecCChhh--ccccchHHHHH
Confidence 999999988764211 22467899999997766655 56667789999872 11111111111
Q ss_pred HHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccc
Q 009442 258 DMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVN 336 (534)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 336 (534)
..++.++.+.+...++ .+.....+.++ .+.++...+.+++.....++...+.|.++++ .+++..+++.
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~~~~~a~~-------dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~- 313 (495)
T KOG2533|consen 245 VVERLRESPSGGIENK---FKWKGFKEALK-------DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL- 313 (495)
T ss_pred HHHHHHhccCCCcccc---cCHHHHHHHHh-------chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc-
Confidence 1111111111111110 00001111111 1236677778888888888888999999888 4466666555
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh----hhhHHHHHHHHHHHHHHH-HHHHHHhhhcccchhHHHHHHHHH
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEK----IGRFIIQLVGFFMMSLFM-LIIGIKYDYLKNDNKWLFATLYGL 411 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 411 (534)
+.++..++++++.+++|+++|| ..+|........+..+.. +.+... . .........+.
T Consensus 314 -----------ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~-~----~~~~~~~~~~~- 376 (495)
T KOG2533|consen 314 -----------LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA-A----VLPGAYGAFLI- 376 (495)
T ss_pred -----------ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-c----cchHHhHHHHh-
Confidence 7888899999999999999999 556665555544444433 222221 1 11111111111
Q ss_pred HHHHhhcCCcceeeecccccCChhhhhh-hhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHH
Q 009442 412 TFFFANFGPNSTTFVLPAELFPTRVRST-CHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLV 477 (534)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (534)
.........+......++....+.|.. ..+........+++++|.+....... .+.+...|..
T Consensus 377 -~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap--~y~~~~~f~~ 440 (495)
T KOG2533|consen 377 -GPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP--RYGWGAVFYM 440 (495)
T ss_pred -cchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc--chhhhhHHHH
Confidence 111112223344445555555544443 34444444455555555554443332 2355666633
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=242.40 Aligned_cols=347 Identities=20% Similarity=0.237 Sum_probs=240.1
Q ss_pred HHHHHHhhhhHHHHHHHHh-hhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSK-LLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
+++.+...++...+.+..| .+.+++ |.+..+.+++.+++.++..+++++.|+++||+|||+++..+.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~ 69 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEEL------------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGL 69 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCS------------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehh
Confidence 4556777778888889999 788877 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~ 187 (534)
++.+++.++..++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.
T Consensus 70 ~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 70 LLFALGSLLLAFA------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhhhh------hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 9999997777776 2366999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHHHHHHhhhccc
Q 009442 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAASDMGRVLDIE 266 (534)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~ 266 (534)
+. +..+||+.|++.++..++..++ ..+++++|+.....++++++
T Consensus 144 l~-----------------------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------ 188 (352)
T PF07690_consen 144 LI-----------------------SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------ 188 (352)
T ss_dssp CC-----------------------CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------
T ss_pred hh-----------------------hccccccccccccchhhhhhhhHhhhhhhcccccccccccccc------------
Confidence 76 4567999999988877776553 34555544321011111110
Q ss_pred cchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcc-ccccccc-ccccccchhhhHhhh
Q 009442 267 IDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDI-FPAMGLV-HKAPQVNALREVFET 344 (534)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~ 344 (534)
++. +++..+.++....++. ++......+.....++....+.|.+ .+..+++ ...
T Consensus 189 -~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------ 244 (352)
T PF07690_consen 189 -SKK--------PKPLKPGFKSLFKNPV---LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------------ 244 (352)
T ss_dssp ---H--------HHCCCH-CTHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------------
T ss_pred -ccc--------ccccccccccccccch---hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------------
Confidence 000 0000011111111111 1112222223333444455566665 3344444 122
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
......+..+..+++.++.+++.||+++|+..........+..+.+...... .+.........+ .+++.....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~g~~~~~~~~~~ 320 (352)
T PF07690_consen 245 AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS---SSPVWLIIALFL-IGFGFGIVFPIL 320 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---CHHHHHHHHHHH-HHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 2225667777788889999999999998777776666666655555443321 122222222222 222333345677
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhh
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGA 456 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~ 456 (534)
..+..|..|++.|+++.|+.+...+++..++|
T Consensus 321 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 321 FSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78889999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=233.57 Aligned_cols=369 Identities=12% Similarity=0.016 Sum_probs=235.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 28 AGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
.+++.++..+....+....+.+.+++ +.+..+.+++.+.+.+++.+++++.|+++||+|||++++++.
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~ 75 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKEL------------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIAN 75 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHH
Confidence 34455555554444455555566666 778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~ 187 (534)
++.++++++++++ .+. ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|.++||.++++
T Consensus 76 ~~~~~~~~~~~~~------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 76 GIKLLGCLLMLFG------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888776 223 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhcccc
Q 009442 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEI 267 (534)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (534)
+.. +.|+..+.+.+...++..+..+.+||+|+. ..+++.++ .+..++.
T Consensus 147 l~~------------------------~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~~~~~~----- 194 (393)
T PRK11195 147 LAD------------------------PHAEAALAVCALIYLLAALFNLFIPRLGAR--RPGQSWNP-IALLRDF----- 194 (393)
T ss_pred HHH------------------------HHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccccCCCH-HHHHHHH-----
Confidence 873 127777776555555555555678887643 11111110 0000000
Q ss_pred chhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHH
Q 009442 268 DEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRA 347 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (534)
.+ ..+.+++++..+. .++...+.+.......+....+.+.. .+.++...+.
T Consensus 195 ---~~--------~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---lg~s~~~~G~------------ 245 (393)
T PRK11195 195 ---FH--------ACRVLWRDKLGRF---SLAGTTLFWGAGATLRFLVLAWAPVA---LGITLNQPAY------------ 245 (393)
T ss_pred ---HH--------HHHHHHhCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---cCCChhHHHH------------
Confidence 00 0001111211111 11111122222222222222222222 2343333222
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++.+++.++.+++.||.++++.+..+.. .++....+... ++.+.......+. +++.....+...+.
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~------~~~~~~~~~~~~~-G~~~g~~~~~~~~~ 317 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ------HSLLPAYPLLILI-GALGGFFVVPMNAL 317 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH------hHHHHHHHHHHHH-HHhhhhhhhhHHHH
Confidence 6677778889999999999999988877766643 33333222221 1223222222222 22222222334456
Q ss_pred ccccCChhh-hhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 009442 428 PAELFPTRV-RSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 428 ~~e~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
..+..|++. +|++.++.+...+++..++..+.+.+.. .|.+..+.+.+...++++.+.+
T Consensus 318 ~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 318 LQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK----LGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHH
Confidence 677766654 7999999999999999999988886643 3666666665555555555544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-28 Score=235.58 Aligned_cols=365 Identities=13% Similarity=0.048 Sum_probs=232.2
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLI 108 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~ 108 (534)
.+..+...++...+.+.+|.+.+++ +.+..+.++..+++.++++++++++|+++||+|||++++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 89 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDF------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGAL 89 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHH
Confidence 4445667778888999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMIL 188 (534)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l 188 (534)
+++++++++.++ ++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+
T Consensus 90 ~~~~~~~~~~~a------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 90 IFTLACAATLFT------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 55999999999999998876677778899999999999999999999999999999999888
Q ss_pred HHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHHHHHHhhhcccc
Q 009442 189 SKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAASDMGRVLDIEI 267 (534)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (534)
. +..+||+.|++.++..++..+. .+.+||+++. .+++.+ .....
T Consensus 164 ~-----------------------~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~-~~~~~-------- 208 (413)
T PRK15403 164 M-----------------------HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS-AKSVL-------- 208 (413)
T ss_pred H-----------------------HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC-hHHHH--------
Confidence 7 3457999999977776665543 4567886531 111000 00000
Q ss_pred chhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cccccccccchhhhHhhhhH
Q 009442 268 DEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAM-GLVHKAPQVNALREVFETSR 346 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 346 (534)
+ ..+..+++ +.++...+........++....+.|.++++. |.++...+.
T Consensus 209 -------~-----~~~~ll~~-------~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl----------- 258 (413)
T PRK15403 209 -------R-----DFRNVFRN-------RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAW----------- 258 (413)
T ss_pred -------H-----HHHHHHcC-------HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHH-----------
Confidence 0 00111111 1233333333344444455555666666553 454443322
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee
Q 009442 347 AMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (534)
.......+.+++..+.+++.++..+++.......+..++..++....... .+.+....+..+..+.+.....|....
T Consensus 259 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~--~~~~~~~~~~~~l~~~G~~~~~p~~~~ 335 (413)
T PRK15403 259 -TQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW--PHVWLWSVLGTSLYAFGIGLIFPTLFR 335 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444556666666777766544443333222222223322222211000 122221112222122221112233321
Q ss_pred cccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHH
Q 009442 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNML 484 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (534)
..-+ -....+|++.++.+.....+..+++...+++.+. +-...+...+++..+
T Consensus 336 ~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 336 FTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN----GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHHHHHHHHHHH
Confidence 1111 1122368999999999888888888888887653 334555554444443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=235.36 Aligned_cols=391 Identities=12% Similarity=-0.017 Sum_probs=248.1
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD 95 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d 95 (534)
..++.....+....+.++..+++....++..|.+++++ +++..+.|++.+.+.+++.+++++.|++.|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~------------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d 86 (438)
T PRK10133 19 GQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566667777888899999999999999999988 999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH---hccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHH
Q 009442 96 KLGRKKVYGITLILMVICAICSG---LSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 172 (534)
Q Consensus 96 r~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 172 (534)
|+|||+++..+..+++++.+++. ++ ++++.++++|+++|+|.|...+....++.|+.|+++|.+.+++.+.
T Consensus 87 r~G~r~~l~~g~~~~~~~~~l~~~~~~a------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~ 160 (438)
T PRK10133 87 KLSYKAGIITGLFLYALGAALFWPAAEI------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT 160 (438)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHH
Confidence 99999999999999999998863 45 5599999999999999999999999999998877777778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCcc-cccccCCCC--CcchHHHHHH-hhHHHHHHHHH-HhcccCCccchh
Q 009442 173 MQGVGIIFAGLVSMILSKIFLQ-LFPAPAFEDD-EIFSTQPEG--DYLWRIVLML-GALPALTTYYW-RMKMPETGRYTA 246 (534)
Q Consensus 173 ~~~lG~~i~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~wr~~~~~-~~i~~~~~~~~-~~~~~esp~~~~ 246 (534)
.+.+|..+++.++..+...... ...+...... .... .... -.+||++|+. ..+..++.++. ....||.+..
T Consensus 161 ~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~-~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~-- 237 (438)
T PRK10133 161 FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLS-AYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-- 237 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--
Confidence 9999999999998766511000 0000000000 0000 0000 0257777764 33333333222 2234442210
Q ss_pred hhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-c-
Q 009442 247 IIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-P- 324 (534)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 324 (534)
++.++..... .++.+++++++..+ ...+..++.....+....+.+.++ +
T Consensus 238 ---~~~~~~~~~~-------------------~~~~~~ll~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~l~~~ 288 (438)
T PRK10133 238 ---NHSDAKQGSF-------------------SASLSRLARIRHWR-------WAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_pred ---ccccccccch-------------------hhhHHHHHhCchHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000000 00001111221111 111111222223332333444442 2
Q ss_pred cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q 009442 325 AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWL 404 (534)
Q Consensus 325 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (534)
..|.++...+. ......++.++|+++++++.||+++|+++..+..+..+.+.+.... ...+.
T Consensus 289 ~~g~s~~~ag~------------~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~ 350 (438)
T PRK10133 289 IPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------GGHVG 350 (438)
T ss_pred cCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------CChHH
Confidence 24555544333 6778888999999999999999999999888877666555444332 11121
Q ss_pred HHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc-hhHHHHHHHHH
Q 009442 405 FATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-IQHAVLVLAFT 481 (534)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 481 (534)
...+ ...+++.....|..++...|..|++ .+++.++..+ ..+|+.++|.+.+.+.+. .| .+..|++..+.
T Consensus 351 -~~~~-~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~---~g~~~~~~~v~~~~ 421 (438)
T PRK10133 351 -LIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDA---AGNIPTAELIPALC 421 (438)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHh---ccchHHHHHHHHHH
Confidence 2222 2233334445677888888888764 5777887764 557888899999988773 33 55566544333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=232.88 Aligned_cols=336 Identities=15% Similarity=0.207 Sum_probs=221.8
Q ss_pred hHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHH
Q 009442 38 DLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICS 117 (534)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 117 (534)
....+.+.+|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 6 ~~~~~~p~~~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~ 73 (377)
T PRK11102 6 AIDMYLPALPVIAADF------------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73 (377)
T ss_pred HHHHHhccHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 3456678889988888 9999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009442 118 GLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFP 197 (534)
Q Consensus 118 ~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~ 197 (534)
.++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+
T Consensus 74 ~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------- 140 (377)
T PRK11102 74 ALA------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV------- 140 (377)
T ss_pred HHH------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 988 4589999999999999999889999999999999999999999999999999999999988873
Q ss_pred CCCCCcccccccCCCCCcchHHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhh
Q 009442 198 APAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQ 276 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (534)
..+||+.|++.++..++. +...++.||+++. . ++++.+..+ ..+
T Consensus 141 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---------------~~~- 185 (377)
T PRK11102 141 ----------------WFSWHAIFWVLALAAILAAALVFFFIPETLPK--E-RRQPFHLRT---------------TIR- 185 (377)
T ss_pred ----------------HcChHHHHHHHHHHHHHHHHHHHHhCCccCcc--c-ccCCCChHH---------------HHH-
Confidence 456999999877666554 3444567775432 0 100000000 000
Q ss_pred hcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhh
Q 009442 277 FKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLG 355 (534)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (534)
+..+.++++ ..+...+..+......+....+.+.++. ..|+++.+.+. ......++
T Consensus 186 ----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~ 242 (377)
T PRK11102 186 ----NFASLFRHK-------RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGY------------YFALNIVF 242 (377)
T ss_pred ----HHHHHHcCh-------HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHH------------HHHHHHHH
Confidence 000111111 1111122222222222223333333332 24554433222 56677788
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh
Q 009442 356 TFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR 435 (534)
Q Consensus 356 ~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 435 (534)
.+++.++.+++.||+|||+.+..+..+..+..+.+....... ...+............... ..+.......|..| +
T Consensus 243 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 318 (377)
T PRK11102 243 LFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD--LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-H 318 (377)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-c
Confidence 889999999999999999988887765444333322221100 1222222222222211111 12233345567666 6
Q ss_pred hhhhhhhHHHHHHH-hhhhHhhhhhh
Q 009442 436 VRSTCHALSAAAGK-AGAMIGAFVVQ 460 (534)
Q Consensus 436 ~r~~~~g~~~~~~~-~g~~~~~~~~~ 460 (534)
.++++.++.+.... +|..+++.+.+
T Consensus 319 ~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 319 MAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999998877654 56666666544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=230.44 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=193.8
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMV 111 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 111 (534)
.+........+.+.+|.+.+++ +.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++..
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~ 79 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADL------------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFI 79 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHH
Confidence 3444444555667899999988 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 112 ICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKI 191 (534)
Q Consensus 112 i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~ 191 (534)
++.+++.++ ++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.
T Consensus 80 i~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~-- 151 (392)
T PRK10473 80 IASLLCSLA------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM-- 151 (392)
T ss_pred HHHHHHHHh------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999888 448899999999999999888899999999999999999999999999999999999988776
Q ss_pred HhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhhccccchh
Q 009442 192 FLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEE 270 (534)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (534)
+..+||+.+++.++..++.. +..+.+||+++. . +++++...
T Consensus 152 ---------------------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~-------------- 193 (392)
T PRK10473 152 ---------------------LKFPWQSLFYTMAAMGILVLLLSLFILKETRPA--R-APAASSKP-------------- 193 (392)
T ss_pred ---------------------hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc--c-cCCccchH--------------
Confidence 35579999998776655543 334556776432 1 00000000
Q ss_pred hhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccccchhhhHhhhhHHHH
Q 009442 271 HDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQVNALREVFETSRAMF 349 (534)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (534)
++ .++.++++.... ......+... .......+.+.+. .+.|+++...+ ...
T Consensus 194 -~~--------~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~ 245 (392)
T PRK10473 194 -RE--------NSESLLNRFFLS---RLVITTLSVT----VILTFVNTSPVLLMEQMGFSRGEYA------------IIM 245 (392)
T ss_pred -HH--------HHHHHhCHHHHH---HHHHHHHHHH----HHHHHHHhCHHHHHHHcCCCHHHHH------------HHH
Confidence 00 000111111110 0111111111 1111122223332 23344433221 255
Q ss_pred HHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009442 350 VVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIK 393 (534)
Q Consensus 350 ~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 393 (534)
....++.+++.++.+++.||+|||+.+..+..+..++.+.+...
T Consensus 246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888899999999999999999988888777766666554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=229.13 Aligned_cols=352 Identities=17% Similarity=0.156 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchh
Q 009442 21 HVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRK 100 (534)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr 100 (534)
.++.+.+..+......+....+.+.+|.+.+++ +++..+.+++.+++.++..+++++.|+++||+|||
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr 73 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL------------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR 73 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh
Confidence 344555555555566667777888899999888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHH
Q 009442 101 KVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIF 180 (534)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i 180 (534)
+++..+.++..++.+++.++ ++++.+++.|++.|++.+...+....+..|.+++++|+++.+....+..+|..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (394)
T PRK11652 74 PVILVGMSIFILGTLVALFA------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLL 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888 459999999999999988877888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCChHHHHHHH
Q 009442 181 AGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 259 (534)
+|.+++.+. +..+||+.|++.++..++ .++..++.||+++. . +++++..+..
T Consensus 148 g~~i~~~l~-----------------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~ 200 (394)
T PRK11652 148 APLIGGLLT-----------------------TLFGWRACYLFLLLLGAGVTFSMARWMPETRPA--D--ARRTRVLASY 200 (394)
T ss_pred HHHHHHHHH-----------------------hccChHHHHHHHHHHHHHHHHHHHHhCCccCcc--c--cchhHHHHHH
Confidence 999998876 345799999987665554 33444567886532 1 1111100000
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNAL 338 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 338 (534)
++.++++..+. .+...+..+. .........+.++++ .|+++...
T Consensus 201 -----------------------~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~----- 245 (394)
T PRK11652 201 -----------------------RTLLSNRRFNC----YLLMLIGTLA---GIAVFEACSGVLMGAVLGLSSMTV----- 245 (394)
T ss_pred -----------------------HHHHcChHHHH----HHHHHHHHHH---HHHHHHHhChHHHHHHcCCCHHHH-----
Confidence 01111111111 1111111111 111111222333333 34433221
Q ss_pred hhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 339 REVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
........++.+++..+.+++.||.+++...... ...++.+.+..... ......+...... +..+++..
T Consensus 246 -------~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~g~~ 314 (394)
T PRK11652 246 -------SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLLAGLLMWIPGW-FGVMNVWTLLVPA-ALFFFGAG 314 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hccccHHHHHHHH-HHHHHHHH
Confidence 1144455666777778888888888743332222 22222111111110 0001222222222 22222222
Q ss_pred CCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
...+....+..|.+| +.++++.++.+....+|..+++.+.+.+..
T Consensus 315 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 315 MLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 334566666778887 567999999999999999999999888765
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=230.54 Aligned_cols=357 Identities=16% Similarity=0.175 Sum_probs=229.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 27 IAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
..+++.+....+...+++..|. +.+++ |+|..+.+++.+++.+++.+++++.|+++||+|||+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDL------------GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL 72 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHh------------CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 4556666677777888999995 88888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCccc-hHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 009442 106 TLILMVICAICSGLSFGSSARS-VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184 (534)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~ 184 (534)
+.++..++.++++++ + +++.+++.|+++|++.+. .+....++.|++|+++|+++.++...+.++|..+++.+
T Consensus 73 ~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 73 SLLLLAIPCLWAGLA------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999998 4 599999999999998654 56778899999999999999999998888899888888
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH-hhHH-HHHHHHHHhcccCCccchhhhcCChHHHHHHHHhh
Q 009442 185 SMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML-GALP-ALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRV 262 (534)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~-~~i~-~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 262 (534)
++.+........+ .....+||+.|++ .++. .+..++...+.+|+|+. . +++ ++. ..++
T Consensus 146 ~~~l~~~~~~~~~-------------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~--~~~~- 205 (366)
T TIGR00886 146 MPPIIGSLIFGAG-------------LPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG--K-PAT-GKL--SFKG- 205 (366)
T ss_pred HHHHHHHHHhccc-------------ccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc--c-ccc-hhc--cccc-
Confidence 8777654321100 0124579999843 3333 33444444556776542 1 000 000 0000
Q ss_pred hccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhH
Q 009442 263 LDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREV 341 (534)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 341 (534)
.....+ ++...+. .+..+++ ..+...+..+......+....+.+.++++ .++++.+.+.
T Consensus 206 --~~~~~~--------~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 265 (366)
T TIGR00886 206 --ARWSVG--------TGALGDQ--LKVFRDR--HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA------ 265 (366)
T ss_pred --cccccc--------chhHHHH--HHHHhcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------
Confidence 000000 0000000 1111111 12222233333333344445555556543 3444433222
Q ss_pred hhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCc
Q 009442 342 FETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPN 421 (534)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (534)
......+..+++.++++++.||+|||+.+..+......+...+...... . .+.+.......+...+.+. ..
T Consensus 266 ------~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~-~~ 336 (366)
T TIGR00886 266 ------YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS-P-LSLAVFIVLFVALFFFSGA-GN 336 (366)
T ss_pred ------HHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHhcc-cc
Confidence 5566667788899999999999999887777766666555555443210 0 0222222222222222222 23
Q ss_pred ceeeecccccCChhhhhhhhhHHHHHHHhhh
Q 009442 422 STTFVLPAELFPTRVRSTCHALSAAAGKAGA 452 (534)
Q Consensus 422 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~ 452 (534)
+..+.+..+..| +.+|+++|+.+..+++|+
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 446677788887 588999999999887763
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=228.07 Aligned_cols=341 Identities=14% Similarity=0.114 Sum_probs=223.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
++|..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+.
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~~~ 115 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------HEPWLLWLSCILSGLGGTL 115 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999887 5589999999999999988
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+...+++.|++|+++|++++++.....++|..+|+.+++.+. +++||+.|++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------------------------~~g~~~~f~~~~ 171 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------------------------QYDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhhHHHHHHHHH
Confidence 88888999999999999999999999999999999999999886 236999999877
Q ss_pred HHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHH
Q 009442 226 LPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMST 304 (534)
Q Consensus 226 i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (534)
+..++.. +..++.||.+. ++.+++..+ ..+..++++. ++.....
T Consensus 172 ~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 216 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKL-----STVRTPVRE-----------------------GMTRVLRDKR-------FVTYVLT 216 (400)
T ss_pred HHHHHHHHHHHHhCCcccc-----cccchhhHH-----------------------HHHHHHcCch-------HHHHHHH
Confidence 6655543 33344554211 000000000 0001111111 1111111
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHH-HhhhhHHHHHHHHHHH
Q 009442 305 WFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLI-EKIGRFIIQLVGFFMM 383 (534)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~gr~~~~~~~~~~~ 383 (534)
.+...........+.|.+.++.+..+...+. ......++...+....+++. ||++.++.+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~------------l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 284 (400)
T PRK11646 217 LTGYYMLAVQVMLMLPIMVNDIAGSPSAVKW------------MYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIM 284 (400)
T ss_pred HHHHHHHHHHHHHhhhhhHHhhcCCchHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 1111111222234556666654443322111 33333333433333445555 4566566666666666
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 384 SLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
+++...+... ++.+.... .....+.+.....|...++..+..|++.|++++|+.+....+|..++|.+.|.+.
T Consensus 285 ~~~~~~l~~~------~~~~~~~~-~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~ 357 (400)
T PRK11646 285 SLSMFPIGMV------SNLQQLFT-LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF 357 (400)
T ss_pred HHHHHHHHHh------hhHHHHHH-HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence 6665554432 12222222 1122222222233455677889999999999999999999999999999999998
Q ss_pred ccccccc-hhHHHHHHHHHHHHHHHHHH
Q 009442 464 LDEDSKK-IQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 464 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 490 (534)
+..+..+ ....+.+.+++.+++.+...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 358 DLGKALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence 8543222 34455555566665554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=229.46 Aligned_cols=360 Identities=12% Similarity=0.087 Sum_probs=234.5
Q ss_pred HHHHhhhhHHHHHHHHh-hhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHH
Q 009442 31 GFFTDAYDLFCISTVSK-LLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLIL 109 (534)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~ 109 (534)
+.+..........+.+| .+.+++ |++..+.|++.+.+.++..+++++.|+++||+|||++++++.++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~------------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~ 82 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQY------------SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA 82 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 33444444455555554 455666 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 110 MVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 110 ~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
.+++.++.+++ ++++.++++|++.|.+.+...+...++..|..|+++|+++.++.....++|.+++|.+++.+.
T Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 83 FASGFIAIPLV------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888 558888889999998888778888999999999999999999999999999999999999876
Q ss_pred HHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhccccc
Q 009442 190 KIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEID 268 (534)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (534)
. .+|+.+|++.++..++..+ ..+++||+++. + ++++++.
T Consensus 157 ~------------------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---~-~~~~~~~------------ 196 (395)
T PRK10054 157 M------------------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---I-ATETGSV------------ 196 (395)
T ss_pred H------------------------hccCcHHHHHHHHHHHHHHHHHHHHhccccc---c-ccchhhh------------
Confidence 2 3699999987776666543 33445554211 0 0000000
Q ss_pred hhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc---cccccccccccchhhhHhhhh
Q 009442 269 EEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP---AMGLVHKAPQVNALREVFETS 345 (534)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~ 345 (534)
. +.++.++++. ++......++....+.....+.+.+.. +.+.+.. ..
T Consensus 197 --~---------~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 246 (395)
T PRK10054 197 --W---------SPSVLLQDKA-------LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEK------------VV 246 (395)
T ss_pred --h---------hhhhhccCce-------ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHH------------HH
Confidence 0 0001111111 111111112111111111112222221 1111111 11
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 346 RAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
........+..+......+++.||.++|+.+..+..+..++...+.... +.+....+.....+.+.....|...
T Consensus 247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~p~~~ 320 (395)
T PRK10054 247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG------NSLLLWGMSAAVFTVGEIIYAPGEY 320 (395)
T ss_pred HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2244555556666678889999999999988888777776665554321 2222222222333333333345556
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCC 488 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (534)
.++.+..|++.|+++.+..+ ..++|..+||.+.|.+.+ ..++...+.+.+....+..++
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 321 MLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT---TLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred HHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH---HcChhhHHHHHHHHHHHHHHH
Confidence 67788899999999988655 577899999999999998 446666666654444444333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=227.51 Aligned_cols=385 Identities=10% Similarity=-0.042 Sum_probs=247.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG 104 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~ 104 (534)
+..+++.++..++.....++..|.+++++ +++..+.|++.+.+.+++.+++++.|++.||+|||+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~ 72 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAF------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGIL 72 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 45566777888888889999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHH
Q 009442 105 ITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLV 184 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~ 184 (534)
.+.++++++.+++..+... ++++.+++.|++.|+|.|...+....++.++.|+++|++.+++.+...++|..+++.+
T Consensus 73 ~g~~l~~~g~~l~~~~~~~---~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i 149 (410)
T TIGR00885 73 LGLFLYALGAFLFWPAAEI---MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVV 149 (410)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886554211 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCccccc---ccCCCCCcchHHHHHHhhHHHHHHHHHHhc--ccCCccchhhhcCChHHHHHHH
Q 009442 185 SMILSKIFLQLFPAPAFEDDEIF---STQPEGDYLWRIVLMLGALPALTTYYWRMK--MPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~ 259 (534)
+..+................... .....+..+||++|++.+++.++..+...+ .||.++ ++ +++ .
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~~-~~~-~-- 219 (410)
T TIGR00885 150 AQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------SD-AKQ-I-- 219 (410)
T ss_pred HHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------cc-ccc-c--
Confidence 98876321000000000000000 000001246999998876665554333322 333111 00 000 0
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALR 339 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 339 (534)
.. +++..+.++++. .....+..++..........+.+.+..+.+..... +
T Consensus 220 -------------~~----~~~~~~~~~~~~-------~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~-~----- 269 (410)
T TIGR00885 220 -------------SF----SASLSRLARIRH-------YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA-G----- 269 (410)
T ss_pred -------------cc----hhhHHHHHhChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH-H-----
Confidence 00 000001111111 11122222222333333344555555433221111 0
Q ss_pred hHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcC
Q 009442 340 EVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFG 419 (534)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (534)
.+.........+..+|+++++++.||+++|+.+.+...+..++.++.... .+.. ....+.+.+.+...
T Consensus 270 ----~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------~~~~-~~~~l~~~glf~s~- 337 (410)
T TIGR00885 270 ----FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------GGHV-GLYCLTLCSAFMSL- 337 (410)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------CChH-HHHHHHHHHHHHHH-
Confidence 01113344446678899999999999999998888877777766666553 1222 23333333333333
Q ss_pred CcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc--c-cchhHHHHHH
Q 009442 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED--S-KKIQHAVLVL 478 (534)
Q Consensus 420 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 478 (534)
.+|..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|..+ . .+++..|++.
T Consensus 338 ~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 338 MFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 3478888889999887655555555543 999999999999998421 1 1355566553
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=226.89 Aligned_cols=362 Identities=13% Similarity=0.109 Sum_probs=221.6
Q ss_pred HHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHH-HHHHHhHhHhhhhhccchhHHH-HHHHH
Q 009442 32 FFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALV-GTLTGQLFFGWLGDKLGRKKVY-GITLI 108 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-g~~i~~~~~g~l~dr~Grr~~~-~~~~~ 108 (534)
.+..+.......+.+|. +.+++ +++.++.|++.+...+ +..++.++.++ +||+||||.+ ..+.+
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~------------~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~ 90 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEV------------HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL 90 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence 44444444445565555 45666 8999999999876555 66666666666 9999999875 55666
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchh--hhHHHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTR--GAFIAAVFAMQGVGIIFAGLVSM 186 (534)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~i~~~~~~ 186 (534)
+.+++..+.+++ ++++.+++.+.+.|...+...+...+++.|+.++++| +...++.+.+.++|.++++++++
T Consensus 91 ~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~ 164 (393)
T PRK15011 91 LGVLACTLFAWN------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY 164 (393)
T ss_pred HHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666777777777 5588776665555444456678888888888876655 34557888899999999999999
Q ss_pred HHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCChHHHHHHHHhhhcc
Q 009442 187 ILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDI 265 (534)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 265 (534)
.+. ++.|||..|++.++..++. +...+++||.++. ++++ ++
T Consensus 165 ~l~-----------------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~----------- 206 (393)
T PRK15011 165 ALA-----------------------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPLA-TG----------- 206 (393)
T ss_pred HHH-----------------------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Cccc-cc-----------
Confidence 987 3457999999877766554 4444567876431 1100 00
Q ss_pred ccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhh
Q 009442 266 EIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFET 344 (534)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 344 (534)
+.+..+ ++ ++......... ......++....+.|.++++ .++++...+.
T Consensus 207 ----~~~~~~-----------~~---~~~~~~~~~~~---~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~--------- 256 (393)
T PRK15011 207 ----TLEAPR-----------RN---RRDTLLLFVIC---TLMWGTNSLYIINMPLFIINELHLPEKLAGV--------- 256 (393)
T ss_pred ----cccccc-----------cc---cccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH---------
Confidence 000000 00 00000011111 11111222223345555433 3443332221
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
......++.+++.++.|+++||++||+.+..+.....+....+.. . ++.+..+....+....... ..+..
T Consensus 257 ---~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~l~~~~l~~~~~g~-~~~~~ 326 (393)
T PRK15011 257 ---MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM--A----HSPAILLGLQLLNAIYIGI-LGGIG 326 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--H----hhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344445666788899999999999999877665544443322221 1 1222222211111111111 11223
Q ss_pred eecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 425 FVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
..+..|.+|+ .|+++.++.+...++|..++|.+.+.+.+ ..+|+..+.+.+++.+++.+..+++||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE---IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456788886 48999999999999999999999999887 447888888888888887777776664
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=224.62 Aligned_cols=382 Identities=10% Similarity=0.042 Sum_probs=233.1
Q ss_pred HHhhhhHHHH-HHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccch-hHHHHHHHHHH
Q 009442 33 FTDAYDLFCI-STVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGR-KKVYGITLILM 110 (534)
Q Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~ 110 (534)
+........+ ++..+.+.+++ |++..+.|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~------------g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTL------------HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3333344444 45555566656 8999999999999999999999999999999965 77888888888
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhh--------hccccchhhhHHHHHHHHHHHHHHHHH
Q 009442 111 VICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMS--------EYANKKTRGAFIAAVFAMQGVGIIFAG 182 (534)
Q Consensus 111 ~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~rg~~~~~~~~~~~lG~~i~~ 182 (534)
.++..+..+. ++++.+++.|++.|++.+...+...++.. |......|.+..| .+|.++++
T Consensus 80 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~ 147 (418)
T TIGR00889 80 ALLLFFAAQV------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAM 147 (418)
T ss_pred HHHHHHHHHh------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHH
Confidence 8888888877 55899999999999987776666555432 2222233445544 36778888
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhh
Q 009442 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRV 262 (534)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 262 (534)
.+++.+. ....|+. |++.++..++..+..+++||+|+. ..+++.+.. +.
T Consensus 148 ~l~g~l~-----------------------~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~-~~---- 196 (418)
T TIGR00889 148 WAVSLLD-----------------------IELSNIQ-LYITAGSSALLGVFALTLPDIPVA--KSTAKMSIK-VM---- 196 (418)
T ss_pred HHHHHhc-----------------------ccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC--ccccccCHH-HH----
Confidence 8877663 1223554 445444444444455678887532 111100000 00
Q ss_pred hccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHh
Q 009442 263 LDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVF 342 (534)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 342 (534)
. +....+.++++. ++...+..++..........+.+.+.++.|.++.... +...
T Consensus 197 ---------~------~~~~~~~~k~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~ 250 (418)
T TIGR00889 197 ---------L------GLDAFILFKNKR-------MAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFAD----SFVV 250 (418)
T ss_pred ---------h------hhhHHHHhcCCC-------eeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccc----hhhh
Confidence 0 000000111111 1111122222222222223344555555554432210 0011
Q ss_pred hhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 343 ETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
........+..+..+++.+..+++.||+|||+++..+.++.+++...+...... ...+....+..+..+.......+
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~---~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE---YFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 122336677777888899999999999999999999988887776665542110 01122222222222222222334
Q ss_pred eeeecccccCChhhhhhhhhHHH-HHHHhhhhHhhhhhhhhcccccc---cchhHHHHHHHHHHHHHHHHHH-hhccCCC
Q 009442 423 TTFVLPAELFPTRVRSTCHALSA-AAGKAGAMIGAFVVQSYTLDEDS---KKIQHAVLVLAFTNMLGFCCTF-LVTETKG 497 (534)
Q Consensus 423 ~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 497 (534)
....++.|.+|++.|++++|+.+ ....+|.+++|.+.|.+.+..+. .||+..|.+.+++.+++.++.+ +++|+++
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 55567899999999999999997 56789999999999999885443 4688888888888777766665 4576544
Q ss_pred C
Q 009442 498 R 498 (534)
Q Consensus 498 ~ 498 (534)
.
T Consensus 408 ~ 408 (418)
T TIGR00889 408 A 408 (418)
T ss_pred C
Confidence 3
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=219.03 Aligned_cols=364 Identities=14% Similarity=0.022 Sum_probs=241.0
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 28 AGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
+.+.++........+.|.+|.+.+++ |.|..++|++.+++.++..++++++|+++||+|||+......
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~------------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 76 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGI------------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLL 76 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44556666666777888888988887 999999999999999999999999999999999854332211
Q ss_pred -HHHHHHH-HHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 108 -ILMVICA-ICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 108 -~~~~i~~-~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
....+.. ..+..+ ++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.++++.++
T Consensus 77 ~~~~~l~~~~~~~~~------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~ 148 (382)
T TIGR00902 77 ALASAIFAAAFSAGA------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALF 148 (382)
T ss_pred HHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 1111122 233344 5699999999999999988888888887664 47889999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhcc
Q 009442 186 MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDI 265 (534)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 265 (534)
+.+. +..|||..|++..+..++.++.. .++|+++. ..++++++.
T Consensus 149 g~l~-----------------------~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~---------- 192 (382)
T TIGR00902 149 GGLI-----------------------GMFDEQNILAILTAGLAFMLIGF-LIKPTIPP--KDAIPEDES---------- 192 (382)
T ss_pred HHHH-----------------------HHcChhHHHHHHHHHHHHHHHHH-HcCCCCCC--Ccccccccc----------
Confidence 9988 35679999987655433333333 33333210 000000000
Q ss_pred ccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhh
Q 009442 266 EIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETS 345 (534)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 345 (534)
++ .++..+.++++ .++......++..........+.+.++++.|.++...+.
T Consensus 193 ------~~-----~~~~~~~l~~~-------~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~---------- 244 (382)
T TIGR00902 193 ------QG-----DSAFIALLKNP-------MNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGL---------- 244 (382)
T ss_pred ------cc-----chhHHHHHcCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHH----------
Confidence 00 00011111111 122222223333333444445666676776766554433
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 346 RAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
......++.+++.++.+++.||+|+|+.+.++.++..+....+... ++.+..... .+.-++......+...
T Consensus 245 --l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~-q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 245 --LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EAFPLIFLL-QILHCGTFAVCHLAAM 315 (382)
T ss_pred --HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999999999999888887777653 222322222 2222222222334455
Q ss_pred ecccccCChhhhhhhhhHHHH-HHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 426 VLPAELFPTRVRSTCHALSAA-AGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
.++.+. |++.|+++.++.+. ...+|..++|.+.|.+.+. .++ ..|.+.+++.+++.++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~---~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT---LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHHHHHH
Confidence 677777 89999999999874 5668999999999999983 354 56777777777665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=212.34 Aligned_cols=376 Identities=11% Similarity=0.063 Sum_probs=228.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 19 WYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPI-NNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
.+++..+.+|.++++.+ -+...+.+.|.+.+++ |+|..+ .|.+.++++.++++++++.|+++||+
T Consensus 24 ~W~~~~~~lC~fGF~~e--~R~n~s~a~p~L~~el------------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl 89 (511)
T TIGR00806 24 SWRVLVLYLCFYGFMAQ--FRPGESFITPYLLTVL------------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL 89 (511)
T ss_pred chhHHHHHHHHHHHHHH--hhchHHHHHHHHHHHc------------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666655544 3778888999999988 999999 99999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|.|+++.++.+.+++.+++.+++ +++..+.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|
T Consensus 90 G~K~vL~l~~l~Wsl~t~L~~fa------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG 162 (511)
T TIGR00806 90 RYKPVLVLQALSFVCVWLLLLLG------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLG 162 (511)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 669999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHH---HhhHHHHHHHHHHhcccCCccchhhhcCChHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLM---LGALPALTTYYWRMKMPETGRYTAIIEGNAKQ 254 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~---~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~ 254 (534)
.+++++++.++. .+|||..+. +......+++++.+++|..++.+-.++++..+
T Consensus 163 ~~Ia~~L~qll~------------------------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~ 218 (511)
T TIGR00806 163 VFLSSVLGQLLV------------------------TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR 218 (511)
T ss_pred HHHHHHHHHHHH------------------------hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc
Confidence 999999999843 346887554 44444556777778888665532122211110
Q ss_pred --HHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccc
Q 009442 255 --AASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKA 332 (534)
Q Consensus 255 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 332 (534)
...+.+.....+..+..+..+.......+.++++...-...+.++...+-|.+....++....|...+.++..-+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~ 298 (511)
T TIGR00806 219 GALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNK 298 (511)
T ss_pred cccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccc
Confidence 000000000000000000000000000011111111111112233344444455555555555555444443221111
Q ss_pred cccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 009442 333 PQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVG--FFMMSLFMLIIGIKYDYLKNDNKWLFATLYG 410 (534)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (534)
.++ ..-.+..+.+.+..+..|++-.++.+...+.++ .++.+..++++... ++-|..-+.+.
T Consensus 299 --yNG---------~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t------~~Iw~~Y~~yv 361 (511)
T TIGR00806 299 --YNG---------AVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS------HDIWVLYVTYV 361 (511)
T ss_pred --cCC---------HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc------cchHHHHHHHH
Confidence 111 133444455566777888886555443333333 33333333333332 34444444444
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
++.....+ ..++...-+++....+.-|..+|+.++..-+-..+-..
T Consensus 362 lf~~~y~f-litia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~ 407 (511)
T TIGR00806 362 LFRGIYQF-LVPIATFQIASSLSKELCALVFGINTFVATALKTIITA 407 (511)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEE
Confidence 43333332 23344444455556666688888888876655544443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=210.93 Aligned_cols=347 Identities=17% Similarity=0.120 Sum_probs=209.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+....|.+.+.+.++..+.++.+|.++||+|||++++++++..++..++.+++ +|+..++++|++.|+..|.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S------~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS------RNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhccCc
Confidence 4577889999999999999999999999999999999999999999999999999 6697778889999999876
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+..++++|.+++|+|++.++.+...+++|.++||.+|+++..+... ...+-.-.+-++..
T Consensus 138 -l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~-----------------~g~~p~alP~~~v~ 199 (451)
T KOG2615|consen 138 -LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI-----------------SGSYPFALPCLLVF 199 (451)
T ss_pred -hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh-----------------hccCchHHHHHHHH
Confidence 578899999999999999999999999999999999999999862210 01222233334444
Q ss_pred HHHHH-HHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHH
Q 009442 226 LPALT-TYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMST 304 (534)
Q Consensus 226 i~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (534)
++... .....+++||+-. .++++ ++...+.+..+++ .+..+.+ +.......+++..+..........+.
T Consensus 200 i~a~~~v~~~~~~lpETL~---~rk~~--~~~~~~~~~~~~~--~~~~~~~---~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 200 ILAAGDVTFFPWFLPETLP---LRKRN--DEHSTLQEAADDR--LALLKFA---RIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred HHHHHHHHHHHHhCCcccc---chhhc--ccccchhhhhhhh--hhhcchh---hhhhhhhhcCccccchHHHHHHHHHH
Confidence 44443 4556678999832 22222 1111111111111 0000000 00000011111111100011112222
Q ss_pred HHHHHHHHHHhhhhhhcc-cccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh--hHHHHHHHHH
Q 009442 305 WFLLDIAFYSQNLTQKDI-FPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG--RFIIQLVGFF 381 (534)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~ 381 (534)
++.....+.....+...+ -...|+++.+.+. +....++...+......+..+|.. .+..+..+..
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~------------vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~ 337 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGK------------VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLL 337 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCChhhhee------------eeehhhHHHHHHHHhccccccccccchhhHHHHHHH
Confidence 222222232222222222 1456777766554 344444333333333333334433 2334444433
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhh
Q 009442 382 MMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQS 461 (534)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 461 (534)
++.-..+.+... .....+........+.+....+....++....|+++||+++|+....+.++.++||.+.|.
T Consensus 338 ~~vP~~llls~~-------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 338 LIVPAFLLLSLA-------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred HHHHHHHHHhcc-------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 333333333322 2223333333334444444445556677888999999999999999999999999999988
Q ss_pred hccc
Q 009442 462 YTLD 465 (534)
Q Consensus 462 ~~~~ 465 (534)
+...
T Consensus 411 i~~W 414 (451)
T KOG2615|consen 411 IFSW 414 (451)
T ss_pred eEEE
Confidence 7764
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=220.06 Aligned_cols=332 Identities=13% Similarity=0.095 Sum_probs=228.8
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 009442 40 FCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL 119 (534)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 119 (534)
..+++.+|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ .
T Consensus 17 ~~~~~~lp~l~~~~------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~ 83 (355)
T TIGR00896 17 TSVGPLLPQIRSAL------------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S 83 (355)
T ss_pred ccCcccHHHHHHHh------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H
Confidence 45678899999998 9999999999999999999999999999999999999999998888888776 5
Q ss_pred ccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 009442 120 SFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAP 199 (534)
Q Consensus 120 ~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~ 199 (534)
+ ++++.+++.|++.|++.+...+....++.|++| ++|+++.+++..+.++|..+++.+++.+.+..
T Consensus 84 ~------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~------- 149 (355)
T TIGR00896 84 A------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS------- 149 (355)
T ss_pred h------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 5 448888999999999999888888889999986 68999999999999999999999988876321
Q ss_pred CCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcc
Q 009442 200 AFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKE 279 (534)
Q Consensus 200 ~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (534)
..+||+.|.+.++..++... .++||.++. . +++++ . .+
T Consensus 150 --------------~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~------------------~-----~~ 187 (355)
T TIGR00896 150 --------------GGHWQQALAWWALPALLALL--AWIPQVRRR--V-AANQT------------------T-----TR 187 (355)
T ss_pred --------------hhhHHHHHHHHHHHHHHHHH--HHhhhhccc--c-CCCCC------------------C-----CC
Confidence 12499998876554433322 234443211 0 00000 0 00
Q ss_pred cCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchh
Q 009442 280 VNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPG 359 (534)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (534)
...++.++++. .+......++....++....+.|.++++.+++....+. ......++.+++
T Consensus 188 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~------------~~~~~~~~~i~~ 248 (355)
T TIGR00896 188 LTPVRIWRSPL-------AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGS------------LLALMQLAQAAS 248 (355)
T ss_pred CCCchhhcCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHH
Confidence 01111222211 22222333344455566666777777766665443333 667778889999
Q ss_pred HHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeeccc-ccCChhhh
Q 009442 360 YWFTVFLIEKI-GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPA-ELFPTRVR 437 (534)
Q Consensus 360 ~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r 437 (534)
+++.+++.||+ +||+.+..+..+..++.+.+.+... ... .. ..+..+++.....+...+... +..+++.+
T Consensus 249 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 320 (355)
T TIGR00896 249 ALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HGL-WA--WALVLGLGQGGAFPLALTLIGLRSRQAAQA 320 (355)
T ss_pred HHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hHH-HH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHH
Confidence 99999999999 5666666776666666655554321 111 11 112222223233344444444 33456777
Q ss_pred hhhhhHHHHHHHhhhhHhhhhhhhhccccc
Q 009442 438 STCHALSAAAGKAGAMIGAFVVQSYTLDED 467 (534)
Q Consensus 438 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 467 (534)
+...++.+...+++..++|.+.+.+.+..+
T Consensus 321 g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 321 AALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999987543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=213.84 Aligned_cols=376 Identities=14% Similarity=0.050 Sum_probs=238.1
Q ss_pred HHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-----chhH-HH
Q 009442 30 MGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-----GRKK-VY 103 (534)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-----Grr~-~~ 103 (534)
.-++.+++........+|...++. |+|.+++|++..+... .+..+++|+++||+ |||| .+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l 71 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVE------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWL 71 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHH
Confidence 346777888888888898888876 9999999999777775 68999999999999 8876 68
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
+++.++.+++..+.++.+.. ++++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.
T Consensus 72 ~~~~~~~~l~~~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~ 148 (402)
T PRK11902 72 LLTQVGLAASIAAMAFCPPH---AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGG 148 (402)
T ss_pred HHHHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 88888888888887776321 447788888888888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhh
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVL 263 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~ 263 (534)
++..+.+ ...|||..|++.++..++..+..++.||+++. .. ++ ++..++.
T Consensus 149 l~~~l~~----------------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~--~~-~~-~~~~~~~---- 198 (402)
T PRK11902 149 LALWLAD----------------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP--AR-PP-RSLGEAV---- 198 (402)
T ss_pred HHHHHHh----------------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--cc-cc-chhHHHH----
Confidence 9888762 12479999999777666655555667776542 11 11 0000000
Q ss_pred ccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhh
Q 009442 264 DIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFE 343 (534)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (534)
.+ ...+.++++.. +..+...+.........+ ....+.+.++.|+++...+.
T Consensus 199 -------~~--------~~~~l~~~~~~----~~~l~~~~l~~~~~~~~~--~~~~~~l~~~~G~~~~~~g~-------- 249 (402)
T PRK11902 199 -------VG--------PLRDFFSRRGA----WALLLLIVLYKLGDAFAG--SLSTTFLIRGAGFSAGEVGI-------- 249 (402)
T ss_pred -------HH--------HHHHHHhCcCH----HHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHH--------
Confidence 00 00111111111 111111111111111111 11122233334554433221
Q ss_pred hhHHHH-HHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH---HHHHHhhcC
Q 009442 344 TSRAMF-VVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYG---LTFFFANFG 419 (534)
Q Consensus 344 ~~~~~~-~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 419 (534)
.. ....++.+++.++++++.||+++|+.+..+..+..+..+.+....... ++.+....... +..+.....
T Consensus 250 ----~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~ 323 (402)
T PRK11902 250 ----VNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP--KHLWTMALAIGIENLCGGMGTAA 323 (402)
T ss_pred ----HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223445788899999999999999887776666555443332211100 12222222211 122222222
Q ss_pred CcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 420 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
..+....++.+.+|.+.+ ++.+....++..+++.+.|.+.+ ..||...|.+.++++++++++....+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~---~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 324 FVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE---AYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred HHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455566777776544 44555556677666667888877 568888898888888887776655543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=225.95 Aligned_cols=408 Identities=13% Similarity=0.140 Sum_probs=292.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
-.-+.|.+++..++......--...++...+.+++++ +.+..+++|+.++..-...+..++.+.+.||
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f------------~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r 107 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYF------------GSSSSQIAWIGSLLLGVYLLAGPLVSALCNR 107 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHh------------CCCccHHHHHHHHHHHHHHHhccHHHHHHhh
Confidence 4456777777777766554444556677888999988 7788889999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHH-HHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHH
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCF-FRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 175 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 175 (534)
+|.|.+.+.+.++..++.++..|+ ++++++++ .-++.|+|.|..+......+..++. |+|+.+.|+...+.+
T Consensus 108 fg~R~v~i~G~~v~~~g~~lssF~------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG 180 (509)
T KOG2504|consen 108 FGCRTVMIAGGLVAALGLLLSSFA------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTG 180 (509)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCC
Confidence 999999999999999999999999 55776554 6789999999999999999998886 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHH
Q 009442 176 VGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQ 254 (534)
Q Consensus 176 lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~ 254 (534)
+|.++-|.+...+. +..|||+.+++.+.+.+-.++. ...-|.++... +. ..+
T Consensus 181 ~G~~~~~~l~~~l~-----------------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~--~~~ 233 (509)
T KOG2504|consen 181 VGTVVFPPLLKYLL-----------------------SKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK--PN--EEK 233 (509)
T ss_pred cceeeHHHHHHHHH-----------------------HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--ch--hhh
Confidence 99999999988888 4667999998866555444333 33344333320 00 000
Q ss_pred HHHHHHh-----------hh---ccccch----hhhhhhh----hcccCcccch---hHHHhhhhhhHHHHHHHHHHHHH
Q 009442 255 AASDMGR-----------VL---DIEIDE----EHDKLSQ----FKEVNKYPLL---SREFFQRHGLHLIGTMSTWFLLD 309 (534)
Q Consensus 255 ~~~~~~~-----------~~---~~~~~~----~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 309 (534)
+.+...+ .. +....+ +.+..++ .+....+..+ ....++. +.++...+...+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~ 311 (509)
T KOG2504|consen 234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAY 311 (509)
T ss_pred hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHH
Confidence 0000000 00 000000 0000000 0000111111 1333333 34555566666677
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Q 009442 310 IAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG--RFIIQLVGFFMMSLFM 387 (534)
Q Consensus 310 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~ 387 (534)
+.++....+.+.+..+.++...+... ...+.++..++++++.|++.|+.. ++.+..++.++.+++.
T Consensus 312 ~g~~~p~~~l~~~~~~~g~~~~~aa~------------l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 312 LGFNVPFVYLPSYAKSLGLSSNDAAF------------LLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhhHH------------HHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 78888888889888888887776655 788889999999999999999987 4455556666666655
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc
Q 009442 388 LIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED 467 (534)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 467 (534)
+.++.. .....++.+++.+++............+.|+.+.+.-..+.|+...+..++.++||.+.+.+.+..+
T Consensus 380 ~~~p~~-------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 380 LFLPFA-------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG 452 (509)
T ss_pred HHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence 444443 3334455555555544444444555677899999999999999999999999999999998888654
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 468 SKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
+|...|...++..+++..++++.+
T Consensus 453 --~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 453 --NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred --CeeeehhhcChHHHHHHHHHHHhH
Confidence 589999999999999998888776
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=210.94 Aligned_cols=357 Identities=10% Similarity=-0.004 Sum_probs=222.9
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchh----HHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRK----KVYGITL 107 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr----~~~~~~~ 107 (534)
++........+.+.+|...+++ +.|..+.|++.+++.++..++++++|+++||+||| +.+.+..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~------------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~ 80 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQ------------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT 80 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhc------------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3344455567778888888877 89999999999999999999999999999999984 3322222
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~ 187 (534)
.+. .......+ ++++.+++.|++.|++.+...+...+++.++ .++|++..+....+.++|..++|+++++
T Consensus 81 ~~~--~~~~~~~~------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~ 150 (382)
T PRK11128 81 LLF--AVAFWFGA------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGK 150 (382)
T ss_pred HHH--HHHHHHhc------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 211 11222233 5589999999999999998888888887776 3568888888888999999999999999
Q ss_pred HHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhcccc
Q 009442 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEI 267 (534)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (534)
+. ++.|||..|++.++..++..+..++.||.++. ++++++.
T Consensus 151 l~-----------------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------------ 191 (382)
T PRK11128 151 LV-----------------------SWFGEQAILWILTAGVASMLLGQLLRPTIMPQ----GESRQQE------------ 191 (382)
T ss_pred HH-----------------------HHcChhHHHHHHHHHHHHHHHHHHccCCCCCc----ccccccc------------
Confidence 98 35579999988666544444444444553211 0000000
Q ss_pred chhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHH
Q 009442 268 DEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRA 347 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (534)
++ ..++.++.++++ .++......+.....+.....+.+.+.++.|.+....+.
T Consensus 192 ---~~-----~~~~~~~i~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------ 244 (382)
T PRK11128 192 ---SA-----GWPAWKALLKEP-------TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGY------------ 244 (382)
T ss_pred ---cc-----ccchHHHHHcCh-------hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHH------------
Confidence 00 000111111111 122222222222223333333444555555555433322
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++.++..++.+++.||+++|+.+..+.++.+++.+.+... ++.+.. .+..+..++......+....+
T Consensus 245 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~l~g~~~~~~~~~~~~~ 317 (382)
T PRK11128 245 LWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------TALPWL-IVIQILHCGTFTVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888999999999999999888888877776655442 233322 222222222222123344455
Q ss_pred ccccCChhhhhhhhhHHHHH-HHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHH
Q 009442 428 PAELFPTRVRSTCHALSAAA-GKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCC 488 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (534)
..+. +++.+++..++.+.. ..+|..++|.+.|.+.+. .++ ..+...+++.+++.+.
T Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~---~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 318 IAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH---LGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHHHHH
Confidence 5665 555568888888744 456778999999999983 344 3555555555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=217.30 Aligned_cols=353 Identities=16% Similarity=0.095 Sum_probs=202.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh-ccCCCcc-chHHHHHHHHHHHHHhc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL-SFGSSAR-SVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~-~s~~~l~~~r~l~G~~~ 143 (534)
|++..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++...... ....... +.+...++++++.|.+.
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF 121 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999998876665554332211 1000000 00111223334444333
Q ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH
Q 009442 144 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML 223 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~ 223 (534)
....+....+..+ . .+++++..+......++|..+++.+++.+.. .+|+.+|++
T Consensus 122 ~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~------------------------~~~~~~f~~ 175 (420)
T PRK09528 122 LAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN------------------------INPQINFWL 175 (420)
T ss_pred ccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh------------------------cCchHhHHH
Confidence 3333333333222 2 2456778888888899999999999998862 369999998
Q ss_pred hhHHHHHHHHHHhcc-cCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHH
Q 009442 224 GALPALTTYYWRMKM-PETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302 (534)
Q Consensus 224 ~~i~~~~~~~~~~~~-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (534)
.++..++..+..++. +|.++. ...++++++ + ++....+ +..+.++++.. +.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~--~~~~~~~-----~~~~~l~~~~~----~~l~--- 229 (420)
T PRK09528 176 GSGSALILLVLLFFAKPDAPST--AKVANALGA----------N--ASAVSLK-----DALALLKLPKF----WFLV--- 229 (420)
T ss_pred HHHHHHHHHHHHhcccccccch--hhhccchhc----------c--cccccHH-----HHHHHccCCCe----Eeeh---
Confidence 877766655555444 333221 000000000 0 0000000 00011111111 1111
Q ss_pred HHHHHHHHHHHHhhhhhhcccccc----cccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 303 STWFLLDIAFYSQNLTQKDIFPAM----GLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
+..+.....+.......+.++.+. +.+... .+....+..++.+++.++.+++.||+|+|+.+..
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 297 (420)
T PRK09528 230 LYVIGVACFYDVFDQQFPNFFASFFATPEQGTRV------------FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLL 297 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 111111111111111222222221 111111 1124555566777889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhH-HHHHHHhhhhHhhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHAL-SAAAGKAGAMIGAF 457 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~ 457 (534)
+.++..+..+.+.+. ++.+... ...+..+.......+....+..|.+|++.+++..+. .++...+|.++++.
T Consensus 298 ~~~l~~~~~~l~~~~------~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 298 AGTIMAVRIIGSGFA------TGPLEVS-ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred HHHHHHHHHHHHHhc------ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 888777776665543 2333222 222222221111122334567888999999888766 57778899999999
Q ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 458 VVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+.|.+.+ ..||+.+|.+.+++.++..++.++.
T Consensus 371 ~~G~l~~---~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 371 LAGNLYD---SIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHH---hhCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 4478889998888877766655543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=209.98 Aligned_cols=413 Identities=13% Similarity=0.121 Sum_probs=248.4
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLI 108 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~ 108 (534)
++......+.....+.+++.+..++ |- .....|+.+...++.++++++.|+++|.||||+.++.+.+
T Consensus 50 ~~~~~~~~~~~~~~a~~l~~I~~di------------G~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~ 116 (599)
T PF06609_consen 50 SLAVIAAYFVLVLPASILPYINADI------------GG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSL 116 (599)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhc------------CC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 3334444555556677788888877 33 2467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMIL 188 (534)
Q Consensus 109 ~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l 188 (534)
+..+|.++++.+ +|...++++..+.|+|.|... .....++|..|.|.|+...++.....-.....++.++..+
T Consensus 117 l~vvG~Iv~atA------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 117 LGVVGSIVCATA------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHhHHHHhhcC------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 999999999999 669999999999999987765 4566689999999998766655543333333444444333
Q ss_pred HHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCC--hHHHHHHHHhh----
Q 009442 189 SKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGN--AKQAASDMGRV---- 262 (534)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~--~~~~~~~~~~~---- 262 (534)
. .+.+|||.|++.++...+.+++.++...+|++...+.++ +++..++++-.
T Consensus 190 ~-----------------------~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L 246 (599)
T PF06609_consen 190 A-----------------------AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFL 246 (599)
T ss_pred c-----------------------cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHH
Confidence 2 345799999998877666544433222223321111111 12222222110
Q ss_pred ---------hcccc----chhhhhhhh----------------hcc--cCcccchhHHHhhhhhhHHHHHHHHHHHHHHH
Q 009442 263 ---------LDIEI----DEEHDKLSQ----------------FKE--VNKYPLLSREFFQRHGLHLIGTMSTWFLLDIA 311 (534)
Q Consensus 263 ---------~~~~~----~~~~~~~~~----------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (534)
...+. ..+.+..+- .+. ....+++..+.++.. +.+...++..+..+..
T Consensus 247 ~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~-r~~~~~lvi~fi~G~~ 325 (599)
T PF06609_consen 247 FIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR-RGFAALLVISFISGMN 325 (599)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc-hHHHHHHHHHHHHHHH
Confidence 00010 011111000 011 123445555555432 3344445555566666
Q ss_pred HHHhhhhhhcccccc-cccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHH
Q 009442 312 FYSQNLTQKDIFPAM-GLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRF-IIQLVGFFMMSLFMLI 389 (534)
Q Consensus 312 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-~~~~~~~~~~~~~~~~ 389 (534)
+|....+.|...... +-.+..... .........++...|..+.+.+..+++|- +.++++.+++.+++.+
T Consensus 326 ~~s~~~l~p~~~~~vf~~d~~~~~~---------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga 396 (599)
T PF06609_consen 326 FFSVNILWPQQVVNVFGSDPISITE---------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGA 396 (599)
T ss_pred HHHHHHHHHHHHhhhccCCCcccce---------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 777665555543321 111111000 01144556667777888889999888764 4455666665554444
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccc----
Q 009442 390 IGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLD---- 465 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~---- 465 (534)
+..... .+.+..+.+.++..+..+. ........++-..|++.-+++.|+...+..+|+.++..+...+...
T Consensus 397 ma~~~~-~n~~~~i~~~~l~g~giG~----~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~ 471 (599)
T PF06609_consen 397 MAAVRP-DNKNAAIAFLVLAGFGIGG----ILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPK 471 (599)
T ss_pred HHHccC-CCcchHHHHHHHHHHhHHH----HHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH
Confidence 443322 1111222222222222211 1222334455678999999999999999999999888776543211
Q ss_pred -------------------------------------------------------ccccchhHHHHHHHHHHHHHHHHHH
Q 009442 466 -------------------------------------------------------EDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 466 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
....+|+++++....+..++.++.+
T Consensus 472 ~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~ 551 (599)
T PF06609_consen 472 ELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAAL 551 (599)
T ss_pred hHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012577788888888999999999
Q ss_pred hhccCCCCC
Q 009442 491 LVTETKGRS 499 (534)
Q Consensus 491 ~~~~~~~~~ 499 (534)
++++.++.-
T Consensus 552 fl~d~~~~m 560 (599)
T PF06609_consen 552 FLGDIDKYM 560 (599)
T ss_pred HcCChHHhh
Confidence 987765443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=210.77 Aligned_cols=340 Identities=12% Similarity=0.035 Sum_probs=220.7
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-----chhHH-HHHHHHHHHHH
Q 009442 40 FCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-----GRKKV-YGITLILMVIC 113 (534)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~ 113 (534)
...++..|.+.+++ |+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.
T Consensus 5 ~~~~~~~~~~~~~~------------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~ 70 (356)
T TIGR00901 5 GLVGNTLPYWLRSK------------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSL 70 (356)
T ss_pred hhHHhHHHHHHHHc------------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHH
Confidence 45677888898887 9999999999755 555555 99999999998 89997 46777888887
Q ss_pred HHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 114 AICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 114 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
....++.++. .+.+.+.+..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+
T Consensus 71 ~~~l~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 71 LLILSFLVPS---TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHcCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777776432 3467778888888998888889999999999999999999999999999999999999988874332
Q ss_pred hcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHh-cccCCccchhhhcCChHHHHHHHHhhhccccchhhh
Q 009442 194 QLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRM-KMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHD 272 (534)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (534)
. +...+++||.+|++.++..++..+..+ ..||+++. .+.+ ++..++.. +
T Consensus 148 ~---------------~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~-~~~~~~~~-----------~ 197 (356)
T TIGR00901 148 A---------------NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVP-KPLTQAVL-----------K 197 (356)
T ss_pred c---------------ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccc-hhHHHHHH-----------H
Confidence 1 011355699999998887766555544 35664321 0000 00000000 0
Q ss_pred hhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHH
Q 009442 273 KLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVA 352 (534)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (534)
..+..++++. .+..+...+..+.....++....+.+.+..+.|+++.+.+. ......
T Consensus 198 --------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~-----------~~~~~~ 254 (356)
T TIGR00901 198 --------PIREFFQRKN----MIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIAL-----------VAKING 254 (356)
T ss_pred --------HHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-----------HhHHHH
Confidence 0011111111 01122233333334455555566666666666665543222 122233
Q ss_pred HhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----chhHHHHHHHHHHHHHhhcCCcceeeecc
Q 009442 353 LLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN----DNKWLFATLYGLTFFFANFGPNSTTFVLP 428 (534)
Q Consensus 353 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
.+..+++.++++++.||+|||+.+..+.++..+...++.+....... ....+......+...+......+...++.
T Consensus 255 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 334 (356)
T TIGR00901 255 LLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFL 334 (356)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35677889999999999999998888887777665554443211000 01112222222222232233455677888
Q ss_pred cccCChhhhhhhhhHHHHHHH
Q 009442 429 AELFPTRVRSTCHALSAAAGK 449 (534)
Q Consensus 429 ~e~~p~~~r~~~~g~~~~~~~ 449 (534)
.|.+|++.||+.+|+.+...+
T Consensus 335 ~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 335 SKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-24 Score=209.49 Aligned_cols=378 Identities=14% Similarity=0.050 Sum_probs=250.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 28 AGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
.+++.+...+...+.....+.+..+. .-|....+++..+..+...+.+++.|.++||+.||++++.+.
T Consensus 15 lw~a~~iS~lG~~~~~va~~wlv~~l------------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 15 LWIAQLISNLGDWMQTVALAWLVTQL------------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 33444444445555556666666555 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~ 187 (534)
++..+..++.++...... .+.+.+++.-++.|++.+...|...+++.|..|+++...+.++.+...++..++||.+++.
T Consensus 83 ~~~~~~~~~L~~l~~~~~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGL-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 888766555543321111 3478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhcccc
Q 009442 188 LSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEI 267 (534)
Q Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (534)
+...++ -.+.|++.++..++.+......+..++ ..+..++.-.++++
T Consensus 162 Lva~~G-----------------------~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~------- 208 (524)
T PF05977_consen 162 LVAFFG-----------------------AAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALR------- 208 (524)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHH-------
Confidence 885444 567777766654444433333332211 00000010000010
Q ss_pred chhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhH
Q 009442 268 DEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSR 346 (534)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 346 (534)
+-++.....+..+..+.....+.. .........|.+.++ .+..+...+.
T Consensus 209 ----------------~G~ryv~~~~~l~~~l~~~~~~~l---~~~a~~aLlPl~a~~~l~~~a~~yGl----------- 258 (524)
T PF05977_consen 209 ----------------EGLRYVRSSPPLRSVLLRSFLFNL---FASAVWALLPLFARDVLGGGASGYGL----------- 258 (524)
T ss_pred ----------------HHHHHHhcchHHHHHHHHHHHHHH---hhhHHHHhhhHHHHHHhCCcHHHHHH-----------
Confidence 000111111111112111111111 111122234444332 3333333222
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee
Q 009442 347 AMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (534)
+....+++.++|.++.+++.+|+++++++..+.++.+++++.+++. .+.+..... .+..+++.........+
T Consensus 259 -l~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------~~~~~~~~~-l~l~G~~~~~~~~~~~t 330 (524)
T PF05977_consen 259 -LLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------PSFWLALIA-LFLAGAAWIIANSSLNT 330 (524)
T ss_pred -HHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------hHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999888888888888777777664 233333332 23333333333444556
Q ss_pred cccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..++..|++.||+++++..+....+..+|..+.|.+.+ ..|...++.+.++..+++.++....
T Consensus 331 ~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~---~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 331 LVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD---HFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999987 4567777777776666666655543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=239.93 Aligned_cols=355 Identities=14% Similarity=0.006 Sum_probs=221.3
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccc
Q 009442 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDY 147 (534)
Q Consensus 68 s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 147 (534)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++..++... ++++.++++|+++|++.+...
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~ 121 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL---GWFWLAFAVTFLLGAQSAIYS 121 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHhhc
Confidence 44568999999999999999999999999999999999887766666554443110 458999999999999999999
Q ss_pred cchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH-hhH
Q 009442 148 PLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML-GAL 226 (534)
Q Consensus 148 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~-~~i 226 (534)
++..+++.|++|+++|++++++...+..+|.++++.+++++........ .....+|++.+.+ ..+
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 187 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNT--------------PSEILGRIAPAGLVLLA 187 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------ccccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875311000 0001124444443 333
Q ss_pred HHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHH
Q 009442 227 PALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWF 306 (534)
Q Consensus 227 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (534)
..++.+++.+.+||+|+.. ..+..++.... ..... +....+++++. ++...+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------~~~~~----~~~~~l~~~~~-------~~~~~~~~~ 242 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAA--PEVFDKKKYLF------------PKLLW----RNLKLLRSDRV-------LWLAIIGLS 242 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCC--ccccccccccc------------HHHHH----HHHHHHhcCcH-------HHHHHHHHH
Confidence 3444455556678876541 11100000000 00000 00001111111 111122112
Q ss_pred HHHHHHHHhhhhhhcccc-ccccccc-ccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009442 307 LLDIAFYSQNLTQKDIFP-AMGLVHK-APQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMS 384 (534)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~ 384 (534)
+.....+....+.+.++. ..|++.. .. +.......++.+++.++.+++.||+++++.+.++.++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~------------g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 243 YFWFISQLAQANFPAYAKEVLGLDNTFQV------------QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLA 310 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCCcHHHH------------HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHH
Confidence 222222223333444433 2344333 22 225667778888999999999999999888887777777
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 385 LFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
++.+++... .+.+. ..+..++.+++.....+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+..
T Consensus 311 ~~~~~~~~~------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 311 LSLFLLPTA------PSLAS-VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHh------hhHHH-HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665543 12222 22222223332333344556788899999999999999999999998888777666543
Q ss_pred cccccchhHHHHHHHHHHHHH
Q 009442 465 DEDSKKIQHAVLVLAFTNMLG 485 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~ 485 (534)
. ..++...+.+.+.+.++.
T Consensus 384 ~--~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 384 L--GLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred h--ccCHHHHHHHHHHHHHHH
Confidence 1 123444455544444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=240.86 Aligned_cols=344 Identities=15% Similarity=0.075 Sum_probs=221.4
Q ss_pred chhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH---HHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 69 TPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI---TLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 69 ~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
....++..+++.+++.++++++|+++||+|||+++.. ..++..+..+..... +++++++++|+++|++.+.
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------NSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHh
Confidence 3567888999999999999999999999999997533 222222223333333 4599999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..|+..+++.|++|+++|++++++.+++.++|.++|+++++++. ...+|++.|+..+
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-----------------------~~~~~~~~~~~~~ 181 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-----------------------ISGNFVILVALLM 181 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-----------------------hccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 3457999996666
Q ss_pred HHHHHHHHHHhcccCCccchhhhcCChH-HHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHH
Q 009442 226 LPALTTYYWRMKMPETGRYTAIIEGNAK-QAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMST 304 (534)
Q Consensus 226 i~~~~~~~~~~~~~esp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (534)
+..++.+++.+++|+++.- ....+.+ ...+... ..++... + .+.++...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------------------~~~~~~~-~--~~~~~~~~~~ 233 (1140)
T PRK06814 182 GIAVLGWLASLFIPKTGNA--APDLKIDRNIIRSTI-----------------------TLLKYAK-A--DKRIWLAILG 233 (1140)
T ss_pred HHHHHHHHHHhhCCCCCCC--CCCCeeccchHHHHH-----------------------HHHHHHh-c--CchHHHHHHH
Confidence 6666666666667765421 0000000 0000000 0001111 1 1123333333
Q ss_pred HHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 009442 305 WFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMM 383 (534)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~ 383 (534)
.+...+.+.....+.|.++.+ .+.++...+ .......++.++|.++.+++.|+..+++.+..+.++.
T Consensus 234 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g------------~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 301 (1140)
T PRK06814 234 ISWFWLVGAVVLSQLPLLAKETLGGDENVAT------------LFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLM 301 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCchHHHH------------HHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHH
Confidence 333333344444556666554 344433322 2677778888999999999998877766655555555
Q ss_pred HHHHHHHHHHhh--------------hcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHH
Q 009442 384 SLFMLIIGIKYD--------------YLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGK 449 (534)
Q Consensus 384 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 449 (534)
+++.+.+.+... .....+.+...+ ..+..+++.....+...+++.+..|++.||+++|+.+++..
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 302 GLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI-DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHhcccccccccccccchhhhhcccccHHHHH-HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence 554443333100 000012232222 22222333333344566788999999999999999999999
Q ss_pred hhhhHhhhhhhhhcccccccchhHHHHHHHHHHHH
Q 009442 450 AGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNML 484 (534)
Q Consensus 450 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (534)
++..+++.+.+.+.+. ..++...+.+.+++.++
T Consensus 381 ~~~~ig~~~~g~l~~~--~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 381 AFMVAGTIILALLQAL--GFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
Confidence 9999999998888642 22455555544444333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=209.84 Aligned_cols=418 Identities=9% Similarity=0.021 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-hhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cch
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVS-KLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LGR 99 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~Gr 99 (534)
++.+..+++..+.+.+..+.....+ ..+.+++ |++..+.+++.+.+.....+..+++|+++|| +||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l------------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~ 80 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQL------------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT 80 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence 3444455555555656555555444 4445666 8899999999999998888899999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccc--hhhhHHHHHHHHHHHH
Q 009442 100 KKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGVG 177 (534)
Q Consensus 100 r~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~lG 177 (534)
|++++++.+++.+++++++++.+ ....++++|.++|+|.|...+...+++.|.+|++ +|+++.++++.+.++|
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~~-----~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig 155 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSLL-----KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIG 155 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHH
Confidence 99999999999999999998743 1234568999999999999999999999999877 4577899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhc-CChHHHH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIE-GNAKQAA 256 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~-~~~~~~~ 256 (534)
.++++.+++++. ++.|||+.|++..+..++.++.....++..+...... +++.+..
T Consensus 156 ~~~g~~l~g~l~-----------------------~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (489)
T PRK10207 156 SLISLSLAPVIA-----------------------DKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFS 212 (489)
T ss_pred HHHHHHHHHHHH-----------------------HhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhh
Confidence 999999999998 3457999999865544433333333332211100000 0000000
Q ss_pred HHHH----------hh--hccccchhhhhh-h---------hhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 009442 257 SDMG----------RV--LDIEIDEEHDKL-S---------QFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYS 314 (534)
Q Consensus 257 ~~~~----------~~--~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (534)
.... .. ............ . -.++.+..+.+ |++......+.+........+..
T Consensus 213 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~-----r~r~~~~~~l~~~~~~f~~~~~q 287 (489)
T PRK10207 213 KLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTG-----RNKMFVAFVLMLEAVVFYILYAQ 287 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 000000000000 0 00000001111 11111111111111112222222
Q ss_pred hhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHH-------HHHHHHHHHHHH
Q 009442 315 QNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFI-------IQLVGFFMMSLF 386 (534)
Q Consensus 315 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-------~~~~~~~~~~~~ 386 (534)
.....+.+.++ ... ...+... .......+..+..++..++.+++.||.++|+ .+.++.++.+++
T Consensus 288 ~~~~l~l~~~~~~~~--~~~G~~i------~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 288 MPTSLNFFAINNVHH--EILGFSI------NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred cccHHHHHHHHhccc--cccceEE------CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 22222222221 111 1111100 0011233344455566777889999999886 366777777776
Q ss_pred HHHHHHH---hhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 387 MLIIGIK---YDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 387 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
++.+... ........+.++++...+..+.+.....+....++.+..|++.++.++|+.+....+|+.++..+.....
T Consensus 360 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 360 FLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6544321 1101111222333333444445555566777888889999999999999999999999999887775442
Q ss_pred cccc-------ccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 464 LDED-------SKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 464 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
...+ ...+.+.|...++.++++.++.+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 440 VPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 1135567777777666666665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=211.53 Aligned_cols=336 Identities=15% Similarity=0.089 Sum_probs=216.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhc----cchhH-HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDK----LGRKK-VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G 140 (534)
|++..+.|++.++..+..++..++.|+++|| +|||| .++.+..+.+++.+++.+.++.........+++.+++.+
T Consensus 31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (437)
T TIGR00792 31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG 110 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 68855 567788888888888877754322223567788899999
Q ss_pred Hhccccccchhhhhhhcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 141 FGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+....+. ..+..+||+
T Consensus 111 ~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----------------~~~~~g~~~ 174 (437)
T TIGR00792 111 LFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----------------GDDKFGWFM 174 (437)
T ss_pred HHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CcccccHHH
Confidence 998887777888889987 468899999999999999988888887766643321 113568999
Q ss_pred HHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHH
Q 009442 220 VLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHL 298 (534)
Q Consensus 220 ~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
.+++.+++.++..+ ..+..+|+++. ..++ ++. + .+..+.++....++ .+
T Consensus 175 ~~~i~~~l~~~~~~~~~~~~~e~~~~--~~~~--~~~---------------~--------~~~~~~~~~l~~~~---~~ 224 (437)
T TIGR00792 175 FALVLALIGVVSLIICFFGTKERYSE--IPKN--IEK---------------K--------LSLKQIFKALFKND---QL 224 (437)
T ss_pred HHHHHHHHHHHHHHHHHcCCEecCCC--CCcc--ccc---------------C--------CCHHHHHHHHhCCH---HH
Confidence 99887777665544 34556765421 0000 000 0 00000111111111 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
+......+.....++....+.+.+.+.....+. .......+..++.+++.++.+++.||+|+|+.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 225 LILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPE------------LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HHHHHHHHHHHHHHHHHcchhheeEeeecCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 222333333333333333333333332111111 11124455578888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCC-------hhhhhhhhhHHHHHHHhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP-------TRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g 451 (534)
+..+..++.+.+.+.. ++.+... +..+..+++.....+..+++.+|..+ ++.+|.+.|+.+....+|
T Consensus 293 ~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 293 GILLMVLGYLIFFFAG-----SNLPLIL-VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHHHHHHHHcc-----hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 8877777666554421 1222222 22222222222334556667777754 556799999999999999
Q ss_pred hhHhhhhhhhhccc
Q 009442 452 AMIGAFVVQSYTLD 465 (534)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (534)
..+++.+.+.+.+.
T Consensus 367 ~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 367 QALAGFLVGLILGI 380 (437)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=207.25 Aligned_cols=412 Identities=10% Similarity=0.053 Sum_probs=246.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhh-h--cccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cchh
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGR-L--YYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LGRK 100 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~Grr 100 (534)
+..+.+..+.+.+..+...+.+|.... + + |++..+.+++.+.+.++..++++++|+++|| +|||
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l------------g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~ 79 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGL------------GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK 79 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH
Confidence 334444556666666666666666543 3 4 8999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccch---hhhHHHHHHHHHHHH
Q 009442 101 KVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKT---RGAFIAAVFAMQGVG 177 (534)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---rg~~~~~~~~~~~lG 177 (534)
+++.++.++.+++.++.+++ ++++.++++|++.|+|.|...+...++++|++|+++ |+++.++++.+.++|
T Consensus 80 ~~l~~~~~~~~~g~~~~~~~------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG 153 (475)
T TIGR00924 80 KTMVLGGIVLMLGHFMLAMS------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIG 153 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhc------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHH
Confidence 99999999999999999987 447888899999999999999999999999998754 888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhccc----CCccchhhhcCChH
Q 009442 178 IIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMP----ETGRYTAIIEGNAK 253 (534)
Q Consensus 178 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~----esp~~~~~~~~~~~ 253 (534)
.++++.+++++. ++.+|++.|++.++..++..+...+.+ +.|+. . ++.++
T Consensus 154 ~~ig~~l~g~l~-----------------------~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~ 207 (475)
T TIGR00924 154 SFISPLLAGVIA-----------------------ENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--P-DPLSG 207 (475)
T ss_pred HHHHHHHHHHHH-----------------------HhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC--C-CCcch
Confidence 999999999887 345799999987765554444433333 22211 0 00001
Q ss_pred HHHHHHHhh---------------hccccchhhhhhh--------hhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHH
Q 009442 254 QAASDMGRV---------------LDIEIDEEHDKLS--------QFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDI 310 (534)
Q Consensus 254 ~~~~~~~~~---------------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (534)
++.+...+. ...+......... ...+....+..+... +++...++.+.+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~~ 286 (475)
T TIGR00924 208 QGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVA-RNKMYAYIVLFLEAVVFWV 286 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH-HhHHHHHHHHHHHHHHHHH
Confidence 100000000 0000000000000 000000000000111 1111112222222222222
Q ss_pred HHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhh-----HHH--HHHHHHH
Q 009442 311 AFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGR-----FII--QLVGFFM 382 (534)
Q Consensus 311 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----~~~--~~~~~~~ 382 (534)
.+.......+.+..+ .+........ .......+..+..++..++..++..|.+| +.. +.++.++
T Consensus 287 ~~~Q~~s~l~l~~~~~~~~~~~~~~i--------p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l 358 (475)
T TIGR00924 287 LYAQMPTSLNFFADNNMHHEMLGMSV--------PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLF 358 (475)
T ss_pred HHHHhhhHHHHHHHHhccccccceEE--------CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 222222222222211 1111000000 01113444445555554444443334433 233 3677777
Q ss_pred HHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhh
Q 009442 383 MSLFMLIIGIKYDYLK--NDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 383 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 460 (534)
.++++..+.+...... ...+.++++...+....+.....|...++..+..|++.||+.+|+......+|..+++.+..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 359 CGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT 438 (475)
T ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766654311101 02344445555555666677778888999999999999999999999999999999988877
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 461 SYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
...+ ..++...+...++++++..++.+++
T Consensus 439 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 439 FGAV---PQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHhc---ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 6654 2356666777666666665555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-26 Score=204.51 Aligned_cols=389 Identities=14% Similarity=0.074 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc------------CCCC--------------------------CCCC
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYY------------DPAN--------------------------PKHN 63 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--------------------------~~~~ 63 (534)
..++.....+.+.+.+....+.+++|....+... +... ..+.
T Consensus 20 ~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~ 99 (464)
T KOG3764|consen 20 PLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAI 99 (464)
T ss_pred ceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhcc
Confidence 3445556666677777777777777766554431 0000 0123
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhc
Q 009442 64 PGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 64 ~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 143 (534)
+.+-+.+++|++.++..+...+.+++.|.+.||+|+|..+++|+.++..+++++++. ++|++++++|.+||+|.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------NSYPMLFVARSLQGVGS 173 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------chhHHHHHHHHHhhhhH
Confidence 446678899999999999999999999999999999999999999999999999999 77999999999999999
Q ss_pred cccccchhhhhhhccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHH
Q 009442 144 GGDYPLSATIMSEYANKK-TRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLM 222 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~-~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~ 222 (534)
+...+...++++|.+|++ +|++++|+...+.++|.++||.+|+.+.+ -.|.+.+|+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe-----------------------~~Gk~aPFl 230 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE-----------------------FAGKSAPFL 230 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh-----------------------hcCCcCcHH
Confidence 999999999999999976 48999999999999999999999999984 456899999
Q ss_pred HhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHH
Q 009442 223 LGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTM 302 (534)
Q Consensus 223 ~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (534)
+.++..++...+.+++-|..+- +.+..+ +..+.+++++.+.... ...
T Consensus 231 VL~~v~Lld~~L~l~vi~p~~~----~~~~~~-----------------------~~~~~~~Ll~dP~I~~------~ag 277 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLVIEPTEM----DPDSTE-----------------------QGTPMWSLLMDPYILL------IAG 277 (464)
T ss_pred HHHHHHHHHHHHHHheeCcccc----Cccccc-----------------------cCccHHHHHhCchHhh------hhc
Confidence 9988888876666655432110 000000 0112223333333211 111
Q ss_pred HHHHHHHHHHHHhhhhhhccc-cccccccc-ccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh--hHHHHHH
Q 009442 303 STWFLLDIAFYSQNLTQKDIF-PAMGLVHK-APQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG--RFIIQLV 378 (534)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~ 378 (534)
...+. ++..-...--.+.+. +++. ++. +.+. .+....+...+++.+.|.+.||++ |......
T Consensus 278 ai~~~-n~~lafLePtlslwm~e~m~-~p~w~~G~------------~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~ 343 (464)
T KOG3764|consen 278 AITFS-NSSLAFLEPTLSLWMLETMF-TPGWEVGL------------AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLG 343 (464)
T ss_pred chhhc-cchHHHhCcccHHHHHHhcc-CCCcceee------------eecccccchhccCchHHHHHHhcCchhHHHHHH
Confidence 11111 111111111112222 2222 222 3333 567777888999999999999999 5444444
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh---hhhhhhhHHHHHHHhhhhHh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR---VRSTCHALSAAAGKAGAMIG 455 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g~~~~ 455 (534)
+.+..+++.....+.... .+.|.......+.+........|.. .+..+.-..+ ..|..+++......+|..+|
T Consensus 344 gl~~~G~~~~~iP~~~~~---~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~G 419 (464)
T KOG3764|consen 344 GLATVGVSSGPIPFATSI---AQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIG 419 (464)
T ss_pred HHHHHHHHhchhHhhhhH---HHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhcc
Confidence 444444444444333211 1222222333333333333334433 2233332223 56888999999999999999
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 456 AFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
|.+.+.+.+ ..|+.|...+.++..++..-++.+++
T Consensus 420 P~~gg~iv~---~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 420 PTFGGSLVE---AIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred ccccchhee---ehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 77999998888998888877766553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=204.82 Aligned_cols=378 Identities=14% Similarity=0.033 Sum_probs=223.5
Q ss_pred HHHHHhhhhHHHHHHHHhhh-hhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHH
Q 009442 30 MGFFTDAYDLFCISTVSKLL-GRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLI 108 (534)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~ 108 (534)
...+........+.+.+|.. .+++ |++..+.|++.+++.++..+++++.|+++||+|||+.++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 9 LFFFLYFFIMSAYFPFFPIWLHDVN------------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 33444444555556666654 4455 8999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHHH---hccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 109 LMVICAICSG---LSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 109 ~~~i~~~~~~---~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
..+++..... +.+.. ..+.+..+++.|++.|++.+...+....+..|..+ ++++..+......++|.++++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLL-QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHH
Confidence 6655443322 11100 00123456777899999988888888777777533 345566777788889999999998
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhc-ccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 186 MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMK-MPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~-~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
+.+. +.+||.+|++.++..++..+..+. .||+|+. +++ +++. +
T Consensus 154 g~l~------------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~-------~ 197 (396)
T TIGR00882 154 GILF------------------------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATV-ANAL-------G 197 (396)
T ss_pred hhhh------------------------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhh-hccc-------c
Confidence 8775 347999999987776665444443 4443321 000 0000 0
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFET 344 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (534)
+ +++.++.+ +..+.++++. ++......+.....+.....+.+.++++...... .+. ..
T Consensus 198 -~-~~~~~~~~-----~~~~~l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~-------~~ 255 (396)
T TIGR00882 198 -A-NASAFSLK-----LALELFRQRK-------FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQ-QGT-------RV 255 (396)
T ss_pred -c-ccCCCCHH-----HHHHHHcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cch-------HH
Confidence 0 00000000 0111111111 1111111122222222222222333322111000 000 01
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
.+.......+..+++.+..+++.||+|||+.+.++..+.++........ .+.+... +..+..+..........
T Consensus 256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------~~~~~~~-~~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------TTALEVV-ILKMLHAFEVPFLLVGC 328 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------CChHHHH-HHHHHHHHHHHHHHHHH
Confidence 1224555666777788899999999999999888888777766554432 2333222 22222222211111223
Q ss_pred eecccccCChhhhhhhhhH-HHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 009442 425 FVLPAELFPTRVRSTCHAL-SAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
..+..+..|++.++++.+. .+....+|+++++.+.|.+.+ ..|+..+|.+.+++.++..+...
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~---~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD---SIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH---hcccHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888887766 577889999999999999998 45888889888888777665543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=185.49 Aligned_cols=388 Identities=16% Similarity=0.074 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhH
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKK 101 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~ 101 (534)
...+..+...+++.++......+.+|.+.+.| +++..+.+++..+++.|+.+++++.|++.+|+|+|+
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~ 79 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVF------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA 79 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHh------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH
Confidence 34556666677888888889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
.++.++.++++++.+..=+.+. .+|..++++-|+.|.|.+...+.+..++....++++..+.+++.+...++|.+++
T Consensus 80 gi~lgL~l~avg~~lF~pAa~~---~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~g 156 (422)
T COG0738 80 GIVLGLLLYAVGAALFWPAASS---KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILG 156 (422)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999998633222 6699999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHh--cccCCccchhhhcCChHHHHHHH
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRM--KMPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~--~~~esp~~~~~~~~~~~~~~~~~ 259 (534)
|.++..+...-....-.++- ..+........||++|...+...++..+... ..||.+.- ..++.+.+
T Consensus 157 p~~g~~lils~~~~~~~~~~----~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--~~~~~~~~----- 225 (422)
T COG0738 157 PLLGSSLILSGVALTMSAAQ----ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--APSLGASG----- 225 (422)
T ss_pred HHHHHHHHHhhhhhccCHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc--cccccccc-----
Confidence 99999887520000000000 0000000112378888776555544443333 23433211 00000000
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNAL 338 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 338 (534)
+....+.++++. +....+..++..........+.+.+..+ .|.+..++..
T Consensus 226 -------------------~~~~~~l~~~~~-------~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~--- 276 (422)
T COG0738 226 -------------------SAGLSSLFQNKH-------LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAY--- 276 (422)
T ss_pred -------------------cchHHHHHhChH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHH---
Confidence 000111112221 2223333344333444444555666655 4444444333
Q ss_pred hhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 339 REVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
......++.++|++++.++..|+...+.+.+..++..+.++...+. ++.+....+. +.+.+ ..
T Consensus 277 ---------~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l~-~ig~F-~s 339 (422)
T COG0738 277 ---------YLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------GGVVALYALF-LIGLF-NS 339 (422)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHH-HHHHH-hH
Confidence 6788888999999999999999998888887776666555555554 2333222222 22223 33
Q ss_pred CCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 419 GPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
..+|..++...+..|++ ....|..-.+..+|+.+.|.+.|++.|. .+....+......|.+.+
T Consensus 340 imfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~---~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 340 IMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADM---FGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHH
Confidence 45788888888988833 3444445555678999999999999983 344444443344444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=181.18 Aligned_cols=371 Identities=14% Similarity=0.100 Sum_probs=279.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhH
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKK 101 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~ 101 (534)
+..+..+.+..+..--..+..++.++.+.+++ |+|.+..|+++++..+...+.+++..+++.|+|.++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~------------gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er 78 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDL------------GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER 78 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHh------------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Confidence 44444444444444555677889999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
.+..++++.+++.++-... +.+.++.+-.+.|.|.+...+..+..+-+.+| |+-+..+++|....++|..++
T Consensus 79 ~l~~~Llli~~G~~iR~~~-------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLa 150 (395)
T COG2807 79 SLFLALLLIAAGILIRSLG-------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALA 150 (395)
T ss_pred HHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHH
Confidence 9999999999999988774 26889999999999999999999999999998 678999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHh
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGR 261 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 261 (534)
+.+...+.+.. .+||....+-+.++++.++.++ |...|. +....+.
T Consensus 151 a~lavpla~~~----------------------~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~~~~~~----- 196 (395)
T COG2807 151 AALAVPLAQHS----------------------GGWRGALGFWALLALLALLIWL--PQALRE-----QAASIAT----- 196 (395)
T ss_pred hhhhhHHHHhh----------------------ccHHHHHHHHHHHHHHHHHHHh--hhcccc-----ccccccc-----
Confidence 99999888432 3699999998888888777754 332221 0000000
Q ss_pred hhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhH
Q 009442 262 VLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREV 341 (534)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 341 (534)
+..+..++++++ ..|.+.+.+..++..+|....|.|.++.+.|++..+++.
T Consensus 197 ----------------~~~~~~~vw~~~-------~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~------ 247 (395)
T COG2807 197 ----------------KLVSVRKVWRSP-------LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGS------ 247 (395)
T ss_pred ----------------ccccccccccCc-------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhh------
Confidence 000111122222 255667777788899999999999999999999988776
Q ss_pred hhhhHHHHHHHHhhcchhHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCC
Q 009442 342 FETSRAMFVVALLGTFPGYWFTVFLIEKI-GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGP 420 (534)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (534)
...+..+..++.++....+.+|. ++|+.......++.++.+.+.+... +..+.+. +..+.+..+.
T Consensus 248 ------llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~----~~~~lw~----~llG~G~G~~ 313 (395)
T COG2807 248 ------LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG----QLPILWA----LLLGLGQGGA 313 (395)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh----hHHHHHH----HHHhCccchH
Confidence 78888889999999999999975 4667777777777777776665432 2333331 2223333344
Q ss_pred cceeeecccccC-ChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 421 NSTTFVLPAELF-PTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 421 ~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++....++.... .++..+.-.|+.+..+++-+.+||.++|++.|..+ +|...+..+....++..+.-+.
T Consensus 314 F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 314 FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhh
Confidence 555555555443 45666788899999999999999999999999766 7887777776666665555443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=192.80 Aligned_cols=378 Identities=11% Similarity=0.046 Sum_probs=231.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHH--HHHHHHHHHHHhHhH-hhhhhccchhH
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFV--IGVALVGTLTGQLFF-GWLGDKLGRKK 101 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~lg~~i~~~~~-g~l~dr~Grr~ 101 (534)
+..+...++.++.......+.+|...++. |.+.+++|++ .+++.+...+.++++ ++..||+||||
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~ 70 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR 70 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch
Confidence 44556667899999999999999999887 9999999997 467788888888888 55799999999
Q ss_pred HHHHHHHHH-HHHHHHHH-hccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 102 VYGITLILM-VICAICSG-LSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 102 ~~~~~~~~~-~i~~~~~~-~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
..++.+.+. +......+ +.+.. +...+++..-++.++..+...+...++..|..++++++...+....+..+|.+
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~ 147 (390)
T TIGR02718 71 SWVLPMQCLVSACLASLALVGPDV---AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF 147 (390)
T ss_pred hHHHHHHHHHHHHHHHHHcCCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH
Confidence 875555332 22222222 21110 22334455556666777777778888888999888888888888888889999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHH
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDM 259 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 259 (534)
+++...+++. +..|||.+|++.++..++..+..++++|+++. +++++++..+
T Consensus 148 ~g~~~~~~l~-----------------------~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 199 (390)
T TIGR02718 148 GGGAGTLVLF-----------------------GKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPLARRA-- 199 (390)
T ss_pred HHHHHHHHHH-----------------------HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccchhhHH--
Confidence 9988888777 35579999999887766655544445443211 0000000000
Q ss_pred HhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhh
Q 009442 260 GRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALR 339 (534)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 339 (534)
+.++.++++ . .+......++..........+.+.++.+.|+++.+.+.
T Consensus 200 ---------------------~~~~~l~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~---- 247 (390)
T TIGR02718 200 ---------------------SLFRFFRRP----L---AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGR---- 247 (390)
T ss_pred ---------------------HHHHHHcCc----C---HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHH----
Confidence 000111111 1 11111122222222333333455666667776654332
Q ss_pred hHhhhhHHHHHHH-HhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhc
Q 009442 340 EVFETSRAMFVVA-LLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANF 418 (534)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (534)
..... ....+++.++.|++.||+|+|+.+..+..+.++..+........+........... .+...+...
T Consensus 248 --------~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g 318 (390)
T TIGR02718 248 --------LGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC-SAFGSLITG 318 (390)
T ss_pred --------HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH-HHHHHHHHH
Confidence 33333 34566778899999999999998887766653332222211110100111111111 111111111
Q ss_pred CCcceeeecccccCCh-hhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 419 GPNSTTFVLPAELFPT-RVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 419 ~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
...+...+...+..++ +.+++.+++.+...++|..++|.+.|.+.+ ..|+...|.+.+++.+++.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~---~~G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD---RFGYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHh
Confidence 1122333444455555 889999999999999999999999999987 4578888888777776665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=189.27 Aligned_cols=418 Identities=11% Similarity=-0.022 Sum_probs=260.9
Q ss_pred hHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh----ccchhHHHHHH-HHHHHH
Q 009442 38 DLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD----KLGRKKVYGIT-LILMVI 112 (534)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i 112 (534)
......+.++.+.+++ +.+..+.+++..+..+...+.+++.|+++| |+|||++++++ .+...+
T Consensus 19 ~~~l~~~~l~~yl~~l------------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 19 GWALQLSLLTPYVQEL------------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 3344444555555666 899999999999999999999999999999 59999998774 666666
Q ss_pred HHHHHHhccCCCc-------cc--h--HHHHHHHHHHHHHhccccccchhhhhhhccccchh--hhHHHHHHHHHHHHHH
Q 009442 113 CAICSGLSFGSSA-------RS--V--IGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTR--GAFIAAVFAMQGVGII 179 (534)
Q Consensus 113 ~~~~~~~~~~~~~-------~~--s--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--g~~~~~~~~~~~lG~~ 179 (534)
+.++.+++.+... .+ . .+.++++-.+..++.....+...+++.|.+|+++| +.+.++.+.+.++|.+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 6677777643100 00 0 02233333445557777788889999999998865 6799999999999999
Q ss_pred HHHHHHHHHH--HHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHH
Q 009442 180 FAGLVSMILS--KIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAA 256 (534)
Q Consensus 180 i~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~ 256 (534)
+++.++++.. +.++....+ ++ .....+.|..|++.++..++..+ ..+..+|.|.. . +++.+++
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~-~~~~~~~- 232 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTE---------AC-GVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--G-SDDFINS- 232 (477)
T ss_pred HHHHHHHHHhHHHhccccccc---------cc-ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--c-cccchhh-
Confidence 9999998752 211100000 00 00123579999998877666544 44567887532 1 1110000
Q ss_pred HHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Q 009442 257 SDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVN 336 (534)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 336 (534)
+. .+.+..+. +...+++++ ..+...+.+..++...++..+.++....|.+.+..+.-+........
T Consensus 233 -~~---~~~~~~~~--------~~~~~~i~~--~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~ 298 (477)
T TIGR01301 233 -EA---APPSKHGE--------EAFFGELFG--AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298 (477)
T ss_pred -hc---ccccccch--------hhhHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence 00 00000000 001112211 22223334556666777777777777777666655422222222222
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhccc--------------ch
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG-RFIIQLVGFFMMSLFMLIIGIKYDYLKN--------------DN 401 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 401 (534)
.+.++...+........+...+.+++..++.+|+| ||+...++.++.++++....+.....++ ..
T Consensus 299 ~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 378 (477)
T TIGR01301 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTG 378 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchh
Confidence 34555555555666666666677788899999998 4777788888888888777654321000 00
Q ss_pred -hHHHHHHHHHHHHHhhcCCcceeeecccccCCh--hhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHH
Q 009442 402 -KWLFATLYGLTFFFANFGPNSTTFVLPAELFPT--RVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVL 478 (534)
Q Consensus 402 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (534)
.+..+..+.. .++......+++++++++..|+ +..|..+|+.|.+..+..++..+..|.+.+..+. +...++.+.
T Consensus 379 ~~~~~l~~~~~-~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~ 456 (477)
T TIGR01301 379 IKASALIVFAI-LGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVG 456 (477)
T ss_pred hHHHHHHHHHH-hhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHH
Confidence 1333333333 3333334567889999999885 4559999999999999999999888875554432 445678888
Q ss_pred HHHHHHHHHHHHh-hccCCC
Q 009442 479 AFTNMLGFCCTFL-VTETKG 497 (534)
Q Consensus 479 ~~~~~~~~~~~~~-~~~~~~ 497 (534)
++..++++++.++ +|+++.
T Consensus 457 gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 457 AVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 8888888888775 577643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=213.78 Aligned_cols=326 Identities=15% Similarity=0.145 Sum_probs=212.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
+.+.+..+.........+.+++.+.++| +++..+.|++.+.+.++++++.++.++++||+|||+.+.+
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~ 103 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRF------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGI 103 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhh------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEe
Confidence 3444566777788889999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccC----C------------C--------------------------c---cchHHHHHHHHHHHH
Q 009442 106 TLILMVICAICSGLSFG----S------------S--------------------------A---RSVIGTLCFFRFWLG 140 (534)
Q Consensus 106 ~~~~~~i~~~~~~~~~~----~------------~--------------------------~---~~s~~~l~~~r~l~G 140 (534)
+.++++++++++++..- + + . ...+..++++|+++|
T Consensus 104 g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 183 (633)
T TIGR00805 104 GCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRG 183 (633)
T ss_pred cHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHh
Confidence 99999999999987620 0 0 0 012567889999999
Q ss_pred HhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCcccccccCCCCCc--c
Q 009442 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFP--APAFEDDEIFSTQPEGDY--L 216 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~ 216 (534)
+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+.+... .+....+. ....| +
T Consensus 184 iG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~-----~dprWiGa 258 (633)
T TIGR00805 184 IGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTP-----TDPRWIGA 258 (633)
T ss_pred ccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCC-----CCccHHHH
Confidence 999999999999999999999999999999999999999999999998865432110 00000000 00112 3
Q ss_pred hHHHHHHhhHHHHHHHHHHhcccCC-ccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhh
Q 009442 217 WRIVLMLGALPALTTYYWRMKMPET-GRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHG 295 (534)
Q Consensus 217 wr~~~~~~~i~~~~~~~~~~~~~es-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (534)
|+..|++.+++.++..+.++++|+. |+. ..+.+.+...+.. . +...++.... .....++..+......+.
T Consensus 259 Wwl~Fli~g~l~~l~~v~l~~~p~~lp~~--~~~~~~~~~~~~~--~-~~~~~~~~~~----~~~~~~~~~~~~~~Ll~n 329 (633)
T TIGR00805 259 WWIGFLICGGVALLTSIPFFFFPKALPKE--GKRVNVDVHETEK--L-EKSEDKSRKK----NSDITKDFPKIIKRLLCN 329 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCc--ccccchhhhhhhc--c-cccccccchh----hhhhHHHHHHHHHHHHcC
Confidence 7778888777766655555666654 221 0000000000000 0 0000000000 000001111111111112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHh-hcchhHHHHHHHHHhhh--
Q 009442 296 LHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALL-GTFPGYWFTVFLIEKIG-- 371 (534)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g-- 371 (534)
+.++...+..++....+++...+.|.++++ .++++..++. ......+ +.++|.+++|+++||++
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~------------l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANF------------LIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH------------HhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 235555555666666777777888888764 5665544332 3333333 55788999999999987
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009442 372 RFIIQLVGFFMMSLFMLI 389 (534)
Q Consensus 372 r~~~~~~~~~~~~~~~~~ 389 (534)
.|+.+..+.++..++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 398 VKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666665444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=196.93 Aligned_cols=156 Identities=13% Similarity=0.208 Sum_probs=125.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
..++|.++..........+. .+.++...|.+.+++ |+|..+.+++.++. .....++++.|+++||+
T Consensus 23 e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~l------------gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~ 88 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARY------------NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYL 88 (591)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh------------CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 45677766665555544443 346677888899988 99999999998874 44567888899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVG 177 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG 177 (534)
|||+++.++.++++++.++++++.+.....+++.+++.|++.|+|.+...+.+...+.+|+| ++||++.++...+.++|
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLG 167 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLG 167 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHH
Confidence 99999999999999999999997332112359999999999999999988899999999997 78999999999999999
Q ss_pred HHHHHHHHHHH
Q 009442 178 IIFAGLVSMIL 188 (534)
Q Consensus 178 ~~i~~~~~~~l 188 (534)
.++.+.+...+
T Consensus 168 saI~~~l~~~l 178 (591)
T PTZ00207 168 SAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHH
Confidence 98655444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=196.11 Aligned_cols=412 Identities=13% Similarity=0.083 Sum_probs=231.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cchhHHHH
Q 009442 27 IAGMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LGRKKVYG 104 (534)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~Grr~~~~ 104 (534)
.+++..+.+.+..+.....++. +.+++ |++..+.+++.+.+........+++|+++|| +|||+++.
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~l------------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQL------------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 3444444455554444554444 44666 8899999998888776666667899999999 59999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccch--hhhHHHHHHHHHHHHHHHHH
Q 009442 105 ITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKT--RGAFIAAVFAMQGVGIIFAG 182 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~i~~ 182 (534)
.+.++.+++.++++++.+ +.+.++++|+++|++.|...+...+++.|++|+++ |..+.++++.+.++|..++|
T Consensus 93 ~g~~~~~ig~~l~~~~~~-----~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 93 LGAIVLAIGYALVAWSGH-----DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred HHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 999999999999888632 25667789999999999988999999999998643 45678888999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH----HhcccCCccchhhhcCChHHHHHH
Q 009442 183 LVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW----RMKMPETGRYTAIIEGNAKQAASD 258 (534)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~----~~~~~esp~~~~~~~~~~~~~~~~ 258 (534)
.+++++. ++.|||+.|++.++..++.++. ...++|.++....++.+.......
T Consensus 168 ~i~g~l~-----------------------~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (500)
T PRK09584 168 LATPWLA-----------------------AKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLT 224 (500)
T ss_pred HHHHHHH-----------------------HhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHH
Confidence 9999987 3557999999877544443322 223343211000000000000000
Q ss_pred ---------HHhhhccccchhhhhh--------hhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 009442 259 ---------MGRVLDIEIDEEHDKL--------SQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKD 321 (534)
Q Consensus 259 ---------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (534)
.......+.+...... ....+.. .+ .++. .+++ .+.. +..+.....++......+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~---~~~~-~~~~~~~i~f~~~~~q~~~ 297 (500)
T PRK09584 225 IVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA-FA-MKGA-ARRK---MIVA-FILMLEAIIFFVLYSQMPT 297 (500)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hh-cCHH-HHHH---HHHH-HHHHHHHHHHHHHHHHhcc
Confidence 0000000000000000 0000000 00 0011 1111 1111 1122223334433333333
Q ss_pred cccccc---ccccccccchhhhHhhhhHHHHHHHHhhcchhHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009442 322 IFPAMG---LVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFT----VFLIEKIGRFIIQLVGFFMMSLFMLIIGIKY 394 (534)
Q Consensus 322 ~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~ 394 (534)
.+...+ .+....+... .......+..+..++..++. +++.+|.+..+.+.++.++.+++++.+....
T Consensus 298 ~l~~~~~~~~~~~~~g~~i------~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~ 371 (500)
T PRK09584 298 SLNFFAIRNVEHSILGIAV------EPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGA 371 (500)
T ss_pred HHHHHHHHhccccccceEE------CHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211 1101001000 01112333444444444444 4444445555778888888888888776653
Q ss_pred hhccc--chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc------ccc
Q 009442 395 DYLKN--DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT------LDE 466 (534)
Q Consensus 395 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~ 466 (534)
..... .-+.++.+...+..+.+.....|....++.+..|++.||+++|+......+|..++..+..... +..
T Consensus 372 ~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~ 451 (500)
T PRK09584 372 KFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPL 451 (500)
T ss_pred HhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch
Confidence 31110 0112234444445555566677888889999999999999999887777677666665553221 100
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHHh
Q 009442 467 D-SKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 467 ~-~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
. ..++...|...++.+++..++.+.
T Consensus 452 ~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 452 MSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 113667787777776655544443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=184.89 Aligned_cols=341 Identities=10% Similarity=-0.007 Sum_probs=200.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhh----ccchhH-HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGD----KLGRKK-VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G 140 (534)
+++..++|.+..+.-+.-++..|+.|+++| |+|||| .++++.+..+++..++...++.+....+..+++.-++.+
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~ 117 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG 117 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 669955 466677777777666644432211112455666777778
Q ss_pred Hhccccccchhhhhhhcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 141 FGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
++.....+.-.++..|.. ++++|.+..++-..+.++|..+.+.+...+...++. .....+|+.
T Consensus 118 ~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~----------------~~~~~g~~~ 181 (473)
T PRK10429 118 MTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG----------------GDRGFGFQM 181 (473)
T ss_pred HHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHH
Confidence 888888888889999999 588999999887777777766666655544433221 112346888
Q ss_pred HHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHH
Q 009442 220 VLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHL 298 (534)
Q Consensus 220 ~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
...+.++..++..+ ..+..+|.+.. ...+.++++ +.+.++.++....+ +.+
T Consensus 182 ~~~i~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~-----------------------~~~~~~~~~~~~~n---~~~ 233 (473)
T PRK10429 182 FTLVLIAFFIVSTIITLRNVHEVYSS--DNQVSAEGS-----------------------HLTLKDIVALIYKN---DQL 233 (473)
T ss_pred HHHHHHHHHHHHHHHHHcCceecCCc--ccccccccc-----------------------CCCHHHHHHHHhcC---HHH
Confidence 77776665555333 33345664321 000000000 00011111111111 112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
...+...+......+....+.+.+.+........ .........+..+++.++.+++.||+|+|+.+..
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 234 SCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 2222333333333443333444443332111110 1113445557778888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCC-------hhhhhhhhhHHHHHHHhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP-------TRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g 451 (534)
+..+..++.+.+...... ...+.+.. .+..+..+.+.....+..+++.+|..+ .+..|..+|..++...++
T Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~ 379 (473)
T PRK10429 302 ASIFPVLSCGVLLLMGLA-APHNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG 379 (473)
T ss_pred HHHHHHHHHHHHHHHhcc-CchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence 777655554444322110 11222222 222222222233334556677888855 344566889999999999
Q ss_pred hhHhhhhhhhhcc
Q 009442 452 AMIGAFVVQSYTL 464 (534)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (534)
..+++.+.+.+.+
T Consensus 380 ~al~~~i~g~~l~ 392 (473)
T PRK10429 380 SAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=165.94 Aligned_cols=396 Identities=12% Similarity=0.053 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cc
Q 009442 20 YHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LG 98 (534)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~G 98 (534)
+|...+...++..|.+++.....+........+. +++.++..++.+.|.....+-+++.|++.|| +|
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~------------ni~~akftLlYsvYSwPNvVlcffgGflidr~fg 108 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDS------------NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFG 108 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhccc------------ccceeeeeeeeeeccCCCEEEeeecceeehhhhh
Confidence 3455555556666666766666666655555544 8888899999999999999999999999996 58
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHH
Q 009442 99 RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGI 178 (534)
Q Consensus 99 rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~ 178 (534)
-|..-++-+....++.++++.-. ..+.+|++.++||+.|+|.-...++..+|+.-|+..|+.+.++|+......+|.
T Consensus 109 ir~gtii~~~fv~~GqliFa~Gg---i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gs 185 (459)
T KOG4686|consen 109 IRLGTIILCIFVFLGQLIFAAGG---ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGS 185 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhc
Confidence 88776666667777777766531 126799999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH---HHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHH
Q 009442 179 IFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI---VLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQA 255 (534)
Q Consensus 179 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~---~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 255 (534)
.+-..+.+++.+..+..+| ..|-.. ...+....+...++...-+ .| .++.+
T Consensus 186 tvNf~lm~~ly~~~~~~~~----------------~~ghT~LG~~l~~~~~tc~~slical~l----g~------~D~rA 239 (459)
T KOG4686|consen 186 TVNFLLMPFLYDTMGRMFP----------------GVGHTLLGLWLCFEVKTCKQSLICALSL----GL------SDDRA 239 (459)
T ss_pred eeeeeecHHHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHh----hh------hhhHH
Confidence 8888888888776665432 111111 1111111111111111100 01 11111
Q ss_pred HHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccc
Q 009442 256 ASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQ 334 (534)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 334 (534)
++.+.+.++. .. |+.+.++ ...+ ....+.+..+++.+....+.+ ....+.++ +..|+++..++
T Consensus 240 erilh~e~g~-~G-e~pkLtd------v~~f-----~ppfw~~~iicv~yyva~fPF---i~lg~~fF~~rfGlS~~~a~ 303 (459)
T KOG4686|consen 240 ERILHLEEGF-LG-EEPKLTD------VNTF-----YPPFWVLVIICVLYYVAWFPF---ITLGPMFFQKRFGLSAVSAG 303 (459)
T ss_pred HHHHhhhcCc-cc-CCccccc------cccc-----CccHHHHHHHHHHHHHHHHHH---hhhhHHHHHHhhCCChhhcc
Confidence 1111111000 00 0000000 0111 111111222233333322333 33344444 34688877665
Q ss_pred cchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 009442 335 VNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMS-LFMLIIGIKYDYLKNDNKWLFATLYGLTF 413 (534)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (534)
. ......+...+..++.|.++||.|++...+.+..+.. ++...+.+... +++..+.+..+.+
T Consensus 304 ~------------i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~l-----sPy~~m~~lGLsy 366 (459)
T KOG4686|consen 304 N------------ILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFL-----SPYTSMTFLGLSY 366 (459)
T ss_pred c------------hhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhc-----cHHHHHHHHhhhH
Confidence 5 5555666677788999999999999877665544433 34444444322 4454455555444
Q ss_pred HHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009442 414 FFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-IQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 414 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
...... .|..++.+.|+++.|++.|.+..+.++|-.+.|++.+.+.+..+.+. .+..|+..+.+++.+..+.+++
T Consensus 367 sllAcs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 367 SLLACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 433332 45566888999999999999999999999999999999998654222 2334555666666666666655
Q ss_pred c
Q 009442 493 T 493 (534)
Q Consensus 493 ~ 493 (534)
.
T Consensus 443 N 443 (459)
T KOG4686|consen 443 N 443 (459)
T ss_pred e
Confidence 3
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=167.70 Aligned_cols=409 Identities=12% Similarity=0.025 Sum_probs=270.6
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh
Q 009442 16 RTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD 95 (534)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d 95 (534)
+..++||.+++.+++-.+.+++....++++.......| + +....-|..-+|++.+....+++-|+.|
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y------------g-s~~~~~wlsmIym~v~vp~gf~~mw~ld 104 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFY------------G-SSSAADWLSMIYMVVSVPFGFAAMWILD 104 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHh------------c-chHHHHHHHHHHHHHHHHHhhHHHHhhc
Confidence 56678999999999999999999988888888777766 6 6677889999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccchHH--HHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHH
Q 009442 96 KLGRKKVYGITLILMVICAICSGLSFGSSARSVIG--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 173 (534)
Q Consensus 96 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 173 (534)
++|-|...+++..+.++|+.+-..+....-.+.++ ....+..+.+.+.-...........-|+++++|..+..+-.++
T Consensus 105 k~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~ 184 (480)
T KOG2563|consen 105 KFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMG 184 (480)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhc
Confidence 99999999999999999999988875532224455 7788999999998888887788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH--HHHHhhHHHH-HHHHHHhcccCCccchhhhcC
Q 009442 174 QGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI--VLMLGALPAL-TTYYWRMKMPETGRYTAIIEG 250 (534)
Q Consensus 174 ~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~--~~~~~~i~~~-~~~~~~~~~~esp~~~~~~~~ 250 (534)
..+|.+++.++...+..... ..++..|-. .|+....... +.....+..+|.|+.......
T Consensus 185 n~LGvavg~llppilV~~~~-----------------~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~ 247 (480)
T KOG2563|consen 185 NPLGVAVGFLLPPILVPSSK-----------------DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ 247 (480)
T ss_pred chHHHHHHhhccceecCCCC-----------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH
Confidence 99999999988887762110 113455665 3443333322 233333344454432100000
Q ss_pred ChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q 009442 251 NAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVH 330 (534)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 330 (534)
...+ + .+..+-.++.... +.+....+.+......+++........+...++..
T Consensus 248 ~~~~---~---------------------~~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~ 300 (480)
T KOG2563|consen 248 AALQ---D---------------------ASFPKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEG 300 (480)
T ss_pred hhhh---c---------------------CcHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCc
Confidence 0000 0 0000011111111 22444555555555666666666554444455555
Q ss_pred cccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q 009442 331 KAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFI-IQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLY 409 (534)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (534)
..++. ......++++++..+.|.+.||.+.-+ ..++......++...+..... .. ...+. +...
T Consensus 301 ~~aG~------------ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~-~~-~~~vi-v~~t 365 (480)
T KOG2563|consen 301 VFAGY------------IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL-FL-GDSVI-VFTT 365 (480)
T ss_pred cccch------------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cC-CceEe-hhhh
Confidence 44444 677778889999999999999987644 444444444444222222111 11 12222 2333
Q ss_pred HHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhH-HHHHHHHHHHHHHHH
Q 009442 410 GLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQH-AVLVLAFTNMLGFCC 488 (534)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 488 (534)
+...+++..+..|+..-+..|..-|..-++..|+.+..+++-+++-.++.+...+..+..++.. .-+.....++++.++
T Consensus 366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l 445 (480)
T KOG2563|consen 366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAIL 445 (480)
T ss_pred HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHH
Confidence 3334444567788999899998666666899999999999988888888888877544333333 344555566666666
Q ss_pred HHhhccCC
Q 009442 489 TFLVTETK 496 (534)
Q Consensus 489 ~~~~~~~~ 496 (534)
..++++..
T Consensus 446 va~~r~~y 453 (480)
T KOG2563|consen 446 VAFFRPDY 453 (480)
T ss_pred HhhhhhhH
Confidence 66664433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=185.88 Aligned_cols=403 Identities=13% Similarity=0.048 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc---
Q 009442 22 VTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG--- 98 (534)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G--- 98 (534)
...+.++...++.+|..........|.+.+++ |++.++++...+...+...+-.+ +|+++||++
T Consensus 25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~l------------g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G 91 (468)
T TIGR00788 25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDL------------GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFG 91 (468)
T ss_pred chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Confidence 33455556667888888444445556666667 99999999999999999999666 999999998
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHH---HHHHH
Q 009442 99 --RKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIA---AVFAM 173 (534)
Q Consensus 99 --rr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~---~~~~~ 173 (534)
||+.++++.++.+ ......++... ++.....+.+++.+++.+...++..++..|..+ +++....+ .....
T Consensus 92 ~rRr~~l~~~~~l~~-~~~~~~l~~~~---~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~ 166 (468)
T TIGR00788 92 YTKRWYLVLSGLLGS-AILYGLLPGKV---SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA 166 (468)
T ss_pred ccchHHHHHHHHHHH-HHHHHhccccc---chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence 7777777776663 22223333220 224444558999999999999999999999998 55544333 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChH
Q 009442 174 QGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAK 253 (534)
Q Consensus 174 ~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~ 253 (534)
.++|.++++.+++.+. +..+||..|++.++..++..+...+++|++.. ..++..+
T Consensus 167 ~~~G~~vg~~l~G~l~-----------------------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~--~~~~~~~ 221 (468)
T TIGR00788 167 SATGGLISSLLGGPLL-----------------------DKTLTRILFLITAALLLLQLFVSNLSKERRAF--VRPRIGT 221 (468)
T ss_pred HHHHHHHHHHHHHHHH-----------------------HhcCcchHHHHHHHHHHHHHHHHHhccccccc--ccccccc
Confidence 4589999999999887 34569999999777766666666678886421 0111000
Q ss_pred HHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcc---cccccccc
Q 009442 254 QAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDI---FPAMGLVH 330 (534)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~ 330 (534)
+........ .... .+..++. -...+..+++ +. ++......+... ........+.+ ....|+++
T Consensus 222 ~~~~~~~~~-~~~~---~~~~~~~-~~~l~~~l~~----~~---i~~~l~fifl~~--~~~~~~~~~~f~~~~~~lG~s~ 287 (468)
T TIGR00788 222 YLEMNMALL-TLGV---LANVKVQ-ILGLRGAIQL----LE---IAKPLIFIFLSY--ANLPGASGSVFCATTQCLPGGP 287 (468)
T ss_pred cchhhhhhh-hhhH---HHHHHHH-HHHHHHHHhc----HH---HHHHHHHHHHHH--hhcCCCCceeEEEEcccCCCCc
Confidence 000000000 0000 0000000 0000111111 11 111111111100 01111111111 12456666
Q ss_pred cccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----chhHHHH
Q 009442 331 KAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN----DNKWLFA 406 (534)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 406 (534)
...+. ......++.+++..+.+++.+|++.|+.+.++.++.+++..........+.. ...+...
T Consensus 288 ~~~G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~ 355 (468)
T TIGR00788 288 SFSGM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL 355 (468)
T ss_pred chhhh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence 66554 6666778899999999999999999999998888887766543321111110 1111111
Q ss_pred HHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccc--cchhHHHH---HHHHH
Q 009442 407 TLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDS--KKIQHAVL---VLAFT 481 (534)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~ 481 (534)
....+.....+....+ ...++.+..|++.+|+.+++.+.+.++|..+++.+.+.+.+..+. ..++..+. +..+.
T Consensus 356 ~~~~l~~~~~g~~~~~-~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~ 434 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMP-FLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLA 434 (468)
T ss_pred ehhHHHHHHHHHHHcc-HHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHH
Confidence 1111222222223333 357889999999999999999999999999999988888774331 12443333 33344
Q ss_pred HHHHHHHHHhhcc
Q 009442 482 NMLGFCCTFLVTE 494 (534)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (534)
.++...+.+++|+
T Consensus 435 ~l~~l~~~~llP~ 447 (468)
T TIGR00788 435 PLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHhCCC
Confidence 4444444445676
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=177.60 Aligned_cols=334 Identities=14% Similarity=0.076 Sum_probs=201.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhc----cchhHH-HHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDK----LGRKKV-YGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G 140 (534)
|++..+.|.+.++..+..++..|+.|+++|| +||||. ++.+.+..+++.++....++.+....+..+++..++.+
T Consensus 41 gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~ 120 (444)
T PRK09669 41 GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLS 120 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 888655 55677777777766666654332244566777777777
Q ss_pred Hhccccccchhhhhhhcc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 141 FGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~-~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
.+.......-.++..|+. ++++|++..+....+..+|..+++.+...+...++. .....+|+.
T Consensus 121 ~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~----------------~~~~~g~~~ 184 (444)
T PRK09669 121 LVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK----------------GDEQKGYFY 184 (444)
T ss_pred HHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHH
Confidence 777777777788999998 568899998988888889988888877666554331 112457998
Q ss_pred HHHHhhHHHHHHHHH-HhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHH
Q 009442 220 VLMLGALPALTTYYW-RMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHL 298 (534)
Q Consensus 220 ~~~~~~i~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
.+.+.++..++..+. .+..+|.++. . ++++.+..+ ..+..++++. +
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e~~~~--~-~~~~~~~~~-----------------------~~~~~~~n~~-------~ 231 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKERYTP--E-VDNSSSVWK-----------------------DLKLLLGNSQ-------W 231 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEecCC--C-CcCCCCHHH-----------------------HHHHHhCCch-------H
Confidence 888766665554433 3334443211 0 000000000 0011111111 1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
+......+...............+.+. .+...+ ..........+..+++.++.+++.||+|+|+.+..
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~-----------~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTRGGATLYYVNY-VLLRPD-----------LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeee-ecCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 111111111111111111111222221 111111 11113444556677888899999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCC-------hhhhhhhhhHHHHHHHhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP-------TRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g 451 (534)
+..+..++...+..... ++.+. ..+..+..+++.....+..+++.+|..+ .+..|...|..+....+|
T Consensus 300 ~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 300 TIVAFVILSALIFFIPP----SNVWL-IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred HHHHHHHHHHHHHHhCc----chHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 77655543332222211 22222 2333333333344455677888888875 233466788888899999
Q ss_pred hhHhhhhhhhhccc
Q 009442 452 AMIGAFVVQSYTLD 465 (534)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (534)
..+++.+.+.+.+.
T Consensus 375 ~alg~~i~g~ll~~ 388 (444)
T PRK09669 375 LAIGGAVVGWILAW 388 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887653
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-18 Score=167.87 Aligned_cols=405 Identities=10% Similarity=0.036 Sum_probs=225.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh-hhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLL-GRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKKVY 103 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~~~ 103 (534)
..++...+...+..+.....+|.. .+++ |++..+.+.+.+.+.....++++++|+++||+ |||+++
T Consensus 12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l------------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i 79 (493)
T PRK15462 12 YYVVALQIWEYFSFYGMRALLILYLTNQL------------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV 79 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence 333434444555555555556554 4445 89999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccc--hhhhHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~i~ 181 (534)
+++.++..++.++++.... +...+.++..+.++|.|...+...+++.|.+|++ +|..+.++.+.+.++|..++
T Consensus 80 liG~il~~lg~lll~~~~~-----~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~ia 154 (493)
T PRK15462 80 MLGALLMAIGHVVLGASEI-----HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIA 154 (493)
T ss_pred HHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHH
Confidence 9999999999887765421 1233444445555667777777889999999975 68999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCc-cchhhhcCChHHHHHHH-
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETG-RYTAIIEGNAKQAASDM- 259 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp-~~~~~~~~~~~~~~~~~- 259 (534)
|.+.+++. +..||++.|.++++..++.++..+...+.. +.....++..+++....
T Consensus 155 p~l~g~L~-----------------------~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 211 (493)
T PRK15462 155 PIACGYAQ-----------------------EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLP 211 (493)
T ss_pred HHHHHHHH-----------------------hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHH
Confidence 99999987 456799999987665444443333221110 00000000000000000
Q ss_pred -H------h-----hhccccchhh-hhhhh---------hcccCcccchhHHHhhhhhhHHHHHH----HHHHHHHHHHH
Q 009442 260 -G------R-----VLDIEIDEEH-DKLSQ---------FKEVNKYPLLSREFFQRHGLHLIGTM----STWFLLDIAFY 313 (534)
Q Consensus 260 -~------~-----~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 313 (534)
. - .......++. ...-. .......+ .++.. |++....+.+. +.|....-...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e-r~r~~~~~~l~~~~~~Fw~~~~Q~~~ 289 (493)
T PRK15462 212 NWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQ-RKELGLIVTLTFFSMLFWAFAQQGGS 289 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHH-HhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0 0 0000000000 00000 00000000 01111 11111111111 11111111112
Q ss_pred Hhhhhhhccccc--ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhh--H-----HHHHHHHHHHH
Q 009442 314 SQNLTQKDIFPA--MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGR--F-----IIQLVGFFMMS 384 (534)
Q Consensus 314 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--~-----~~~~~~~~~~~ 384 (534)
..+.+.....+. .|+.-+ ......+..+..++..++..++=.|..| | .-+.++.++.+
T Consensus 290 sl~lfa~~~vd~~~~g~~ip-------------~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g 356 (493)
T PRK15462 290 SISLYIDRFVNRDMFGYTVP-------------TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMS 356 (493)
T ss_pred HHHHHHHHhccchhcceeeC-------------HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 222222211111 111100 1113445555555555555555455422 1 12667788888
Q ss_pred HHHHHHHHHhhhccc--chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHH-HhhhhHhhhhhhh
Q 009442 385 LFMLIIGIKYDYLKN--DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAG-KAGAMIGAFVVQS 461 (534)
Q Consensus 385 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~~~ 461 (534)
++++++.+....... ..+..++++..++...+.....|+..++++++.|++.++..+|+..... .+|..++..+...
T Consensus 357 ~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 357 AGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777654332211 1233445555555667788888999999999999999999999986643 5666666665554
Q ss_pred hcccc---------cccchhHHHHHHHHHHHHH
Q 009442 462 YTLDE---------DSKKIQHAVLVLAFTNMLG 485 (534)
Q Consensus 462 ~~~~~---------~~~~~~~~~~~~~~~~~~~ 485 (534)
..... +...+...|...+.+.+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 437 TSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 43210 0114556777777666555
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=169.64 Aligned_cols=372 Identities=16% Similarity=0.140 Sum_probs=243.8
Q ss_pred hhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH-HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcccccc
Q 009442 70 PINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY-GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYP 148 (534)
Q Consensus 70 ~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 148 (534)
+..++..++..+-.++..|+.|.++|+-|+||.+ .+...+..+++.+..+... ++++...+.-++.-++.+...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~----~~~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP----GQWWLALVLFIIANVGYEASNV 145 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999999999999987765 5555566667777777533 4466666666666677777788
Q ss_pred chhhhhhhccccchh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 009442 149 LSATIMSEYANKKTR--------------------------GAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFE 202 (534)
Q Consensus 149 ~~~~~i~e~~~~~~r--------------------------g~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~ 202 (534)
...+++.|..+++++ ++..+.-.+...+|.++.-++...+....+..
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~------- 218 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST------- 218 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------
Confidence 899999999999888 89999888888888888877776665322210
Q ss_pred cccccccCCCCCcchHHHHHHhhHH-HHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccC
Q 009442 203 DDEIFSTQPEGDYLWRIVLMLGALP-ALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVN 281 (534)
Q Consensus 203 ~~~~~~~~~~~~~~wr~~~~~~~i~-~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
..+..+-|..+.+.++. .++.+...+++||.|+.. ..++.........++.
T Consensus 219 --------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~~l------------------- 270 (477)
T PF11700_consen 219 --------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFKRL------------------- 270 (477)
T ss_pred --------cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHHHH-------------------
Confidence 01234568888886665 455667777888876520 1111111111111111
Q ss_pred cccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhhcchhH
Q 009442 282 KYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGY 360 (534)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (534)
++.+++. ++.+.+...++.+++..-.......+...+.. ..|++..+... ..++..+.+++|.
T Consensus 271 -~~t~k~~---~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~------------~~l~~~i~a~~Ga 334 (477)
T PF11700_consen 271 -WRTFKEI---RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV------------FGLVVQIVAIIGA 334 (477)
T ss_pred -HHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH------------HHHHHHHHHHHHH
Confidence 0111111 11122444445555544444444444444444 45666554333 6777788999999
Q ss_pred HHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHH--HhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhh
Q 009442 361 WFTVFLIEKIGRF--IIQLVGFFMMSLFMLIIGI--KYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRV 436 (534)
Q Consensus 361 ~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 436 (534)
++.+++.||+|.| +.+..+.++..+..+.-.+ ........+.+.+.+ ..+..+....+.++..-++.+|+.|+++
T Consensus 335 ~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~-~a~~~G~~~G~~qs~sRs~~~~LiP~g~ 413 (477)
T PF11700_consen 335 LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV-LAVLIGLFMGGIQSASRSLFSRLIPPGR 413 (477)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhCCCch
Confidence 9999999999988 7766666555332222221 111000123333333 3333444445567788889999999999
Q ss_pred hhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 009442 437 RSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKGRS 499 (534)
Q Consensus 437 r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (534)
.+..+|+....+...+++||++.+.+.+..+ +.+..+....++.+++.++.+.++..|+++
T Consensus 414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 414 EAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999999999999999999998654 577788888888888888888887665544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-18 Score=166.44 Aligned_cols=374 Identities=15% Similarity=0.183 Sum_probs=226.5
Q ss_pred HHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc-hhHHHHHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG-RKKVYGITLILM 110 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G-rr~~~~~~~~~~ 110 (534)
++...+....+.|..+..-++. ++|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++.
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~------------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~ 78 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESR------------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS 78 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 3444444555566666666655 899999999999999999999999999999986 567777777777
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 009442 111 VICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVS-MILS 189 (534)
Q Consensus 111 ~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~-~~l~ 189 (534)
++........ ++++.+++.-++..+......|...++..+... ++++-.|-.-.+.++|..++.... ..+.
T Consensus 79 ~~~~~~~~~~------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~ 150 (400)
T PF03825_consen 79 ALALLLLAFS------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLG 150 (400)
T ss_pred HHHHHHHHHh------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence 7766666555 558888888888888888888888888888775 233444555566677777665442 2222
Q ss_pred HHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccch
Q 009442 190 KIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDE 269 (534)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (534)
... +..+....+++.+...++.....+.+|+.|.. ...++..+. .
T Consensus 151 ~~~--------------------~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~--~~~~~~~~~-~------------ 195 (400)
T PF03825_consen 151 GYL--------------------GISGTSLIFYIAAILSLLLAGFALFLPKTPPK--RSAKESVKK-L------------ 195 (400)
T ss_pred hhh--------------------ccccccHHHHHHHHHHHHHHHHHHhCCCCccc--cccCCCccc-c------------
Confidence 111 11122345555555555555555567877631 111100000 0
Q ss_pred hhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccccc-ccccccccchhhhHhhhhHHH
Q 009442 270 EHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMG-LVHKAPQVNALREVFETSRAM 348 (534)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 348 (534)
...+..++++++. +....+..+...........+.+.++++.| ..... .+..
T Consensus 196 --------~~~~~~~llk~~~-------~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------------~g~~ 248 (400)
T PF03825_consen 196 --------LGLDALKLLKNPR-------FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------------IGIL 248 (400)
T ss_pred --------cchHHHHHhcCcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------------HHHH
Confidence 0000011122211 111122222222222223344555666655 32222 1225
Q ss_pred HHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHHHhhcCCcceeee
Q 009442 349 FVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLF--ATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 349 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 426 (534)
..+..+..++.....+++.+|+|.|+++.++.+..++=..++..... +..... ..+..+.-+............
T Consensus 249 ~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~----~~~~~~~~~~l~q~lhG~tf~~~~~a~~~ 324 (400)
T PF03825_consen 249 WALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD----PWPFIVALQLLGQLLHGLTFGLFHAASVR 324 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66777889999999999999999999999999998888777776422 111111 111011111111112334557
Q ss_pred cccccCChhhhhhhhhHHHHHH-HhhhhHhhhhhhhhccccccc---chhHHHHHHHHHHHHHHHHHHh
Q 009442 427 LPAELFPTRVRSTCHALSAAAG-KAGAMIGAFVVQSYTLDEDSK---KIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++.+..|++.|+++.++.+... .+|..+|..+.|.+.+..+.. .|...+.+.+++.++..++..+
T Consensus 325 yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 325 YIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999988764 689999999999999854322 2334455555555555555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-17 Score=157.54 Aligned_cols=339 Identities=13% Similarity=0.071 Sum_probs=230.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhh----ccchhHH-HHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGD----KLGRKKV-YGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G 140 (534)
|++....|.+..+.-+--++.-|+.|.++| |+||||. ++++.+..++.+.++-.+++.+...+....++.-.+.+
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999 4888766 56777999999999988886554456777888889999
Q ss_pred Hhccccccchhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 141 FGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
++.......-.++..|+.+ ++||.+..+.-+.+.++|.++...+...+.+.++. .....||+.
T Consensus 124 l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~----------------~~~~~g~~~ 187 (467)
T COG2211 124 LGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG----------------GDKALGYQG 187 (467)
T ss_pred HHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CcchhhHHH
Confidence 9999998888999999986 68899999999999999999998888888877663 123668998
Q ss_pred HHHHhhHHHHHHHHHHh-cccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHH
Q 009442 220 VLMLGALPALTTYYWRM-KMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHL 298 (534)
Q Consensus 220 ~~~~~~i~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
.-++.++.+++..+.++ -.+|.+.. ..+.+ ++.. .+..+.+.....+++ +
T Consensus 188 ~~~~~~vi~~i~~l~~~~~v~ER~~~--~~~~~-~~~~-----------------------~~~~~~~~~~~~Nrp---~ 238 (467)
T COG2211 188 TALVLGVIGVILLLFCFFNVKERVVE--TQPTK-TGVK-----------------------LKLKDSFLLIFKNRP---L 238 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCc--cccCc-cccc-----------------------ccHHHHHHHHHccch---H
Confidence 88887777666555444 45554321 00000 0000 000100111111111 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
...+...++....+.........|.+ ......+. ...........+.+++.++..++.+|+|+|+++.+
T Consensus 239 ~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~~~l----------~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~ 307 (467)
T COG2211 239 LLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGDPEL----------FAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI 307 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeEE-EEcCChHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence 22222333333333322222222222 12211111 11114455556666668899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCC-------hhhhhhhhhHHHHHHHhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP-------TRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g 451 (534)
+.++..++.+.+.+... +...+.++..+..+.+.....++.|++.+|... .+.-|...|...++..+|
T Consensus 308 ~~~~~~i~~~~~~f~~~-----~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g 382 (467)
T COG2211 308 GLLLLAVGYLLLYFTPA-----GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLG 382 (467)
T ss_pred HHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 99988888887777542 444455555455555555667889999998864 344577888999999999
Q ss_pred hhHhhhhhhhhccc
Q 009442 452 AMIGAFVVQSYTLD 465 (534)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (534)
..++..+.++....
T Consensus 383 ~ala~~~~g~~L~~ 396 (467)
T COG2211 383 LALAGFIPGWILGA 396 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877553
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-18 Score=166.47 Aligned_cols=335 Identities=13% Similarity=0.098 Sum_probs=219.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhh----ccchhHHH-HHHHHHHHHHHHHHHhc-c-CCCccchHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGD----KLGRKKVY-GITLILMVICAICSGLS-F-GSSARSVIGTLCFFRFW 138 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----r~Grr~~~-~~~~~~~~i~~~~~~~~-~-~~~~~~s~~~l~~~r~l 138 (534)
++++...|++..+..+-.++..|+.|.++| |+||||.. +++.++.+++.+++... | +.+......++.+.-++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999 89988775 56888888888777766 4 21111234556777888
Q ss_pred HHHhccccccchhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCC-cc
Q 009442 139 LGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGD-YL 216 (534)
Q Consensus 139 ~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (534)
..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+...++. .+. .+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~-----------------~~~~~~ 175 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG-----------------GDTSNG 175 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------------CccchH
Confidence 899999999999999999998 57899999999998999998777777777655442 112 37
Q ss_pred hHHHHHHhhHHHHHHH-HHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhh
Q 009442 217 WRIVLMLGALPALTTY-YWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHG 295 (534)
Q Consensus 217 wr~~~~~~~i~~~~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (534)
|++..++.+++.++.. +..+..+|.++. ..++++ +...++..+..++++..+
T Consensus 176 ~~~~~~v~~iv~~v~~~i~~~~~ke~~~~-----~~~~~~-------------------~~~~~~~~~~~~~nr~~~--- 228 (428)
T PF13347_consen 176 YRWMALVLAIVGLVFFLITFFFVKERSVE-----VTEQEK-------------------KISLRDSLRSLFRNRPFR--- 228 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeeecccc-----cccccc-------------------ccccccchhhhcccchHH---
Confidence 9999988777666544 444456662111 000000 000001112222222211
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHH
Q 009442 296 LHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFII 375 (534)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~ 375 (534)
.++ +..++............+.+.+..-..+.. .........+..+++.++.++++||+|+|+.
T Consensus 229 -~l~---~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 229 -ILL---LAFFLQWLAFALMNTFLPYYFTYVLGNEGL------------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred -HHH---HHHHHHHhhhhhhhhHHHHHHHHHhcCchh------------hHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence 122 222222222222222222222221111111 1114556678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCCh-------hhhhhhhhHHHHHH
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPT-------RVRSTCHALSAAAG 448 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~ 448 (534)
+..+..+.+++.+.+.+... ++.....+..+..+.+........+++.+|+.+. +..|..+|+.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~ 367 (428)
T PF13347_consen 293 YIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI 367 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence 99999999988887777643 2333344444444444445567788888998764 34588889999999
Q ss_pred HhhhhHhhhhhhhhccc
Q 009442 449 KAGAMIGAFVVQSYTLD 465 (534)
Q Consensus 449 ~~g~~~~~~~~~~~~~~ 465 (534)
.++..+++.+.+.+.+.
T Consensus 368 k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 368 KIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988877553
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-18 Score=159.14 Aligned_cols=351 Identities=15% Similarity=0.152 Sum_probs=197.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHH--HHHHHH-HhccCCCccchHHHHHHHHHHHHHh
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMV--ICAICS-GLSFGSSARSVIGTLCFFRFWLGFG 142 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~--i~~~~~-~~~~~~~~~~s~~~l~~~r~l~G~~ 142 (534)
|+|.+++|.+.++..+...+.+++.|.++||+|.||-++..+.+.. .+.... .+.|-.. .+-+...+++-+..|+.
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~-~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ-SNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH-TT-HHHHHHTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997776544333222 222221 1111000 01122223333333444
Q ss_pred ccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHH
Q 009442 143 IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLM 222 (534)
Q Consensus 143 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~ 222 (534)
.....++.-+++.++. ++.+.=.|-.-++.++|.+++..++|.+.+. +-+..||
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i------------------------~p~~~fw 171 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI------------------------NPNIIFW 171 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee------------------------CccHHHH
Confidence 4444455555554443 2334455666778899999999999988742 2356777
Q ss_pred HhhHHHHHHHHHHhc-ccCCccchhhhcCC-hHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHH
Q 009442 223 LGALPALTTYYWRMK-MPETGRYTAIIEGN-AKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIG 300 (534)
Q Consensus 223 ~~~i~~~~~~~~~~~-~~esp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (534)
++...+++..++.+. -|+.++.....+.. .+++...++ ...++++.+ .++.
T Consensus 172 i~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~k~~-------~fw~ 224 (412)
T PF01306_consen 172 IASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLK--------------------DVLSLFKMR-------NFWF 224 (412)
T ss_dssp HHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HH--------------------HHHHHTTSH-------HHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHH--------------------HHHHHhcch-------hHHH
Confidence 766655554444333 33433221011100 000000000 001111121 2333
Q ss_pred HHHHHHHHHHHHHHhh----hhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHH
Q 009442 301 TMSTWFLLDIAFYSQN----LTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQ 376 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~ 376 (534)
..+........|+... .+...++++.+.... .-+.......+..++...+..++.+|+|.|+.+
T Consensus 225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~------------~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L 292 (412)
T PF01306_consen 225 FVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQ------------MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL 292 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChh------------HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH
Confidence 3333222223333332 222333333222221 222267777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHH-HHHHHhhhhHh
Q 009442 377 LVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALS-AAAGKAGAMIG 455 (534)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~~~ 455 (534)
+++..++.+=....++. ++.+....+=.+-..-.... .....-|+.+.+|++..++...+. +....+|.++.
T Consensus 293 llag~i~~iRi~~~~~~------~~~~~i~~~klLH~~e~~l~-lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 293 LLAGVIMAIRIIGSGFA------TNPWVISLIKLLHALEFPLL-LVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp HHHHHHHHHHHHHHHT--------SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877765 23333332222222211111 123446788999999999998885 56778899999
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 456 AFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+.+.|.+.| ..|++.++++.+.+.++..++..+.
T Consensus 366 s~~~G~lyd---~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 366 SPLAGYLYD---RIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHh---hcCcHHHHHHHHHHHHHHHHHheee
Confidence 999999998 6688888988888877777766653
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=158.20 Aligned_cols=331 Identities=11% Similarity=-0.008 Sum_probs=178.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc----chhHHH-HHHHHHHHHHHHHHHhcc-CCCccchHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKL----GRKKVY-GITLILMVICAICSGLSF-GSSARSVIGTLCFFRFWL 139 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~-~~~~~~s~~~l~~~r~l~ 139 (534)
+++..+.|.+.++..+..++..++.|+++||. |||+.. .++.+...+..++....+ ..+.......+++.-++.
T Consensus 40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (448)
T PRK09848 40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL 119 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999996 777765 555555555544432222 111111234455556777
Q ss_pred HHhccccccchhhhhhhccc-cchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcch
Q 009442 140 GFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGII-FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLW 217 (534)
Q Consensus 140 G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 217 (534)
+++.+...+...++..|..+ +++|.+..+.-..+.++|.. ++..++..+....+. ....+|
T Consensus 120 ~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~-----------------~~~~~~ 182 (448)
T PRK09848 120 GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPE-----------------EMVSVY 182 (448)
T ss_pred HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------chhhhH
Confidence 88888888777777777665 46788876666554443322 222222222211110 001112
Q ss_pred HHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhh
Q 009442 218 RIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGL 296 (534)
Q Consensus 218 r~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (534)
.....+.++..++. ++.....||+++. +.++....+ ..+.+++++.
T Consensus 183 ~~~~~~~~v~~~~~~~~~~~~~~e~~~~----~~~~~~~~~-----------------------~~~~l~~n~~------ 229 (448)
T PRK09848 183 HFWTIVLAIAGMVLYFICFKSTRENVVR----IVAQPSLKI-----------------------SLQTLKRNRP------ 229 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEeccCC----CccCCCHHH-----------------------HHHHHhCCch------
Confidence 21112222222222 2223344554321 000000000 0001111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccc-cccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHH
Q 009442 297 HLIGTMSTWFLLDIAFYSQNLTQKDIFPAM-GLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFII 375 (534)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~ 375 (534)
+....+..++....+.......+.+.++. +.++. .+........++.+++.++.+++.||+|+|+.
T Consensus 230 -f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~ 296 (448)
T PRK09848 230 -LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGL------------FTVLVLVQNLVGTVASAPLVPGMVARIGKKNT 296 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 22222223333333333334444444432 22111 11112333345677788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh-------hhhhhhhHHHHHH
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR-------VRSTCHALSAAAG 448 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~ 448 (534)
+..+.++..++.+.+.+... .+.+. ..+..+..+.+.....+..+++..|..|.+ .+|...|+.+...
T Consensus 297 ~~~g~~~~~i~~~~~~~~~~----~~~~~-~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~ 371 (448)
T PRK09848 297 FLIGALLGTCGYLLFFWVSV----WSLPV-ALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR 371 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCc----hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence 99988887777665554211 12222 222222233333334455667777777643 4588999999999
Q ss_pred HhhhhHhhhhhhhhcc
Q 009442 449 KAGAMIGAFVVQSYTL 464 (534)
Q Consensus 449 ~~g~~~~~~~~~~~~~ 464 (534)
.+|..+++.+.+.+.+
T Consensus 372 klg~aig~~i~g~~l~ 387 (448)
T PRK09848 372 KCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=157.08 Aligned_cols=332 Identities=10% Similarity=-0.031 Sum_probs=191.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhc----cchhHHH-HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDK----LGRKKVY-GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr----~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G 140 (534)
+++....|.+..+.-+--++.-|+.|.++|| +|||+.. +++.+..+++.+++...|+.+.......+.+.-++..
T Consensus 41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~ 120 (460)
T PRK11462 41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT 120 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 7997765 5676778877776665553222122455666777778
Q ss_pred Hhccccccchhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 141 FGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
++.......-.++..|..+ +++|.+..+....+..+|..+++.+...+....+. .....+|+.
T Consensus 121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~----------------~~~~~g~~~ 184 (460)
T PRK11462 121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG----------------DNKPLGFQG 184 (460)
T ss_pred HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CchhhhHHH
Confidence 8888888888899999998 78899999999999999998888887666654331 112347888
Q ss_pred HHHHhhHHHHHHHHHHh-cccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHH
Q 009442 220 VLMLGALPALTTYYWRM-KMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHL 298 (534)
Q Consensus 220 ~~~~~~i~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (534)
...+.+++.++.....+ ..+|.++. ++++.. .++.++....++..+.+
T Consensus 185 ~~~i~~ii~~i~~~i~~~~~kE~~~~----~~~~~~---------------------------~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 185 GIAVLSVVAFMMLAFCFFTTKERVEA----PPTTTS---------------------------MREDLRDIWQNDQWRIV 233 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCC----CccCCC---------------------------HHHHHHHHhCChHHHHH
Confidence 77776666555443333 34553221 000000 00001111111111112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
....+..............+...+.. + .+. ..........++.+++.++++++.||+++|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~~~y~~--g-~~~------------~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~ 298 (460)
T PRK11462 234 GLLTIFNILAVCVRGGAMMYYVTWIL--G-TPE------------VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWW 298 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhc--C-ChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 21211221111112222222222211 1 000 01113455567778889999999999999988765
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCC-------hhhhhhhhhHHHHHHHhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP-------TRVRSTCHALSAAAGKAG 451 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~g 451 (534)
+..+..+..+++.+... .+.+.......+ .+++.....++.+++..|..+ .+..|...+..++...+|
T Consensus 299 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg 373 (460)
T PRK11462 299 TNALLAVISLAMFFVPM----QASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLG 373 (460)
T ss_pred HHHHHHHHHHHHHHhch----hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHH
Confidence 54444333332222111 122222222222 222222333445666666654 233355556667888888
Q ss_pred hhHhhhhhhhhcc
Q 009442 452 AMIGAFVVQSYTL 464 (534)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (534)
..+++.+.+.+.+
T Consensus 374 ~alg~~i~g~iL~ 386 (460)
T PRK11462 374 LAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=162.51 Aligned_cols=414 Identities=14% Similarity=0.137 Sum_probs=241.2
Q ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhc
Q 009442 17 TQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDK 96 (534)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr 96 (534)
.++.+|+.+.++.+..++.+....++.+..-...+++ |.+-+.+..|++.++..+|.+++++..|+...|
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l----------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k 97 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL----------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNK 97 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhc----------CCCCCcchhhHHHHHHHHHHHhcchhhcccccc
Confidence 3466788888888888888887766655543333333 347788899999999999999999999999999
Q ss_pred cch-hHHHHHHHHHHHHHHHHH-HhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHH
Q 009442 97 LGR-KKVYGITLILMVICAICS-GLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 174 (534)
Q Consensus 97 ~Gr-r~~~~~~~~~~~i~~~~~-~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 174 (534)
.|. |++++.+.++..+++++. .+... ..++.+.++++|++.|+|.|. ....-+|+++....++|.++++....+.
T Consensus 98 ~~~~k~Pli~s~ii~~~g~llY~~l~~~--~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~ 174 (488)
T KOG2325|consen 98 TGSVKKPLIVSFLIAIIGNLLYLALAYV--PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGF 174 (488)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHH
Confidence 997 888999999999999988 44322 113688999999999999876 5788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCCh
Q 009442 175 GVGIIFAGLVSMILSKIFLQLFPA-PAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNA 252 (534)
Q Consensus 175 ~lG~~i~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~ 252 (534)
.+|.++||.++..+.......... ++.+.| -+-.+-|+.++..++.++ +.+++.|.++. ..+++.
T Consensus 175 vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n-----------~YTap~w~m~i~~i~~~v~i~~~f~E~~~~--~~~~~~ 241 (488)
T KOG2325|consen 175 VLGIILGPTIQLAFTPLGEKGFMILPGLIFN-----------MYTAPAWLMAILWIIYIVIILFFFKEVYRG--IIDKKK 241 (488)
T ss_pred HHHHHHhHHHHHHHhhhcCCceEEcCcceEE-----------ecchHHHHHHHHHHHHHHHHHhheeecccC--cccccc
Confidence 999999999998877433211000 001111 134566777776666443 44567776543 111110
Q ss_pred HHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhhccccccccccc
Q 009442 253 KQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQN-LTQKDIFPAMGLVHK 331 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 331 (534)
++. ++++.+.++ .+..+......+.+.+..+...+.+.... ...+......+|...
T Consensus 242 ~~~------------~~~~~~~~~-----------~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~ 298 (488)
T KOG2325|consen 242 RSV------------EEEKSDIEK-----------VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGS 298 (488)
T ss_pred ccc------------hhhccchhh-----------hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccc
Confidence 000 000000000 00001111123444555555555555433 333333344556554
Q ss_pred ccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-----------
Q 009442 332 APQVNALREVFETSRAMFVVALLGTFPGYWFTVFLI-EKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN----------- 399 (534)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 399 (534)
++.. ..+....+.++..+.-.+...+.. .++.+|..+..+++....+..+..........
T Consensus 299 ~av~--------~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~ 370 (488)
T KOG2325|consen 299 EAVL--------YNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAG 370 (488)
T ss_pred hHHH--------hhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccC
Confidence 4322 111123333333332222222222 23344555555544444444444332221110
Q ss_pred --------------chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccc
Q 009442 400 --------------DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLD 465 (534)
Q Consensus 400 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 465 (534)
.+.+.+...+.+..+...-.......++-+|+..++.+++..|+.......+..++|+.......
T Consensus 371 ~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~- 449 (488)
T KOG2325|consen 371 CDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT- 449 (488)
T ss_pred cCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH-
Confidence 00011111111111111111111233455788999999999999999999999999988877766
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH
Q 009442 466 EDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
..|+++.+.+.++..++...++.
T Consensus 450 --~~g~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 450 --LSGPRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred --hcCccHHHHHHHHHHHHHHHHHH
Confidence 34667666665555554444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=149.39 Aligned_cols=375 Identities=15% Similarity=0.106 Sum_probs=233.5
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHH-HHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcccc
Q 009442 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKV-YGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGD 146 (534)
Q Consensus 68 s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 146 (534)
+....+...++..+-.++-+|+.|.++|+.|+||. +-+...+..++..+..++++. +.++..++.-.+..++....
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~---s~~~~~l~~~il~~i~~~~s 132 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG---SYLLLLLLFLILASIGFEFS 132 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhcchh
Confidence 45678888999999999999999999999997765 455666666677777777652 23556667778889999998
Q ss_pred ccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhH
Q 009442 147 YPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGAL 226 (534)
Q Consensus 147 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i 226 (534)
.+.-.+++.+..++++-++..++-.....+|..+.-+.........+. .. ....-++-+..+...=|..+.+.++
T Consensus 133 ~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~-~~----~~~~l~~l~~~~~~~~ri~~~l~A~ 207 (438)
T COG2270 133 NVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQ-TG----ITIILLGLPPADGEDVRITGLLAAL 207 (438)
T ss_pred heehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccc-cc----eeEEeeccCccccccchhHHHHHHH
Confidence 999999999999998888888776666667766665554322211100 00 0000111112244457888888766
Q ss_pred HHHH-HHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHH
Q 009442 227 PALT-TYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTW 305 (534)
Q Consensus 227 ~~~~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (534)
.-++ .+..++..|+.++- .....+.-....++. ++-++....++. +.......
T Consensus 208 W~li~~iPm~~~v~~~~~~---~~~~~~~l~~g~k~L--------------------~~t~k~i~~~~~---i~~FLiA~ 261 (438)
T COG2270 208 WWLLFALPMILNVHDAEKI---SSPPPTALRNGFKEL--------------------KSTFKEIRGRKN---LVLFLIAR 261 (438)
T ss_pred HHHHHHhHHHhcccccccc---cccchHHHHHHHHHH--------------------HHHHHHHhcccc---hHHHHHHH
Confidence 5444 55566666665431 000001000111100 001111111111 11122222
Q ss_pred HHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009442 306 FLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMS 384 (534)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~ 384 (534)
+...=.......+...+.. +.|++..+... ......+..++|+++.|++.||+|.|+++..+.++..
T Consensus 262 ~~~~DGv~til~~~~~fg~~~~gls~~~lll------------~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 262 FFYIDGVNTILAMGGVFGAADLGLSSTELLL------------IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 2221122222222233333 45565544333 6677778889999999999999999998888887777
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 385 LFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
+..+...... ....+.+.. +..+....+.++..-++..+++|+++-++.+|+++..++..+++||+..+.+.+
T Consensus 330 ~~~~~~~~~~------~~~~f~i~g-ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 330 IAALYLIFLE------GELDFWILG-LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred HHHHHHHHcc------ccHHHHHHH-HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 6655554432 122222222 222222334566777889999999999999999999999999999999999988
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 009442 465 DEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKG 497 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (534)
..+ ..+..+....++.+++.+....+|+.++
T Consensus 403 iTg--~~r~g~~~i~vll~iGl~~L~~v~~~~~ 433 (438)
T COG2270 403 ITG--SSRAGVLSIIVLLLIGLLLLLRVKVPGR 433 (438)
T ss_pred Hhc--chhhHHHHHHHHHHhhHhhEEeecCCCC
Confidence 766 4566677777777777777766665533
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=147.06 Aligned_cols=287 Identities=15% Similarity=0.022 Sum_probs=175.3
Q ss_pred chHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc
Q 009442 127 SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEI 206 (534)
Q Consensus 127 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 206 (534)
++|+.++++-++.|.|.+...+..+.++.+..++|++.+.+++.+...++|..++|.+++.+...........+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~------ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV------ 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh------
Confidence 56999999999999999999999999999999999999999999999999999999999988732110000000
Q ss_pred cccCCCCCcchHHHHHHhhHHHHHHHHHHhc--ccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCccc
Q 009442 207 FSTQPEGDYLWRIVLMLGALPALTTYYWRMK--MPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYP 284 (534)
Q Consensus 207 ~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~--~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (534)
.........|+++|++.+...++..+.+.+ +||..+ ++.++.. + ++. .+.
T Consensus 82 -~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~~~------------~-~~~------~~~-- 133 (310)
T TIGR01272 82 -ATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVARVS------------S-GDT------TQK-- 133 (310)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccccc------------c-ccc------cch--
Confidence 000001246999999654443333333323 344211 0000000 0 000 000
Q ss_pred chhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc---ccccccccccchhhhHhhhhHHHHHHHHhhcchhHH
Q 009442 285 LLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA---MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYW 361 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (534)
+...++ +..+...+..++......+...|.+.|+.+ .++++.+.+. .......+.++|++
T Consensus 134 ---~~~~~~--~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~------------~~s~~~~~~~iGr~ 196 (310)
T TIGR01272 134 ---TSAFQF--THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH------------FTAYTWGGAMVGRF 196 (310)
T ss_pred ---hhHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH------------HHHHHHHHHHHHHH
Confidence 111111 112223334444444444555566666653 2454443333 67777888999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhh
Q 009442 362 FTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCH 441 (534)
Q Consensus 362 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 441 (534)
+++++.||+++|+.+..+..+..++.+++... +...... .+.+ .+++.....|...+...+.+|++ .+++.
T Consensus 197 ~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~------~~~~~~~-~~~l-~g~~~s~i~P~~~s~a~~~~~~~-~~~as 267 (310)
T TIGR01272 197 IGSAVMPMISQGRYLAFNAFLAVLLSIGAALT------HGYVAMW-FVLA-LGLFNSIMFPTIFSLALNALGRH-TSQGS 267 (310)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc------CCHHHHH-HHHH-HHHHHHHHHHHHHHHHHhhhhhh-hhhhH
Confidence 99999999999998887777666655433332 1111111 2222 22333345677777777877764 45666
Q ss_pred hHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHH
Q 009442 442 ALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLV 477 (534)
Q Consensus 442 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (534)
++. .++.+|+.+.|.+.|.+.+ ..+.+.++++
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad---~~g~~~a~~v 299 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLAD---CLGIQLAFAL 299 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHH---hccchHHHHH
Confidence 765 5678999999999999987 3466666653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-15 Score=141.06 Aligned_cols=421 Identities=14% Similarity=0.070 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh-hhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSK-LLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKK 101 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~ 101 (534)
.+..+...-+.+-++.+....++- ++..++. + .+++++++..-+.+.|.--.-+..+++|+++||+ |+|+
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~-------~-gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~ 93 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLG-------D-GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR 93 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc-------c-cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 344455555555555555544443 3333331 1 1468888888888888888888999999999997 9999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccc--hhhhHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~lG~~ 179 (534)
++..+.+++.+|.++.+.+.. .+...+.++-.+.++|.|..=+...+++.|.+|++ +|-..+++++++.++|.+
T Consensus 94 tI~lGail~~iGh~~L~~~~~----~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl 169 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV----SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL 169 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc----ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence 999999999999999998731 13678899999999999999999999999999865 366788899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchh----hhcCChHHH
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTA----IIEGNAKQA 255 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~----~~~~~~~~~ 255 (534)
++|.+.+++. ++.||...|.++++-....++.....+..-.... ....+..+.
T Consensus 170 ~~p~i~~~~~-----------------------~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~ 226 (498)
T COG3104 170 IAPIITGLLA-----------------------INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFL 226 (498)
T ss_pred HHHHHHHHHH-----------------------HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhh
Confidence 9999999998 5667999999988776665555444332110000 000111111
Q ss_pred HHHHH----hhhccc--cchhhhhhhh-------------hccc-Ccccch-hHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 009442 256 ASDMG----RVLDIE--IDEEHDKLSQ-------------FKEV-NKYPLL-SREFFQRHGLHLIGTMSTWFLLDIAFYS 314 (534)
Q Consensus 256 ~~~~~----~~~~~~--~~~~~~~~~~-------------~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (534)
..... ...... .....+.... ..+. ...+.. .+++.....+.++...+.|....-....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ss 306 (498)
T COG3104 227 LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSS 306 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 10000 000000 0000000000 0000 000100 0111111111111222222222111112
Q ss_pred hhhhhhccccc--ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhH-------HHHHHHHHHHHH
Q 009442 315 QNLTQKDIFPA--MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRF-------IIQLVGFFMMSL 385 (534)
Q Consensus 315 ~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-------~~~~~~~~~~~~ 385 (534)
...+....... .|+.-. ....-++..+..++..++..++..|.+++ .-+.++..+++.
T Consensus 307 l~~~a~~~v~~~~~g~~vp-------------~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~ 373 (498)
T COG3104 307 LNLYADRNVNRQIFGFEVP-------------PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGL 373 (498)
T ss_pred HHHHHHHhhcccccceecC-------------HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHH
Confidence 22222221111 111111 11134445555556666666666664432 234566666676
Q ss_pred HHHHHHHHhh-hc--ccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhh
Q 009442 386 FMLIIGIKYD-YL--KNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSY 462 (534)
Q Consensus 386 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~ 462 (534)
+++++..... .. ....+.++++..-+...++.....|+..+++....|+...+..++........+..++..+.+..
T Consensus 374 ~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~ 453 (498)
T COG3104 374 GFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453 (498)
T ss_pred HHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence 6666665522 11 11234455555556666778888899999999999999999999988887777777777666632
Q ss_pred c---ccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 463 T---LDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 463 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
. ...........|..++...++..+..+.+
T Consensus 454 ~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 454 AVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1 11112345567777777776666655543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=143.82 Aligned_cols=405 Identities=12% Similarity=0.144 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
.+.+.++..+.+++....+...+..+.+.| +++.++.|++.+.+-++..+...+..+..-|.-|-+.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~I 165 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRF------------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWI 165 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhc------------CCCCCcceeEeeecccchhhhhHhHHHhccccCcccee
Confidence 344455666777777778888888888888 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc------------------CC--------------------------Cccch--HHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSF------------------GS--------------------------SARSV--IGTLCFFRF 137 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~------------------~~--------------------------~~~~s--~~~l~~~r~ 137 (534)
-+++++++++++++++-. +. ...++ +..++++.+
T Consensus 166 g~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~ 245 (735)
T KOG3626|consen 166 GIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQL 245 (735)
T ss_pred eechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHH
Confidence 999999999999988630 00 00111 236788999
Q ss_pred HHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCcccccccCCCCCcc
Q 009442 138 WLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL-FPAPAFEDDEIFSTQPEGDYL 216 (534)
Q Consensus 138 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 216 (534)
+.|+|....++.+.+|+-|...+++-...+|++.....+|.++|.++++++.+++.+. .+... .+. .|..---.
T Consensus 246 l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~--it~---~DPrWIGA 320 (735)
T KOG3626|consen 246 LLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG--ITP---TDPRWIGA 320 (735)
T ss_pred HhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC--CCC---CCcchhhH
Confidence 9999999999999999999999999999999999999999999999999999877653 11111 110 01111113
Q ss_pred hHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhh
Q 009442 217 WRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGL 296 (534)
Q Consensus 217 wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (534)
|..-|++.+.+.++..+.++++|....- ..++...++.+.. +.+. +..+.+....++.+++.+.....-.++
T Consensus 321 WWlGFLi~g~~~~~~a~p~f~fPk~lp~-----~~~~~~~~~~~~~-k~~~--~~~~~~~~~~~~ikdfp~s~~~ll~N~ 392 (735)
T KOG3626|consen 321 WWLGFLICGALLLFSAVPLFFFPKELPK-----SQKRKRARDLHVL-KTES--GGAKSDKTFGKKIKDFPKSIKRLLSNP 392 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCcc-----ccccchhhhhccc-cccc--ccccCCcchhhhHHHHHHHHHHHhcCc
Confidence 5555666666666777777778765321 1110000010000 0000 000000000111222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh--hH
Q 009442 297 HLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG--RF 373 (534)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~ 373 (534)
.++..++...+....+.+...|.|.|++. +|.++..+.. ....+...+..+|.+++|+++.|+. -|
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~-----------l~G~i~vp~~~~Gi~lGG~iikkfkl~~r 461 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANI-----------LTGSIGVPAAAVGIFLGGLIIKKFKLSAR 461 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHH-----------HhhhhhhhhhhhhhhccceeeeeecccHH
Confidence 46666777777778888888999999865 4555443322 1334444556678889999999974 34
Q ss_pred HHHHHHHHHHHHHHHH---HHHHh--------------------h-h---------------------------------
Q 009442 374 IIQLVGFFMMSLFMLI---IGIKY--------------------D-Y--------------------------------- 396 (534)
Q Consensus 374 ~~~~~~~~~~~~~~~~---~~~~~--------------------~-~--------------------------------- 396 (534)
....+..+...++++. ..+.. . .
T Consensus 462 ~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpCh 541 (735)
T KOG3626|consen 462 GAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCH 541 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhh
Confidence 4444333333333333 21110 0 0
Q ss_pred --------cc------------------c-------------chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhh
Q 009442 397 --------LK------------------N-------------DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVR 437 (534)
Q Consensus 397 --------~~------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 437 (534)
.. . .....+++++.+..+....+.. ..+.++...+|++.|
T Consensus 542 AGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~-p~~~i~LR~V~~e~k 620 (735)
T KOG3626|consen 542 AGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAV-PGMLIVLRCVPPEEK 620 (735)
T ss_pred hCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccC-cceEEEEEccCchhc
Confidence 00 0 0012333344444444444433 345677889999999
Q ss_pred hhhhhHHHHHHH-hhhhHhhhhhhhhccc
Q 009442 438 STCHALSAAAGK-AGAMIGAFVVQSYTLD 465 (534)
Q Consensus 438 ~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 465 (534)
..++|+..++.+ +|.+-+|+++|++.|.
T Consensus 621 s~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 621 SFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 999999998776 6888999999998763
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-15 Score=149.92 Aligned_cols=172 Identities=16% Similarity=0.081 Sum_probs=125.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHH-HHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAIC-SGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+.+..+.++..+...++..+++++.|+++||+|||+++..+.++..++.+. ...... ++...++++|++.|++.+
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS----NVIGLIFAGLLMLAVILN 357 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHH
Confidence 777777888888889999999999999999999999988877654444333 222211 346778889999998877
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
........++.|.+|++.|++.++.......++..++|.+.+++.+.. .+|+.++++.
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----------------------~~~~~~~~~~ 415 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----------------------QNLMMPAYYL 415 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------CCchHHHHHH
Confidence 766777888999999999999999744444555667777777776321 2478777776
Q ss_pred hHHHHHHHHHHhcccCCccchhhh----cCChHHHHHHHHhhh
Q 009442 225 ALPALTTYYWRMKMPETGRYTAII----EGNAKQAASDMGRVL 263 (534)
Q Consensus 225 ~i~~~~~~~~~~~~~esp~~~~~~----~~~~~~~~~~~~~~~ 263 (534)
.+++++.++..+++||+|+|+..+ +++.+|+.+.+.+.+
T Consensus 416 ~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 416 MVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 667777666667789999985221 245566666666665
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=139.00 Aligned_cols=362 Identities=12% Similarity=0.109 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
+.....+-.+..++.........+.....+..+.. ..+....+.-.....+...+.++..|.++||+|||..+
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~-------~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L 95 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQ-------LENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVL 95 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCcc-------chhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhH
Confidence 34444444455555554555555555555432222 11222222222344677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHh--ccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFG--IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
.+..+...+..++..+. -+++++ +.|+. .+.......++++|....++|....++.......+..++
T Consensus 96 ~~~~~~~~l~~~~~~~~--------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~ 164 (463)
T KOG2816|consen 96 LLPLFGTILPALCLLFQ--------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIG 164 (463)
T ss_pred HHHHHHHHHhHHHHHHH--------HHHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999988886 233333 44442 233457788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHH
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMG 260 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~ 260 (534)
|.+++.+.+. .+.-.+|.+..+..++..+ ..+++||+- .+++++.+ ...
T Consensus 165 p~~~~~~~~~-----------------------~~~a~~f~ia~~~~~~~~~y~~~~l~Esl-----~~~~~~~~--~~~ 214 (463)
T KOG2816|consen 165 PALGGYLVKF-----------------------LGIALVFLIAAASGILSLLYMLLFLPESL-----QEKERSDA--TLR 214 (463)
T ss_pred HHHHHHHHHh-----------------------cCchHHHHHHHHHHHHHHHHHhhcccccc-----Cccccccc--ccc
Confidence 9999999853 3467788887777666544 455788873 22222210 000
Q ss_pred hhh--ccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh-hhhccc-ccccccccccccc
Q 009442 261 RVL--DIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNL-TQKDIF-PAMGLVHKAPQVN 336 (534)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~~~~~~~ 336 (534)
+.. ..+..+..+ ..... .+ .+..+..+.+++..+........... ..+.+. ...+|+....+.
T Consensus 215 ~~~~~~~~~~~~~~--------~~~~~-~~---~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~- 281 (463)
T KOG2816|consen 215 ELTPGSLDSSHVAD--------AFQSL-TK---VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD- 281 (463)
T ss_pred ccCCCcccchhhhh--------hhhhh-cc---cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH-
Confidence 000 000000000 00000 01 11111122222222222111111111 122222 235665554332
Q ss_pred hhhhHhhhhHHHHHHHHhhcchhHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 009442 337 ALREVFETSRAMFVVALLGTFPGYWFTV-FLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFF 415 (534)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (534)
+.........++.++.. .+...++.|+....|.....+....+++... .|...... ....
T Consensus 282 -----------~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~------~w~~~~~~-v~~~- 342 (463)
T KOG2816|consen 282 -----------LLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE------TWMMFAAG-VVVA- 342 (463)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc------chhhhHHH-HHHH-
Confidence 44445555555666555 7788889888888998888888888887633 22222111 1111
Q ss_pred hhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccc
Q 009442 416 ANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLD 465 (534)
Q Consensus 416 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 465 (534)
......+...+..+...+++.+|++.++...+..+.++++|.+.+.+...
T Consensus 343 ~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 343 LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 12334566777888889999999999999999999999999998877553
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-17 Score=163.55 Aligned_cols=402 Identities=13% Similarity=0.113 Sum_probs=3.0
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLI 108 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~ 108 (534)
++..+.+..........+..+.+.| ++++++.|++.+.+-++..+..++..++.+|..|-+.+-.+.+
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF------------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~ 76 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRF------------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGAL 76 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHH
Confidence 3334444666667777888899988 9999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHhcc----CC------------------C--------------------c--cchHHHHHHHHHHHHHhcc
Q 009442 109 LMVICAICSGLSF----GS------------------S--------------------A--RSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 109 ~~~i~~~~~~~~~----~~------------------~--------------------~--~~s~~~l~~~r~l~G~~~g 144 (534)
+++++++++++=. .+ . . ..-+..++++.++.|+|..
T Consensus 77 ~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~ 156 (539)
T PF03137_consen 77 LMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGAT 156 (539)
T ss_dssp ---------------------------------------------------------------------------SSS--
T ss_pred HHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcccc
Confidence 9999999887521 00 0 0 0014678899999999999
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCcccccccCCCCCcchHHHHH
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPA--FEDDEIFSTQPEGDYLWRIVLM 222 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wr~~~~ 222 (534)
..+++..+|+-|..++++-+...|++.+...+|.++|.++++.+.+.+.+....+. ... ..++..|-.++|
T Consensus 157 pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i-------~p~dp~WvGAWW 229 (539)
T PF03137_consen 157 PLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGI-------TPSDPRWVGAWW 229 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCC-------CCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999998876543222110 011 112333444444
Q ss_pred ----HhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhh-hhhhcccCcccchhHHHhhhhhhH
Q 009442 223 ----LGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDK-LSQFKEVNKYPLLSREFFQRHGLH 297 (534)
Q Consensus 223 ----~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 297 (534)
+.++..++..+..+++|+.-.. . ++.++++....++..+.+.++..++ .++...+..++..+.....-+++.
T Consensus 230 LGfli~g~~~~l~aipl~~FPk~lp~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~ 306 (539)
T PF03137_consen 230 LGFLICGILLFLSAIPLFFFPKKLPG--T-SERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCC--c-ccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChH
Confidence 4444445545555556654211 1 0000000000000000000000000 000001112222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhh--hHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIG--RFI 374 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~ 374 (534)
++...+..........+...+.|.|++. ++.++..+.. ....+...+..+|.+++|++.+|++ .|.
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~-----------l~G~v~ip~~~~G~llGG~ivkk~kl~~~~ 375 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASL-----------LTGIVSIPGAALGILLGGYIVKKFKLSARG 375 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----------HHhhhhcchhheehheEEEEEEEecCcHHH
Confidence 4555555556666677777888888865 4555444332 1233444567788899999999975 344
Q ss_pred HHHHHHHHHHHHHHH---HHHH-----------hhhc------c--------------------c-----c---hhHHHH
Q 009442 375 IQLVGFFMMSLFMLI---IGIK-----------YDYL------K--------------------N-----D---NKWLFA 406 (534)
Q Consensus 375 ~~~~~~~~~~~~~~~---~~~~-----------~~~~------~--------------------~-----~---~~~~~~ 406 (534)
.+....+...++.+. ..+. ..+. . . . ....++
T Consensus 376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl 455 (539)
T PF03137_consen 376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence 444443333333332 1110 0110 0 0 0 011222
Q ss_pred HHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHH-hhhhHhhhhhhhhcc
Q 009442 407 TLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGK-AGAMIGAFVVQSYTL 464 (534)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~~~~~~ 464 (534)
++..+..++......| .....-..+|+++|+.|.|+...+.+ +|.+-+|+++|.+.|
T Consensus 456 ~~~~~~~~~~~~~~~p-~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVP-STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccc-hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 2222222332333333 33455688999999999999998776 578899999999887
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-12 Score=120.41 Aligned_cols=361 Identities=15% Similarity=0.125 Sum_probs=208.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc-----hhHHHHH-HHHHHHHHHHHHHhccCCC-------ccch-HH-
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG-----RKKVYGI-TLILMVICAICSGLSFGSS-------ARSV-IG- 130 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~~~~~-------~~~s-~~- 130 (534)
++.....+.+.++..+... ..+.+|+.||+.+ ||..+++ +..+...+..+..++...- ..+. .+
T Consensus 11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 7888888888888776554 6899999999999 8877654 5555555555544431000 0011 22
Q ss_pred -HHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 009442 131 -TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFST 209 (534)
Q Consensus 131 -~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 209 (534)
...+.-.+.|+|.+...+...+++.|..|+|+|+++.++...+.-+|.+++..+.+.+.+.+..
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~--------------- 154 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP--------------- 154 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH---------------
Confidence 2345567899999999999999999999999999999999999999999999999888742221
Q ss_pred CCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHH
Q 009442 210 QPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSRE 289 (534)
Q Consensus 210 ~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (534)
..=++.......+..++.++..+ -.|.++. ...+..+++ +. +..+.+++-
T Consensus 155 ----~rL~~v~~~~a~i~~~l~~ia~w-g~E~r~~--~~~~~~~~~---------------~~--------~f~~a~~~~ 204 (403)
T PF03209_consen 155 ----ERLIQVIQGVALIALLLNLIALW-GQEPRRS--RRAAAAERP---------------RP--------PFREAWRQV 204 (403)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH-hcccCCc--ccccCCCCC---------------Cc--------cHHHHHHHH
Confidence 00022222222222223333332 2232211 000000000 00 000011111
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHH
Q 009442 290 FFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIE 368 (534)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 368 (534)
...++.+.+ ....+...+.++.....+..|- +-.|++..+... .......+.++|....+++..
T Consensus 205 ~~~~~a~~f---~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~------------Lta~~~~G~L~G~~~~g~~l~ 269 (403)
T PF03209_consen 205 WASPQARRF---FVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTR------------LTAFWGGGTLLGMLLAGFLLS 269 (403)
T ss_pred HhCCChhHH---HHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhc
Confidence 111111112 1222233345555544443333 334555544332 677777788888888888776
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHH
Q 009442 369 -KIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAA 447 (534)
Q Consensus 369 -~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 447 (534)
|.++++...+++....+++..+...... .+.+.+.....+++ +++........+...++.+++..|..+|.....
T Consensus 270 ~~~~~~~~a~~G~~~~~~~f~lii~a~~~---~~~~~~~~~~~l~G-~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaa 345 (403)
T PF03209_consen 270 RRLGKKRTAALGCLLGALAFALIILAGPL---GSPWLFRPGVFLLG-LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAA 345 (403)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence 5677777788888888877776665442 23333322222222 222112222334556778888889999999998
Q ss_pred HHhhhhHhhhhhhhhcccc-------cccchhHHHHHHHHHHHHHHHHHHh
Q 009442 448 GKAGAMIGAFVVQSYTLDE-------DSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 448 ~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
+.++..++.++.+.+.|.. ...+|..+|.+=++..+++.++...
T Consensus 346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777765531 1235666676666666666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=140.36 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchh
Q 009442 72 NNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSA 151 (534)
Q Consensus 72 ~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 151 (534)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++++ +...+++.+++.|++.++.++...
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------s~~~ll~~~~l~g~~~~~~~~~~~ 670 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------SESAMIALLCLFGGLSIAAWNALD 670 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999988874 367788888999998888889999
Q ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH
Q 009442 152 TIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT 231 (534)
Q Consensus 152 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~ 231 (534)
++++|++|.+.|++++|+..+...+|.+++|.+++.+... +...+|++.++..++.
T Consensus 671 a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~------------------------~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 671 VLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI------------------------TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877631 2456777777777776
Q ss_pred HHHHhcccCCc
Q 009442 232 YYWRMKMPETG 242 (534)
Q Consensus 232 ~~~~~~~~esp 242 (534)
.++.+++||+.
T Consensus 727 ~ll~~~LPET~ 737 (742)
T TIGR01299 727 GLLALKLPDTR 737 (742)
T ss_pred HHHHHhCCCCc
Confidence 66666779873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=116.84 Aligned_cols=136 Identities=25% Similarity=0.353 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhh
Q 009442 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMS 155 (534)
Q Consensus 76 ~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 155 (534)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+. ++++.+.+.+++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------SNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345677889999999999999999999999999999998888887 44888999999999999998999999999
Q ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHH
Q 009442 156 EYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWR 235 (534)
Q Consensus 156 e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~ 235 (534)
|.+|+++|++..++......+|..+++.+++.+. +..+|++.+++.++..++..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-----------------------QFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------------------cccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886 34579999988776666554443
Q ss_pred -hcccC
Q 009442 236 -MKMPE 240 (534)
Q Consensus 236 -~~~~e 240 (534)
+..||
T Consensus 135 ~~~~~~ 140 (141)
T TIGR00880 135 AFLLPE 140 (141)
T ss_pred hhcCCC
Confidence 34454
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=128.63 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=126.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcccc
Q 009442 67 LPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGD 146 (534)
Q Consensus 67 ~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 146 (534)
++..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+....... ..+++.+++.+++.|++.+..
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~--~~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE--YFGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 445778999999999999999999999999999999999999998887776664210 013566788999999999988
Q ss_pred ccchhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 147 YPLSATIMSEYANKKTRGAFIAAVF-AMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 147 ~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
.+....++.|++|+++|+++.++.+ ...++|.++||.+++.+.+..+. ...+||+..|.+.+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~-----------------~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA-----------------YGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-----------------ccCCchHHHHHHHH
Confidence 8888999999999999999999997 67889999999999999865431 12257999999877
Q ss_pred HHHHH-HHHHHhcccCCc
Q 009442 226 LPALT-TYYWRMKMPETG 242 (534)
Q Consensus 226 i~~~~-~~~~~~~~~esp 242 (534)
+..++ .++..++++|+.
T Consensus 389 ~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 66555 444555677763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=128.29 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=119.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+++..+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+. ++.+.+++.+++.+++.|.
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA------HSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHH
Confidence 7888899999888888888999999999999999998877766655554444444 4477788899999888887
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+....+..|..|+ +|+++.++++....+|..+++.+++.+. +..+|+..|++.+
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~-----------------------~~~g~~~~~~~~~ 377 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVA-----------------------EIWNYHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhhHHHHHHHH
Confidence 777778888999984 6999999999999999999999999987 3456999999888
Q ss_pred HHHHHHHHHHhcccC
Q 009442 226 LPALTTYYWRMKMPE 240 (534)
Q Consensus 226 i~~~~~~~~~~~~~e 240 (534)
+..++.++..++.||
T Consensus 378 ~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 378 VMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888887777776665
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-13 Score=128.72 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=120.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+++.+...++..+++++.|+++||+|||+.+.++.++..++.++..+.++ .+...+++..++.|++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~g~ 311 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM----LNDVLFLATVALVFFTWGG 311 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc----chhHHHHHHHHHHHHHhcc
Confidence 778888999999999999999999999999999999999999999888888777643 1233455678889999888
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+....++.|.+|+++|+++.++......+|..+++.+.+.+. +..||++.|++.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----------------------~~~g~~~~f~~~~ 368 (377)
T TIGR00890 312 TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL-----------------------TEIGFEYTFIVTG 368 (377)
T ss_pred chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhchhhHHHHHH
Confidence 88888899999999999999999999999999999999999887 4557999998877
Q ss_pred HHHHHHH
Q 009442 226 LPALTTY 232 (534)
Q Consensus 226 i~~~~~~ 232 (534)
+..++.+
T Consensus 369 ~~~~~~~ 375 (377)
T TIGR00890 369 AFALTSL 375 (377)
T ss_pred HHHHHhc
Confidence 7665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=126.87 Aligned_cols=388 Identities=15% Similarity=0.116 Sum_probs=209.4
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc-----hhHHHHHHHHHHHHHHHHH
Q 009442 43 STVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG-----RKKVYGITLILMVICAICS 117 (534)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~ 117 (534)
....|.+.+++ ++++.+.....+...+...+ .+++|.++|.+- ||+-++++.++..++.+..
T Consensus 10 ~~~~~~l~~~l------------~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~ 76 (433)
T PF03092_consen 10 LAIYPFLKDDL------------GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVL 76 (433)
T ss_pred HHHHHHHHHHc------------CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHH
Confidence 45567777777 99999999988888887765 577899999873 4444666777776666666
Q ss_pred HhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009442 118 GLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYAN--KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL 195 (534)
Q Consensus 118 ~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~ 195 (534)
+..+... .+.....+.-++..+|......++-+++.|... ++.||...+.......+|.+++..+++.+.
T Consensus 77 ~~~~~~~--~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~------ 148 (433)
T PF03092_consen 77 ALLPASE--SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLL------ 148 (433)
T ss_pred Hhccccc--chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh------
Confidence 6654321 346667777788899999999999999999884 334778888888888999999999998887
Q ss_pred CCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhh
Q 009442 196 FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKL 274 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (534)
+..++|..|.+.+++.++..+ ..+..+|.+.. ++.+.. ... +...+......
T Consensus 149 -----------------~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~----~~~~~~---~~~---~~~~~~~~~~~ 201 (433)
T PF03092_consen 149 -----------------DSFGPQGVFLISAALPLLMLIVALFLLEERKVR----PADEVF---SFG---KEEVPCLFGSF 201 (433)
T ss_pred -----------------hcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc----ccchhh---ccc---ccccchhhHHH
Confidence 345578888876665555433 33344442110 000000 000 00000000000
Q ss_pred hhhcccCcccchhHHHhhhhhhHHHHHHH-HHHHHHHHHHHhhhhhhccccc--ccccccccccchhhhHhhhhHHHHHH
Q 009442 275 SQFKEVNKYPLLSREFFQRHGLHLIGTMS-TWFLLDIAFYSQNLTQKDIFPA--MGLVHKAPQVNALREVFETSRAMFVV 351 (534)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (534)
++. -...++.++.+. ++...+ ..++.......... ...++.. .+ .+. ...........+
T Consensus 202 ~~~-~~~l~~~~~~~~-------i~~~~~~~~~~~~~~~~~~~a-~~fy~~~~~~~-gp~--------fs~~f~~~~~~v 263 (433)
T PF03092_consen 202 REQ-LSELWRALQQRA-------IWQPILFFIFFFNLPPSISSA-SSFYFQTDALG-GPH--------FSPSFYGTLSIV 263 (433)
T ss_pred HHH-HHHHHHHHhhhH-------HHHHHHHHHHHHHhccCCCCc-cEEEEEecccc-ccc--------cCHHHHHHHHHH
Confidence 000 001111111111 111111 11110000000000 0011111 11 000 000111113455
Q ss_pred HHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----chhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 352 ALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN----DNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 352 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
..++.++|..+......+..-|+++....++..+..+.-......++. .+.+..+.--.+.-........|.. .+
T Consensus 264 g~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl 342 (433)
T PF03092_consen 264 GSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VL 342 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HH
Confidence 556666666666666566666777666655544333221111111100 1111111111122222223333333 56
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccc-----cchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDS-----KKIQHAVLVLAFTNMLGFCCTFLVTETKG 497 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (534)
.+|+.|+..-|+.+++...+.++|..++..+...+.+..+. .+.....++..++.++...+..++|+.++
T Consensus 343 ~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 343 AARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 78999999999999999999999999888887777654331 13444556666666666666667776544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-12 Score=122.36 Aligned_cols=163 Identities=22% Similarity=0.288 Sum_probs=139.3
Q ss_pred hhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhH-HHHHHHHHHHHH
Q 009442 35 DAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKK-VYGITLILMVIC 113 (534)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~ 113 (534)
............|.+.++.. +.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 187 LSFGYYGLLTYLPLYLQEVL-----------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHhHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444455555554321 678899999999999999999999999999999999 999999999999
Q ss_pred HHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 114 AICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 114 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
.++..+. ++.+.+.+..++.|++.+...+...+++.|..|+++|++.+++......+|..+++.+.+.+.
T Consensus 256 ~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~---- 325 (352)
T cd06174 256 LLLLALA------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL---- 325 (352)
T ss_pred HHHHHHh------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 9998887 448889999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhc
Q 009442 194 QLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMK 237 (534)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 237 (534)
+..+|+..+++.++..++..+..++
T Consensus 326 -------------------~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 326 -------------------DTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred -------------------cccCcchHHHHHHHHHHHHHHHhee
Confidence 4567999999988887776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=127.75 Aligned_cols=147 Identities=9% Similarity=0.041 Sum_probs=121.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.|++.++..++..++.++.|+++||+|||+.+..+.++.+++.++.+++ ++.+.+++.+++.|++.+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------~~~~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------TGPLEVSILKLLHAFEVPF 331 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999999999999999999988888887 4488888999999999888
Q ss_pred cccchhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
..+....++.|.+|++.|+...+. ++....+|.++++.+.+++. +..||+..|.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-----------------------~~~G~~~~f~~~ 388 (420)
T PRK09528 332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-----------------------DSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-----------------------HhhCchHHHHHH
Confidence 777788899999999988877654 56778899999999999988 345799999986
Q ss_pred hHHHHHHH-HHHhcccCC
Q 009442 225 ALPALTTY-YWRMKMPET 241 (534)
Q Consensus 225 ~i~~~~~~-~~~~~~~es 241 (534)
++..++.. +..+..++.
T Consensus 389 ~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 389 GGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 66655443 333344443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-11 Score=111.00 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHH-HHHHHHHHHHHHHhHhHhhhhhccchhH
Q 009442 23 TAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINN-FVIGVALVGTLTGQLFFGWLGDKLGRKK 101 (534)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~lg~~i~~~~~g~l~dr~Grr~ 101 (534)
..+.+|..+++-+ +-|..|.+.+.+.+.+ .|++..|.. -+.-...-.+....++...+.|..|.|+
T Consensus 6 ~~~llc~~gf~~~------frPsEPfl~~yL~~~~-------kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp 72 (412)
T PF01770_consen 6 ITLLLCLFGFFKE------FRPSEPFLTPYLTGPD-------KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP 72 (412)
T ss_pred HHHHHHHHHHHHh------cCCCCccchHHHcCCc-------cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444455544432 2455566555543222 288877764 5666777778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
+++++.+...+...+..+. ++...+-+..++-|++.+. ..+-.+|+--..|+++-.++.+...+..-+|..++
T Consensus 73 viil~~~~~i~t~~lll~~------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 73 VIILQALSYIITWLLLLFG------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888 6699999999999999887 67788999999999998899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccc
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 244 (534)
..+|-.+... +..+++...++......+++++.+++|..++-
T Consensus 146 ~~lgQllvs~---------------------~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 146 SLLGQLLVSF---------------------GGVSYFQLNYISLASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HHHHHHHHHh---------------------cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9998877732 34557888888777777777777788877653
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-10 Score=105.37 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=102.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..|++.+....+...++..++.|.++||+|||+.-+..+++.+++++..-. ++++.++++|++.|++...
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-------~~~~~L~~GRvlgGiaTSL 137 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-------SNYPVLLLGRVLGGIATSL 137 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988875433 4599999999999999999
Q ss_pred cccchhhhh-hhcc----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHH
Q 009442 146 DYPLSATIM-SEYA----NKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIV 220 (534)
Q Consensus 146 ~~~~~~~~i-~e~~----~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~ 220 (534)
.+.+--+++ .|.- |++..+...+... .++..+..+.++.+.+..-+. ...|-..+
T Consensus 138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t---f~~n~~vAI~aGv~a~~l~~~-----------------~~~g~vaP 197 (354)
T PF05631_consen 138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLAT---FFGNGVVAIGAGVVANVLADW-----------------FGFGPVAP 197 (354)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHH---HHHhHHHHHHHhHHHHHHHHH-----------------hCCCCcch
Confidence 888877764 4432 2222233222222 133333444444444433211 11234678
Q ss_pred HHHhhHHHHHHHHHHh-cccCC
Q 009442 221 LMLGALPALTTYYWRM-KMPET 241 (534)
Q Consensus 221 ~~~~~i~~~~~~~~~~-~~~es 241 (534)
|....+..++..++.. ..+|.
T Consensus 198 F~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 8887776666544433 44554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=124.56 Aligned_cols=184 Identities=15% Similarity=0.045 Sum_probs=122.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhh-hhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLL-GRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG 104 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~ 104 (534)
..+++..++............|.. .+++ |++..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~------------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 261 WLLCFANIFLYIVRIGIDNWSPVYAFQEL------------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 333444444444344445556644 4555 889999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH-HHHHHHH
Q 009442 105 ITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV-GIIFAGL 183 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~i~~~ 183 (534)
....+..++..+..+... ++...+.+.+++.|++.............|.+|++.||++.|+.+....+ |..++|.
T Consensus 329 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~ 404 (467)
T PRK09556 329 ACIALALIIFTLGVYQHA----TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKV 404 (467)
T ss_pred HHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhh
Confidence 655444443333222221 34666778888888754443333346677999999999999999888886 7789999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHh
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRM 236 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~ 236 (534)
+.+.+.+...+..+.+ .....+|+..|++..+..++..+..+
T Consensus 405 ~~G~i~~~~~~g~~~~-----------~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 405 GLGMIADPTKNGTPIF-----------GYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHhcccccccccc-----------cccccChHHHHHHHHHHHHHHHHHHH
Confidence 9998873100000000 00145699999887666666544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=122.92 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=118.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...++.++..+. ++.+.+.+.-++.|++.++
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~ 324 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA------PSFAGMLLAGFAAGLFVVG 324 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999888777777766666665 3366777788889988887
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+...+++.|.+|+++|++..++.+....+|..+++.+++.+.+. ..+|...+++..
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~----------------------~~~~~~~~~~~~ 382 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL----------------------GRSTVGVIGASI 382 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc----------------------CCchHHHHHHHH
Confidence 7888899999999999999999999999999999999999988731 224666676666
Q ss_pred HHHHHHHHHHhcc
Q 009442 226 LPALTTYYWRMKM 238 (534)
Q Consensus 226 i~~~~~~~~~~~~ 238 (534)
...++..+..+.+
T Consensus 383 ~~~~~~~~~~~~~ 395 (406)
T PRK11551 383 PVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=121.30 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccch
Q 009442 71 INNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150 (534)
Q Consensus 71 ~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 150 (534)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+. ++.+.+++.+++.|++.+...+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~~~~~~ 323 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------PSPWMALIGAALTGFGFSLVFPAL 323 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666778888999999999999999999999999888888888877776 447778889999999999888888
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH
Q 009442 151 ATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT 230 (534)
Q Consensus 151 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~ 230 (534)
...+.|.+|+++|+++.+++.....+|..+++.+.+.+. +..||+..+++.++..++
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-----------------------~~~g~~~~~~~~~~~~~~ 380 (399)
T PRK05122 324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA-----------------------SWFGYPSIFLAAALAALL 380 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHcCHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999988887 345699999987777777
Q ss_pred HHHHHhcccC
Q 009442 231 TYYWRMKMPE 240 (534)
Q Consensus 231 ~~~~~~~~~e 240 (534)
..+..+.+++
T Consensus 381 ~~~~~~~~~~ 390 (399)
T PRK05122 381 GLALTWLLYR 390 (399)
T ss_pred HHHHHHHhcc
Confidence 6655555544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=125.50 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=97.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.....+ .+.+.+.+..++.+....+
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 382 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG----ANVWVLGLLLFFQQMLGQG 382 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999988887777666554444322 3344555555655544444
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
..+....++.|.+|+++|++.+++......+|..++|.+++.+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 383 ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999999999999887
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-12 Score=123.47 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHH
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGF 380 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~ 380 (534)
..+.++...+..+......|.+.++.|+++.+.+. ......++..++.++.|++.||+|||+.+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~ 95 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGL------------LATLFYITYGVSKFVSGIVSDRSNARYFMGIGL 95 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence 33444444444445556677777777776554433 667777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhh
Q 009442 381 FMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 460 (534)
++.+++.+..... ++.+.......+ .++......+....+..|.+|+++|++++|+.+....+|..+++.+.+
T Consensus 96 ~~~~~~~~~~~~~------~~~~~l~~~~~l-~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 168 (434)
T PRK11663 96 IATGIINILFGFS------SSLWAFALLWVL-NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG 168 (434)
T ss_pred HHHHHHHHHHHHH------hHHHHHHHHHHH-HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887766653 222322222222 222222234556678899999999999999999999999999999999
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 461 SYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
.+.+ ..+|++.|.+.+++.++..+... +++|+
T Consensus 169 ~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 169 AIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8876 45899999888776665544433 45553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=119.99 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccch
Q 009442 71 INNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150 (534)
Q Consensus 71 ~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 150 (534)
..+.+.++..++..++.++.|+++||+|||+.+..+..+..++.+...+. ++.+.+++.+++.|++.+...+..
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~ 332 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------QTPLQLGILRFLLGAADGALLPAV 332 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhHhhHHHH
Confidence 35667777888889999999999999999999999988888877777766 347888899999999999988998
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH
Q 009442 151 ATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT 230 (534)
Q Consensus 151 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~ 230 (534)
.+++.+..|+++||+.++++.....+|..++|.+++.+. +..||+..|++.++..++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-----------------------~~~g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-----------------------ANYGFRAVFLVTAGVVLF 389 (408)
T ss_pred HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH-----------------------hhcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 456799999998877776
Q ss_pred HHHHHh
Q 009442 231 TYYWRM 236 (534)
Q Consensus 231 ~~~~~~ 236 (534)
..+..+
T Consensus 390 ~~~~~~ 395 (408)
T PRK09874 390 NAVYSW 395 (408)
T ss_pred HHHHHH
Confidence 555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.4e-12 Score=124.10 Aligned_cols=140 Identities=8% Similarity=0.108 Sum_probs=112.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc--chhHHHHH--HHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKL--GRKKVYGI--TLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGF 141 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 141 (534)
+.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++..+. ++++.+++.+++.|+
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~~~i~~~~~G~ 345 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA------GDYTGLVIYCIFFGL 345 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHH
Confidence 88899999999999999999999999999983 34443333 334444444555555 458888999999999
Q ss_pred hccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHH
Q 009442 142 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL 221 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~ 221 (534)
+.+...+...+++.|.+|++++++..+++.....+|.+++|.+++.+.+.. .+|+..|
T Consensus 346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----------------------g~~~~~f 403 (455)
T TIGR00892 346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT----------------------KNYKYIF 403 (455)
T ss_pred HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc----------------------CCcchHH
Confidence 999988999999999999999999999999999999999999999886321 1499999
Q ss_pred HHhhHHHHHHHH
Q 009442 222 MLGALPALTTYY 233 (534)
Q Consensus 222 ~~~~i~~~~~~~ 233 (534)
++.++..++..+
T Consensus 404 ~~~~~~~li~~~ 415 (455)
T TIGR00892 404 YASGSIVVSAGL 415 (455)
T ss_pred HHhhHHHHHHHH
Confidence 887776555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=117.33 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=119.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+++.+.......++.++.|++.||+|||+++.++.++..+..+...+. ++.+.+++.+++.|++.+.
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------NSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 7888899998888877788889999999999999999888777666655555555 4477788889999999888
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+....++.|..|+ +|+++.+++.....+|..+++.+++.+. +..||+..|++.+
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~-----------------------~~~g~~~~~~~~~ 360 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA-----------------------ERWSYHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhccchhHHHHHH
Confidence 888888899998875 5679999999999999999999999887 3456999999988
Q ss_pred HHHHHHHHHHhcccC
Q 009442 226 LPALTTYYWRMKMPE 240 (534)
Q Consensus 226 i~~~~~~~~~~~~~e 240 (534)
+..++..+...+++|
T Consensus 361 ~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 361 VMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHheecC
Confidence 877777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-12 Score=123.24 Aligned_cols=181 Identities=11% Similarity=-0.012 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
++...+.+.+............+.+.++.+++..+.+. ......++..++.++.|++.||+|||+.+.
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~ 77 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGL------------AATLFYAAYVICGIPSNIMLAIIGARRWIA 77 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHhChHHHHH
Confidence 33344444444444445555556566677776655443 667777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+.++..++.+...+. ++.+ .+.+.-+..+.+..+..+....++.|.+|+++|+++.++.+....+|..+++.
T Consensus 78 ~~~~~~~~~~~~~~~~------~~~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 150 (412)
T TIGR02332 78 GIMVLWGIASTATMFA------TGPE-SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI 150 (412)
T ss_pred HHHHHHHHHHHHHHHh------cCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777664 2222 23333333333344445666677899999999999999999999999999999
Q ss_pred hhhhhccc---ccccchhHHHHHHHHHHHHHHHHHH-hhccCCC
Q 009442 458 VVQSYTLD---EDSKKIQHAVLVLAFTNMLGFCCTF-LVTETKG 497 (534)
Q Consensus 458 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 497 (534)
+.+.+.+. .+..+|++.|.+.++..++..++.+ ++||+++
T Consensus 151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 98877532 1234899999998877766555444 5677653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-12 Score=125.93 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHH
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGF 380 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~ 380 (534)
..+.++.............|.+.++.+.++.+.+. ......++.+++.++.|+++||+|||+.+..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGF------------LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 33344444444455555666666666665443332 566677788899999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhh
Q 009442 381 FMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 460 (534)
++..++.++.... .+.....+..+..+++.....+...++..|.+|++.|+++.++.+....+|..+++.+.+
T Consensus 90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 90 LLFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 8887777666543 222333333334444444455667788899999999999999999999999999999998
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 461 SYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
.+.+ ..+|+..+.+.+++.++..++.+ ++||+.
T Consensus 163 ~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhh---cccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 8876 44788888877655555444443 556653
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-11 Score=117.31 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchh
Q 009442 72 NNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSA 151 (534)
Q Consensus 72 ~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 151 (534)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+. ++.+.+++.+++.|++.+...+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~ 324 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------PTAWVALAGAALTGAGCSLIFPALG 324 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566677888889999999999999999999999999888888887776 3477788899999999998888888
Q ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH
Q 009442 152 TIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT 231 (534)
Q Consensus 152 ~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~ 231 (534)
+.+.|.+|+++||++.++++....+|..+++.+.+.+.+ ..||+..|.+.++..++.
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-----------------------~~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 325 VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-----------------------SFGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhCchHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999883 456999999987776665
Q ss_pred HHHHh
Q 009442 232 YYWRM 236 (534)
Q Consensus 232 ~~~~~ 236 (534)
.+...
T Consensus 382 ~~~~~ 386 (392)
T PRK12382 382 IIVTI 386 (392)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-11 Score=114.77 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=112.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHH-HHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAIC-SGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+.+..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++... .... ++.+.+++..++.|++.+
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~------~~~~~~~~~~~l~g~~~~ 309 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA------NSEWHLSVLSIFWGIAIM 309 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999988754 444444444333 3333 447788889999999988
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
...+...+.+.|..| ++|+++++++.....+|..+|+.+++.+. ++.|++..|++.
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~-----------------------~~~g~~~~~~~~ 365 (390)
T PRK03545 310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS-----------------------LHLGLSSIGYVG 365 (390)
T ss_pred cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccChhHHHHHH
Confidence 777777888888876 68899999999999999999999999998 567899999998
Q ss_pred hHHHHHHHHHHh
Q 009442 225 ALPALTTYYWRM 236 (534)
Q Consensus 225 ~i~~~~~~~~~~ 236 (534)
++..++..+...
T Consensus 366 ~~~~~~~~~~~~ 377 (390)
T PRK03545 366 AALALAALVWSI 377 (390)
T ss_pred HHHHHHHHHHHH
Confidence 877766555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=121.72 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+....+.++...+..+......+.+.++.+.++.+.+. ......++..++.++.|++.||+|||+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 81 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAAS------------LISAALISRWFGALMFGLWGDRYGRRLPMV 81 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44455556666666666666677777777776665443 667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+.++..++.+..... .+.+. +.+..+..+.+.....+...+++.|.+|+++|+++.++.+....+|.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~------~~~~~-l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 82 TSIVLFSAGTLACGFA------PGYIT-MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHHHHHHHHHh------ccHHH-HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9888888777666553 12222 3333333333333445566678899999999999999999999999999999
Q ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 009442 458 VVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (534)
+.+.+.+..+ .+|+..+.+.++..++..+....+||++
T Consensus 155 l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 155 VYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 8888765321 2488888776655555544444556643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-11 Score=116.65 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=121.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
|.+..+.|++.+...++..++.++.+++.||.++++.+..+..+.+++.++..+. ++.+.+.++.++.|++.+.
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------PMWILAVLCLALFGYLSAI 328 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999888888888888888887777766 4477778888999998887
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..+...+++.|..|++.||++++++.....+|..+++.+.+.+.+ ..|++..+++.+
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~-----------------------~~g~~~~~~~~~ 385 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA-----------------------MMTPVASASASG 385 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-----------------------HhchhhHHHHHH
Confidence 777778899999999999999999999999999999999999984 345777776644
Q ss_pred H-HHHHHHHHHhcccCC
Q 009442 226 L-PALTTYYWRMKMPET 241 (534)
Q Consensus 226 i-~~~~~~~~~~~~~es 241 (534)
. ..++..+....+||.
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 386 FGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 4 444455555556664
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=114.44 Aligned_cols=175 Identities=11% Similarity=0.157 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHH
Q 009442 296 LHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFII 375 (534)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~ 375 (534)
..++...+.+...-+.--.++.-.|.+.++.+++..+.+. +.+...+..-++..+.|.++||.+.|..
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~------------i~s~f~i~YG~sKf~~G~~sDr~npr~f 96 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGI------------LGSAFSITYGVSKFVMGVLSDRSNPRYF 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHhhhhcccCCCcee
Confidence 3344444444444334444555667777776666655444 6777778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHh
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIG 455 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~ 455 (534)
+.+++++++++.+++++. ++.+.+.++..+-+.+.+.++ |.+...+..-+|+++||+..++-|...++|+.+.
T Consensus 97 m~~gLilsai~nil~Gfs------~s~~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~ 169 (448)
T COG2271 97 MAFGLILSAIVNILFGFS------PSLFLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALA 169 (448)
T ss_pred ehHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence 999999999999999985 233344444444455555554 5566778899999999999999999999999999
Q ss_pred hhhh--hhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 456 AFVV--QSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 456 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
|.+. +.+.. ..+|+..|++-++++++..++.+++
T Consensus 170 ~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 170 PLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred HHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9988 66665 4589999999999988877776654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-12 Score=123.41 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=114.7
Q ss_pred hhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009442 318 TQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYL 397 (534)
Q Consensus 318 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (534)
..|.+.++.|.++.+.+. ......++..++.++.|+++||+|||+.+..+.++..++.......
T Consensus 16 ~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---- 79 (399)
T TIGR00893 16 AAPMLQEDLGLSAAQYGY------------VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---- 79 (399)
T ss_pred hHHHHHHhhCCChhhHHH------------HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH----
Confidence 334444555665554433 6777788889999999999999999999999888888777776654
Q ss_pred ccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHH
Q 009442 398 KNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLV 477 (534)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (534)
.+ .....+..+..+.+.....+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+ ..+|++.+.+
T Consensus 80 --~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~ 153 (399)
T TIGR00893 80 --GA-YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWAFII 153 (399)
T ss_pred --cC-HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHHHHH
Confidence 22 23333333333333444556677888999999999999999999999999999999988766 4478888888
Q ss_pred HHHHHHHHHHHHHh-hccCC
Q 009442 478 LAFTNMLGFCCTFL-VTETK 496 (534)
Q Consensus 478 ~~~~~~~~~~~~~~-~~~~~ 496 (534)
.+++.++..+..++ .||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHHhhheecCCC
Confidence 88777766665554 45543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=118.39 Aligned_cols=172 Identities=12% Similarity=0.018 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHH
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGF 380 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~ 380 (534)
+.+..+......+......|.+.++.|+++.+.+. ......++..++.++.|++.||+|||+.+..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~ 92 (394)
T PRK10213 25 VAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQ------------SVTVTAFVAMFASLFITQTIQATDRRYVVILFA 92 (394)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 33333333334444444566676777776655443 556677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhh
Q 009442 381 FMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 460 (534)
++.+++.+..... ++.+.+.+ .-+..++......+....++.|.+|+++|+++.++......+|..++|.+.+
T Consensus 93 ~~~~~~~~~~~~~------~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 93 VLLTLSCLLVSFA------NSFSLLLI-GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHHHHHHHHHH------ChHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877766553 23333333 2233333333345666778899999999999999999999999999999999
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHH-hhcc
Q 009442 461 SYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTE 494 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 494 (534)
.+.+ ..+|++.|.+.+++.++..+... .+||
T Consensus 166 ~l~~---~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 166 FLGE---LIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHh---hcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9886 45899999887776665544433 2454
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=114.28 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=113.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+++.+...++..+++++.|++.||+|||+++..+..+.+++.+... . ........++.|++.+.
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~--------~~~~~~~~~l~g~~~~~ 301 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S--------QAAMAPALFILGAAGFT 301 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h--------hHHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999999999888888777665443 1 22334567788887777
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
..|...+++.|..|+++++...+.+....++|.+++|.+++++.+ +.+|++.|.+.+
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~-----------------------~~g~~~~f~~~~ 358 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ-----------------------NYSDNLLFIMIA 358 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhCccHHHHHHH
Confidence 789999999999998888888888888899999999999999883 456899998877
Q ss_pred HHHHHHHHHHh
Q 009442 226 LPALTTYYWRM 236 (534)
Q Consensus 226 i~~~~~~~~~~ 236 (534)
...++..+..+
T Consensus 359 ~~~l~~~~~~~ 369 (381)
T PRK03633 359 SVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHH
Confidence 76665554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=113.63 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=109.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
|.+..+.|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++ ++.+.+++.+++.|++.+.
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~q~l~g~~~~~ 309 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EAFPLIFLLQILHCGTFAV 309 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998887 5589999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVF-AMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~i~~~~~~~l~~ 190 (534)
..+....++.+. |+++|++..+++. ...++|..+++.+++.+.+
T Consensus 310 ~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 310 CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 9899999999986 5678999999999999983
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=118.97 Aligned_cols=183 Identities=17% Similarity=0.106 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH
Q 009442 25 IVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG 104 (534)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~ 104 (534)
+....+..+.............|.+.+++ +.+..+.++......++..++.++.|+++||+|||+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 353 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENA------------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL 353 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHc------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333333333333333445566666665 777788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc---cCCCc--cchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 105 ITLILMVICAICSGLS---FGSSA--RSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 105 ~~~~~~~i~~~~~~~~---~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
.+.++.+++.++.++. ..... ..+...+....++.+.......+....++.|.+|+++|+++.++......+|.+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~ 433 (481)
T TIGR00879 354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF 433 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 9888888887776631 11000 002333333333333333333466777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHH-hcccCCc
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWR-MKMPETG 242 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp 242 (534)
+++.+.+.+. ++.+|++.|++.++.+++..+.. ++.||++
T Consensus 434 i~~~~~~~~~-----------------------~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 434 IVGFLFPTML-----------------------ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHH-----------------------HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 9999988877 34569998888777666654444 4556653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=113.11 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=109.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+......+.....+...++.++.|+++||+|||+++..+.++..++.+........ .++...+++..++.|++.+.
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA--QSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHH
Confidence 6666665555666667778889999999999999999888877666554433332100 02344555566777888887
Q ss_pred cccchhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVF-AMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
..+...+++.|.+|++.|+...++.. .+..+|..++|.+.+++.+.. ..+|+.++.+.
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---------------------~~~~~~~~~~~ 418 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---------------------GGSWHSVAIYL 418 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---------------------CCCchHHHHHH
Confidence 78888999999999999988888854 445588889999988887321 22488888877
Q ss_pred hHHHHHHHHHHhcccCC
Q 009442 225 ALPALTTYYWRMKMPET 241 (534)
Q Consensus 225 ~i~~~~~~~~~~~~~es 241 (534)
++..++..+..+.++|+
T Consensus 419 ~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 419 LAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 77777766666666664
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=115.45 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=115.9
Q ss_pred HHHhhhhhh-cccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 009442 312 FYSQNLTQK-DIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLII 390 (534)
Q Consensus 312 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~ 390 (534)
........+ .+.++.+.++.+.+. ......++..++.++.|+++||+|||+.+..+.++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGL------------LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHH------------HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 333334444 444566666655443 6777778889999999999999999999999999888884444
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc
Q 009442 391 GIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK 470 (534)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 470 (534)
.+. .+.+ ...+..+..+.+.....+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+ ..+
T Consensus 80 ~~~------~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~ 149 (352)
T PF07690_consen 80 AFA------SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFG 149 (352)
T ss_dssp HHH------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCH
T ss_pred hhh------hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccc
Confidence 432 2334 334444444444444566777889999999999999999999999999999999999886 457
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 009442 471 IQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~ 490 (534)
|+..+++.+++.++..++..
T Consensus 150 ~~~~~~~~~~~~~~~~il~~ 169 (352)
T PF07690_consen 150 WRWAFLISAILSLIAAILFI 169 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHh
Confidence 88899999998888877543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-10 Score=112.27 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHH-HHHHHHHHHHH
Q 009442 37 YDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYG-ITLILMVICAI 115 (534)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~ 115 (534)
..........|.+.+++ +.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+
T Consensus 236 ~~~~~~~~~~p~~~~~~------------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~ 303 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAEL------------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTL 303 (402)
T ss_pred HHHHHHHHHHHHHHHHc------------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 33344455667666666 888889999999999999999999999999999988764 33444444444
Q ss_pred HHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009442 116 CSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL 195 (534)
Q Consensus 116 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~ 195 (534)
...+.+... .++++.+++..++.|++.+...+ ....+.|..| ++|+++.++.+....+|..++|.+++.+.
T Consensus 304 ~l~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~------ 374 (402)
T TIGR00897 304 ALYYIPQHF-GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI------ 374 (402)
T ss_pred HHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 433321100 03467777888899998877544 4556677654 68999999999999999999999999988
Q ss_pred CCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcc
Q 009442 196 FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKM 238 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~ 238 (534)
+..||+..+++.++..++..+...++
T Consensus 375 -----------------~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 375 -----------------GFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred -----------------hhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999998887777766555544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=119.97 Aligned_cols=160 Identities=9% Similarity=0.051 Sum_probs=112.8
Q ss_pred HhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009442 314 SQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIK 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 393 (534)
......|.+.++.|+++.+.+. ......++..++.++.|+++||+|||+.+..+.++..++.++....
T Consensus 13 ~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSKTDLGL------------LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhhhhHHHHHHhCCCHhHHHH------------HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 3334445555555666554433 6777778888999999999999999999999998888887777664
Q ss_pred hhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh-hhhhhcccccccchh
Q 009442 394 YDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF-VVQSYTLDEDSKKIQ 472 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 472 (534)
.+.+ ...+..+..+++.....+...++..|.+|+++|+++.++.+....+|..+++. +.+.+.+ ..+|+
T Consensus 81 ------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~ 150 (379)
T TIGR00881 81 ------TSLW-VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWH 150 (379)
T ss_pred ------hhHH-HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCch
Confidence 2223 33333333344344455677788899999999999999999999999999994 5554443 34788
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccC
Q 009442 473 HAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
..+.+.+++.++..+..+ +.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCCC
Confidence 888887777666555544 44554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-11 Score=117.36 Aligned_cols=173 Identities=12% Similarity=0.028 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHH
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVG 379 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~ 379 (534)
+....++.....+....+.+.+++ +.|++..+.+. ......++.+++.++.|+++||+|||+.+..+
T Consensus 12 l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~ 79 (395)
T PRK10054 12 LLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGY------------AMTIALTIGVVFSLGFGILADKFDKKRYMLLA 79 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHH
Confidence 334444455555555555555554 45776655443 56666677888899999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhh
Q 009442 380 FFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVV 459 (534)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 459 (534)
.++..++.+.+.+. ++.+.......+.. .......+...++..|..|++.|+++.|+.+...++|..++|.+.
T Consensus 80 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 80 ITAFASGFIAIPLV------NNVTLVVLFFALIN-CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666553 22332322222222 222223455667778999999999999999999999999999999
Q ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 460 QSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
+.+.+ .+|+..|.+.+++.+++.+... ++|+.+
T Consensus 153 ~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 153 TLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98764 2788888888877777655544 355543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=117.68 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=116.8
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009442 310 IAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLI 389 (534)
Q Consensus 310 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~ 389 (534)
..........|.+.++.+.++.+.+. ......++..++.++.|++.||+|||+.+..+.++..++.+.
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQM------------TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333334455556666665544333 667777888899999999999999999999988888877776
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccccc
Q 009442 390 IGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSK 469 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (534)
.... ++.+ ...+..+..+.+.....+...++..|.+|+++|+++.++.+....+|..+++.+.+.+.+ ..
T Consensus 87 ~~~~------~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~ 156 (385)
T TIGR00710 87 LALS------NNIE-TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---WL 156 (385)
T ss_pred HHHH------ccHH-HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc
Confidence 6553 2222 233333333333333345566788999999999999999999999999999999998776 45
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-hccCC
Q 009442 470 KIQHAVLVLAFTNMLGFCCTFL-VTETK 496 (534)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 496 (534)
+|+..+.+.+++.++..+..++ .||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 157 SWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7888888887777766665553 45543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-11 Score=121.17 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHH
Q 009442 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVG 379 (534)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~ 379 (534)
.+.+..+...+.........|.+.++.|.++.+.+. ......++.+++.++.|++.||+|||+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQW------------VITSYMLANAISIPLTGWLAKRFGTRRLFLIS 73 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH------------HHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHH
Confidence 344444444455555566677777777776655443 66777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhh
Q 009442 380 FFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVV 459 (534)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 459 (534)
.++..++.++.... ++...+.+..+..+++.....+...+++.|.+|++.|+++.++......+|..++|.+.
T Consensus 74 ~~~~~~~~~~~~~~-------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 74 TFAFTLGSLLCGVA-------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHHHHHHHHHHhCc-------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 88888877766653 22333333334444444445566778889999999999999999999999999999999
Q ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 460 QSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
+.+.+ ..+|++.|++.+.+.++..++.+ ++|+++
T Consensus 147 ~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 147 GWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 98876 45888888888777776666555 346543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-11 Score=115.61 Aligned_cols=143 Identities=16% Similarity=0.092 Sum_probs=108.0
Q ss_pred HHHhhhhHHHHHHHHhhhh-hhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHH
Q 009442 32 FFTDAYDLFCISTVSKLLG-RLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILM 110 (534)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 110 (534)
.+.............|.+. +++ +.+..+.+.+.+...++..++.++.|+++||+|||+.+.....+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTL------------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3343444444455566555 444 788889999999999999999999999999999999877655544
Q ss_pred HHHHH--HHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 009442 111 VICAI--CSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAA-VFAMQGVGIIFAGLVSMI 187 (534)
Q Consensus 111 ~i~~~--~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~i~~~~~~~ 187 (534)
.+..+ +..+... ++.+.+++..++.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.
T Consensus 296 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 296 ALLAVPLLMALLDS----GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 44332 2222211 3366777888999999888889999999999999999999987 455667889999999999
Q ss_pred HHH
Q 009442 188 LSK 190 (534)
Q Consensus 188 l~~ 190 (534)
+.+
T Consensus 372 l~~ 374 (394)
T TIGR00883 372 LVA 374 (394)
T ss_pred HHH
Confidence 884
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=116.25 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh-hhHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI-GRFII 375 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~ 375 (534)
++.++...+...+.+|+...+.+.++.+ .|+++.+.+. ..........++.+++|+++||+ |||+.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~------------i~~~~~~~~~l~~ligG~LaDRilGrrr~ 78 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYE------------LFSAYCSLVYVTPILGGFLADKVLGNRMA 78 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 4445555566677888888888887754 4555443322 55666677778889999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh--hhhhhhhHHHHHHHhhhh
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR--VRSTCHALSAAAGKAGAM 453 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~ 453 (534)
+.++.++..++.+++..... ........+..+. .+.....+...++..|.+|++ .|+++.++.....++|+.
T Consensus 79 iliG~il~~lg~lll~~~~~----~~~~~~l~l~li~--iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~ 152 (493)
T PRK15462 79 VMLGALLMAIGHVVLGASEI----HPSFLYLSLAIIV--CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI 152 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHH--HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH
Confidence 99999988888765543211 1111111111111 112222344557889999875 799999999999999999
Q ss_pred HhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 454 IGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++|.+.+.+.+ ..||+..|.+.++..+++.+..++
T Consensus 153 iap~l~g~L~~---~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 153 IAPIACGYAQE---EYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHHHHh---hhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976 458899998876655555544433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-10 Score=98.86 Aligned_cols=184 Identities=16% Similarity=0.117 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchh
Q 009442 21 HVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRK 100 (534)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr 100 (534)
||..+..........| ..+.++...|++++.+ |+|.+|...+.+.-.+|..+| ++.|.+.||+|+|
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l------------~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~ 66 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRL------------GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW 66 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHh------------CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH
Confidence 3555555555555544 3456677788888888 999999999999999999875 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc-chHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 101 KVYGITLILMVICAICSGLSFGSSAR-SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
.++.++.+...+|..+..++.+.... .++|.+.+..++.|.+.+...+.+.....+.+| ++||++.|+.-...+++..
T Consensus 67 ~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaa 145 (250)
T PF06813_consen 67 VVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAA 145 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHH
Confidence 99999999999999988877554332 357888888888888877777777777888898 6899999999999999888
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCc
Q 009442 180 FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETG 242 (534)
Q Consensus 180 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp 242 (534)
+-..+...+. ++..-+..+.+...+.++.++..++++..|
T Consensus 146 i~t~i~~~~f-----------------------~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 146 IFTQIYSAFF-----------------------GDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHHHc-----------------------CCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7766655544 222345555556666666666666665443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=104.45 Aligned_cols=338 Identities=13% Similarity=0.099 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhh
Q 009442 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMS 155 (534)
Q Consensus 76 ~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 155 (534)
.++.+....+++++.+.+.|+.|.|+.++++......-.+...+- | -+.++++-.+.|+|.+..+...-.|++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~------N-~y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP------N-SYYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc------c-hHHHHHHHHHhhhhHHheecccceehh
Confidence 778888899999999999999999999999999998887777664 3 577889999999999999999999999
Q ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHH
Q 009442 156 EYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQL-FPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW 234 (534)
Q Consensus 156 e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~ 234 (534)
|..+++.+.+..++.-+....+.++|..+-..+....... .....+.+..+.. ...+..-+..+.+...+..+.++.
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~v~~~~~~l~~i~ 206 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEV--LFIDFEIKVLFGVLLAISVLSIIN 206 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcch--hhhhHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988888888888776655443221100 0000000000000 000000111111111112222222
Q ss_pred HhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhH--HHhhhhhhHHHHHHHHHHHHHHHH
Q 009442 235 RMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSR--EFFQRHGLHLIGTMSTWFLLDIAF 312 (534)
Q Consensus 235 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 312 (534)
..+.|.+ .+ ...++..+ .+..+.++. +..+.+ +++.+...++..++..
T Consensus 207 ~~~~p~~-~~--~~~~~~~~-------------------------~~~~~~l~~~~~l~~~~--~ml~L~~~f~~tG~~~ 256 (461)
T KOG3098|consen 207 FDFLPSK-DV--VNCKSSSE-------------------------TSFSELLKLTFKLLKTP--KMLLLFPFFFYTGLET 256 (461)
T ss_pred eeecCcc-ch--hhhhhhcc-------------------------ccHHHHHHHHHHHhcCH--hHHHHHHHHHHHHHHH
Confidence 2223321 11 00000000 000000011 111111 1222222222221111
Q ss_pred -HHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Q 009442 313 -YSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK---IGRFIIQLVGFFMMSLFML 388 (534)
Q Consensus 313 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~gr~~~~~~~~~~~~~~~~ 388 (534)
+....+... ...+..... +.....++.....+++.+++....+.+.+| +||++++.++..+..+..+
T Consensus 257 Sf~~~iypt~----i~ft~~~~~-----n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~ 327 (461)
T KOG3098|consen 257 SFWISIYPTC----ISFTRKLGS-----NTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFL 327 (461)
T ss_pred HHHHhccchh----hhhhhhccC-----cchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHH
Confidence 111111111 111100000 011123335666677778888888888876 4678888777777766666
Q ss_pred HHHHHhhhccc-----------chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 389 IIGIKYDYLKN-----------DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 389 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
+.-...+...+ .+......+..+..++......+..+.++...+ ++.|..+.++.-+-..+++.++-+
T Consensus 328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhh
Confidence 55554331110 122334455555566666666777777888888 566788888888888777777655
Q ss_pred hhhhh
Q 009442 458 VVQSY 462 (534)
Q Consensus 458 ~~~~~ 462 (534)
..+..
T Consensus 407 ~~~~~ 411 (461)
T KOG3098|consen 407 FSPYL 411 (461)
T ss_pred hhhhh
Confidence 54443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-10 Score=112.24 Aligned_cols=170 Identities=17% Similarity=0.078 Sum_probs=118.0
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 009442 42 ISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSF 121 (534)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 121 (534)
.....|.+.++. +.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+...
T Consensus 290 ~~~~~p~i~~~~------------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~ 357 (479)
T PRK10077 290 VLYYAPEIFKTL------------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 357 (479)
T ss_pred HHHHHHHHHHHc------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHH
Confidence 344556666665 67766677777778888999999999999999999999999999999888776542
Q ss_pred CCCccchHHHHHHHHHHHHHhcccc-ccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009442 122 GSSARSVIGTLCFFRFWLGFGIGGD-YPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPA 200 (534)
Q Consensus 122 ~~~~~~s~~~l~~~r~l~G~~~g~~-~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~ 200 (534)
.... .+ .....+-++.+++.+.. .+....++.|.+|+++|++++++......+|..+++.+.+.+... +
T Consensus 358 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-~------- 427 (479)
T PRK10077 358 YTQA-PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-S------- 427 (479)
T ss_pred hcCc-cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-c-------
Confidence 2110 11 12333444444444432 367789999999999999999999999999999887776544310 0
Q ss_pred CCcccccccCCCCCcchHHHHHHhhHHHHHHHHH-HhcccCCc
Q 009442 201 FEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYW-RMKMPETG 242 (534)
Q Consensus 201 ~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp 242 (534)
+ ..++.+|+..|++.++..++..+. .++.||+.
T Consensus 428 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 428 W---------LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred c---------hhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 0 113567888888866665554444 34567753
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=113.85 Aligned_cols=145 Identities=9% Similarity=0.074 Sum_probs=116.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+++..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+.... ++.+.+.+..++.|++.+.
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~ 310 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT------DDPSHLLYAILGLGFFSSA 310 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc------CCchHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999888777777766666555 3356667778889998888
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGA 225 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~ 225 (534)
.++...++..|..| +++++..+.......+|..++|.+.+.+.+ ..||+..+++.+
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-----------------------~~g~~~~~~~~~ 366 (394)
T PRK03699 311 IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA-----------------------HFGLQAALLTAN 366 (394)
T ss_pred HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------------------HhCchhhhhhhH
Confidence 78888888888776 456778888888889999999999999883 456899988877
Q ss_pred HHHHHHHHHHhcccC
Q 009442 226 LPALTTYYWRMKMPE 240 (534)
Q Consensus 226 i~~~~~~~~~~~~~e 240 (534)
+..++..+....+++
T Consensus 367 ~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 367 GLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665554444443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=118.17 Aligned_cols=174 Identities=10% Similarity=0.021 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc---ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh-hhhH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPA---MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK-IGRF 373 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~ 373 (534)
++.+.+..+...+.+|+...+.+.|+.+ .|++..+.+. ......++..++.+++|+++|| +|||
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~------------~~~~~~~~~~~~~~~~G~laDr~~G~~ 79 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFI------------IFGAYSALVYLLTSVGWWFGDRVWGTK 79 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHhhcchH
Confidence 4555566667778888888888888765 4555444333 6777778888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhh---hhhhhhHHHHHHHh
Q 009442 374 IIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRV---RSTCHALSAAAGKA 450 (534)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~ 450 (534)
+++..+.++..++.+++... .+.+.. .+.....+.+.....+...++..+.+|++. |+++.++.+...++
T Consensus 80 ~~l~~~~~~~~~g~~~~~~~------~~~~~~-~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ni 152 (475)
T TIGR00924 80 KTMVLGGIVLMLGHFMLAMS------IYPDLI-FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINI 152 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhc------ccHhHH-HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHH
Confidence 99999999998888777653 122222 222222333333345566677888888754 88899999999999
Q ss_pred hhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhc
Q 009442 451 GAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVT 493 (534)
Q Consensus 451 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (534)
|..++|.+.+.+.+ ..+|+..|.+.++..+++.+...+.+
T Consensus 153 G~~ig~~l~g~l~~---~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 153 GSFISPLLAGVIAE---NYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999886 45789899887766666554444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=110.10 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=114.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+. + ...+. -++.|++.+.
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~--~~l~g~g~g~ 308 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL----Q-LPVLW--AMVCGLGLGG 308 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc----h-HHHHH--HHHHHHhccc
Confidence 888899999999999999999999999999999999998888887777766554322 1 22222 2467888888
Q ss_pred cccchhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
..+.......+..+ +++|++..+..+....++..++|.+.+++.+..+ +|...|++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g----------------------~~~~~~~~~ 366 (393)
T PRK09705 309 AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG----------------------NYLMDWAFH 366 (393)
T ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------CchHHHHHH
Confidence 88877777777775 5789999999999999999999999999985433 278888876
Q ss_pred hHHHHHHHHH-HhcccCCc
Q 009442 225 ALPALTTYYW-RMKMPETG 242 (534)
Q Consensus 225 ~i~~~~~~~~-~~~~~esp 242 (534)
++..++..+. ..+.||++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 367 ALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 6665554433 44567764
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=117.65 Aligned_cols=176 Identities=13% Similarity=0.015 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+..+++..+...+.......-.|.+..+.+.+..+.+. ......++...+.+..|+++||+|||+.+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~------------~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~ 75 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLW------------IIDIYSLVMAGMVLPMGALGDRIGFKRLLM 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44455555665556666666677777776665544333 455556666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccC-ChhhhhhhhhHHHHHHHhhhhHhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELF-PTRVRSTCHALSAAAGKAGAMIGA 456 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~ 456 (534)
.+..+..++.+..+.. ++...+++.-...+.+.....+.......+.+ |+++|++++|+......+|..++|
T Consensus 76 ~~~~~~~~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp 148 (495)
T PRK14995 76 LGGTLFGLASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGP 148 (495)
T ss_pred HHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777764 22333333323333333333344444444554 789999999999999999999999
Q ss_pred hhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 457 FVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
.+.+.+.+ ..+|++.|++...+.++..++.. ++|+.
T Consensus 149 ~lgg~l~~---~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 149 LVGGILLE---HFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999987 55899999988877777666555 45654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=117.43 Aligned_cols=172 Identities=11% Similarity=0.063 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
++.+.+..++.....+......|.+.++.|.++.+.+. ......++..++.++.|+++||+|||+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 79 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHM------------VIVSYVLTVAVMLPASGWLADRVGVRNIFF 79 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44455555666666666677788888877776554332 455566777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+..+..++.+..... .+.+. +.+..+..+.+.....+...+++.|.+|++.|+++.|+.+....+|..++|.
T Consensus 80 ~~~~~~~~~~~~~~~~------~~~~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 152 (471)
T PRK10504 80 TAIVLFTLGSLFCALS------GTLNE-LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA 152 (471)
T ss_pred HHHHHHHHHHHHHHHh------CCHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8877777766655442 12222 2233333333333345566777889999999999999999999999999999
Q ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 458 VVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
+.+.+.+ ..+|++.|.+...+..++.+....
T Consensus 153 ~~g~l~~---~~gw~~~f~~~~~~~~l~~~~~~~ 183 (471)
T PRK10504 153 LGGLLVE---YASWHWIFLINIPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHh---hccHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887 458899998887777766665554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=117.26 Aligned_cols=170 Identities=9% Similarity=0.018 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 009442 305 WFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMS 384 (534)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~ 384 (534)
++......+......+.+.++.|++..+.+. ......++..++.++.|+++||+|||+.+..+.++.+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGN------------AGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3333344444555566666677766544332 4556667788899999999999999999988888777
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 385 LFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
++.++.... .+.+...+. .+..+++.....+ ...++.|.+|++.|++++|+.+...++|..+++.+.+.+..
T Consensus 113 ~~~~~~~~~------~s~~~l~~~-r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 113 PAVFCMSLV------SSATGFIAV-RFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred HHHHHHHHh------cCHHHHHHH-HHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665553 122222222 2222222222222 33467899999999999999998888888887766655432
Q ss_pred c------ccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 465 D------EDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 465 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
. .+..+|++.|.+.+++.++..+..+++++
T Consensus 185 ~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 185 LIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 11238999999988888777666665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-10 Score=110.39 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=92.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....+. ++...+.+..+..+.+..+
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 337 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ----DNYLLLGACLFGLMATNVG 337 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHhccc
Confidence 778888999999999999999999999999999999998888777666555444322 2222222222223333333
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
..+..+.++.|.+|+++||+++|+......+|..++|.+.+++.
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999987
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-10 Score=104.61 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=133.0
Q ss_pred HHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHH
Q 009442 33 FTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVI 112 (534)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 112 (534)
+...-....++++-|.+.+.. |++....+++.-.+.++..+|+.+.|+++|| +.|+.+.....+..+
T Consensus 222 l~~~g~F~~ftYi~P~L~~v~------------g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~ 288 (394)
T COG2814 222 LFMTGHFALYTYIRPFLESVA------------GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL 288 (394)
T ss_pred HHHcchhhhHHhHHHHHHHcc------------CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence 333444556777888888766 8999999999999999999999999999999 999999988888888
Q ss_pred HHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 113 CAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192 (534)
Q Consensus 113 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~ 192 (534)
..+...+.. ++.+..++.-++.|++.+.........+++ ..|+.++.+.+++....++|..+|..+++.+.
T Consensus 289 ~~l~l~~~~-----~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~--- 359 (394)
T COG2814 289 ALLALTFTG-----ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVL--- 359 (394)
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 877777664 335667777777888877766666666666 33688999999999999999999999999998
Q ss_pred hhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhc
Q 009442 193 LQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMK 237 (534)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 237 (534)
++.|+....+++++..++.+.+.+.
T Consensus 360 --------------------~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 360 --------------------DALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred --------------------HhhchHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999888877666543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=113.77 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=113.4
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009442 310 IAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLI 389 (534)
Q Consensus 310 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~ 389 (534)
..........|.+.++.+.+..+.+. ......++..++.++.|+++||+|||+.+..+.++..++...
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHI------------AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33333344566666665555443322 566667788888999999999999999999988888777766
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccccc
Q 009442 390 IGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSK 469 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (534)
.... ++.+.... ..+..+.+.....+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+ ..
T Consensus 85 ~~~~------~~~~~~~~-~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~ 154 (392)
T PRK10473 85 CSLA------ETSSLFLA-GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KF 154 (392)
T ss_pred HHHh------CcHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Cc
Confidence 6543 12222222 22222222222344566788999999999999999999999999999998887765 44
Q ss_pred chhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 470 KIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
+|+..+.+.+++.++..++.+ ++||++
T Consensus 155 g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 155 PWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 788888888877777666554 456654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=113.16 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=120.6
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......+...+.++++|++.||+.||+++.+|..+-.++.+..++. ...+.+.+.=.+.+.+.....|+...+
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~ 145 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSL 145 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhH
Confidence 6777778888999999999999999999999999999888888875 334444555455566677788899999
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh-hccCCCCCccccc
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL-VTETKGRSLEEIS 504 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 504 (534)
++|.+|.++|++++++.++....|..+|-++...+.+... .|++.|.+.+++.++..++.++ ++|+.++..++.+
T Consensus 146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 9999999999999999999999999999888888777544 4999999999999998888774 5666555444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-09 Score=106.81 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=113.8
Q ss_pred CCCchhHHHHHH-HHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh-ccCCCccchHHHHHHHHHHHHHhc
Q 009442 66 KLPTPINNFVIG-VALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL-SFGSSARSVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 66 ~~s~~~~g~~~s-~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~s~~~l~~~r~l~G~~~ 143 (534)
|.+..+.+++.. ...++..++.++.|+++||+|||+.+.++.++.+++.++... +... ++.+.+.+.-++..++.
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~---~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD---KNLYSMGAAVFFENLCG 330 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHH
Confidence 899999999974 667899999999999999999999887766665555443321 1110 23445555566655555
Q ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH
Q 009442 144 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML 223 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~ 223 (534)
|...+...++..+..+++.+++..++.+...++|..+++.+++.+.+ ..||+..|.+
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-----------------------~~G~~~~f~~ 387 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-----------------------AHGWPTFYLF 387 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhChHHHHHH
Confidence 55556678889999999999999999999999999988888888873 4579999998
Q ss_pred hhHHHHHHHHHHhcccCC
Q 009442 224 GALPALTTYYWRMKMPET 241 (534)
Q Consensus 224 ~~i~~~~~~~~~~~~~es 241 (534)
.++.+++.++....++++
T Consensus 388 ~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 388 SVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888888776666655554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=108.47 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=100.3
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
..+....+.++.-++.+++++|+|+-+++..++.+..+-++.+... .+.|..+. +-++-+......+....+|
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------~n~W~vLP-ieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------QNPWMVLP-IEILQGITHALIWAAIISY 483 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------cCchheee-HHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999988888877777765 23443332 2222222222233455578
Q ss_pred ccccCChhhhhhhhhHHHHHH-HhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 428 PAELFPTRVRSTCHALSAAAG-KAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+....|++.|+++.++..... .+|-.+|.++.|...+ ..+-+..|.++++.+++..++...+
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---RFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe---eehhHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765 4888999999999888 4566778888887777766655543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=112.63 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
+...+..+......+......|.+.++.|++..+.+. ......++..++.++.|++.||+|||+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 73 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGH------------MISYYALGVVVGAPIIALFSSRYSLKHILLF 73 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhH------------HHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 3344444444555555555666666777776554433 6777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFV 458 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 458 (534)
+..+.+++.+..... ++.+.+.+ .-+..+.+.....+....+..|.+|++.|+++++.......++..++|.+
T Consensus 74 ~~~~~~~~~~l~~~~------~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 74 LVALCVIGNAMFTLS------SSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred HHHHHHHHHHHHHHh------CcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 999888887776654 23333333 22333332222234445567889999999999999999889999999998
Q ss_pred hhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 459 VQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
.+.+.+ ..+|++.|.+.+++.++..+..+ ++||.
T Consensus 147 ~~~l~~---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 147 GTYLSQ---EFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888776 45899999988887766655444 45664
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=109.72 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=98.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc--chhHHH-HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHh
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKL--GRKKVY-GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFG 142 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 142 (534)
+++..+.++..+.+.++..++.++.|+++||+ |||+.. .....+..++.++..+.+. ++.+...+..++.|.+
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~ 360 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA----GNPTVDMACMIVIGFL 360 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc----cChHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999 555433 2223333333333323221 2344445555566654
Q ss_pred ccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHH
Q 009442 143 IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII-FAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL 221 (534)
Q Consensus 143 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~ 221 (534)
..........++.|.+|+++||+++|+.+....+|.. ++|.+.+.+. +..||+..|
T Consensus 361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~-----------------------~~~g~~~~f 417 (452)
T PRK11273 361 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-----------------------DFFGWDGGF 417 (452)
T ss_pred HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH-----------------------HHhcchHHH
Confidence 4332333345678999999999999999888778765 4788888887 345699999
Q ss_pred HHhhHHHHHHHHHHh
Q 009442 222 MLGALPALTTYYWRM 236 (534)
Q Consensus 222 ~~~~i~~~~~~~~~~ 236 (534)
++.++.+++.++...
T Consensus 418 ~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 418 MVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776666544443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=115.18 Aligned_cols=143 Identities=10% Similarity=-0.015 Sum_probs=98.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++||+|||+.+..+.++.+++.+.+...... .+....+.+..+..+++.....+.....
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 142 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA---TSSIAIMFVLLFLNGWFQGMGWPPCGRT 142 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 6677778888999999999999999999988888877776665443110 1122222222222222222233445567
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
+.|.+|+++|++++|+.+....+++.+++.+.+...+. ..+|+..|++.+++.++..+..+ ++||+
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 78999999999999999999999999988776654432 23889999988888777655544 45654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=113.34 Aligned_cols=176 Identities=9% Similarity=0.026 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh-hhhH
Q 009442 296 LHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK-IGRF 373 (534)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~ 373 (534)
+.++.+++..+...+.+|+...+.+.|+.+ .|++..+... .............+++|+++|| +|||
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~------------i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFI------------TFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 345566666677778888888777777654 4444332211 3333333444556689999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh--hhhhhhhHHHHHHHhh
Q 009442 374 IIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR--VRSTCHALSAAAGKAG 451 (534)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g 451 (534)
+++..+.++..++.+.+.+... ....+.+.....+.+.....+...+++.|.+|++ .|+.++++.....++|
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig 155 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLL------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIG 155 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHH
Confidence 9999999999998887776421 1111212222233333444566678889999887 4578899999999999
Q ss_pred hhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 452 AMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..++|.+.+++.+ ..||++.|.+.++..+++.+...+.
T Consensus 156 ~~~g~~l~g~l~~---~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 156 SLISLSLAPVIAD---KFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHHHHH---hhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999987 4589988888655444444443333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=111.63 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=99.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++||+|||+.+..+..+..++.+..... ++.+. +.+..+..+.......+...+.
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~-l~~~~~l~G~~~~~~~~~~~~~ 125 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------QSIEQ-FTLLRFLQGIGLCFIGAVGYAA 125 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------ccHHH-HHHHHHHHHhHhhhHHHHHHHH
Confidence 4566777888899999999999999999999888877776666553 12222 2222222222222233455677
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
..|.+|++.|.++.++......++..++|.+.+.+.+ ..+|++.+++.+++.+++.+..+ ..||++
T Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIH---VLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7899999999999999888888889999999888776 34788888888887777666544 346553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=109.57 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=130.1
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhc
Q 009442 41 CISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLS 120 (534)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 120 (534)
.+...+|.+.++.. +.+....|++.+++.+|..+|++..+++.+|+++++.+..+.++++++.+..+++
T Consensus 236 a~~aLlPl~a~~~l-----------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 236 AVWALLPLFARDVL-----------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHHHhhhHHHHHHh-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 33456777765422 7888999999999999999999999999999999999999999999999999988
Q ss_pred cCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009442 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPA 200 (534)
Q Consensus 121 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~ 200 (534)
++.+..++.-++.|++.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+.+
T Consensus 305 ------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~---------- 368 (524)
T PF05977_consen 305 ------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD---------- 368 (524)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 5588888999999999998888889999999999999999999999999999999999999984
Q ss_pred CCcccccccCCCCCcchHHHHHHhhHHHHHHH
Q 009442 201 FEDDEIFSTQPEGDYLWRIVLMLGALPALTTY 232 (534)
Q Consensus 201 ~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~ 232 (534)
..|-+..+.++++..++..
T Consensus 369 -------------~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 369 -------------HFGVRTALLIAGAALLLSA 387 (524)
T ss_pred -------------HhCHHHHHHHHHHHHHHHH
Confidence 3457778777665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=117.00 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=105.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++.+++.++.+++.||+|||+.+..+.++..++.++........ .......+.+.-+..+++..+..+....+
T Consensus 61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 139 (502)
T TIGR00887 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATLCFWRFWLGVGIGGDYPLSAII 139 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 67777788999999999999999999999998888888776665532100 00112233333344444444455677789
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccc--------------------cccchhHHHHHHHHHHHHHHH
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE--------------------DSKKIQHAVLVLAFTNMLGFC 487 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 487 (534)
..|.+|++.|+++.++.+....+|..+++.+...+.... ...+|+..+.+.++..++..+
T Consensus 140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887765442210 013788888777666666666
Q ss_pred HHHhhccCC
Q 009442 488 CTFLVTETK 496 (534)
Q Consensus 488 ~~~~~~~~~ 496 (534)
..+++||+.
T Consensus 220 ~~~~lpESp 228 (502)
T TIGR00887 220 FRLTIPETP 228 (502)
T ss_pred HHHhCCCCH
Confidence 666788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=105.81 Aligned_cols=118 Identities=10% Similarity=-0.024 Sum_probs=103.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++ ++.+.+++..++.|++.+.
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST------TALPWLIVIQILHCGTFTV 309 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999988888777776 5588889999999999998
Q ss_pred cccchhhhhhhccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVF-AMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~-~~~~lG~~i~~~~~~~l~~ 190 (534)
..+....++.+. +++++++..+.+. ...++|..+++.+++.+.+
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888886 5667788888876 5567888999999999983
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=106.67 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=108.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ +.+.+++..++.|++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~ 317 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-----NFPLFLVLWFAIGVGYGP 317 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-----hHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999998888888888777777621 277888899999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
..+...+++.|..|+++|++..++......+|..+++.+++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998874
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-09 Score=104.36 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=127.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchh--HHHHHHHHHHHHHHHHHHh--ccCCCccchHHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRK--KVYGITLILMVICAICSGL--SFGSSARSVIGTLCFFRFWLGF 141 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--~~~~~~~~s~~~l~~~r~l~G~ 141 (534)
+++..+...+.-+..+...+|++++|++.||+|.| +++..+++++.+..+...+ .++....++-+.+.+.-++.|+
T Consensus 313 g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~ 392 (477)
T PF11700_consen 313 GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGL 392 (477)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8888888887655555444 1110011457889999999999
Q ss_pred hccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHH
Q 009442 142 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL 221 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~ 221 (534)
..|..++...++.+|..|+++.+..+|++....-....+||++-+.+.+.+++ -|+.+
T Consensus 393 ~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~----------------------~r~g~ 450 (477)
T PF11700_consen 393 FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS----------------------QRYGF 450 (477)
T ss_pred HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------chhHH
Confidence 99999999999999999999999999999999999999999999999876553 67777
Q ss_pred HHhhHHHHHHHHHHhcccC
Q 009442 222 MLGALPALTTYYWRMKMPE 240 (534)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~e 240 (534)
....++.++.+++.+++++
T Consensus 451 ~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 451 LFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 7777777776666666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=114.22 Aligned_cols=138 Identities=12% Similarity=0.016 Sum_probs=105.7
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++.+++.++.|++.||+|||+.+..+.++..++.++...... .....+++.-+..+++.....+....+
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~~~~~~~~~~~ 155 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLAQGSVSPATHKI 155 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHhcccchhhHHHH
Confidence 667777888999999999999999999999988887777666543321 222234444444455555566777788
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..|.+|+++|++++|+.+....+|.++++.+.+.+.+.. .+|+..|++.+++.++..++.+++
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887621 388989998888877766666544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=110.24 Aligned_cols=165 Identities=15% Similarity=0.032 Sum_probs=110.4
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 009442 310 IAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLI 389 (534)
Q Consensus 310 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~ 389 (534)
..........|.+.++.+.++.+.+. ......++..++.++.|+++||+|||+.+..+..+..++.+.
T Consensus 22 ~~~~~~~p~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNVREGAVQA------------VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 33333333455566666666554433 566777888899999999999999999999888887777666
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccccc
Q 009442 390 IGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSK 469 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 469 (534)
.... ++.+ .+.+..+..+++.....+....+..|.++.+.++.+++..+....++..++|.+.+.+.+ ..
T Consensus 90 ~~~~------~~~~-~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~ 159 (394)
T PRK11652 90 ALFA------HSLT-VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LF 159 (394)
T ss_pred HHHH------ccHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc
Confidence 5543 1222 222222222222222233444566788888999999999999888999999999888876 45
Q ss_pred chhHHHHHHHHHHHHHHHHH-HhhccCC
Q 009442 470 KIQHAVLVLAFTNMLGFCCT-FLVTETK 496 (534)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 496 (534)
+|+..|.+.++..++..+.. +++||++
T Consensus 160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 160 GWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 78888888777666554443 3456643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=110.01 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=102.0
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++||+|||+++..+..+..++.+..... ++.+.+ .+.-+..+.+.....+..+++
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~l-~~~r~l~Gi~~~~~~~~~~~~ 128 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------TSMTQF-LIARFIQGTSICFIATVGYVT 128 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------CCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5566667888889999999999999999999988888777666653 222222 222222222222223345567
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
..|.+|++.+++++++.+....++..++|.+.+.+.+ ..+|++.|++.+++.+++.+..+ .+||++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~---~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH---FVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 7899999999999999999999999999999888775 45899999998888777766544 467754
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-10 Score=108.35 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHH
Q 009442 299 IGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLV 378 (534)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~ 378 (534)
+.++..++..++.........|.+.++.+.+..+.+. ......++..++.+..+++.||+|||+.+..
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~------------l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAAL------------VQSAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3444555555555555555666666666665544333 6778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhh
Q 009442 379 GFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFV 458 (534)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 458 (534)
+..+.+++.+.+..... .+++....+..+..+.+.....+....+..+..|++.|++..++.+....+|..++|.+
T Consensus 74 g~~l~~~g~~l~~~~~~----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i 149 (410)
T TIGR00885 74 GLFLYALGAFLFWPAAE----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVV 149 (410)
T ss_pred HHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888776543321 12222222222333332222334445667788899999999999999999999999998
Q ss_pred hhhhcccc-----------------------cccchhHHHHHHHHHHHHHHHHHHh
Q 009442 459 VQSYTLDE-----------------------DSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 459 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
.+.+.... +..+|+.+|.+.+++.++..++..+
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~ 205 (410)
T TIGR00885 150 AQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIML 205 (410)
T ss_pred HHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87764321 1125888888887766665544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-10 Score=108.37 Aligned_cols=159 Identities=7% Similarity=-0.042 Sum_probs=104.5
Q ss_pred hhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009442 315 QNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKY 394 (534)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~ 394 (534)
.....|.+.++.+.++.+.+. ......++..++.+..|+++||+|||+++.........+.... ..
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~- 75 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGL------------LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LD- 75 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HH-
Confidence 334445555566666554333 5666677888889999999999999987665544433332211 11
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHH
Q 009442 395 DYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHA 474 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (534)
. .++..+.+.-+..+.+... .........|.+|+++|++++++.+....+|..+++.+.+.+.+ ..+|+..
T Consensus 76 ~-----~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~ 146 (368)
T TIGR00903 76 P-----FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLL 146 (368)
T ss_pred h-----ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHH
Confidence 0 1222233222333322222 23334455899999999999999999999999999999888876 4589999
Q ss_pred HHHHHHHHHHHHHHHH-hhccCC
Q 009442 475 VLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
|.+.+++.++..++.+ ++||..
T Consensus 147 f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 147 IIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 9988888777666555 567653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-10 Score=108.53 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=100.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......+...+..++.|+++||+|||+.+..+..+..++.+.+... ++.+.. .+..+..+.......+...++
T Consensus 51 ~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------~~~~~l-~~~~~l~g~~~~~~~~~~~~~ 123 (400)
T PRK11646 51 ALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------HEPWLL-WLSCILSGLGGTLFDPPRTAL 123 (400)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------ccHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677778899999999999999999999988888777653 233333 333333333332334555677
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhcc
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTE 494 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 494 (534)
+.|.+|++.|++++|+.+....+|..++|.+.+.+.+ .+|+..|++.+++.++..++.. ++||
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8899999999999999999999999999999998873 3888888888777666655443 4454
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=106.51 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhc-ccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHH
Q 009442 301 TMSTWFLLDIAFYSQNLTQKD-IFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVG 379 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~ 379 (534)
..+.++......+....+.|. +.++.++++.+.+. ......++..++.++.|+++||+|||+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGN------------LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLS 73 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhH------------hhHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 344444445555666666664 44566776655444 67777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhh
Q 009442 380 FFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVV 459 (534)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 459 (534)
.++..++.+.+..... +...+.+..+..+.... ..+....++.|.+|+++|+++.++......+|..+++.+.
T Consensus 74 ~~~~~i~~~~~~~~~~------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 74 LLLLAIPCLWAGLAVQ------SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 9988888777766420 22222222333333222 2344556788999999999999999988888887777776
Q ss_pred hhhcccc-------cccchhHHH-HHHHHHHHHHHHHHH-hhcc
Q 009442 460 QSYTLDE-------DSKKIQHAV-LVLAFTNMLGFCCTF-LVTE 494 (534)
Q Consensus 460 ~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 494 (534)
+.+.... ...+|++.+ ...+++..+..++.+ +.+|
T Consensus 147 ~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 147 PPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 6554311 123677777 443444444333333 3444
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=102.57 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 346 RAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
+.......+..++.++..|.++||+|||.++.++.+..++...+.+.. .+....++.=+..+... +..++.-
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------~~F~afv~aR~l~Gi~k-gnl~v~r 142 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------RNFAAFVLARFLGGIFK-GNLSVIR 142 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhcc-CchHHHH
Confidence 337777888999999999999999999999999999888877776663 33433333233333333 4456777
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
++++|++++++|+.+++.++....+|.++||.+.+++.+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 899999999999999999999999999999999999887
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=105.32 Aligned_cols=139 Identities=9% Similarity=0.027 Sum_probs=112.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+..+.|.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+...+ ++.+.+++.+++.|++.+.
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------~~~~~~~~~~~l~g~~~~~ 323 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------TTALEVVILKMLHAFEVPF 323 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999999999999998888877776766 4478888899999998776
Q ss_pred cccchhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
.......+..+..+++.++...+. .+....+|..+++.+++++.+ ..||+..|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~-----------------------~~G~~~~f~~~ 380 (396)
T TIGR00882 324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD-----------------------SIGFQGAYLVL 380 (396)
T ss_pred HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH-----------------------hcccHHHHHHH
Confidence 655666677777887777776655 567889999999999999983 45699999987
Q ss_pred hHHHHHHHH
Q 009442 225 ALPALTTYY 233 (534)
Q Consensus 225 ~i~~~~~~~ 233 (534)
++..++..+
T Consensus 381 ~~~~~i~~~ 389 (396)
T TIGR00882 381 GCIVLLFTL 389 (396)
T ss_pred HHHHHHHHH
Confidence 766555433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=109.51 Aligned_cols=171 Identities=8% Similarity=-0.004 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc-ccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh-hhhHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIF-PAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK-IGRFII 375 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~ 375 (534)
++..++..+...+.+|....+.+.++ ++.|++...... .............+++|+++|| +|||+.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~------------~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSIT------------LFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 55556666677778888887777776 445554433211 2222222223334678999999 599999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh--hhhhhhhHHHHHHHhhhh
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR--VRSTCHALSAAAGKAGAM 453 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~ 453 (534)
+..+.++..++..++.+.. +....+.+.....+.+.....+...++..|.+|++ .|+.+.++.+...++|..
T Consensus 91 ~~~g~~~~~ig~~l~~~~~------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~ 164 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWSG------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF 164 (500)
T ss_pred HHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH
Confidence 9999988888877666531 11222222222222223333455557788999764 345678888999999999
Q ss_pred HhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 009442 454 IGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCT 489 (534)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (534)
++|.+.+++.+ ..||++.|.+.++..+++.+..
T Consensus 165 ~gp~i~g~l~~---~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 165 FSMLATPWLAA---KYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 4589999988776555555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=108.90 Aligned_cols=138 Identities=19% Similarity=0.143 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhh
Q 009442 76 IGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMS 155 (534)
Q Consensus 76 ~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 155 (534)
.....+...++.++.+++.||+|||+++.++.++.+++.++..+.++ ...+..++.-++.+++.+..++....+..
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV----DLYFLRTALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455667788899999999999999999999999998888887754 22345555666777777777788899999
Q ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHH
Q 009442 156 EYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWR 235 (534)
Q Consensus 156 e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~ 235 (534)
|.+|++.|++++++......+|.+++|.+.+ +. ..++..++++.++..++..+..
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG------------------------EKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH------------------------HHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888 43 2235667777666666666666
Q ss_pred hcccCCc
Q 009442 236 MKMPETG 242 (534)
Q Consensus 236 ~~~~esp 242 (534)
+++||+.
T Consensus 492 ~~lpet~ 498 (505)
T TIGR00898 492 LFLPETK 498 (505)
T ss_pred HcCcCCC
Confidence 7788863
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=109.43 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=103.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++||+|||+.+..+.++..++...+... ++.+... +..+..+++.....+...++
T Consensus 31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~-~~~~l~g~~~~~~~~~~~~~ 103 (377)
T PRK11102 31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------QTIDQLI-YMRFLHGLAAAAASVVINAL 103 (377)
T ss_pred HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------ccHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5667778888999999999999999999999988888887777654 1222222 22223333233334455678
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
..|.+|++.|+++.++.+....+|..++|.+.+.+.+ ..+|+..+.+.+++.++..++.. ++||+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---WFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999999999999999888876 44788888888877777665544 45654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-09 Score=102.96 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=87.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHH-HHh-ccCCCccchHHHHHHHHHHHHHhc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAIC-SGL-SFGSSARSVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~~-~~~~~~~~s~~~l~~~r~l~G~~~ 143 (534)
|++..+.++....+.++..++.++.|+++||+|||+++..+..+..+.... ... ..+ +++..+.+..++.|++.
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 345 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA----PSFARMLAVELWLSFLY 345 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHHH
Confidence 788888899988999999999999999999999999887765544332221 111 111 23444555566666776
Q ss_pred cccccchhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009442 144 GGDYPLSATIMSEYANKKTRGAFIAAVFA-MQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~-~~~lG~~i~~~~~~~l~~ 190 (534)
+...+....++.|.+|++.|+...++... +..++..++|.+.+++.+
T Consensus 346 g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 346 GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666677889999999999999988544 344456678888888874
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=108.20 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=97.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......+...+..++.|++.||+|||+++..+..+..++.+.+.... +. .. .-+..+.+.....|...++
T Consensus 43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------~~---~~-~r~l~G~~~a~~~pa~~a~ 112 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------HP---LL-AYGLVGIGAAAYSPAKYGI 112 (393)
T ss_pred HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------HH---HH-HHHHHHHHHHHHHHHHHHH
Confidence 55666677888899999999999999999999888877666554421 11 11 1122333344456777889
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (534)
+.|.+|+++|++++|+.+....++.++||.+.+.+.+. .+...+.+.+...+++.+....+||.+
T Consensus 113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999998863 355555555554444444444566643
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=101.12 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=118.5
Q ss_pred hhhcccccccccccc-cccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009442 318 TQKDIFPAMGLVHKA-PQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDY 396 (534)
Q Consensus 318 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 396 (534)
..|.+.++.|++..+ .+. .......+..+..+.+|+++||+|-|+++..+.+..++..++.++.
T Consensus 48 a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--- 112 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--- 112 (511)
T ss_pred HHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---
Confidence 344555577887776 444 6777778888899999999999999999999999988888888774
Q ss_pred cccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHH
Q 009442 397 LKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVL 476 (534)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (534)
.....+.+.=++.+.+..... ....++...+|+++|+++.|+.+....+|.++++++.+.+. ..+...|....+
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~ 186 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNI 186 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHH
Confidence 334444444455555554444 66778899999999999999999999999999999999843 233334444556
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 009442 477 VLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~ 496 (534)
+......+++++.+++|..+
T Consensus 187 Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 66677777778888887544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-09 Score=98.09 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
..++..-..+.++.+. .++.....-..++ |++..+..++.-...+..++|++++|++.||+|.|+++
T Consensus 255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~------------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl 321 (438)
T COG2270 255 VLFLIARFFYIDGVNT-ILAMGGVFGAADL------------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL 321 (438)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHHHHc------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 3444445556666544 3333333444466 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
..++++..+.++...+.. .-..+.+.-.+.|+..|+.+....+|..+..|+++-++.+|++....-.+..+||.
T Consensus 322 ~~~lvi~~~~~~~~~~~~------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~ 395 (438)
T COG2270 322 MIGLVILSIAALYLIFLE------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPF 395 (438)
T ss_pred hHHHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHH
Confidence 999999998888777763 25567788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCC
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPET 241 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~es 241 (534)
+-+.+.+.+++ -|.-+...+++.++.++....+|+.
T Consensus 396 lv~v~t~iTg~----------------------~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 396 LVAVITQITGS----------------------SRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhcc----------------------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99998876653 5666666666666666666666654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=106.43 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=98.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++||+|||+.+..+..+..++.+..... .+.+...+ ..+..+.+.....+...++
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~-~~~l~G~~~~~~~~~~~~~ 118 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------ESAAQLLV-LRFVQAVGVCSAAVIWQAL 118 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------cCHHHHHH-HHHHHHhhhHHHHHHHHHH
Confidence 6677778888999999999999999999998888877776665543 12222222 2222222111122334456
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
..|.+|++.++...+..+....++..++|.+.+.+.+ ..+|+..+.+.+++.++..+..+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---HFGWQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7899999989999999888888999999999998876 458888888888777777666555544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=103.78 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=102.6
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccc
Q 009442 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDY 147 (534)
Q Consensus 68 s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 147 (534)
+..+.+++.++..++..++.+++++++||+|||+++..+.++.+++.++..+.+ ++.+.+++..++.|++.+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-----SNLPLILVLIILAGFGQNFVT 329 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-----hhHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999999999999999999988888877776653 236677788889999999888
Q ss_pred cchhhhhhhccc-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 148 PLSATIMSEYAN-------KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 148 ~~~~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
+...++++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888999998865 4567999999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.2e-09 Score=101.22 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=107.4
Q ss_pred CCCchhHHHHHHHHH-HHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVAL-VGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~-lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
|++..+.|++..... ....++.++.|++.||+|+|+.+..+..+.++..+............+...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 899999999988876 4667789999999999999999888776653333322211100000223444555666677777
Q ss_pred ccccchhhhhhhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH
Q 009442 145 GDYPLSATIMSEYANK-KTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML 223 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~ 223 (534)
...+...+.+.+..++ +++++..+..+...++|..+++.+++.+.+ ..||+..|++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~-----------------------~~G~~~~f~~ 375 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD-----------------------RFGYAGGFLS 375 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHccHHHHHH
Confidence 7777788888788776 789999999999999999999999999984 3458899988
Q ss_pred hhHHHHHHHHH
Q 009442 224 GALPALTTYYW 234 (534)
Q Consensus 224 ~~i~~~~~~~~ 234 (534)
.++..++..+.
T Consensus 376 ~~~~~l~a~~~ 386 (390)
T TIGR02718 376 GTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=101.56 Aligned_cols=120 Identities=15% Similarity=0.006 Sum_probs=77.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh-ccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL-SFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+.+..+.++..++..++..+++++.|+++||+|||+++.++.++.++....... .... ++....+..-++.+++.+
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV---SSPYAAFGLVMCALLIVS 351 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHH
Confidence 788888999999888888999999999999999999887766554433322211 1110 112222222222223333
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHH-HHHHHHHHHHHH
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGV-GIIFAGLVSMIL 188 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~i~~~~~~~l 188 (534)
...+....++.|++|++.|+.+.|+.+....+ .....|.+.+.+
T Consensus 352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 33445667899999999999999998765443 233356655544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=89.14 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=96.1
Q ss_pred HHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeeccccc
Q 009442 352 ALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAEL 431 (534)
Q Consensus 352 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 431 (534)
..++.+++.++.+++.||+|||+.+..+..+..++.+..... .+.+..... .+..+.......+....+..|.
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------SNITVLIIA-RFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 345667788899999999999999988888777776665543 122322222 2222222223345666788999
Q ss_pred CChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 432 FPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 432 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+|++.|+++.++.+....++..+++.+.+.+.+ ..+|+..+.+.+.+.+++.+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998876 4477788888877777776666543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=98.56 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=116.3
Q ss_pred HHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009442 312 FYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIG 391 (534)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~ 391 (534)
.+......+.+-++.++++.+... +..+..+.+.+.++..|.+.||+|.|+....+.++..+-.+.+.
T Consensus 30 W~l~s~l~~~i~~~~~LS~~q~~l------------l~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 30 WTLFSPLGVFIKSDFGLSEGQKGL------------LVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHhhhccccCCCHHHHHH------------HHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 333333444444667777776555 77778888889999999999999999999999998888887777
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc-
Q 009442 392 IKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK- 470 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 470 (534)
+.... .+. +.+.+..+..+..+ +.+.+...++++.||++.+|.++|+.. .+++|..+..++.+.+.. ..+
T Consensus 98 ~a~~~---~~~-~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~---~~g~ 168 (417)
T COG2223 98 FAVTY---PST-WQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV---AFGF 168 (417)
T ss_pred HHccC---Cch-HHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH---HHhh
Confidence 76542 122 33333333333333 345677788999999999999999999 899999998888888876 335
Q ss_pred --hhHHHHHHHHHHHHHHHHHHh
Q 009442 471 --IQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 471 --~~~~~~~~~~~~~~~~~~~~~ 491 (534)
|+.+..+..+..++..+..++
T Consensus 169 ~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 169 LAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-09 Score=101.84 Aligned_cols=180 Identities=9% Similarity=0.038 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc-cccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFP-AMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQ 376 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~ 376 (534)
++...+.+.......+......+.+.+ +.++++.+.+. ...+..+...+.++..|++.||+|.|+++
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~------------l~ai~~l~~al~rip~G~l~Dr~G~R~v~ 103 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFL------------LTALPSVSGALLRVPYSFMVPIFGGRRWT 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 333333333333334433333444333 46666554433 55556667777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhh
Q 009442 377 LVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGA 456 (534)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~ 456 (534)
.++.++..+..+...+..... .++...+.+..+..++.+ +..+.....+.+.+|+++||++.|+....+++|..+++
T Consensus 104 ~~~~ll~~i~~~~~~~a~~~~--~~s~~~lli~r~l~Gigg-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 104 VFSTAILIIPCVWLGIAVQNP--NTPFGIFIVIALLCGFAG-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHHHccc--CCCHHHHHHHHHHHHHHH-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 999888887777666531100 122223333333333332 24455667789999999999999999877777776665
Q ss_pred hhhhhhc-----ccc----------cccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 457 FVVQSYT-----LDE----------DSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 457 ~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
++.+.+. ... +..+++.+..+...+.++..++.++.
T Consensus 181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554322 100 12246777777777777666665554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=101.35 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=101.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+. ++++.+++..++.|+|.+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~----~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV----WSLPVALVALAIASIGQGV 335 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----hhHHHHHHHHHHHHHHHHH
Confidence 555555555555556778889999999999999999999999998888887777543 4577777888899999999
Q ss_pred cccchhhhhhhccccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 146 DYPLSATIMSEYANKK-------TRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~-------~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
..+...++..|..+.+ ++|...+..+....+|..+++.+.+.+....+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999988754 35889999999999999999999988876544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=9e-07 Score=85.53 Aligned_cols=380 Identities=11% Similarity=-0.006 Sum_probs=184.9
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 28 AGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
+..+.+....+.-.+....+.+..+.++ -+---.+...-.-.+...+..+..|.+.||..|.+++..+.
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p-----------~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l 75 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFP-----------GSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSL 75 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHH
Confidence 3444555555566666677666655531 12223334444445567788889999999999999987776
Q ss_pred HHHHHHHHHHH------hccCCCcc---chHHHHHHHHHHHHHhcccc-ccchhhhhhhcc------ccchhhhHHHHHH
Q 009442 108 ILMVICAICSG------LSFGSSAR---SVIGTLCFFRFWLGFGIGGD-YPLSATIMSEYA------NKKTRGAFIAAVF 171 (534)
Q Consensus 108 ~~~~i~~~~~~------~~~~~~~~---~s~~~l~~~r~l~G~~~g~~-~~~~~~~i~e~~------~~~~rg~~~~~~~ 171 (534)
+..-++..+.+ +....... .....+++.-.+.|.-.-.. .....+.=.||. +++.+.+.++...
T Consensus 76 ~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR 155 (432)
T PF06963_consen 76 VVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR 155 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH
Confidence 66544333222 11111000 01122222222222211111 111122223332 3455667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHH-----hcccCCccchh
Q 009442 172 AMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWR-----MKMPETGRYTA 246 (534)
Q Consensus 172 ~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-----~~~~esp~~~~ 246 (534)
-.--+.-+++|++.+.+.. ..+.+...++.+...++.+..- ......|.
T Consensus 156 RIDL~ckllaPl~vG~l~t-----------------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~--- 209 (432)
T PF06963_consen 156 RIDLFCKLLAPLFVGLLMT-----------------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA--- 209 (432)
T ss_pred HHHHHHHHHHHHHHHHHhh-----------------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH---
Confidence 7778899999999999873 3446666555554444433221 11123332
Q ss_pred hhcCChHHHHHHHHhhh-ccccchhhhhhhhhcc--cCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 009442 247 IIEGNAKQAASDMGRVL-DIEIDEEHDKLSQFKE--VNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIF 323 (534)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (534)
++.+++++..+..++.. ..+.+.+....+...+ +...+-++.....+....-+...+.++. ..++......|.
T Consensus 210 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T----VLsf~~lmt~yl 285 (432)
T PF06963_consen 210 LAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT----VLSFGGLMTAYL 285 (432)
T ss_pred hcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH----HhcCcHHHHHHH
Confidence 22222211111100000 0000000000000000 0000111111111111112222222222 112223334455
Q ss_pred ccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-hh
Q 009442 324 PAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-NK 402 (534)
Q Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 402 (534)
.+.|+++...+. .-....+.++.|+++..++.+|+|..+.-.++.....+++............+ +.
T Consensus 286 ~~~G~s~~~igi------------~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 286 KSQGYSPSVIGI------------FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred HHCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 555666554333 56667788889999999999999988877777766665555444433222211 11
Q ss_pred HH--HHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhh
Q 009442 403 WL--FATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 403 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 460 (534)
.. .++......-.+-.++--...-+.+|..|+++||+..|+-+..+++...+.-.+.-
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11112222222223333334456789999999999999999999987777655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-09 Score=102.51 Aligned_cols=149 Identities=14% Similarity=0.037 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+......++...+.........|.+.++.+.++.+.+. ......++..++.++.|++.||+|||+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl------------~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~ 95 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 34444555555666666777777776666666554443 677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+..+..++.+++..... .+++..+.+.-+..+.+.....+....++.|..|++.|...+++.+....+|..+++.
T Consensus 96 ~g~~~~~~~~~l~~~~~~----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~ 171 (438)
T PRK10133 96 TGLFLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876532211 1223333332233332222233444556677777777777889999999999999998
Q ss_pred hhhhh
Q 009442 458 VVQSY 462 (534)
Q Consensus 458 ~~~~~ 462 (534)
+.+.+
T Consensus 172 ~g~~l 176 (438)
T PRK10133 172 FGQSL 176 (438)
T ss_pred HHHHH
Confidence 76654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-09 Score=102.84 Aligned_cols=175 Identities=10% Similarity=0.011 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh-----hhHH-H
Q 009442 302 MSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI-----GRFI-I 375 (534)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~-~ 375 (534)
...++.++..+.....-.|.++++.|++..+.+. ....... .+..++.|+++||+ |||+ .
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~------------~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~ 70 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGF------------FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW 70 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence 3455566666666677788888888888776544 2222222 46788999999999 7765 6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHh
Q 009442 376 QLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIG 455 (534)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~ 455 (534)
+..+.++.++++..+.+... ....+.+....+...+......+...+++.|.+|+++|+++.++......+|.+++
T Consensus 71 l~~~~~~~~l~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777766655421 12222223232222333333456677888999999999999999999889999999
Q ss_pred hhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 009442 456 AFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (534)
+.+.+.+.+.. .+|+..|++.+++.++..+..+++||++
T Consensus 147 ~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 147 GGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred hHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 98888776521 3899999988887776665555566653
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=99.55 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=115.9
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
.+....+.+++.+++.|.+.||+|+|..+++|.+++..+.+++++. +....+.+.=..-+.+.........++
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvgsA~~~tsglam 183 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVGSAFADTSGLAM 183 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence 6777888999999999999999999999999999999999999885 444444444445555555555667788
Q ss_pred ccccCChhh-hhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 009442 428 PAELFPTRV-RSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTET 495 (534)
Q Consensus 428 ~~e~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (534)
.++.+|++. |++++|+.-.+..+|-.+||...|.+++ ..|+..+|+++++++++...+.+++-|.
T Consensus 184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe---~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE---FAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh---hcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999865 7999999999999999999999999998 5589999999999999999988876443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=93.24 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=94.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+++..+.++..+.+..+..+|.+..+++.||+|+|+.+.++.++..++.++....+. .. ...+-++.|++.+.
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~------~~-~~~~~~l~g~~~s~ 246 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG------YV-AMWFVLALGLFNSI 246 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC------HH-HHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998888888877766655422 22 22355589999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
.+|...+...+..|+ +.+.+.++. ....+|.++.|.+.+.+.
T Consensus 247 i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 247 MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 999999999998875 455666665 566789999999988887
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-08 Score=93.83 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=110.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccc-hHH--HHHHHHHH--HH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARS-VIG--TLCFFRFW--LG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~-s~~--~l~~~r~l--~G 140 (534)
|++..+.-+......+...+..+++..+.||+|||+.++.+..++.+..+++.......... ++. ..+++.++ ..
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999888877653221101 011 12333333 33
Q ss_pred HhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHH
Q 009442 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIV 220 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~ 220 (534)
++.|. .|+..-+.+|.+|++.|..+.+...+..-+..++-...-..+.+..+ = +.
T Consensus 381 f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------------~-~~ 435 (485)
T KOG0569|consen 381 FAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------------P-YV 435 (485)
T ss_pred hhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------c-hh
Confidence 34443 57788889999999999999998888777777776666666654332 2 66
Q ss_pred HHHhhHHHHH-HHHHHhcccCCc
Q 009442 221 LMLGALPALT-TYYWRMKMPETG 242 (534)
Q Consensus 221 ~~~~~i~~~~-~~~~~~~~~esp 242 (534)
|++..+++++ .+..++++|||.
T Consensus 436 filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 436 FILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred hHHHHHHHHHHHHHHHHhCcccC
Confidence 6666666555 555666899974
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-08 Score=93.99 Aligned_cols=147 Identities=13% Similarity=0.159 Sum_probs=120.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..++++=.+.++++++ .+.+.+.+.+.|+-.+.
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~------~~~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN------PWVISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S------HHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc------hHHHHHHHHHHHHHHHH
Confidence 446677999999999999999999999999999999999999999999999999944 99999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
.......|+++.+|+|-.++...+ .+...++|..+.+.++|.+. ++.|.+..|++.
T Consensus 329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-----------------------d~~G~~~tylim 385 (412)
T PF01306_consen 329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-----------------------DRIGFQHTYLIM 385 (412)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-----------------------hhcCcHHHHHHH
Confidence 999999999999998887777766 46788999999999999998 455688888876
Q ss_pred hHHHHH-HHHHHhcccCC
Q 009442 225 ALPALT-TYYWRMKMPET 241 (534)
Q Consensus 225 ~i~~~~-~~~~~~~~~es 241 (534)
+.+.+. .++..+.+++.
T Consensus 386 g~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHheeeecCC
Confidence 555544 44444555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=107.91 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=124.3
Q ss_pred hhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009442 315 QNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKY 394 (534)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~ 394 (534)
.....+.+-++.++++.+.+. +.....++..++.++.+++.||.+||+.+.++.++.+++.+++++..
T Consensus 52 ~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence 344556666677777777665 66777788888899999999999999999999999999988887753
Q ss_pred hhcc------------------------c--------------------chhHHHHHHHHHHHHHhhcCCcceeeecccc
Q 009442 395 DYLK------------------------N--------------------DNKWLFATLYGLTFFFANFGPNSTTFVLPAE 430 (534)
Q Consensus 395 ~~~~------------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 430 (534)
.... . ...+..+++.-++.+++.....++..+++.|
T Consensus 120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d 199 (633)
T TIGR00805 120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD 199 (633)
T ss_pred HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence 1000 0 0023344445555556566667788899999
Q ss_pred cCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccc------------------c-chhHHHHHHHHHHHHHHHHHHh
Q 009442 431 LFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDS------------------K-KIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 431 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
.+|++.|+...|+.+....+|..+|+.+.+.+.+.... . .|+..|++.+++.++..+..++
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998887653210 0 2566788888777776666666
Q ss_pred hccCC
Q 009442 492 VTETK 496 (534)
Q Consensus 492 ~~~~~ 496 (534)
+|++.
T Consensus 280 ~p~~l 284 (633)
T TIGR00805 280 FPKAL 284 (633)
T ss_pred Ccccc
Confidence 66543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=103.65 Aligned_cols=176 Identities=14% Similarity=0.218 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccc--hhH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLG--RKK 101 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~G--rr~ 101 (534)
.++...++..+......+....+|...+.. +.+..+.+.+.++..+...++.+..|+++|+.. ++.
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~------------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSL------------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 455555666666666677777788888776 889999999999999999999999999999998 556
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 102 VYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
+..+++++.+++.+.+.++ ++++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++|
T Consensus 367 ~~~~~ll~~gl~~~~~p~~------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g 440 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFA------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVG 440 (509)
T ss_pred HHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence 6788888889998888888 5599999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhccc
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMP 239 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~ 239 (534)
|++++.+.+.. .+|...|+..++..++....++..|
T Consensus 441 pPiag~~~d~t----------------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 441 PPIAGLLYDIT----------------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cccceeeeecc----------------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999766322 2388999998888777766666555
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-08 Score=111.86 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=106.3
Q ss_pred CCCch-hHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTP-INNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~-~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+++.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+. .+.+.+++..++.|++.+
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------PSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHH
Confidence 78888 99999999999999999999999999999999988888888888887776 447888888999999999
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
...+...+++.+..|++.||+++++.+....+|.++++.+++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999999999999999999999999988888877665
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-08 Score=94.21 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=120.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHH----HHHHHHHHHHh
Q 009442 67 LPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGT----LCFFRFWLGFG 142 (534)
Q Consensus 67 ~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~----l~~~r~l~G~~ 142 (534)
.+....+.+.++..+.-.+.-...+++..|+|.|+++.++.+.+++=..+.+...+ + .+. .+....+.|+.
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~----~-~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD----P-WPFIVALQLLGQLLHGLT 314 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC----C-cHHHHHHHHHHHhhhhHH
Confidence 66777888888888899999999999999999999999999999999888887632 1 222 33445679999
Q ss_pred ccccccchhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHH
Q 009442 143 IGGDYPLSATIMSEYANKKTRGAFIAAVFA-MQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL 221 (534)
Q Consensus 143 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~-~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~ 221 (534)
.+........|+.+..|++.|+++.+++.+ ..++|..+|..++|++.+.++. .....|...+
T Consensus 315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~-----------------~~~~~~~~~~ 377 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA-----------------RGMFDWSAVF 377 (400)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-----------------hhhhhHHHHH
Confidence 999999999999999999999999999876 4689999999999999976552 1234577777
Q ss_pred HHhhHHHHHHHHH-HhcccC
Q 009442 222 MLGALPALTTYYW-RMKMPE 240 (534)
Q Consensus 222 ~~~~i~~~~~~~~-~~~~~e 240 (534)
.+.++..++..++ .++.+|
T Consensus 378 ~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 378 LVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 7766665554433 334444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=96.56 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=103.8
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhHHHHHHHHHHHHHHHHHHhc
Q 009442 42 ISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKKVYGITLILMVICAICSGLS 120 (534)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~ 120 (534)
.....|.+.++. +.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.++..+.
T Consensus 216 ~~~~lp~~~~~~------------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 216 LIGWLPAILISH------------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred HHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Confidence 344556666655 78889999999999999999999999999999 56777778888888887777766
Q ss_pred cCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 121 FGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 121 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
++ + ... ..-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus 284 ~~----~--~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 284 PM----H--GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hh----h--HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 2 222 24568899999988887777765554 5667888999888888999999999999986544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-08 Score=95.82 Aligned_cols=110 Identities=12% Similarity=-0.008 Sum_probs=89.3
Q ss_pred CCCchhHHHHHHHHH-HHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhcc-CCC----ccchHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVAL-VGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSF-GSS----ARSVIGTLCFFRFWL 139 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~-lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~----~~~s~~~l~~~r~l~ 139 (534)
|.+..+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.. +.. ..++.+.+..+.++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 889999998887665 67889999999999999999999888888887766555431 100 001356778889999
Q ss_pred HHhccccccchhhhhhhccccchhhhHHHHHHHHHH
Q 009442 140 GFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 175 (534)
Q Consensus 140 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 175 (534)
+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999998876543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-06 Score=87.01 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=118.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cchhHHHHHHHHHHHHHHHHHHhccCCCc--cchHHHHHHHHHHHHHh
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LGRKKVYGITLILMVICAICSGLSFGSSA--RSVIGTLCFFRFWLGFG 142 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~ 142 (534)
+.+......+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++..... .......+++-.+..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 7888888888888888888999999999996 59999999999999999988877532110 01123466788889999
Q ss_pred ccccccchhhhhhhccccc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 143 IGGDYPLSATIMSEYANKK---TRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 143 ~g~~~~~~~~~i~e~~~~~---~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
.|+.-+...+...|.++++ +|.....++..+.++|.++++.+..++...... .....+|..
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~----------------fg~~~~~~~ 162 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC----------------FGCQDCYPL 162 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------cccCcchHH
Confidence 9999999999999999754 366788888899999999998888877633211 012457999
Q ss_pred HHHHhhHHHHHHHHHH
Q 009442 220 VLMLGALPALTTYYWR 235 (534)
Q Consensus 220 ~~~~~~i~~~~~~~~~ 235 (534)
.|.+.++..++.++..
T Consensus 163 aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 163 AFGVPAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887776655543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=97.08 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=93.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhh----ccchhHHHHH-HHHHHHHHHHHHHhccCCCc-----------cchH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGD----KLGRKKVYGI-TLILMVICAICSGLSFGSSA-----------RSVI 129 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~-----------~~s~ 129 (534)
|++..+.+.+.-+..+...+.+++.|..+| ||||||.++. +.+...++.++.+++.+... .-..
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 788888888888888999999999999999 5899988655 45555666666666532100 0113
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhhccccchhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 009442 130 GTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGA-FIAAVFAMQGVGIIFAGLVSMIL 188 (534)
Q Consensus 130 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~-~~~~~~~~~~lG~~i~~~~~~~l 188 (534)
..++++--+.-++.......+-+++.|...+++|-+ +++.+..+.++|..+|..++.+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 345556666667777888899999999998877766 99999999999999999888743
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=88.64 Aligned_cols=159 Identities=26% Similarity=0.404 Sum_probs=125.5
Q ss_pred hhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCc--hhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHH
Q 009442 35 DAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPT--PINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVI 112 (534)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 112 (534)
..++........+....++ +.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 81 (338)
T COG0477 14 LGLDLGLLSPALPLLLSTL------------SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLL 81 (338)
T ss_pred HHHhcchHHHHHHHHHHHc------------CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence 3355566666777776665 3333 5789999999999999999999999999999888888877666
Q ss_pred HHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhcccc-chhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009442 113 CAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK-KTRGAFIAAVFA-MQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 113 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~-~~~lG~~i~~~~~~~l~~ 190 (534)
+.++.++..+ ++.+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+..
T Consensus 82 ~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 82 GTLLLALAPN----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777643 3489999999999999999999999999999997 678999988888 588899999888777764
Q ss_pred HHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH
Q 009442 191 IFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT 230 (534)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~ 230 (534)
. ...+||..+.+.......
T Consensus 158 ~---------------------~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 158 A---------------------LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred H---------------------HhcchHHHHHHHHHHHHH
Confidence 3 234699976665554433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=94.92 Aligned_cols=122 Identities=12% Similarity=0.100 Sum_probs=97.4
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHh---ccCCCccchHHHHHHHHHHHHHhcc
Q 009442 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGL---SFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 68 s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+....+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+ ... ++.+.+++.-++.|++.+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~g~~~~ 339 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP----HNALLIVIAGILLNIGTA 339 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc----hhHHHHHHHHHHHHHHHH
Confidence 3456677777777889999999999999999999998888877766655543 222 446777778889999999
Q ss_pred ccccchhhhhhhccc-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 145 GDYPLSATIMSEYAN-------KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
...+...+++.|..+ .++.|...+......-+|..+++.+.+++....+
T Consensus 340 ~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 340 LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 988999999999866 2334668899999999999999999998887654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=86.15 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHH
Q 009442 23 TAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKV 102 (534)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~ 102 (534)
+++.+++..+....+.....++. ...+.| |+|+...+.+.+....-.++.+++.|.++||+|++-.
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~--fF~~rf------------GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~ 332 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPM--FFQKRF------------GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW 332 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH--HHHHhh------------CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh
Confidence 34444455554444443333322 345666 9999999999999999999999999999999999976
Q ss_pred HHH-HHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHH
Q 009442 103 YGI-TLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFA 181 (534)
Q Consensus 103 ~~~-~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~ 181 (534)
.+. +++...++-....|+ ++.=.++..+.|+.........-..+.-..|+++.|++.+..+...++|..+.
T Consensus 333 wv~~a~~~tl~~H~~l~Ft--------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i 404 (459)
T KOG4686|consen 333 WVASACILTLLGHSGLFFT--------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI 404 (459)
T ss_pred hHHHHHHHHHHHhhhHHhh--------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence 554 455555555555665 33345667778887665444455567778888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhH-HHHHHHHHHhcc
Q 009442 182 GLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGAL-PALTTYYWRMKM 238 (534)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i-~~~~~~~~~~~~ 238 (534)
+++++.+.+ ..+.+.|--.|.+... .++....+.+.+
T Consensus 405 ~Iiag~i~d--------------------~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 405 PIIAGFIAD--------------------GDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhheeec--------------------CCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 999999872 1123557666666444 445444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-08 Score=96.11 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=119.6
Q ss_pred HHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHH
Q 009442 31 GFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILM 110 (534)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 110 (534)
..++........+...+...++.. +.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl-----------~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVL-----------GNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHh-----------cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence 334444444455555566655542 223 46788888999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhcccc-------chhhhHHHHHHHHHHHHHHHHHH
Q 009442 111 VICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK-------KTRGAFIAAVFAMQGVGIIFAGL 183 (534)
Q Consensus 111 ~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~lG~~i~~~ 183 (534)
+++.++..+.+. ++.+.+++.-++.|++.+...+...++++|..+. ++.|...+.......+|..+++.
T Consensus 301 ~~~~~~~~~~~~----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~ 376 (428)
T PF13347_consen 301 ALGFLLLFFLGP----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA 376 (428)
T ss_pred HHHHHHHHHHHh----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999988853 3589999999999999999999999999998874 33588889999999999999999
Q ss_pred HHHHHHHHHh
Q 009442 184 VSMILSKIFL 193 (534)
Q Consensus 184 ~~~~l~~~~~ 193 (534)
+.+.+....+
T Consensus 377 i~g~~l~~~G 386 (428)
T PF13347_consen 377 IVGLLLALVG 386 (428)
T ss_pred HHHHHHHHhC
Confidence 9998887655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.9e-08 Score=108.76 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=102.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCC--------------CccchHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGS--------------SARSVIGT 131 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~s~~~ 131 (534)
+.+..+.|++.+.+.+|..+++++.|+++|+.++++.+..+.++.+++.+..++.... ...++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 8888999999999999999999999999999888777666666666655544442000 00023677
Q ss_pred HHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 132 LCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 132 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
+++.-++.|++.+...+...+++.+.+|++.||+++|..+....+|..+++.+.+.+.
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999999988876
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-07 Score=93.37 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccch
Q 009442 71 INNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150 (534)
Q Consensus 71 ~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 150 (534)
..+.+.....+...++.+++++++||+|+|+.+..+.++..+..+...+.+. ++.+.+++..++.|++.+...+..
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP----SNVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677888899999999999999999998887766655444444332 557778888899999999999999
Q ss_pred hhhhhhcccc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 151 ATIMSEYANK-------KTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 151 ~~~i~e~~~~-------~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
.++++|..+. +..|...+.......+|..+++.+++.+.+..+
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998862 224667788888999999999999999887655
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=99.49 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=101.1
Q ss_pred HHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 009442 309 DIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFML 388 (534)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~ 388 (534)
....|....+.+.+.++.|++..+.+. ........ ....+..|++.||+|+|+++.++.++..++.+
T Consensus 40 ~g~~y~fsv~s~~L~~~lgls~~~l~~------------i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~l 106 (591)
T PTZ00207 40 TSFMYAFNLISGAMQARYNLTQRDLST------------ITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTL 106 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 344556667777777777776554322 11221112 23455689999999999999999999999988
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhH-hhhhhhhhccccc
Q 009442 389 IIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMI-GAFVVQSYTLDED 467 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~~ 467 (534)
+.++...... ..+.+.+.++.+..+.+.....+.....+.+.+| +.||++.|+......+|+.+ +++..+...+
T Consensus 107 l~ala~~~~i-~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--- 181 (591)
T PTZ00207 107 LFALTFQEVI-EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--- 181 (591)
T ss_pred HHHHHhcccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 8877522111 1222323332323333322223334455678887 67899999999999999875 4444444433
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 009442 468 SKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
+++..|++.+++.++..++..+
T Consensus 182 --~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 182 --NTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777777766655553
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-08 Score=96.28 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHH----hhhhH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIE----KIGRF 373 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr~ 373 (534)
++.+....+...+.+.....+.+.++++.|.++...+. ......+..++..++.|+++| |+|||
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~------------i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR 73 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASI------------IWLCGPLSGLLVQPLVGYLSDRCTSRFGRR 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence 33344444444455555555666677666665543332 677777888999999999999 59999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhhc--------ccchh---HHHHHHHHHHHHHhhcCCcceeeecccccCChhhh--hh
Q 009442 374 IIQLVG-FFMMSLFMLIIGIKYDYL--------KNDNK---WLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVR--ST 439 (534)
Q Consensus 374 ~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~ 439 (534)
+.++.+ .....+++.++....... ..... +..+..+.+.....+. ..+...+++.|..|+++| +.
T Consensus 74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~-~~~p~rALiaDl~p~~~~~~~~ 152 (477)
T TIGR01301 74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM-LQGPCRAFLADLTGGDARRTRI 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCchhHHHHH
Confidence 988765 455555555554432110 00011 1111122122222222 233456789999998865 57
Q ss_pred hhhHHHHHHHhhhhHhhhhhhhhc--ccc--------c--ccchhHHHHHHHHHHHHHHHHHHh-hccCC
Q 009442 440 CHALSAAAGKAGAMIGAFVVQSYT--LDE--------D--SKKIQHAVLVLAFTNMLGFCCTFL-VTETK 496 (534)
Q Consensus 440 ~~g~~~~~~~~g~~~~~~~~~~~~--~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 496 (534)
++++.+....+|+++++.+.+... +.. + ..+++..|.+.+++.+++.+...+ .+|..
T Consensus 153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 899999999999999998877541 110 0 115677888888877777777664 57743
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-06 Score=83.33 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhh
Q 009442 73 NFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSAT 152 (534)
Q Consensus 73 g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~ 152 (534)
+.+.-+-.+...+..+.+.+..+|+..+.=+....+++.++.++.+++ ++.+.=+++-.+.+++.|........
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~------~~v~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS------PSVWVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec------cchhHHHHHHHHHhhhhhhhHHHHHH
Confidence 334444445566666677788888875555566677888888988888 44888889999999999988877777
Q ss_pred hhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 153 IMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 153 ~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
+.. .+++ ...+-+..+.+.+.++|+..-..+.
T Consensus 136 lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 136 LTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred HHH-hcCc----cccccccCCcChhhHHHHHHHHHHH
Confidence 644 5553 2456666777777777766655444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=100.03 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=113.1
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee
Q 009442 347 AMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (534)
....+..++.++|.++.|.++||+|||++++.+.++..++.+..++. .++....++=++.+++..+...+.+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhccchhHHhHh
Confidence 36777788999999999999999999999999999999988777664 45555555556666666677778889
Q ss_pred cccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 009442 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (534)
+..|.++++.|+.+..+ ....+.++.+++...+++.. +|++.+++..+..++.+++.++.+|.+
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99999999999999999 88888889999998888887 899999988888887777755555654
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=85.12 Aligned_cols=389 Identities=12% Similarity=0.046 Sum_probs=209.8
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCchhHH-HHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhcc
Q 009442 43 STVSKLLGRLYYYDPANPKHNPGKLPTPINN-FVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSF 121 (534)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 121 (534)
-|.-|.+.+.+.+++. +++..+.. -+.-...-.+.+.-++.=.+.|-.--|++++.-.+.......+..+.
T Consensus 21 RPseP~~tpyl~gp~~-------NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g- 92 (433)
T KOG3810|consen 21 RPSEPYLTPYLLGPDK-------NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG- 92 (433)
T ss_pred CCCCCccchhccCCCC-------CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc-
Confidence 4555666555543333 66655543 33334444566666777778998888888888777777777777777
Q ss_pred CCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 009442 122 GSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAF 201 (534)
Q Consensus 122 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~ 201 (534)
++.+.+=+.-++.|...+. ..+-++|+-+..+++++.++.+.-.+..-.|-..|..++-.+.+
T Consensus 93 -----~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs----------- 155 (433)
T KOG3810|consen 93 -----PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS----------- 155 (433)
T ss_pred -----CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh-----------
Confidence 5588888899999998765 56788999999999999999999998888888888888877762
Q ss_pred CcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccC
Q 009442 202 EDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVN 281 (534)
Q Consensus 202 ~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
.+..++...-.+......++..+..++|..+|.+..+++.++....+.++.. .+.+. .+..+..
T Consensus 156 ----------~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~---~~~~~---~~~l~~~ 219 (433)
T KOG3810|consen 156 ----------LETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMN---PQASY---MSYLRGA 219 (433)
T ss_pred ----------hcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcC---ccchh---hHHHHHH
Confidence 2445567777776666667777777888776543222222211111111110 00000 0000000
Q ss_pred cccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHH
Q 009442 282 KYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYW 361 (534)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (534)
...+.++...-...+.++...+-|......+|....+...+.++.. +..... ..+..=.+..+.++++.+
T Consensus 220 ~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~--~~~~~v--------yNG~veAv~tlLGa~~~~ 289 (433)
T KOG3810|consen 220 FVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA--PNPANV--------YNGAVEAVSTLLGAIAAL 289 (433)
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC--CCchhh--------hcCHHHHHHHHHHHHHHH
Confidence 0001101000011112333444455555555555555544444432 111110 011133344455666777
Q ss_pred HHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhh
Q 009442 362 FTVFLIEKIGRFI--IQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRST 439 (534)
Q Consensus 362 ~~g~l~d~~gr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 439 (534)
..|++--++.|.. ++.++....+.+.+.+... .+-|+.-..+.+........ .++...-+++....+.-|.
T Consensus 290 ~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t------~~Iw~~Ya~yvlfr~~y~l~-itiA~~~iA~nL~~e~~gL 362 (433)
T KOG3810|consen 290 AAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT------QHIWVCYAGYVLFRVIYQLT-ITIATFQIARNLSSELFGL 362 (433)
T ss_pred HHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc------cceehhhhhHHHHHhhHhhh-hhHHHHHHHHhhhhhhhee
Confidence 8888766665543 3334444443333333332 23333333333333332222 2333333445556666788
Q ss_pred hhhHHHHHHHhhhhHhhhhhhhhccc-------ccc-cchhHHHHHHHHHHHHHHHHHHhh
Q 009442 440 CHALSAAAGKAGAMIGAFVVQSYTLD-------EDS-KKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 440 ~~g~~~~~~~~g~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
.+|+..+..-+-..+-. -...+. ... .-|..-|++.+++.+++..+....
T Consensus 363 vFGiNTFvAl~lQsilT---~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 363 VFGINTFVALILQSILT---LIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred eeehHHHHHHHHHHhhe---EEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 88877776554333322 222221 111 124456788888888776664433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.7e-08 Score=94.99 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=113.6
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
.......+.+++.+.++++.||+|-|+++..+.++.+++.++.++... .+.+ .+++.=+..++......|....+
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----~~~~-~~~~~R~lqGl~~g~~~pa~~~i 152 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----IGFY-LLLVLRFLQGLGQGVLFPAIGSI 152 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----hcch-hhHHHHHHhHHHHhHHHhhhhce
Confidence 677777899999999999999999999999999999999888888755 2333 33333444444444556777788
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
..+-.|+++|++..++......+|.+++-.+.|.+-+. ..||+..|++.+++.++..++++++
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999884 3699999999999999888887755
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=96.38 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=124.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCc----cchHHHHHHHHHHHH
Q 009442 65 GKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSA----RSVIGTLCFFRFWLG 140 (534)
Q Consensus 65 ~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~----~~s~~~l~~~r~l~G 140 (534)
.|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+......+.-. ..+.+.++..-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 4899999999999999999999999999999999999999999999888766432210000 011345566678899
Q ss_pred HhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHH
Q 009442 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIV 220 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~ 220 (534)
++.+..+.....++++..|++.+|...++.....++|..+++.+++.+.+..+. ..++++.++.
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~----------------~~~~~~~~~~ 426 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGI----------------TCDNSNNLWL 426 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------CcccccchHH
Confidence 998988999999999999999999999999999999999999999999987663 1233444444
Q ss_pred HHH-hhHHHHHHHHHHhcccC
Q 009442 221 LML-GALPALTTYYWRMKMPE 240 (534)
Q Consensus 221 ~~~-~~i~~~~~~~~~~~~~e 240 (534)
..+ ..+..++.+...+++|+
T Consensus 427 ~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 427 LILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 443 44555555555567886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=85.68 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=83.2
Q ss_pred HHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhc
Q 009442 78 VALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEY 157 (534)
Q Consensus 78 ~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 157 (534)
+..+...-|.++.+++.||+|||+.+..+.+++++..++.....+.. ....+++.+|++.- +.+.+++.|.-|.
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn--~~tvllf~arafis----g~fqvaYvYtPEV 462 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN--AYTVLLFTARAFIS----GAFQVAYVYTPEV 462 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHh----chheEEEEecCcc
Confidence 34456778899999999999999999999999999998887765411 11234556676544 3466789999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 158 ANKKTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 158 ~~~~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
+|.+-|+...|.-..+.-+|.++.|.++
T Consensus 463 yPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 463 YPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred cchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 9999999999999999999999999999
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=84.82 Aligned_cols=125 Identities=17% Similarity=0.267 Sum_probs=105.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+.....+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+. ++.+.+++..++.++|.+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHhhc
Confidence 445566677777788888888999999999999999999999999999999999875 6789999999999999999
Q ss_pred cccchhhhhhhcccc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009442 146 DYPLSATIMSEYANK-------KTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQ 194 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~ 194 (534)
..+...++++|..+- ++-|...+......=+|..++..+.+++....+.
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999886653 2236777888888888999999888888876653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=93.25 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=91.7
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..+..++.|+++|.+|||..++.+.++..++.++.+.. ++....+....+.+.+ .+........
T Consensus 83 ~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------~~~~~~iag~~l~Gvg-aG~~~~~~~~ 154 (599)
T PF06609_consen 83 FSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------QNMNTFIAGMVLYGVG-AGVQELAALA 154 (599)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------CcHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 4455667777888899999999999999999999999998888764 2333333333333322 2223344455
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++|..|.+.|..+.++.....-....+++.+...+.. ..+|++.|++.+++..++++..++
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHHH
Confidence 7999999999888776665544444566666555443 348999999888887777666553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00037 Score=68.56 Aligned_cols=122 Identities=15% Similarity=0.048 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHHHH-hHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhc--cCCCccc------------------
Q 009442 69 TPINNFVIGVALVGTLTG-QLFFGWLGDKLGRKKVYGITLILMVICAICSGLS--FGSSARS------------------ 127 (534)
Q Consensus 69 ~~~~g~~~s~~~lg~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~------------------ 127 (534)
...+.++-+...+..++. .++.+++++|++|++++-+....+...-+++++. |+....+
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 357888888887777766 8999999999999999887777766666665554 1100000
Q ss_pred -----hHHHHHHHHHHHHHhcccccc-chhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 128 -----VIGTLCFFRFWLGFGIGGDYP-LSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 128 -----s~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
+.|...+.-+...+-...... .--.++.|.++.++-.|..+++..+.++|.++++.+..++.+
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222223333443333343 667789999999999999999999999999999988888774
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-09 Score=108.59 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=106.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++.++|.++.|++.||+|||+.+..+.++..++.++..+... ..++..+.+.-+..+++..+..+....+
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~R~~~G~~~g~~~~~~~~~ 126 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----YNNFWMLLIGRFLIGFGIGGAYVVSPIY 126 (451)
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccc
Confidence 567778899999999999999999999999999998888888777532 1133333333344444444556677889
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTET 495 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (534)
..|..|++.|+...++.+....+|..++..+.....+..+..+|+..+.+.++..++..+..+++||+
T Consensus 127 ~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 127 ISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999998888888877765544332222358877777777776666666677876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=88.95 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=84.8
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 346 RAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
........++.+.|.++.|++.||+|||++....++++.++.++.++.............+..+=...+++..+-.|+..
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSA 166 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSA 166 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchH
Confidence 33678888999999999999999999999999999999998886665543222223444455555566666667789998
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
+.++|....+.||+-.+.+..++.+|...|.+
T Consensus 167 tI~SE~an~~~RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 167 TIMSESANKKTRGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred HHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence 99999999999999888777766655444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=82.27 Aligned_cols=144 Identities=12% Similarity=0.067 Sum_probs=98.9
Q ss_pred HHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 009442 307 LLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLF 386 (534)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~ 386 (534)
......|....|.|.+-+..+++..+... ......++.-+ .+..|.+.|++|.+.++.++.+...++
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33446667777888877777777665443 55555666655 478899999999999999999999999
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 387 MLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
...+...........+.+.+.++.+..+.+.............+.||. .||++.|+.-....+++.+-..+...+.+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 988877655333223444444444433332222233333445678885 79999999999999988887777766665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=84.91 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccch
Q 009442 71 INNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150 (534)
Q Consensus 71 ~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 150 (534)
..+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+. ++...+++.-++.|++.+...+..
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~l~ 339 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM----QASITMFVFIFVIGVLHQLVTPIQ 339 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888889999999999999999999877655555454444444332 223344455567788777766666
Q ss_pred hhhhhhccc-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009442 151 ATIMSEYAN-------KKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFL 193 (534)
Q Consensus 151 ~~~i~e~~~-------~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~ 193 (534)
.+++.|..+ .++.|...+......-+|..+++.+++.+....+
T Consensus 340 ~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 340 WVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777777665 2333555677778889999999999998886543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-06 Score=77.16 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=127.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhh-ccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGD-KLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
+++..+...+++....|..+|....|++.. |.++|+.-.+++.+..++..+..++... ++.+.+..+-++.|++.|
T Consensus 240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~---~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 240 GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL---GSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhhh
Confidence 999999999999999999999999999877 6788888788888887777665555221 457889999999999999
Q ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 145 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
.......+.+.+...+++.|..+|.+.....++..++..+++.+.+......+. ....+|-.+|.+.
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-------------~~~~aY~~VF~lE 383 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-------------SPALAYGVVFALE 383 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766543220 1345788889887
Q ss_pred hHHHHHHHHHH
Q 009442 225 ALPALTTYYWR 235 (534)
Q Consensus 225 ~i~~~~~~~~~ 235 (534)
++..+.++.+.
T Consensus 384 a~ll~~a~~ll 394 (403)
T PF03209_consen 384 AVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHH
Confidence 77766655553
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=65.09 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=71.2
Q ss_pred HhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHH
Q 009442 34 TDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVIC 113 (534)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~ 113 (534)
..|..+..+++++|.+.++. ++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+.
T Consensus 3 amGigRFayTplLP~M~~~~------------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (85)
T PF06779_consen 3 AMGIGRFAYTPLLPLMQADG------------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLS 70 (85)
T ss_pred chhhHHHHHHhHhHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 35778899999999999987 999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhccC
Q 009442 114 AICSGLSFG 122 (534)
Q Consensus 114 ~~~~~~~~~ 122 (534)
.+.+++..+
T Consensus 71 ~~~ma~~~~ 79 (85)
T PF06779_consen 71 TAAMALTHS 79 (85)
T ss_pred HHHHHHHhc
Confidence 999999843
|
Note that many members are hypothetical proteins. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=88.83 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccc-cc----ccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh-
Q 009442 297 HLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MG----LVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI- 370 (534)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~- 370 (534)
.++.+...-+.--+.||+.......|+.. .+ ++..++.. .........=...+++||++||+
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~------------l~~~y~slVY~t~i~GG~laDr~L 89 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATG------------LFSAYGSLVYLTPIIGGWLADRVL 89 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHH------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666677888876655544432 22 33332211 22222222233466789999995
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChh--hhhhhhhHHHHHH
Q 009442 371 GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR--VRSTCHALSAAAG 448 (534)
Q Consensus 371 gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~ 448 (534)
|+|+.+..+.+++.++.++++.... .......+.+.. ...+....=+....+..|++|++ .|..++++..+..
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~~---~~~~gl~i~L~~--I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~i 164 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISSV---SGPGGLYIGLAL--IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGI 164 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc---ccccHHHHHHHH--HHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEe
Confidence 9999999999999999999988631 011122222222 22334444455667888998763 3777888888889
Q ss_pred HhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 449 KAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 449 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
++|++++|++.+++.+ ..+|...|...++-..++.+..++.++
T Consensus 165 NiGsl~~p~i~~~~~~---~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 165 NIGSLIAPIITGLLAI---NYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred ehHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999998 568999999999888888887776643
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-06 Score=69.89 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=95.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcccc
Q 009442 67 LPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGD 146 (534)
Q Consensus 67 ~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~ 146 (534)
++...--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-..... - .+.+.++.+-.+.|++.+..
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~------~~~~~l~~~s~l~G~~~a~l 106 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y------PNSYTLYPASALLGFGAALL 106 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h------hhHHHHHHHHHHHhhhhHHh
Confidence 3333333445566677788888899999999999999999999886655543 3 23788999999999999999
Q ss_pred ccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 147 YPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 147 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
++....++.+...+++|++-.+++-.....+.++|.++...+.
T Consensus 107 W~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 107 WTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888877664
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=81.19 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+..+...++..++.........|.+.+....+..+++. .......+..+..+..+++.+|+|+|+-++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~l------------iqfaff~gYf~~~lpa~~~~kk~gyk~gi~ 82 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASL------------IQFAFFGGYFIMSLPAGLLIKKLGYKAGIV 82 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHH------------HHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 44455566666666666666777666555555444333 666667778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+..++++++.++.-... ...+.......+..+.+.....+....++..+.|++....-+.+...++.+|++++|+
T Consensus 83 lgL~l~avg~~lF~pAa~----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 83 LGLLLYAVGAALFWPAAS----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999888754332 1333333332222222222334556678888888888888899999999999999999
Q ss_pred hhhhhcc
Q 009442 458 VVQSYTL 464 (534)
Q Consensus 458 ~~~~~~~ 464 (534)
+.+.+..
T Consensus 159 ~g~~lil 165 (422)
T COG0738 159 LGSSLIL 165 (422)
T ss_pred HHHHHHH
Confidence 9888765
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-06 Score=70.99 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=61.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+....++|.+.-+.+-..++...+.|-++|+-|||+.-+.-++-..++++ .-.+ +.|-.++++|.+-|++.+.
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhS------pqYkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHS------PQYKVLMVGRVLGGIATSL 140 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcC------CceEEEeehhhhhhHHHHH
Confidence 56667778777777777778888899999999999965444444333322 2233 3488899999999999998
Q ss_pred cccchhhh-hhhcc
Q 009442 146 DYPLSATI-MSEYA 158 (534)
Q Consensus 146 ~~~~~~~~-i~e~~ 158 (534)
.+...-++ +.|.-
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777665 45544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=89.20 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=106.2
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......++..++.++.|+++|++|||+.++++.++..++.++.... .++..+.+.-++.+++..+...+...+
T Consensus 94 ~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhhcchhh
Confidence 6777888999999999999999999999999999999999888885 344444444444444444444566778
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETK 496 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (534)
.+|+.|++.||...+.......+|..++ .+.+...+... .+|+..+.+..+.+++-.+..+++||+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVY-AGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999888887777 44444443221 4788888887777777777766777653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-06 Score=75.46 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=116.1
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhHHHHHHHHHHHHHHHHH
Q 009442 39 LFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKKVYGITLILMVICAICS 117 (534)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~ 117 (534)
.++.-.-+|.+..|- |+|..+.|++.+...+.....++....+++|. .+|+..+....++.++.+.+
T Consensus 224 ~Y~~~~WLP~ili~~------------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 224 YYIVIGWLPAILIDR------------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred HHHHHHHHHHHHHHc------------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 344445567777665 99999999999999999999999999999965 67888888888888888888
Q ss_pred HhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 009442 118 GLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKK-TRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLF 196 (534)
Q Consensus 118 ~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~ 196 (534)
.+.|. ++++.. -++.|+|.|..++.+..++.+-.+.. +-++..+..+....+=..+||.+.+++.+..+
T Consensus 292 ~~~P~----~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--- 361 (395)
T COG2807 292 LLAPG----QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--- 361 (395)
T ss_pred HHhhh----hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC---
Confidence 88865 333333 49999999999999999999888644 34555565555555555667888888875444
Q ss_pred CCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH
Q 009442 197 PAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY 233 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~ 233 (534)
+|+...+..+...+...+
T Consensus 362 -------------------sw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 362 -------------------SWSAPLVLLALATLLMLI 379 (395)
T ss_pred -------------------ChHHHHHHHHHHHHHHHH
Confidence 499888876665555433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-06 Score=83.68 Aligned_cols=148 Identities=12% Similarity=0.033 Sum_probs=97.2
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGR-FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV 426 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (534)
......++..+++++.++...|.++ |+.++.+.+++.++.++....... .+.+.++++.+=+..+.+.+.....-.
T Consensus 76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~---~~~~~y~mL~~R~l~Gvg~~n~a~lR~ 152 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV---PNGVKYLMLVARILTGVGVGNFAVLRA 152 (488)
T ss_pred HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHcCcCcccHHHHHH
Confidence 5666788999999999999999986 777888888888888888444332 121333333332222223344456667
Q ss_pred cccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc----------ccchhHHHHHHHHHHHHHHHHHH-hhccC
Q 009442 427 LPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED----------SKKIQHAVLVLAFTNMLGFCCTF-LVTET 495 (534)
Q Consensus 427 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 495 (534)
|+++....+.|.++++..+....+|.++||.+...+....+ ..-|..+-++.+++.++..+..+ +++|.
T Consensus 153 Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 153 YIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 88887777788888888888777777777765444332211 11355677788888888777766 45665
Q ss_pred CCC
Q 009442 496 KGR 498 (534)
Q Consensus 496 ~~~ 498 (534)
.+.
T Consensus 233 ~~~ 235 (488)
T KOG2325|consen 233 YRG 235 (488)
T ss_pred ccC
Confidence 443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=84.40 Aligned_cols=142 Identities=9% Similarity=0.051 Sum_probs=102.0
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
...+..++.+++.+.++.+.||++-.+.+....++.++..++-... ++....++.-++.+....+..|....+
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 6777788889999999999999995555544444433332222221 233334444444455566667888888
Q ss_pred ccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 428 PAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE---DSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 428 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
+...+.+++|++-+|+.+....+|+++|+++...+.+.. ...||++.|++-+++.++..++.+ ++|+..
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 999999999999999999999999999999888754321 134999999999999988887776 456543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00032 Score=68.83 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009442 128 VIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSM 186 (534)
Q Consensus 128 s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~ 186 (534)
.++..++.-++.|++.+........+.+ .+|++ .+..+..+.+++.+++.++..
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~i 158 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMI 158 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHH
Confidence 4777788888999999998888888777 46654 344445566666666555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=81.05 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=121.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+-.+...|.....-..|-.+.-++.+++.+|+|+-+++.+++.+..+=.+..... +|.|+.+...+++|+..+.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L------~n~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL------QNPWMVLPIEILQGITHAL 475 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh------cCchheeeHHHHHHHHHHH
Confidence 5666777888888888999999999999999999999999999999888888888 6699999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAVFA-MQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~~~-~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
.+.+..+|++...||+-|..+.++.+. ..++|--+|.++++.+. ..++=|..|.+.
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-----------------------~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-----------------------ERFGARTTFRIF 532 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh-----------------------eeehhHHHHHHH
Confidence 999999999999999999999988764 46888889999999887 345578888887
Q ss_pred hHHHHHHHHHHh
Q 009442 225 ALPALTTYYWRM 236 (534)
Q Consensus 225 ~i~~~~~~~~~~ 236 (534)
++.+++.+++..
T Consensus 533 giAcl~~l~~~~ 544 (618)
T KOG3762|consen 533 GIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=70.26 Aligned_cols=150 Identities=16% Similarity=0.061 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh-----ccchhH
Q 009442 27 IAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD-----KLGRKK 101 (534)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d-----r~Grr~ 101 (534)
++.+.++++|.-.+.....+|.+.++. ..+.|.+|.|.+.-+ ...+. .-++|.++.| |+||||
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~----------~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSM----------AKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccc----------cCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcc
Confidence 445557777777666545667666541 116788887754322 11111 2345555555 899998
Q ss_pred HHHH-HHHHHHHHHHHHHhcc---------------C-CCccchH--HHHHHHHHHHHHhccccccchhhhhhhccccch
Q 009442 102 VYGI-TLILMVICAICSGLSF---------------G-SSARSVI--GTLCFFRFWLGFGIGGDYPLSATIMSEYANKKT 162 (534)
Q Consensus 102 ~~~~-~~~~~~i~~~~~~~~~---------------~-~~~~~s~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 162 (534)
.-++ .-.+.++..+..+... + ....++. ..+...-++.=+-++.--.+.-.+.-.+..+++
T Consensus 72 SWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n 151 (544)
T PF13000_consen 72 SWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPEN 151 (544)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhh
Confidence 7543 2333333333333222 0 0000111 123333334444445555666777777778888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 163 RGAFIAAVFAMQGVGIIFAGLVSMIL 188 (534)
Q Consensus 163 rg~~~~~~~~~~~lG~~i~~~~~~~l 188 (534)
++.+......+.+.|..++..+--.+
T Consensus 152 ~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 152 VGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred cchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 98888776666666666665554433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0002 Score=66.04 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhh-----
Q 009442 21 HVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGD----- 95 (534)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~d----- 95 (534)
....+..+.+-+..+|...+..+ .+|.+.+.- +.|.++.+...-++. . .---+.|.++.|
T Consensus 29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak------------~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k 93 (510)
T KOG3574|consen 29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK------------GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSK 93 (510)
T ss_pred hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC------------Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHH
Confidence 44455666666889999888888 888877643 777777765433221 1 123577889999
Q ss_pred ccchhHHHHH-HHHHHHHHHHHHHhccCCCcc-----chHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHH
Q 009442 96 KLGRKKVYGI-TLILMVICAICSGLSFGSSAR-----SVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAA 169 (534)
Q Consensus 96 r~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~ 169 (534)
|+||||.-++ +..+.+...+..+.-++.... .+...+...-++.-+.++.--.+.-.+.-.+..+++-|-+...
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~ 173 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC 173 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH
Confidence 9999986433 334433333333332221110 1233344455666677777777778888888888888888776
Q ss_pred HHHHHHHHHHHHHHHH
Q 009442 170 VFAMQGVGIIFAGLVS 185 (534)
Q Consensus 170 ~~~~~~lG~~i~~~~~ 185 (534)
...+.+.|.+++..+-
T Consensus 174 q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 174 QSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHhhhHHhhccee
Confidence 6666666666655443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=77.98 Aligned_cols=137 Identities=22% Similarity=0.181 Sum_probs=104.8
Q ss_pred HHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeeccccc
Q 009442 352 ALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAEL 431 (534)
Q Consensus 352 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 431 (534)
.++..++.++..|.++||+|||..+....+...+..+...+. . |+..++..+.+++ .......++++++.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------~-~~~~~~~~l~g~~--~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------G-YWFFLLLGLSGGF--SAIFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------H-HHHhhhcccccch--hhhhhhhhhheeec
Confidence 355667778889999999999999998888777776666653 2 3333333332222 23455677899999
Q ss_pred CChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH-hhccCCCCCcc
Q 009442 432 FPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETKGRSLE 501 (534)
Q Consensus 432 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 501 (534)
...+.|....|+.+.....+..++|...+...+ ..++..++.+..+..+++.+... ++||+..++.+
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~---~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK---FLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999999999999999887 45788889998888888888776 56887655443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00036 Score=65.94 Aligned_cols=177 Identities=10% Similarity=0.024 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHH
Q 009442 35 DAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICA 114 (534)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~ 114 (534)
.-.....+..+.+...+.+.. + +.+..-....+....+...+....-..+.-|. |+++.....+...+..
T Consensus 30 ~LlpWN~fiTa~~y~~~~~~~-~--------~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i 99 (406)
T KOG1479|consen 30 TLLPWNMFITASDYYYYRFPG-Y--------HNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFI 99 (406)
T ss_pred cccchHhhhccHHHHHhhcCC-C--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334455556666666665521 1 11333333344444455555556666666662 2222211111112222
Q ss_pred HHHHhcc---CCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 115 ICSGLSF---GSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKI 191 (534)
Q Consensus 115 ~~~~~~~---~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~ 191 (534)
..+.++. +......+...++.-.+.|++.|..........++ +|+|.-... ..+.+++..+...+.......
T Consensus 100 ~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqav----m~G~a~aG~l~Sl~~i~tka~ 174 (406)
T KOG1479|consen 100 VTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAV----MSGQALAGTLTSLLRILTKAA 174 (406)
T ss_pred HHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHH----HhcchhHhHHHHHHHHHHHHh
Confidence 2222221 11112346667778888899988887777776665 555543322 234444444444443333222
Q ss_pred HhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccc
Q 009442 192 FLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRY 244 (534)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 244 (534)
+.+ .+.+=..-|.++.+..++++++...+|..|-.
T Consensus 175 ~~~------------------~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 175 FSD------------------SRTSALIYFITSTVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred cCC------------------CCceeehhHHHHHHHHHHHHHHHHHhhcchHH
Confidence 221 22333445556666666666666667776643
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.6e-05 Score=55.45 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=40.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILM 110 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 110 (534)
|+|..++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999998877655443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0015 Score=66.29 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=112.9
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhHHHHHHHHHHHHHHHHHHhc
Q 009442 42 ISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKKVYGITLILMVICAICSGLS 120 (534)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~ 120 (534)
....+..+..++ +.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++..+..++
T Consensus 57 ~~nlv~ylt~~~------------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 57 VSNLVTYLTLEL------------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred hhHHHHHHHHHh------------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666766 66667777777777777778889999999976 99999999998888886554433
Q ss_pred cCCC-----------------ccc--hHHHHHHHHHHHHHhccccccchhhhhhhccc---cch-h--hhHHHHHHHHHH
Q 009442 121 FGSS-----------------ARS--VIGTLCFFRFWLGFGIGGDYPLSATIMSEYAN---KKT-R--GAFIAAVFAMQG 175 (534)
Q Consensus 121 ~~~~-----------------~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~-r--g~~~~~~~~~~~ 175 (534)
.... ..+ ....+..+.-+..+|.|+.-+...++-+|-++ +++ + ...+..+....+
T Consensus 125 a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~ 204 (571)
T KOG1237|consen 125 AMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQN 204 (571)
T ss_pred HHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHH
Confidence 1100 000 12456777778888999999999999999998 322 2 256677777778
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHH
Q 009442 176 VGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWR 235 (534)
Q Consensus 176 lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~ 235 (534)
+|..++..+-.+.- ++.+|.+-|.+..+..++++++.
T Consensus 205 ~g~l~a~t~~vyiq-----------------------~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 205 GGALLAQTVLVYIQ-----------------------DNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHHHHHHhhh-----------------------hcccceeeccHHHHHHHHHHHHH
Confidence 88877776666553 46789999988777666655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.03 Score=55.73 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHH-HHHHHhHhHhhhhhc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALV-GTLTGQLFFGWLGDK 96 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-g~~i~~~~~g~l~dr 96 (534)
.+..++.++.+.+.+++..++... +-.+.+.+.-+ ......+..+-....+ ...+......++++|
T Consensus 19 ~~~E~~k~~~l~~m~f~i~f~y~~----lR~~KD~lvvt---------~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~ 85 (491)
T PF03219_consen 19 HRSELKKFLPLALMFFFILFNYTI----LRDLKDTLVVT---------AQGAEVIPFLKVWGVLPVAILFTILYSKLSNR 85 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCeEEEe---------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666655433 22333322111 1244455666554444 445667889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhc--cCCC--ccchH---------------------HHHHHHHHHHHHhcccccc-ch
Q 009442 97 LGRKKVYGITLILMVICAICSGLS--FGSS--ARSVI---------------------GTLCFFRFWLGFGIGGDYP-LS 150 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~--~~~~--~~~s~---------------------~~l~~~r~l~G~~~g~~~~-~~ 150 (534)
++|++++-+....+...-.++++. |+.. .++.. |...+.-++.-+-.....+ .-
T Consensus 86 ~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLF 165 (491)
T PF03219_consen 86 LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLF 165 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877766666655555543 1100 00111 1111111111121122222 34
Q ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 151 ATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 151 ~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
-.+..|.++.+|-.|..+++..+.++|.++++.+...+.+
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999998888888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=69.03 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=81.4
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHHHHhhcCCcceee
Q 009442 347 AMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWL-FATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 347 ~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 425 (534)
....+..+..++..+.+-|+.||+|-|....++..+..++..+=........++..+- .......+..........+..
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs 162 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS 162 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence 3677777888888899999999999999999999999988877666544222222221 222222222222211122222
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccc
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE 466 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 466 (534)
-+..-.||+++|++|..+..+.+.+|..++.++.+.+....
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 23345689999999999999999999999988888777644
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00048 Score=66.96 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCC---ccchHHHHHHHHHHHHHhccccccchhhhhhhccccc---hhhhHHHHHHHHH
Q 009442 101 KVYGITLILMVICAICSGLSFGSS---ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKK---TRGAFIAAVFAMQ 174 (534)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~rg~~~~~~~~~~ 174 (534)
|+++++.++..+|.++..++.... ...+.+.++++-.+.++|.|+.=+...++..|.++++ +|.+....+..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888899999988855442211 1122467899999999999999999999999999865 4667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHh
Q 009442 175 GVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRM 236 (534)
Q Consensus 175 ~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~ 236 (534)
++|.+++..+.+++. ++.+|.+.|.+.++..+++++..+
T Consensus 82 n~G~~~~~~~~~~i~-----------------------~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ-----------------------QNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHH-----------------------HCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhc-----------------------cccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999888887 577899999998887777666544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00056 Score=63.51 Aligned_cols=142 Identities=15% Similarity=-0.038 Sum_probs=81.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeee-
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFV- 426 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 426 (534)
.+....+...+...+.|.+.||+|||+.-+..+++..++++.--. +....+.+.-+..+.......+..-+
T Consensus 74 Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--------~~~~~L~~GRvlgGiaTSLLfS~FEsW 145 (354)
T PF05631_consen 74 LFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--------SNYPVLLLGRVLGGIATSLLFSAFESW 145 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888889999999999999888888887777654332 22333333333333322222222111
Q ss_pred ccccc----CChhhhhhhhhHHHH-HHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh-hccCCCC
Q 009442 427 LPAEL----FPTRVRSTCHALSAA-AGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL-VTETKGR 498 (534)
Q Consensus 427 ~~~e~----~p~~~r~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 498 (534)
++.|. +|++..+...+...+ .+.+-++.+..+...+.+..+ .|...+|.....+.+++.++... .+|..+.
T Consensus 146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 23333 566666666665552 233444555555555444221 14467888887777777776553 4665443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.071 Score=51.79 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHH-HHHHHhHhHhhhhhc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALV-GTLTGQLFFGWLGDK 96 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-g~~i~~~~~g~l~dr 96 (534)
.+..+..+...++.+++..+..... -.+.+.+.-. ...+..+.++-+..-+ +..+..++.+++.++
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~---------~~gae~I~FlK~~~vlP~avif~~iy~kl~~~ 88 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVT---------RQGAESISFLKTWGVLPSAVIFTIIYQKLLNI 88 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEee---------cCcchhhHHHHHHHhchHHHHHHHHHHHHHhh
Confidence 4455666666666666666655333 3334444211 2345567777777777 677889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCC-----------------cc-c--------hHHHHHHHHHHHHHhcccccc-c
Q 009442 97 LGRKKVYGITLILMVICAICSGLSFGSS-----------------AR-S--------VIGTLCFFRFWLGFGIGGDYP-L 149 (534)
Q Consensus 97 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~-----------------~~-~--------s~~~l~~~r~l~G~~~g~~~~-~ 149 (534)
+-|.+++-+.+..+...-+++++..... .+ + +.|...+.-.+.=+-...... .
T Consensus 89 lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~l 168 (509)
T COG3202 89 LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLL 168 (509)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877777777777652100 00 0 001111111122121111111 3
Q ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 150 SATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 150 ~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
-.....|.+..++-.|..+.++.+.+++..++..+..++.+
T Consensus 169 Fw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 169 FWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557888888888899999999999999988888888775
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=70.00 Aligned_cols=136 Identities=14% Similarity=0.062 Sum_probs=88.8
Q ss_pred cchhHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHhhcCCcceeeecccccCC
Q 009442 356 TFPGYWFTVFLIEK-IGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFP 433 (534)
Q Consensus 356 ~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 433 (534)
.-+..++++++.|+ +||++.+.++.++..++..++.+....... ........+...++..+..+.-|...+...|.++
T Consensus 36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence 34455678888887 699999999999988888877764221100 0111112222222333334445666677777776
Q ss_pred hh---hhhhhhhHHHHHHHhhhhHhhhhhhhhccccc----ccchhHHHHHHHHHHHHHHHHHHh
Q 009442 434 TR---VRSTCHALSAAAGKAGAMIGAFVVQSYTLDED----SKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 434 ~~---~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++ .|...+.+.....++|+++++.+.+.+.+..+ ..+|...|.+.+++.+++.++...
T Consensus 116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 43 46778888888899999999999988874321 235778888888888877766554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0074 Score=59.57 Aligned_cols=104 Identities=9% Similarity=0.084 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-------------------------hhHHHHHHHHHHHH
Q 009442 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKND-------------------------NKWLFATLYGLTFF 414 (534)
Q Consensus 360 ~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~ 414 (534)
.++.+++++|++|++++..........+.++.+......+. ..|.....+...-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 66789999999999988877766666666666553321111 13333333333333
Q ss_pred HhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 415 FANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 415 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
+......-+.|.+++|.+..++-.+-+++....+++|.++++.+...+.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332367899999999999999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=56.98 Aligned_cols=130 Identities=9% Similarity=0.024 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhh
Q 009442 359 GYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRS 438 (534)
Q Consensus 359 ~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 438 (534)
.-+....+.|..+.|++++++.+...+...++.+. .....+-+.-+..+..... -...++++-...|+++--
T Consensus 57 ~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq 128 (412)
T PF01770_consen 57 FLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ 128 (412)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH
Confidence 34567889999999999999988877777766653 3333333333333333222 223445555666777777
Q ss_pred hhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccCCC
Q 009442 439 TCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTETKG 497 (534)
Q Consensus 439 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (534)
++.+.+....-+|..++..+.-.+.. .+...+.....+......++.+..+++|..++
T Consensus 129 ~vts~~raa~l~g~~~s~~lgQllvs-~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 129 KVTSYTRAATLVGRFISSLLGQLLVS-FGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888777777777766665544 22336666667777777777777788876543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0081 Score=58.57 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHH
Q 009442 24 AIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVY 103 (534)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~ 103 (534)
.++...++..+.++....++.........- |+++..+|..-+...+....+.+...++.+|+|..+.=
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~------------G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G 326 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ------------GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG 326 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH
Confidence 445555555444444333444443333332 89999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHh---ccCCC-ccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHH
Q 009442 104 GITLILMVICAICSGL---SFGSS-ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGII 179 (534)
Q Consensus 104 ~~~~~~~~i~~~~~~~---~~~~~-~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~ 179 (534)
.+++....++..++.. ++... ..-+...++.+-.+.=+|.=+.-....-++.|..|+++||...|......++-.+
T Consensus 327 ~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 327 LWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 7777765554444433 22211 0123344444444444444445667788899999999999999999999998888
Q ss_pred HHHHHHHHH
Q 009442 180 FAGLVSMIL 188 (534)
Q Consensus 180 i~~~~~~~l 188 (534)
+...++...
T Consensus 407 l~~~~~ii~ 415 (432)
T PF06963_consen 407 LSFVLTIIF 415 (432)
T ss_pred HHHHHHhcc
Confidence 887776544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0082 Score=49.40 Aligned_cols=108 Identities=7% Similarity=-0.039 Sum_probs=72.6
Q ss_pred HHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecc
Q 009442 349 FVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLP 428 (534)
Q Consensus 349 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
..+......+.+++.+.+.+++|.|+.++++.+...+-....... +. ..+.....+.+++....+...-.++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~-~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NS-YTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hH-HHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 444445556667788999999999999999988777555444321 33 3334444333333333344455677
Q ss_pred cccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 429 AELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 429 ~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
.+...++.+++..++...+...+.++|.++.-.+.+
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888999999999888888888888776555443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0037 Score=63.94 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=107.3
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----------------------------
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN---------------------------- 399 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 399 (534)
+....-++..+...+..+...|..|-+.+-++.++++++.++..+.......
T Consensus 137 I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~ 216 (735)
T KOG3626|consen 137 IASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKST 216 (735)
T ss_pred EeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCc
Confidence 4444556666666777888888888888899999999988888775211000
Q ss_pred ---------------c--hhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhh
Q 009442 400 ---------------D--NKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSY 462 (534)
Q Consensus 400 ---------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~ 462 (534)
. ..|.++++.-++.+.+....+++..+|+-|...++......|+...+..+|-++|-.+.++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~ 296 (735)
T KOG3626|consen 217 NLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFC 296 (735)
T ss_pred cccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 02334444445555555567778888999999888888889999988888877777776665
Q ss_pred ccccccc----------------chhHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 009442 463 TLDEDSK----------------KIQHAVLVLAFTNMLGFCCTFLVTETKGRSLE 501 (534)
Q Consensus 463 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (534)
....... .|...|++.+.+.++..+..+++|+...+..+
T Consensus 297 l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~ 351 (735)
T KOG3626|consen 297 LKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQK 351 (735)
T ss_pred HHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 4322111 35567888899999988888888876655443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.025 Score=57.21 Aligned_cols=122 Identities=22% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH-HHHHHH-HHHHHHHhccCCCccchHHHHHHHHHHHHHhc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI-TLILMV-ICAICSGLSFGSSARSVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~-i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 143 (534)
|-+....+.+.+++++|.++|+.+.+++.++.-|+...+- .+.+.+ ++..+........ ......++..-++.|+..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQ-GLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999988754333332111 111111 1111111110000 001122334455677888
Q ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 144 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
|+..|....+..+... ++-|+..|-.++...+|.++|.++.+++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 8877777776655332 23456778888889999999999887766
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=46.15 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHH
Q 009442 311 AFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFM 382 (534)
Q Consensus 311 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~ 382 (534)
......-+.+.++++.|+++.+.+. ...+..+..+++.+++|.++||.++++.......+
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGi------------l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGI------------LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3444455677788888888876655 78888889999999999999999998877665443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=52.52 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=51.4
Q ss_pred HHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh-hcc--cchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 349 FVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYD-YLK--NDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 349 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
..+...+.++|....|.+.+..-+|+..+...+.+++.+.++..... ... +........++.++.+++..+..++..
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL 226 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL 226 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 34444445566666677666543343333333222222222222111 111 112334455555666666667777665
Q ss_pred eccccc--CChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 426 VLPAEL--FPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 426 ~~~~e~--~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+..|. ..|+.-|.-.|+.-.++++.-.+.-+
T Consensus 227 ~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~I 260 (267)
T PF07672_consen 227 NLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDI 260 (267)
T ss_pred cChhhhcCCCcceehhHHHHHHHHHHHHHHHHHH
Confidence 555554 23344466666666666554444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00015 Score=73.25 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=1.4
Q ss_pred hhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009442 318 TQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYL 397 (534)
Q Consensus 318 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (534)
..+++=+.+++.+.+.+. .....-++.++..++..++.+|..|-+.+-.+.++++++.+++.+.....
T Consensus 25 ~lttiErRF~l~S~~~G~------------i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGL------------ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 344454566777776655 77777788888888889999998888888899999999988887753211
Q ss_pred cc----------------------------------------ch---hHHHHHHHHHHHHHhhcCCcceeeecccccCCh
Q 009442 398 KN----------------------------------------DN---KWLFATLYGLTFFFANFGPNSTTFVLPAELFPT 434 (534)
Q Consensus 398 ~~----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 434 (534)
.. .. .+.++++.-++.+.+.....++..+|+-|..++
T Consensus 93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 10 00 122233333344444445667788899999999
Q ss_pred hhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc------------------cc-chhHHHHHHHHHHHHHHHHHHhhccC
Q 009442 435 RVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED------------------SK-KIQHAVLVLAFTNMLGFCCTFLVTET 495 (534)
Q Consensus 435 ~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (534)
+..+...|+......+|-.+|-.+.+......- +. .|...|++.+++.++..+..+.+|+.
T Consensus 173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 998888999988888887777666665443210 01 25556777777777777766666643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.14 Score=50.12 Aligned_cols=109 Identities=24% Similarity=0.177 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhHhHhhhh---hccchhHHHHHHHHHHHHHHHHHHhccCCCc------------cchHHHHHHHHHHHHH
Q 009442 77 GVALVGTLTGQLFFGWLG---DKLGRKKVYGITLILMVICAICSGLSFGSSA------------RSVIGTLCFFRFWLGF 141 (534)
Q Consensus 77 s~~~lg~~i~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~------------~~s~~~l~~~r~l~G~ 141 (534)
-...+|..++..+.+.++ +++||++.+.++..+..++.++..+...... .+++...++.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 344455555666666666 4689999999998888888887766532111 1246677888899999
Q ss_pred hccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009442 142 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSM 186 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~ 186 (534)
+-+........++.+.. +++|..+.++...-..++..++.....
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999 577888888887777777766554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=58.13 Aligned_cols=161 Identities=10% Similarity=0.052 Sum_probs=113.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccC-----CCccchHHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFG-----SSARSVIGTLCFFRFWLG 140 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-----~~~~~s~~~l~~~r~l~G 140 (534)
|.++...|.+..+..++..+|..+.....-+..-|+++..+.++.++..+....... .+. .+.+..+..-++..
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi-~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGI-PDQWFALGDTILEE 329 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCc-CCeEEEEEhHHHHH
Confidence 589999999998899999999999988888888899988888877776664332211 000 01122334445666
Q ss_pred HhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHH
Q 009442 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIV 220 (534)
Q Consensus 141 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~ 220 (534)
+..+..+-....+++|.+|+..-|...+++....++|..++..++..+.+.++-..+ +..+-.+.
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~---------------~f~~l~~l 394 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD---------------DFSNLWLL 394 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---------------cccchHHH
Confidence 666666777888999999999999999999999999999999999999887662100 11122334
Q ss_pred HHHhhHHHHHHHHHHhcccCCc
Q 009442 221 LMLGALPALTTYYWRMKMPETG 242 (534)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~esp 242 (534)
.+++.+..++.+.+..++|+..
T Consensus 395 ili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 395 ILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4445555566666666777653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.021 Score=51.53 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhhcc--chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccch
Q 009442 73 NFVIGVALVGTLTGQLFFGWLGDKL--GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLS 150 (534)
Q Consensus 73 g~~~s~~~lg~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 150 (534)
|.+.-+-.+...+..+......||+ |.|. .+..++.+.+..+.+++ +|.++=+.+-.+..++.|.....-
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs------~s~~~sL~GV~~aSissGlGEiTF 136 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFS------NSVPMSLLGVVFASISSGLGEITF 136 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEec------cchhHHHhhhhhhhhcCCcceeeh
Confidence 3333344444555555666677775 5554 44556677777777887 668888889999999888776655
Q ss_pred hhhhh
Q 009442 151 ATIMS 155 (534)
Q Consensus 151 ~~~i~ 155 (534)
.++-+
T Consensus 137 L~lss 141 (409)
T KOG3880|consen 137 LALSS 141 (409)
T ss_pred hhhhc
Confidence 55443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00044 Score=65.04 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=2.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhh-c------ccchhHHHHHHHHHHHHHhhcC
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKI-GRFIIQLVGFFMMSLFMLIIGIKYDY-L------KNDNKWLFATLYGLTFFFANFG 419 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~ 419 (534)
......++..+|+.+..+..-+. .+|++. +..+.-.+...++...... . .-.+.++. ++..+..++.+.-
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~-~i~~~l~g~TNGy 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWF-IILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHH-HHHHHHHHHccch
Confidence 56778889999999888753221 233333 3322222222222222110 0 00122333 2233333333433
Q ss_pred CcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhh
Q 009442 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVV 459 (534)
Q Consensus 420 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 459 (534)
..+....+..+..++++|..+-.+...+-.+|-.+|..+.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888887777777777766666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.07 Score=51.27 Aligned_cols=114 Identities=17% Similarity=0.275 Sum_probs=82.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHH--HHHHH---HHHhccCCCccchHHHHHHHHHHHHH
Q 009442 67 LPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILM--VICAI---CSGLSFGSSARSVIGTLCFFRFWLGF 141 (534)
Q Consensus 67 ~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~i~~~---~~~~~~~~~~~~s~~~l~~~r~l~G~ 141 (534)
-...+..+...+|.+|..++.--...+ |+ |++.+.+.+-. .+..+ ..-+. .+.|.+++.-+..|+
T Consensus 278 ~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fi------psi~ivf~lif~eGL 347 (402)
T PF02487_consen 278 SPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFI------PSIWIVFVLIFYEGL 347 (402)
T ss_pred CHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHH
Confidence 345677888888888887775433222 33 33333322222 11111 22233 457888889999999
Q ss_pred hccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 142 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
..|..++-....+.|-.++++|...++....+-++|.+++.+++..+..
T Consensus 348 lGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 348 LGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.086 Score=52.51 Aligned_cols=109 Identities=8% Similarity=0.089 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-------------------------chhHHHHHHHH
Q 009442 356 TFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN-------------------------DNKWLFATLYG 410 (534)
Q Consensus 356 ~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 410 (534)
.++...+-.+++++++|.+++-...........++++...+..+ -..|.....+.
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34445667899999999998777666666666555554321110 11222233333
Q ss_pred HHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcc
Q 009442 411 LTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTL 464 (534)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 464 (534)
..-..+.....-+.|.+++|.++.++..+-+++....+++|.++++.+.....+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333323568899999999999999999999999999999888777766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.1 Score=41.38 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=71.1
Q ss_pred HHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhcccc
Q 009442 81 VGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK 160 (534)
Q Consensus 81 lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 160 (534)
+..+..+.+.+.+.+++|-|+++.++..........-.. ..+..++-.-.+.|++.+..+..--+|+++.-..
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~-------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ 141 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE-------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQN 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-------hhHHhhccHHHhhccccccccccCcceecHHHHH
Confidence 344455556668899999999999888776543332221 3488899999999999999998888888776543
Q ss_pred --chh---------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 161 --KTR---------GAFIAAVFAMQGVGIIFAGLVSMILSK 190 (534)
Q Consensus 161 --~~r---------g~~~~~~~~~~~lG~~i~~~~~~~l~~ 190 (534)
+.| .+..+.+.+.+..+..+|..++..+..
T Consensus 142 ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~ 182 (390)
T KOG3097|consen 142 YANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT 182 (390)
T ss_pred HHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 345666666666666666666555443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.015 Score=55.68 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh----hhhH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK----IGRF 373 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~ 373 (534)
++......+..-+.+-....+.+.+..+.|........ .....-+.+++..++.|..+|| +|||
T Consensus 34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR 101 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGRR 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceecccccccccccccccccc
Confidence 33344444444455666667778888887776654443 5566667778888899999997 5776
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhc----cc--c-hhHHHHHHHHHHHHHhhc---CCcceeeecccccCChhhhhh-hh
Q 009442 374 IIQL-VGFFMMSLFMLIIGIKYDYL----KN--D-NKWLFATLYGLTFFFANF---GPNSTTFVLPAELFPTRVRST-CH 441 (534)
Q Consensus 374 ~~~~-~~~~~~~~~~~~~~~~~~~~----~~--~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~r~~-~~ 441 (534)
|..+ .+.....+++++++.....- .+ . .....++++.+.....-. ......-++..++..++.+.+ ++
T Consensus 102 RPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~An 181 (498)
T KOG0637|consen 102 RPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRAN 181 (498)
T ss_pred cchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccc
Confidence 6554 45555556666555432210 00 1 111222222222222222 223345577888887777777 99
Q ss_pred hHHHHHHHhhhhHhhhhhh
Q 009442 442 ALSAAAGKAGAMIGAFVVQ 460 (534)
Q Consensus 442 g~~~~~~~~g~~~~~~~~~ 460 (534)
+....+..+|+.+|-.+.+
T Consensus 182 s~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 182 SVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhHHHHHHhcceeeeeccc
Confidence 9999999888888766554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.28 Score=47.87 Aligned_cols=112 Identities=8% Similarity=0.056 Sum_probs=77.2
Q ss_pred hcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc--------------------------chhHHHHHH
Q 009442 355 GTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKN--------------------------DNKWLFATL 408 (534)
Q Consensus 355 ~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 408 (534)
+.++..++..++.++..+.+++.........+++++++...+..+ -+.|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 345556677888888888888877777766666666665431110 112444444
Q ss_pred HHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccc
Q 009442 409 YGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDE 466 (534)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 466 (534)
+.+.-..+.....-..|..+.|+...++..+-+++.+...+++..++..+..++.+..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4444333333333356778899999999999999999999999999998888887643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.063 Score=50.22 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=76.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeec
Q 009442 348 MFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVL 427 (534)
Q Consensus 348 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (534)
......+...++.++.|.+.||.|||+.+..+......+.+...+.. ........+.....+.......+...++
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP-----NVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555556666668999999999999777776655333322222221 1112222222222222232345666778
Q ss_pred ccccCCh-hhhhhhhhHHHH-HHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHH
Q 009442 428 PAELFPT-RVRSTCHALSAA-AGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTN 482 (534)
Q Consensus 428 ~~e~~p~-~~r~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (534)
..|..|. +.|+...+.... ...++..+++.+.+.+... ...+|+..+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 8899887 678888888888 5777888888766666554 3346666444444443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.099 Score=37.69 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=55.4
Q ss_pred HHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 009442 312 FYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIG 391 (534)
Q Consensus 312 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~ 391 (534)
-+......|...++.+++..+.+. ......++.++|.+...++.++.++++.+..+.+...+..+.++
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~------------lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGW------------LASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777665544 88889999999999999999998888888999888888888877
Q ss_pred HH
Q 009442 392 IK 393 (534)
Q Consensus 392 ~~ 393 (534)
+.
T Consensus 76 ~~ 77 (85)
T PF06779_consen 76 LT 77 (85)
T ss_pred HH
Confidence 75
|
Note that many members are hypothetical proteins. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.13 Score=50.08 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc--chhHHHHHHHHHHHHHhhcCCcceeeecccccCChh---hhhhhhhHHHHHH
Q 009442 374 IIQLVGFFMMSLFMLIIGIKYDYLKN--DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTR---VRSTCHALSAAAG 448 (534)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~ 448 (534)
+.+.++.++..++.+++.+....... ......+.+.......+..+.=|...++..|.++++ .|.+.........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46677888888888886665432211 111122233233334444555666677788888765 5667777888888
Q ss_pred HhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh
Q 009442 449 KAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL 491 (534)
Q Consensus 449 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (534)
++|+.+++.+.+++.+ ..+|...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999986 568999999988888887776554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.1 Score=39.24 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=32.2
Q ss_pred ceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009442 422 STTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLVTE 494 (534)
Q Consensus 422 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (534)
...+...+ .+|+++-...++-.+.++.+.+... ++.....+.. ..+-...|.+..++.++|.++...+|+
T Consensus 136 gs~~G~a~-~~P~~ytqavm~G~a~aG~l~Sl~~-i~tka~~~~~-~~sA~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 136 GSLYGLAG-LFPSEYTQAVMSGQALAGTLTSLLR-ILTKAAFSDS-RTSALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred cchhhhhh-cCCHHHHHHHHhcchhHhHHHHHHH-HHHHHhcCCC-CceeehhHHHHHHHHHHHHHHHHHhhc
Confidence 33344433 4677665544443444333333222 2222222211 123344566666677777777664443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.4 Score=42.01 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHhHhHhhhhhccchh--HHHHH--HHHHHHHHHHHHHhccCCC---ccchHHHHHHHHHHHHHhc
Q 009442 71 INNFVIGVALVGTLTGQLFFGWLGDKLGRK--KVYGI--TLILMVICAICSGLSFGSS---ARSVIGTLCFFRFWLGFGI 143 (534)
Q Consensus 71 ~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr--~~~~~--~~~~~~i~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~ 143 (534)
..-.+..++.+|-.+|..+..+.. .-++| ++++. .=+++...-++|..-+... ..++-+..++.-++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 345666778888888887654431 11223 33322 2222322223332221100 1134566777899999999
Q ss_pred cccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 144 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILS 189 (534)
Q Consensus 144 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~ 189 (534)
|-..+.+..+..+..++++|..+..+...+..+|..+|..++..+.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988876654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=2.8 Score=42.65 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHH
Q 009442 437 RSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNM 483 (534)
Q Consensus 437 r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (534)
-+...|-....+.+|+++|+++.+++.-. ..|...+..+.+.+.+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp--~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLP--RLGLIRTAALTGSLNL 187 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence 35667888888899999999888876542 1244434444444333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.7 Score=41.10 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHH-----hhh
Q 009442 297 HLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIE-----KIG 371 (534)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g 371 (534)
.+..+.+.+..+++.+-... ..|.+++..+.+-.+.+. ..+..-+.. --+++..++| |+|
T Consensus 32 ~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~---------fS~ay~P~s-----LKllWaPiVDs~y~k~~G 96 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAI---------FSFAYWPFS-----LKLLWAPIVDSVYSKRFG 96 (510)
T ss_pred hHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhh---------hhhhhhHHH-----HHHHHHhhhHHHHHHhhc
Confidence 35566666666665554443 566666654544332221 000111222 2345566667 899
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHhhhccc----chhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHH
Q 009442 372 RFIIQL-VGFFMMSLFMLIIGIKYDYLKN----DNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAA 446 (534)
Q Consensus 372 r~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 446 (534)
||+..+ -+..+.+..+..+......+.. .+.........+..-+.....--..-.+...+..+++-|-+......
T Consensus 97 rrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V 176 (510)
T KOG3574|consen 97 RRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV 176 (510)
T ss_pred cccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence 987543 3444444555555443332221 11111211111111111111111222334455666666666655555
Q ss_pred HHHhhhhHhhhhhhhh
Q 009442 447 AGKAGAMIGAFVVQSY 462 (534)
Q Consensus 447 ~~~~g~~~~~~~~~~~ 462 (534)
....|.+++..++-.+
T Consensus 177 g~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 177 GQTAGYFLGNVVFLAL 192 (510)
T ss_pred HHhhhHHhhcceeeEe
Confidence 5566666666554433
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.35 E-value=3.7 Score=38.81 Aligned_cols=79 Identities=18% Similarity=0.062 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
+.+-++++..-...-.........+.++. +-|....+.-.-.-.....+..++.|...|+..|+|++..
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-----------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~ 98 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLG-----------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQT 98 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHc-----------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHH
Confidence 34456666666666666666666666653 3333333333333344556677778889999999999988
Q ss_pred HHHHHHHHHH
Q 009442 106 TLILMVICAI 115 (534)
Q Consensus 106 ~~~~~~i~~~ 115 (534)
.+.+.-++.+
T Consensus 99 ~L~lqNlSv~ 108 (503)
T KOG2601|consen 99 WLLLQNLSVI 108 (503)
T ss_pred HHhhccHHHH
Confidence 7766544433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=91.97 E-value=2 Score=42.30 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=22.0
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
.++..+..++.++-|........++|.+++-.++-.+.
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 34455667777776665555555566666655554443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.40 E-value=20 Score=36.94 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHhhcchhHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhhcc----------c------chhHHHHHHHHHHH-
Q 009442 352 ALLGTFPGYWFTVFLIEKI-GRFIIQLVGFFMMSLFMLIIGIKYDYLK----------N------DNKWLFATLYGLTF- 413 (534)
Q Consensus 352 ~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~----------~------~~~~~~~~~~~~~~- 413 (534)
.........+++++++|.+ ||-+.+.++.++..++++++........ . .......+++....
T Consensus 82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 3344455667889999985 8999999999888888777766433110 0 11112222222222
Q ss_pred -HHhhcCCcceeeecccccCCh----hhhh--hhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 414 -FFANFGPNSTTFVLPAELFPT----RVRS--TCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 414 -~~~~~~~~~~~~~~~~e~~p~----~~r~--~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
..+..+.-+...++-+|-++. +.+. .-+.......+.|..++..+..+..+ ..+|...|.+..+...++.
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~---~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD---NVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh---cccceeeccHHHHHHHHHH
Confidence 223344455566677777772 2222 34455555666777777777767655 4578888888777777766
Q ss_pred HHHH
Q 009442 487 CCTF 490 (534)
Q Consensus 487 ~~~~ 490 (534)
++.+
T Consensus 239 ~iF~ 242 (571)
T KOG1237|consen 239 LIFL 242 (571)
T ss_pred HHHH
Confidence 6654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 534 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 8e-07 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 2/107 (1%)
Query: 86 GQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145
+ G + D+ + LIL + G F A S I + F G+ G
Sbjct: 78 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--FVPWATSSIAVMFVLLFLCGWFQGM 135
Query: 146 DYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192
+P M + ++K RG ++ VG L+ ++ F
Sbjct: 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 81 VGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLG 140
+ G L GW+ DK+ R G T + + + + + + +G
Sbjct: 299 YAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357
Query: 141 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG-VGIIFAGLVSMILSKIFLQLF 196
F I G L E A KK G G + + + + + F
Sbjct: 358 FLIYGPVMLIGLHALELAPKK----AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 58/464 (12%), Positives = 123/464 (26%), Gaps = 150/464 (32%)
Query: 123 SSARSVIGTLC------FFRFWLGFGIGGDYP-LSATIMSEYANKK-TRGAFIAAVFAMQ 174
S + TL +F + + +Y L + I +E +I +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 175 GVGIIFAGL-VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVL--MLG------A 225
+FA VS + + +L+L A + +P + +++ +LG A
Sbjct: 121 NDNQVFAKYNVSRL--QPYLKLRQA-------LLELRPAKN----VLIDGVLGSGKTWVA 167
Query: 226 LPALTTY----------YWRMKMPETGRYTAIIE----------GNAKQAASDMGRVLDI 265
L +Y +W + + ++E N + + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKL 225
Query: 266 EIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDI-------AF--YSQN 316
I +L + + Y + L L+ LL++ AF +
Sbjct: 226 RIHSIQAELRRLLKSKPYE---------NCL-LV-------LLNVQNAKAWNAFNLSCKI 268
Query: 317 L-TQKD---IFPAMGLVHKAPQVNALREVFET--SRAMFVVAL-----------LGTFPG 359
L T + ++ +++ + L L T P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP- 327
Query: 360 YWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFG 419
+ I I + +D K+ N T+ +
Sbjct: 328 -----RRLSIIAESIRDGL-------------ATWDNWKHVNCDKLTTIIESSL------ 363
Query: 420 PNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLA 479
L P R LS + + I +L L
Sbjct: 364 ---------NVLEPAEYRKMFDRLS---------V---------FPPSA-HIPTILLSLI 395
Query: 480 FTNMLGFCCTFLVTETKGRSLEEISGEDGGVGYYHDTEMSSRPT 523
+ +++ +V + SL E ++ + + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVK 438
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.33 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.28 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.25 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.18 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=384.37 Aligned_cols=460 Identities=17% Similarity=0.207 Sum_probs=328.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
+++.+.+.++++++.+..|||...++.++|.+.+++..+++ .+.+.+..+.|++.+++.+|..+|++++|+++||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~ 82 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN----LSESAANSLLGFCVASALIGCIIGGALGGYCSNRF 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGC----CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788899999999999999999999888743221 11134567789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccCCC------------ccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhh
Q 009442 98 GRKKVYGITLILMVICAICSGLSFGSS------------ARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGA 165 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~~~~~~------------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~ 165 (534)
|||++++++.+++.++++++++++... ..+|+++++++|+++|++.|+..+....+++|+.|+++|++
T Consensus 83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~ 162 (491)
T 4gc0_A 83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK 162 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence 999999999999999999999632100 11569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhcccCCccch
Q 009442 166 FIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYT 245 (534)
Q Consensus 166 ~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~~ 245 (534)
..+..+.+..+|.++++.++..+...... .......||+.+.+..++.++.++..+++||||+|+
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L 227 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDA---------------SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL 227 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCT---------------TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhcccccc---------------ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHH
Confidence 99999999999999999988877632211 012356799999999999999888889999999997
Q ss_pred hhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 009442 246 AIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA 325 (534)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (534)
..+++.+++.+.+++..+.+..++.....+......++...........+.........+......+....+.+.+.+.
T Consensus 228 -~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 228 -MSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 5555666666666555443322211111110000000000011111111122233333333333444445555555554
Q ss_pred ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Q 009442 326 MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLF 405 (534)
Q Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (534)
.+...... ........+..+++.++++++.||+|||+.++.+.....++++.+....... ...+..
T Consensus 307 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ 372 (491)
T 4gc0_A 307 LGASTDIA------------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--APGIVA 372 (491)
T ss_dssp SSCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHH
T ss_pred cCCCccch------------hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--cchHHH
Confidence 44333221 1145666777888999999999999999999999988888887776654421 223333
Q ss_pred HHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhccccc---ccchhHHHHHHHHHH
Q 009442 406 ATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDED---SKKIQHAVLVLAFTN 482 (534)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 482 (534)
.....+...+...+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+... ..+....|+++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33333444444566778888999999999999999999999999999999998887754211 124455788888888
Q ss_pred HHHHHHHH-hhccCCCCCcccccccCCCCC
Q 009442 483 MLGFCCTF-LVTETKGRSLEEISGEDGGVG 511 (534)
Q Consensus 483 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 511 (534)
+++.++.+ ++||||+|+.||+++..+++.
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 88887765 679999999999988776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.35 Aligned_cols=401 Identities=13% Similarity=0.110 Sum_probs=291.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
++.+++.+..++++.+..+++...+++.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~ 89 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-------------FSRGDLGFALSGISIAYGFSKFIMGSVSDRS 89 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-------------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 455677788888888999999999999999888753 4667899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHh----ccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICSGL----SFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 173 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 173 (534)
|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+
T Consensus 90 g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 90 NPRVFLPAGLILAAAVMLFMGFVPWAT------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHH------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhcc------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 9999999999999999999999 7 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcc-hHHHHHHhhHHHHHH-HHHHhcccCCccchhhhcCC
Q 009442 174 QGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYL-WRIVLMLGALPALTT-YYWRMKMPETGRYTAIIEGN 251 (534)
Q Consensus 174 ~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wr~~~~~~~i~~~~~-~~~~~~~~esp~~~~~~~~~ 251 (534)
.++|.++++.+++.+.. ..+ ||+.|++.+++.++. ++..+++||+|+.. ..++
T Consensus 164 ~~~g~~~g~~~~~~l~~-----------------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 218 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGMA-----------------------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPP 218 (451)
T ss_dssp HHHHHTSHHHHHHHHHH-----------------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCS
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc--CCCC
Confidence 99999999999998762 345 999999977776654 44556789987652 1111
Q ss_pred hHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccc
Q 009442 252 AKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVH 330 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 330 (534)
.++..+ +.+++ .+.++.++.+..+.......+ .+.++...+..+.....++....+.+.++++ .|+++
T Consensus 219 ~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 219 IEEYKN--------DYPDD-YNEKAEQELTAKQIFMQYVLP--NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CTTTCC--------C--------------CCTHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred hhhhcc--------ccccc-chhhhhcccccccchHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 111000 00000 000000011111111111111 1224444555555556666777777877776 56554
Q ss_pred cccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh--hhHHHHHHHHHHHH-HHHHHHHHHhhhcccchhHHHHH
Q 009442 331 KAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI--GRFIIQLVGFFMMS-LFMLIIGIKYDYLKNDNKWLFAT 407 (534)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 407 (534)
...+. ......++.+++.++.+++.||+ +||+.+..+..+.. ++++++..... .+.+. ..
T Consensus 288 ~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~ 350 (451)
T 1pw4_A 288 DKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA----GNPTV-DM 350 (451)
T ss_dssp HHHHH------------HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT----TCHHH-HH
T ss_pred HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc----cCHHH-HH
Confidence 43322 67777888999999999999999 99988877766655 44443332210 12222 22
Q ss_pred HHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHh-hhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHH
Q 009442 408 LYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKA-GAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGF 486 (534)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (534)
+..+..+++..+..+....+..|.+|++.|+++.|+.+...++ |..++|.+.+.+.+ ..++...|++.+++.+++.
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHH
Confidence 2223333333334455567889999999999999999999999 99999999999887 4478889998888888887
Q ss_pred HHHHhhc
Q 009442 487 CCTFLVT 493 (534)
Q Consensus 487 ~~~~~~~ 493 (534)
++.++++
T Consensus 428 ~~~~~~~ 434 (451)
T 1pw4_A 428 ILLIVVM 434 (451)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=292.65 Aligned_cols=393 Identities=12% Similarity=-0.022 Sum_probs=272.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc
Q 009442 18 QWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL 97 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~ 97 (534)
+++++..+..+++..+..+++....++..|.+.+++ +++..+.|++.+++.++..++++++|+++||+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~ 88 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445566777778888899999999999999999998 99999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHH---HhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHH
Q 009442 98 GRKKVYGITLILMVICAICS---GLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 174 (534)
Q Consensus 98 Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 174 (534)
|||++++++.++.+++.+++ +++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.
T Consensus 89 g~r~~l~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 89 SYKAGIITGLFLYALGAALFWPAAEI------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 99999999999999999999 777 559999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCC------CCcchHHHHHHhhHHHHHHHHHHh--cccCCccchh
Q 009442 175 GVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPE------GDYLWRIVLMLGALPALTTYYWRM--KMPETGRYTA 246 (534)
Q Consensus 175 ~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~wr~~~~~~~i~~~~~~~~~~--~~~esp~~~~ 246 (534)
++|.++++.+++.+........+.. .....+.+.. ...+||+.|++.++..++..+..+ ..||+++.
T Consensus 163 ~~g~~~g~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 237 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNVPHQSQD---VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-- 237 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSSCCCCHH---HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT--
T ss_pred HHHHHHHHHHHHHHHhccccccccc---ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc--
Confidence 9999999999998872110000000 0000000000 001199999876655544433333 34554432
Q ss_pred hhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcc-ccc
Q 009442 247 IIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDI-FPA 325 (534)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 325 (534)
..++++++ +. ++..++.++++ .++...+..++.....+....+.+.+ .++
T Consensus 238 ~~~~~~~~-----------------~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 238 NHSDAKQG-----------------SF-----SASLSRLARIR-------HWRWAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CCCCSSTT-----------------SH-----HHHHHHHTTCS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc-----------------ch-----hhhHHHHHhCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000000 00 00001111111 12333333444444555555666666 555
Q ss_pred c-cccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHH
Q 009442 326 M-GLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWL 404 (534)
Q Consensus 326 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (534)
. |+++...+. ......++.+++.++.+++.||++||+.+..+.++..++++.+... .+.+.
T Consensus 289 ~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 350 (438)
T 3o7q_A 289 IPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------GGHVG 350 (438)
T ss_dssp STTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred cCCcchhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------CCcHH
Confidence 4 555443322 6677778889999999999999999999999888887776665553 12222
Q ss_pred HHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccc-hhHHHHHHHHHHH
Q 009442 405 FATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKK-IQHAVLVLAFTNM 483 (534)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 483 (534)
..... ..+++.....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.+.+.+ ..+ +...|.+.+++.+
T Consensus 351 -~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 351 -LIALT-LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD---AAGNIPTAELIPALCFA 423 (438)
T ss_dssp -HHHHH-HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH---HHTSSGGGGHHHHHHHH
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHH
Confidence 22222 222333345677778888999977 888888877 677999999999999987 335 7777776655544
Q ss_pred HHHH
Q 009442 484 LGFC 487 (534)
Q Consensus 484 ~~~~ 487 (534)
+..+
T Consensus 424 ~~~~ 427 (438)
T 3o7q_A 424 VIFI 427 (438)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=271.46 Aligned_cols=385 Identities=10% Similarity=-0.004 Sum_probs=242.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhc-cchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhcc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDK-LGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIG 144 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g 144 (534)
|++..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++ ++++.++++|+++|++.+
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP------FGASALFGSIILIIIGTG 123 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC------CSTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 899999999999999999999998 458999999999999999
Q ss_pred ccccchhhhhhhccccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHH
Q 009442 145 GDYPLSATIMSEYANKKT--RGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLM 222 (534)
Q Consensus 145 ~~~~~~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~ 222 (534)
...+...+++.|++|+++ |+++.++++.+.++|..+++.+++.+. +..+||+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~f~ 180 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------------------EAAGYHVAFS 180 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHSCHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhHHHHHH
Confidence 999999999999999988 777888899999999999999999987 3457999999
Q ss_pred HhhHHHHHHHHHHhcc-cCCccc---hhhhcCChHHHHHHHHh-----------------hhccccchhhhhhhhh----
Q 009442 223 LGALPALTTYYWRMKM-PETGRY---TAIIEGNAKQAASDMGR-----------------VLDIEIDEEHDKLSQF---- 277 (534)
Q Consensus 223 ~~~i~~~~~~~~~~~~-~esp~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~---- 277 (534)
+.++..++..+..++. |+..+. ....+.++++..+..+. ..+.+.++........
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHH
Confidence 9776665544443322 221110 00011112222221111 0000000000000000
Q ss_pred ----cccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhhhhHHHHHHH
Q 009442 278 ----KEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFETSRAMFVVA 352 (534)
Q Consensus 278 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (534)
......+....+..++.....+...+..+.....+.....+.+.+..+ .+.+....+. .....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 328 (491)
T 4aps_A 261 PVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW------------FQSLN 328 (491)
T ss_dssp HHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG------------GTTHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH------------Hhccc
Confidence 000000000000111111112222222233333344444444444433 2332222222 34555
Q ss_pred HhhcchhHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHhhcCCcceee
Q 009442 353 LLGTFPGYWFTVFLIEKIGRFIIQL-----VGFFMMSLFMLIIGIKYDYLK--NDNKWLFATLYGLTFFFANFGPNSTTF 425 (534)
Q Consensus 353 ~~~~~~~~~~~g~l~d~~gr~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (534)
.++.+++.++.+++.||++||+... .+..+.+++++++........ .........+..+..+++.....+..+
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 408 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 6667777888999999999886544 666666666555554321100 011222233333333444444566778
Q ss_pred ecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh-ccC
Q 009442 426 VLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV-TET 495 (534)
Q Consensus 426 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 495 (534)
.++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+. ++...+.+.+++++++.++.+++ ++.
T Consensus 409 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999888753 56677888888777777766654 443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-32 Score=263.04 Aligned_cols=356 Identities=15% Similarity=0.125 Sum_probs=255.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHH
Q 009442 26 VIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGI 105 (534)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~ 105 (534)
..+++..+..+++...+.+..|.+.+++ +.+..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 70 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV 70 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 4556667788888899999999999888 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 106 TLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 106 ~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
+.++.+++.++.+++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.++
T Consensus 71 ~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 71 GMSIFMLATLVAVTT------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999998 66999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHH-HHhcccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 186 MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYY-WRMKMPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~-~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
+.+. +..+||+.|++.++..++..+ ..+++||+++. .++++ +
T Consensus 145 ~~l~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~---------- 187 (375)
T 2gfp_A 145 GLLD-----------------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPV--DAPRT--R---------- 187 (375)
T ss_dssp HHSS-----------------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT--TCCCC--C----------
T ss_pred HHHH-----------------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC--Ccccc--c----------
Confidence 9876 345799999987777666554 55567887643 11100 0
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccccccccchhhhHhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHKAPQVNALREVFE 343 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 343 (534)
..++.++.++++ .++...+..+......+....+.|.+.++ .|+++...
T Consensus 188 -------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------- 237 (375)
T 2gfp_A 188 -------------LLTSYKTLFGNS-------GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV---------- 237 (375)
T ss_dssp -------------TTTCSTHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH----------
T ss_pred -------------HHHHHHHHhcCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----------
Confidence 000111222222 12333344444455556666677777665 44443322
Q ss_pred hhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcc
Q 009442 344 TSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFM-MSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNS 422 (534)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (534)
........++.+++.++.+++.||.+++. ..+..+ ...+...+..... ...+.+...... +..+++.....+
T Consensus 238 --g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~l~g~~~~~~~~ 310 (375)
T 2gfp_A 238 --SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF--GVMNVWTLLVPA-ALFFFGAGMLFP 310 (375)
T ss_dssp --HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH--HHHHHHHHHHHH-HHHHHHHHHTSS
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh--ccccHHHHHHHH-HHHHHHHHHhhH
Confidence 22566667788888889999999988732 222222 2222221111110 001222222222 222233333456
Q ss_pred eeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHHHHH
Q 009442 423 TTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLV 477 (534)
Q Consensus 423 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (534)
...++..|.+| +.|+++.|+.+....+|..++|.+.+.+.+ ..++...+.+
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~ 361 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLM 361 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHH
Confidence 77788899998 889999999999999999999999998875 3355555544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=244.79 Aligned_cols=142 Identities=15% Similarity=0.217 Sum_probs=126.7
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhhcc-chhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 67 LPTPINNFVIGVALVGTLTGQLFFGWLGDKL-GRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 67 ~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ .+++.++++|++.|++.+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----HSVQGFYTGLFLIALGSGG 125 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999 999999999999999999999984 0489999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHH
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAA---VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLM 222 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~---~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~ 222 (534)
..+...+++.|++|+++|+++.+. ...+.++|.++++.+++.+. +..+||+.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~~~~f~ 182 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL-----------------------KNFGAAVAFG 182 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH-----------------------HTSCHHHHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccccHHHHHH
Confidence 999999999999999999877666 88899999999999998887 3457999999
Q ss_pred HhhHHHHHHHHHHh
Q 009442 223 LGALPALTTYYWRM 236 (534)
Q Consensus 223 ~~~i~~~~~~~~~~ 236 (534)
+.++..++..+..+
T Consensus 183 ~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 183 IPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 97777666554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=236.04 Aligned_cols=358 Identities=13% Similarity=0.042 Sum_probs=209.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHH---HhccCCCccchH-HHHHHHHHHHHH
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICS---GLSFGSSARSVI-GTLCFFRFWLGF 141 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~s~-~~l~~~r~l~G~ 141 (534)
|++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.... .+++ .. ..++..+++.|+
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP------LLQYNILVGSIVGGI 112 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH------HHHTTCCHHHHGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998888776532211 2221 01 113445666666
Q ss_pred hccccccchhhhhhhcccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHH
Q 009442 142 GIGGDYPLSATIMSEYANK--KTRGAFIAAVFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRI 219 (534)
Q Consensus 142 ~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 219 (534)
+.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+||.
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------------------------~~~~~ 168 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------------------------INNQF 168 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------------------------HCSHH
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------------------------hchhH
Confidence 5555444445555555543 355667777777788999999999988862 35999
Q ss_pred HHHHhhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHH
Q 009442 220 VLMLGALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLI 299 (534)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (534)
.|++.++..++..+..++.+|+|+. ..++++++ +.+++.... ++..+.++++. .+
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~-------~~ 223 (417)
T 2cfq_A 169 VFWLGSGCALILAVLLFFAKTDAPS--SATVANAV-----------GANHSAFSL-----KLALELFRQPK-------LW 223 (417)
T ss_dssp HHTTTTTTTTTHHHHSCSSCCCCSC--SSCSSSSS-----------SSCCCCCCH-----HHHHHHTTCHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHcCccccc--cccccccc-----------ccccccccH-----HHHHHHhcCCc-------hh
Confidence 9998776655554444444433211 00000000 000000000 00011112111 11
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHH
Q 009442 300 GTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVG 379 (534)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~ 379 (534)
...+..+.....++....+.|.++.+. +... + .+.........+..++.+++.++.++++||+|||+.+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-----~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~ 295 (417)
T 2cfq_A 224 FLSLYVIGVSCTYDVFDQQFANFFTSF-FATG--E-----QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLA 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSH--H-----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc--C-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 111111111122222222233333221 1000 0 0001112245566677788899999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHH-HHHHHhhhhHhhhh
Q 009442 380 FFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALS-AAAGKAGAMIGAFV 458 (534)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~~~~~~ 458 (534)
..+.+++.+.+... .+.+.......+ ..+......+..+.+..|.+|++.|+++.++. +....+|++++|.+
T Consensus 296 ~~~~~~~~~~~~~~------~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 296 GTIMSVRIIGSSFA------TSALEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHHTTC------CSHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHh------ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 77776665444331 122222222111 11111112233457889999999999999995 78888999999999
Q ss_pred hhhhcccccccchhHHHHHHHHHHHHHHHHHHh-hccCC
Q 009442 459 VQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL-VTETK 496 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 496 (534)
.|.+.+ ..++...|.+.+++.+++.++.++ .||++
T Consensus 369 ~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 369 AGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTHHH---HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHH---hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 998876 346778888888888888776554 35433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=127.74 Aligned_cols=170 Identities=16% Similarity=0.115 Sum_probs=136.8
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhhh-cccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhcc--chhHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKLLGRL-YYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKL--GRKKVYGI 105 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~--Grr~~~~~ 105 (534)
.+..+........+....|.+.++ + +.+..+.+++.+...++..++.++.|++.||+ |||+.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEVK------------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTBS------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 333444444444555666666554 4 88999999999999999999999999999999 99999888
Q ss_pred HHHHHH-HHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHH-HHHHHHH
Q 009442 106 TLILMV-ICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGV-GIIFAGL 183 (534)
Q Consensus 106 ~~~~~~-i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~i~~~ 183 (534)
+..+.. ++.++..+.++ ++.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++......+ |..+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPA----GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHHHHHHTTSCCT----TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 877766 66666666543 34778888889999998888888889999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHHHHHHhc
Q 009442 184 VSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMK 237 (534)
Q Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 237 (534)
+.+.+. +..||+..|++.++..++..+..++
T Consensus 402 ~~g~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 402 IVGYTV-----------------------DFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHH-----------------------HSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999987 3557999999877777665555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-12 Score=126.38 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHH
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQL 377 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~ 377 (534)
+..+.+.++.............|.+.++.+.+..+.+. ......++..++.++.|+++||+|||+.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~ 95 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHHHH
Confidence 34444555555555566666677777777776655443 677788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhh
Q 009442 378 VGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAF 457 (534)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 457 (534)
.+.++.+++.++...... .++...+.+..+..+.+.....+...+++.|.+|++.|++++++.+....+|..++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887733221 1233333333333444343445667788999999999999999999999999999999
Q ss_pred hhhhhc-ccccc----------------------cchhHHHHHHHHHHHHHHHHHHhh
Q 009442 458 VVQSYT-LDEDS----------------------KKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 458 ~~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+.+.+. +..+. .+|++.|.+.+++.++..++.++.
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 43221 017888877777666665555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-12 Score=122.07 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=117.6
Q ss_pred CchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccc
Q 009442 68 PTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDY 147 (534)
Q Consensus 68 s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 147 (534)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------TSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------CSHHHHHHHTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999998888888877777666 336777888888888877666
Q ss_pred cchhhhhhhccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhH
Q 009442 148 PLSATIMSEYANKKTRGAFIAA-VFAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGAL 226 (534)
Q Consensus 148 ~~~~~~i~e~~~~~~rg~~~~~-~~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i 226 (534)
+....++.|.+|++.|+++.+. ++....+|..++|.+++.+.+ ..+++..|.+.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~-----------------------~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-----------------------SIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH-----------------------HSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH-----------------------hcCcHHHHHHHHH
Confidence 7778899999999999999988 477888999999999998873 3458888888777
Q ss_pred HHHHHHHH-HhcccCCcc
Q 009442 227 PALTTYYW-RMKMPETGR 243 (534)
Q Consensus 227 ~~~~~~~~-~~~~~esp~ 243 (534)
..++..+. ....||.++
T Consensus 388 ~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 388 VALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHhhhcCCCc
Confidence 76665544 334565443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=124.95 Aligned_cols=173 Identities=10% Similarity=0.066 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc------ccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHh-h
Q 009442 298 LIGTMSTWFLLDIAFYSQNLTQKDIFPA------MGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEK-I 370 (534)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~ 370 (534)
.+...+..+.....++....+.+.++.+ .+.+..+.+. ......++..++.++.|+++|| +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~~ 82 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAAS------------IMAIYASMVYLSGTIGGFVADRII 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555556666666666666666554 4554443322 6777888889999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhh--hhhhhhHHHHHH
Q 009442 371 GRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRV--RSTCHALSAAAG 448 (534)
Q Consensus 371 gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~ 448 (534)
|||+++..+.++..++.+++... ++.+...+ ..+..+.+.....+...+++.|.+|++. |+.+.++.+...
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 155 (491)
T 4aps_A 83 GARPAVFWGGVLIMLGHIVLALP------FGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGI 155 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSC------CSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHh------hhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHH
Confidence 99999999999888888777653 12222222 2223333333345667788899999988 778888899999
Q ss_pred HhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 449 KAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 449 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
.+|..++|.+.+.+.+ ..+|+..|.+.++..+++.+..++.
T Consensus 156 ~~g~~~~~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 156 NLGAFIAPLIVGAAQE---AAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876 4589999998887777776665544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-11 Score=118.93 Aligned_cols=180 Identities=18% Similarity=0.130 Sum_probs=119.0
Q ss_pred HHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHH
Q 009442 33 FTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVI 112 (534)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 112 (534)
+........+....+.+.+.. +.+............+...++.++.+++.||+|||+.++.+.....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTL------------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS------------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhc------------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 333333344445556666655 66666777777788888999999999999999999999999888888
Q ss_pred HHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009442 113 CAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192 (534)
Q Consensus 113 ~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~i~~~~~~~l~~~~ 192 (534)
+.+..+.............+...-+..+++.+ ..++...+.+|.+|.+.|+++.++......+|..+++.+...+....
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766544221111112222222233333333 34677889999999999999999999988899888887766554221
Q ss_pred hhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHHH-HHHHhcccCCc
Q 009442 193 LQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTT-YYWRMKMPETG 242 (534)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~~-~~~~~~~~esp 242 (534)
.. ....++...|++.++.+++. ++.++++|||.
T Consensus 434 ~~-----------------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 434 WL-----------------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HH-----------------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 10 01234556777766665554 44556899983
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=122.20 Aligned_cols=171 Identities=13% Similarity=0.011 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 009442 304 TWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMM 383 (534)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~ 383 (534)
..+.............+.+.++.|.++.+.+. ......++..++.++.|+++||+|||+.+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 75 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 33344444444445556666666766554333 677777888899999999999999999999999988
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhc
Q 009442 384 SLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYT 463 (534)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 463 (534)
.++.+..... ++.....+..+..+.+.....+...++..|.+|+++|++++++.+....+|..++|.+.+.+.
T Consensus 76 ~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 76 MLATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888777664 222333333333333333345667788899999999999999999999999999999999888
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 009442 464 LDEDSKKIQHAVLVLAFTNMLGFCCTF-LVTETK 496 (534)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (534)
+ ..+|+..+.+.+++.++..+... ++||++
T Consensus 149 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 149 T---MWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp C---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred H---hccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6 45788888888777776665333 456654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=117.88 Aligned_cols=171 Identities=9% Similarity=-0.001 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccc-ccc------ccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhh-hh
Q 009442 301 TMSTWFLLDIAFYSQNLTQKDIFP-AMG------LVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKI-GR 372 (534)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr 372 (534)
..+..+.....++....+.+.++. +.+ +++.+.+. ......++.+++.+++|+++||+ ||
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~~g~ 84 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRFFGK 84 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555556555555555543 345 55544333 66777788889999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhH---HHHHHH
Q 009442 373 FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHAL---SAAAGK 449 (534)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~ 449 (534)
|+.+..+.++..++.+++.... .+...+.+..+..+++.....+...+++.|.+|++.|+++.+. .+....
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 85 YNTILWLSLIYCVGHAFLAIFE------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTIN 158 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 9999999888888877776642 0223333333344444445567778899999999999876666 888889
Q ss_pred hhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhh
Q 009442 450 AGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492 (534)
Q Consensus 450 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (534)
+|..++|.+.+.+.+ ..+|+..|.+.+++.+++.+..++.
T Consensus 159 ~g~~~g~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 159 FGSFFASLSMPLLLK---NFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHTSTHHHH---TSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876 4488989988888777766655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 534 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-16 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 9e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 79.7 bits (195), Expect = 2e-16
Identities = 55/434 (12%), Positives = 118/434 (27%), Gaps = 51/434 (11%)
Query: 73 NFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTL 132
F + + + G + D+ + LIL + + F A S I +
Sbjct: 62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF--MGFVPWATSSIAVM 119
Query: 133 CFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMILSKIF 192
F G+ G +P M + ++K RG ++ VG L+ ++
Sbjct: 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL----- 174
Query: 193 LQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALTTYYWRMKMPETGRYTAIIEGNA 252
+ + + L AL + P++ I E
Sbjct: 175 -------------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 221
Query: 253 KQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAF 312
+ +E+ + + L I + +
Sbjct: 222 DYPDDYNEK--------------AEQELTAKQIFMQYVLPNKLLWYIAIANVFV------ 261
Query: 313 YSQNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGR 372
G++ +P + F ++ + L +
Sbjct: 262 ---------YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312
Query: 373 FIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELF 432
F + + ++ I ++ + + F +GP + EL
Sbjct: 313 FRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 372
Query: 433 PTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFLV 492
P + T + G G + A + YT+D +V+ ++L +V
Sbjct: 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVV 430
Query: 493 TETKGRSLEEISGE 506
+ R E++ E
Sbjct: 431 MIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 9e-04
Identities = 16/114 (14%), Positives = 29/114 (25%)
Query: 74 FVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLC 133
+ + +L Q FG L DKLG +K + M++ + +
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 134 FFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGIIFAGLVSMI 187
+ G + A + VG + I
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.46 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-38 Score=312.63 Aligned_cols=412 Identities=13% Similarity=0.108 Sum_probs=281.4
Q ss_pred hcccchhHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhh
Q 009442 14 TARTQWYHVTAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWL 93 (534)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l 93 (534)
++..++++|.++..++++++..++++..++.+.|.+.+ + |+|.++.|++.+++.+++.++++++|++
T Consensus 16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~------------g~s~~~~g~~~s~~~~~~~~~~~~~G~l 82 (447)
T d1pw4a_ 16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-Q------------GFSRGDLGFALSGISIAYGFSKFIMGSV 82 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-S------------TTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------------CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999998999999999999999999998764 4 8999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhccccchhhhHHHHHHHH
Q 009442 94 GDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 173 (534)
Q Consensus 94 ~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 173 (534)
+||+|||+++.++.++.+++.+++++++... ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 160 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 160 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhhccccchhh--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999998864211 35789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHhhHHHHH-HHHHHhcccCCccchhhhcCCh
Q 009442 174 QGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLGALPALT-TYYWRMKMPETGRYTAIIEGNA 252 (534)
Q Consensus 174 ~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~~i~~~~-~~~~~~~~~esp~~~~~~~~~~ 252 (534)
..+|..+++.+++.+.... .+||+.|++.++..++ .++..++.+|+|+.. .....
T Consensus 161 ~~~g~~i~~~~~~~~~~~~----------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 216 (447)
T d1pw4a_ 161 HNVGGGIPPLLFLLGMAWF----------------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPPI 216 (447)
T ss_dssp HHHHHTSHHHHHHHHHHHT----------------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCSC
T ss_pred cchhhhhhhhhhhhHhhhh----------------------hcccccchhhhhhHHHHHHHHHHhcccchhhc--ccchh
Confidence 9999999999988776432 3599999887666555 455555677776542 11111
Q ss_pred HHHHHHHHhhhccccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccc-cccccc
Q 009442 253 KQAASDMGRVLDIEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPA-MGLVHK 331 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 331 (534)
++..++. .++.++ +..++...++...+...+ .+.++......++.....+....+.+.++.+ .+++..
T Consensus 217 ~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (447)
T d1pw4a_ 217 EEYKNDY--------PDDYNE-KAEQELTAKQIFMQYVLP--NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285 (447)
T ss_dssp TTTCCC----------------------CCTHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred hhhhhhc--------ccchhh-ccccccchhhHHHHHHHc--CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccc
Confidence 1100000 000000 000000111111111111 1223444444445555555666666666654 334333
Q ss_pred ccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 009442 332 APQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGL 411 (534)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (534)
.. ........++.+++.++++++.||++|++..........+.......... .. ..+.....+..+
T Consensus 286 ~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 286 KS------------SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-NP-AGNPTVDMICMI 351 (447)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-CC-TTCHHHHHHHHH
T ss_pred hh------------hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh-cc-cccHHHHHHHHH
Confidence 22 22667777888999999999999998765444333333332222222211 11 122223333333
Q ss_pred HHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhh-hhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 009442 412 TFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAG-AMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTF 490 (534)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (534)
..++...+..+....+..|.+|++.|+++.|+.+..++++ .+++|.+.+.+.+ ..|+...+.+.+++.+++.++.+
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHH
Confidence 3333333445566778899999999999999999988874 5678899998887 45788888888887777777666
Q ss_pred hh
Q 009442 491 LV 492 (534)
Q Consensus 491 ~~ 492 (534)
++
T Consensus 429 ~~ 430 (447)
T d1pw4a_ 429 VV 430 (447)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8.6e-28 Score=233.70 Aligned_cols=390 Identities=13% Similarity=0.021 Sum_probs=239.8
Q ss_pred HHHHHHhhhhHHHHHHHHhh-hhhhcccCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHH
Q 009442 29 GMGFFTDAYDLFCISTVSKL-LGRLYYYDPANPKHNPGKLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITL 107 (534)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~ 107 (534)
.+..+...+......+.+|. +.+++ |+|.++.|++.+++.++..++++++|+++||+|||++++++.
T Consensus 13 ~~~~f~~~~~~~~~~~~l~~~l~~~~------------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 13 GLFFFFYFFIMGAYFPFFPIWLHDIN------------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 33344455555666777776 55667 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccccccchhhhhhhcccc--chhhhHHHHHHHHHHHHHHHHHHHH
Q 009442 108 ILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANK--KTRGAFIAAVFAMQGVGIIFAGLVS 185 (534)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~i~~~~~ 185 (534)
.+..++.++..+..+.. ......++.+.+.+.+.+...........+..++ +++.+..+........|..+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGP--LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV 158 (417)
T ss_dssp HHHHHTHHHHHHHTHHH--HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccc
Confidence 99999888888763300 1122234555555555555555544444444443 2445567777788889999999999
Q ss_pred HHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHH-hhHHHHHHHHHHhcccCCccchhhhcCChHHHHHHHHhhhc
Q 009442 186 MILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLML-GALPALTTYYWRMKMPETGRYTAIIEGNAKQAASDMGRVLD 264 (534)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~-~~i~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~ 264 (534)
+.+.. .+|+..+.. .....+...+..+..+|+|+. .++++++...
T Consensus 159 ~~l~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------- 204 (417)
T d1pv7a_ 159 GIMFT------------------------INNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANAVGAN------- 204 (417)
T ss_dssp HHHHH------------------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSS---SCSSHHHHSC-------
T ss_pred ccccc------------------------ccccccccchhhHHHHHHHHHHHHhcccccc---hhhhhhhhhh-------
Confidence 88863 235555555 444455556666677777653 1111111100
Q ss_pred cccchhhhhhhhhcccCcccchhHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchhhhHhhh
Q 009442 265 IEIDEEHDKLSQFKEVNKYPLLSREFFQRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMGLVHKAPQVNALREVFET 344 (534)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (534)
+....... .....+.+..+. .....................+......+.+. +...
T Consensus 205 -~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 260 (417)
T d1pv7a_ 205 -HSAFSLKL--------ALELFRQPKLWF---LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ------------GTRV 260 (417)
T ss_dssp -CCCCCHHH--------HHHHTTSSHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHH------------HHHH
T ss_pred -cccccccc--------cccccccccccc---hhhhhHHHHHHHHhhhcccccccccccccccc------------chhh
Confidence 00000000 000000000000 11111111111111122122222222222111 1122
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHhhcCCccee
Q 009442 345 SRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKYDYLKNDNKWLFATLYGLTFFFANFGPNSTT 424 (534)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (534)
.........++..++..+.+++.||.++|+.+..+..+..++.+.+... ++.+...... +..+++.....+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------TSALEVVILK-TLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------CCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------cccchhhHHH-HHHHHHHHHHHHHH
Confidence 2335666677888889999999999999999999988888877776653 2333333332 33333333345667
Q ss_pred eecccccCChhhhhhhhhHHH-HHHHhhhhHhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHh-hccCCCCCc
Q 009442 425 FVLPAELFPTRVRSTCHALSA-AAGKAGAMIGAFVVQSYTLDEDSKKIQHAVLVLAFTNMLGFCCTFL-VTETKGRSL 500 (534)
Q Consensus 425 ~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 500 (534)
.++..|.+|++.|+++.|+.. ....+|..++|.+.|.+.+ ..|++.++++.+++.++..++..+ +++++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 788899999999999999864 5567899999999999987 558888998888888877776664 455444443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.2e-13 Score=132.50 Aligned_cols=163 Identities=10% Similarity=-0.016 Sum_probs=116.6
Q ss_pred hhhhhhcccccccccccccccchhhhHhhhhHHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009442 315 QNLTQKDIFPAMGLVHKAPQVNALREVFETSRAMFVVALLGTFPGYWFTVFLIEKIGRFIIQLVGFFMMSLFMLIIGIKY 394 (534)
Q Consensus 315 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~ 394 (534)
.....| ++.+.|++..+.+. ......++..++.++.|+++||+|||+.+..+.++..++.++.+...
T Consensus 44 ~~~~~p-~~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 110 (447)
T d1pw4a_ 44 FALAMP-YLVEQGFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 110 (447)
T ss_dssp HHHHHH-HTTSSTTCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHH-HHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccc
Confidence 333444 34566777776555 67778888899999999999999999999999999888888776643
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCCcceeeecccccCChhhhhhhhhHHHHHHHhhhhHhhhhhhhhcccccccchhHH
Q 009442 395 DYLKNDNKWLFATLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMIGAFVVQSYTLDEDSKKIQHA 474 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 474 (534)
... +......+..+..+++.....+....++.|.+|+++|++++++.+....+|..+++.+.+....... +|+..
T Consensus 111 ~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~ 185 (447)
T d1pw4a_ 111 WAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN--DWHAA 185 (447)
T ss_dssp HHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC--CSTTC
T ss_pred hhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh--ccccc
Confidence 211 1222223333333333333456667788999999999999999999999999999988877665332 77888
Q ss_pred HHHHHHHHHHHHHHHHh-hccC
Q 009442 475 VLVLAFTNMLGFCCTFL-VTET 495 (534)
Q Consensus 475 ~~~~~~~~~~~~~~~~~-~~~~ 495 (534)
+.+.+++.++..++.++ ++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 186 LYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp THHHHHHHHHHHHHHHHHCCCS
T ss_pred chhhhhhHHHHHHHHHHhcccc
Confidence 88877777766666554 4443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.3e-13 Score=130.46 Aligned_cols=146 Identities=10% Similarity=0.062 Sum_probs=124.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHhHhhhhhccchhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHhccc
Q 009442 66 KLPTPINNFVIGVALVGTLTGQLFFGWLGDKLGRKKVYGITLILMVICAICSGLSFGSSARSVIGTLCFFRFWLGFGIGG 145 (534)
Q Consensus 66 ~~s~~~~g~~~s~~~lg~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~ 145 (534)
+.+....+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+. ++.+.+++.-++.|++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------TSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc------cccchhhHHHHHHHHHHHH
Confidence 4566778888889999999999999999999999999999999999999999988 4488999999999999999
Q ss_pred cccchhhhhhhccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCcchHHHHHHh
Q 009442 146 DYPLSATIMSEYANKKTRGAFIAAV-FAMQGVGIIFAGLVSMILSKIFLQLFPAPAFEDDEIFSTQPEGDYLWRIVLMLG 224 (534)
Q Consensus 146 ~~~~~~~~i~e~~~~~~rg~~~~~~-~~~~~lG~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~~~~~ 224 (534)
..+...+++.|.+|+++|+++.++. .....+|..+++.+++++.+ ..||+..|++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-----------------------~~g~~~~~~~~ 385 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-----------------------SIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-----------------------HHCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHCHHHHHHHH
Confidence 9999999999999999999999975 45678999999999999884 45699999887
Q ss_pred hHHHHHHHHH-HhcccC
Q 009442 225 ALPALTTYYW-RMKMPE 240 (534)
Q Consensus 225 ~i~~~~~~~~-~~~~~e 240 (534)
++..++..++ .+.+++
T Consensus 386 ~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 386 GLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 7666654444 344443
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